Citrus Sinensis ID: 030233

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHccccEEEcccccccEEcEEEEccEEEEEEEcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccEEEEEEEcccccHHHHHHHHccccEEEEEEEccEEEEEEEEccEEEEEEEccccccccHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHcccccccccEEEEEcEccccEcHHHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLgeivtttptigFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTlgltfvvdssdrERISEARNELHQILSDNELSNAALLVFankqdlpnvmptaevadklelyslgqrrwsiqscsaisgqglYEGLDWlsnnisvkn
Flexible Loop (DISEMBL)
MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQglyegldwlsnnisvkn
Low Complexity Region (SEG)
MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN
Disordered region (IsUnstruct)
****ISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD***************QILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN******
Disordered Region (DISOPRED)
MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS***
Disordered Region (DISEMBL)
MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN
Disordered Region (DISPRO)
*GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q06396	181	ADP-ribosylation factor 1	yes	no	0.994	0.994	0.694	1e-70
P51823	181	ADP-ribosylation factor 2	yes	no	0.994	0.994	0.694	2e-70
O48649	181	ADP-ribosylation factor 1	N/A	no	0.994	0.994	0.694	2e-70
Q9SHU5	205	Probable ADP-ribosylation	no	no	0.994	0.878	0.688	5e-70
P51822	181	ADP-ribosylation factor 1	N/A	no	1.0	1.0	0.685	6e-70
P0DH91	181	ADP-ribosylation factor 2	yes	no	0.994	0.994	0.688	7e-70
Q9LQC8	181	ADP-ribosylation factor 2	yes	no	0.994	0.994	0.688	7e-70
P36397	181	ADP-ribosylation factor 1	yes	no	0.994	0.994	0.688	8e-70
O48920	181	ADP-ribosylation factor O	N/A	no	0.994	0.994	0.683	1e-69
P51821	181	ADP-ribosylation factor 1	N/A	no	0.994	0.994	0.683	2e-69

>sp|Q06396|ARF1_ORYSJ ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3

 Score =  265 bits (678), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/180 (69%), Positives = 149/180 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2

 Score =  265 bits (676), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/180 (69%), Positives = 149/180 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O48649|ARF1_SALBA ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3

 Score =  265 bits (676), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/180 (69%), Positives = 149/180 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNIS K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Salix bakko (taxid: 72444)

>sp|Q9SHU5|ARF4_ARATH Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3

 Score =  263 bits (672), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 146/180 (81%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   SR+AKRF P+ ++++LMVGLD SGKTTILYK+KLGE+VTT PTIGFN+E VEYK 
Sbjct: 1   MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKG 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            +F VWD+GGQ KIR LWRHYF++  GL FVVDSSD ER+SEARNELH+IL+DNEL  A 
Sbjct: 61  INFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGAC 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           +LVFANKQD  N +P AEVA+KL L+SL +R W IQ  SAISGQGLYEGL+WLS  I  K
Sbjct: 121 VLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|P51822|ARF1_DAUCA ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2

 Score =  263 bits (671), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 124/181 (68%), Positives = 150/181 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct: 121 LLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

Query: 181 N 181
           +
Sbjct: 181 S 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Daucus carota (taxid: 4039)

>sp|P0DH91|ARF2B_ARATH ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1

 Score =  263 bits (671), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 149/180 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQC8|ARF2A_ARATH ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2

 Score =  263 bits (671), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 149/180 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|P36397|ARF1_ARATH ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2

 Score =  262 bits (670), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 148/180 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG    +L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; required for the sequence-specific vacuolar sorting route to the lytic vacuole, for the ER-to-Golgi transport and for the Golgi-derived transport to the plasma membrane. Involved in the recruitment of COPI and GDAP1 to membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|O48920|ARF_VIGUN ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3

 Score =  261 bits (668), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/180 (68%), Positives = 149/180 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGL+WLSNNI+ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Vigna unguiculata (taxid: 3917)

>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2

 Score =  261 bits (666), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/180 (68%), Positives = 148/180 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   ++   R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNN++ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
224084398	181	predicted protein [Populus trichocarpa]	0.994	0.994	0.711	2e-71
255567885	182	ADP-ribosylation factor, arf, putative [	0.994	0.989	0.727	4e-71
296087398	211	unnamed protein product [Vitis vinifera]	0.994	0.853	0.716	5e-71
225438827	182	PREDICTED: ADP-ribosylation factor 1 [Vi	0.994	0.989	0.716	6e-71
147810961	182	hypothetical protein VITISV_038875 [Viti	0.994	0.989	0.716	7e-71
449448292	181	PREDICTED: ADP-ribosylation factor 1-lik	0.994	0.994	0.711	7e-71
224105601	181	predicted protein [Populus trichocarpa]	0.994	0.994	0.727	3e-70
449485432	181	PREDICTED: ADP-ribosylation factor 1-lik	0.994	0.994	0.705	3e-70
357482765	182	ADP-ribosylation factor [Medicago trunca	0.994	0.989	0.705	4e-70
449495739	342	PREDICTED: ADP-ribosylation factor 1-lik	0.994	0.526	0.711	1e-69

>gi|224084398|ref|XP_002307284.1| predicted protein [Populus trichocarpa] gi|222856733|gb|EEE94280.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/180 (71%), Positives = 152/180 (84%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  ISRL K  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGMAISRLVKLLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER++EAR+ELH++LS++EL +A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVTEARDELHRMLSEDELRDAT 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LL+FANKQDLPN M  +E+ DKL L+SL QRRW IQ+  A SGQGLYEGLDWLS+NIS K
Sbjct: 121 LLIFANKQDLPNAMSVSEITDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNISSK 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567885|ref|XP_002524920.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|223535755|gb|EEF37417.1| ADP-ribosylation factor, arf, putative [Ricinus communis]

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 151/180 (83%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  ISRL K  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGMAISRLIKLLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRERISEAR+EL ++LS++EL +A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERISEARDELQRMLSEDELRDAT 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  +EV DKL L+SL QRRW IQ+  A SGQGLYEGLDWLS+NIS K
Sbjct: 121 LLVFANKQDLPNAMTVSEVTDKLGLHSLRQRRWYIQATCATSGQGLYEGLDWLSSNISSK 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087398|emb|CBI33772.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (695), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 152/180 (84%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG +ISRL K  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 30  MGLVISRLLKMLFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 89

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRERI EA++ELH++LS++EL +A 
Sbjct: 90  VSFTVWDVGGQHKIRPLWRHYFQNTQGLIFVVDSNDRERILEAKDELHRMLSEDELRDAT 149

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  +E+ DK+ L+SL QRRW IQS  A SGQGLYEGLDWLS+NIS K
Sbjct: 150 LLVFANKQDLPNAMSVSEITDKMGLHSLRQRRWYIQSTCATSGQGLYEGLDWLSSNISSK 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438827|ref|XP_002278476.1| PREDICTED: ADP-ribosylation factor 1 [Vitis vinifera]

 Score =  271 bits (694), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 152/180 (84%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG +ISRL K  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLVISRLLKMLFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRERI EA++ELH++LS++EL +A 
Sbjct: 61  VSFTVWDVGGQHKIRPLWRHYFQNTQGLIFVVDSNDRERILEAKDELHRMLSEDELRDAT 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  +E+ DK+ L+SL QRRW IQS  A SGQGLYEGLDWLS+NIS K
Sbjct: 121 LLVFANKQDLPNAMSVSEITDKMGLHSLRQRRWYIQSTCATSGQGLYEGLDWLSSNISSK 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810961|emb|CAN59803.1| hypothetical protein VITISV_038875 [Vitis vinifera]

 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 129/180 (71%), Positives = 152/180 (84%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG +ISRL K  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLVISRLLKMLFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRERI EA++ELH++LS++EL +A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERILEAKDELHRMLSEDELRDAT 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  +E+ DK+ L+SL QRRW IQS  A SGQGLYEGLDWLS+NIS K
Sbjct: 121 LLVFANKQDLPNAMSVSEITDKMGLHSLRQRRWYIQSTCATSGQGLYEGLDWLSSNISSK 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448292|ref|XP_004141900.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus]

 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 128/180 (71%), Positives = 151/180 (83%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  ISRL +  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+D+ERISEAR+ELH++LS++EL +A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           +LVFANKQDLPN M  AE+ DKL L+SL  RRW IQ+  A SGQGLYEGLDWLS+NIS K
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISTK 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105601|ref|XP_002313868.1| predicted protein [Populus trichocarpa] gi|222850276|gb|EEE87823.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 148/180 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  ISRLA+RF P+  I++LMVGLDASGKTTILYK+KLGEIV T PTIGFNVE V YKN
Sbjct: 1   MGATISRLARRFLPKTEIRILMVGLDASGKTTILYKLKLGEIVLTVPTIGFNVETVVYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ KIR LWR+YF+++ GL FVVDS+DR RISEARNELH+ILSD EL +A 
Sbjct: 61  ISFTVWDVGGQQKIRPLWRYYFQNSHGLIFVVDSNDRGRISEARNELHRILSDIELKDAI 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQD+PN M  +EVADKL L +L QRRW +   SA SG+GLYEGLDWLSN IS K
Sbjct: 121 LLVFANKQDVPNAMSVSEVADKLGLPTLKQRRWQVNVSSATSGRGLYEGLDWLSNYISNK 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485432|ref|XP_004157166.1| PREDICTED: ADP-ribosylation factor 1-like [Cucumis sativus]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 127/180 (70%), Positives = 150/180 (83%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  ISRL +  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PT GFNVE VEYKN
Sbjct: 1   MGVAISRLVRMLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTTGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+D+ERISEAR+ELH++LS++EL +A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERISEARDELHRMLSEHELVDAT 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           +LVFANKQDLPN M  AE+ DKL L+SL  RRW IQ+  A SGQGLYEGLDWLS+NIS K
Sbjct: 121 VLVFANKQDLPNAMTVAEITDKLGLHSLRNRRWYIQATCATSGQGLYEGLDWLSSNISTK 180

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482765|ref|XP_003611669.1| ADP-ribosylation factor [Medicago truncatula] gi|355513004|gb|AES94627.1| ADP-ribosylation factor [Medicago truncatula] gi|388506068|gb|AFK41100.1| unknown [Medicago truncatula]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/180 (70%), Positives = 152/180 (84%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  +SR+ + F+ +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLTVSRIMRLFYAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRERI EAR+ELH++LS++EL +A 
Sbjct: 61  VSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERILEARDELHRMLSEDELRDAT 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN +  +E+ DKL L+SL QRRW IQS  A SGQGLYEGLDWLS+NIS K
Sbjct: 121 LLVFANKQDLPNALSVSEITDKLGLHSLRQRRWYIQSTCATSGQGLYEGLDWLSSNISNK 180

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495739|ref|XP_004159930.1| PREDICTED: ADP-ribosylation factor 1-like, partial [Cucumis sativus]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/180 (71%), Positives = 145/180 (80%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG +ISRL KR F    +++LM+GLDASGKTTILYK+KLGEIV T PTIGFNVE VEYKN
Sbjct: 159 MGAVISRLRKRLFQNREVRILMLGLDASGKTTILYKLKLGEIVMTVPTIGFNVETVEYKN 218

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            S  VWDVGGQ+KIR LWRHYF++T GL FVVDS DR RI EARNELH+ILS+ EL NAA
Sbjct: 219 MSCSVWDVGGQDKIRPLWRHYFQNTQGLVFVVDSVDRGRICEARNELHRILSEAELRNAA 278

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           +LVFANKQDLP+ M  +E+  KL L++L QRRW IQ  SA SGQGLYEG DWL NNIS K
Sbjct: 279 VLVFANKQDLPHSMTVSEITTKLGLHTLSQRRWYIQGTSATSGQGLYEGFDWLCNNISTK 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
TAIR|locus:2049103	205	ARFB1A "ADP-ribosylation facto	0.994	0.878	0.688	4.7e-64
UNIPROTKB|P51823	181	ARF "ADP-ribosylation factor 2	0.994	0.994	0.694	7.6e-64
TAIR|locus:2222677	188	ARFA1B "ADP-ribosylation facto	0.994	0.957	0.688	1.2e-63
TAIR|locus:2019948	181	ARFA1F "ADP-ribosylation facto	0.994	0.994	0.688	1.6e-63
TAIR|locus:2028926	181	ARF1 "ADP-ribosylation factor	0.994	0.994	0.688	2e-63
TAIR|locus:2026780	181	ARFA1D [Arabidopsis thaliana (	0.994	0.994	0.688	2e-63
TAIR|locus:2065114	181	ARF1A1C [Arabidopsis thaliana	0.994	0.994	0.688	2e-63
TAIR|locus:2098063	181	ARFA1E "ADP-ribosylation facto	0.994	0.994	0.683	5.4e-63
WB|WBGene00000183	180	arf-3 [Caenorhabditis elegans	0.983	0.988	0.674	1.6e-61
UNIPROTKB|J9NWP6	181	LOC480487 "Uncharacterized pro	0.994	0.994	0.661	4.3e-61

TAIR|locus:2049103 ARFB1A "ADP-ribosylation factor B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 124/180 (68%), Positives = 146/180 (81%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG   SR+AKRF P+ ++++LMVGLD SGKTTILYK+KLGE+VTT PTIGFN+E VEYK 
Sbjct:     1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKG 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              +F VWD+GGQ KIR LWRHYF++  GL FVVDSSD ER+SEARNELH+IL+DNEL  A 
Sbjct:    61 INFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGAC 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
             +LVFANKQD  N +P AEVA+KL L+SL +R W IQ  SAISGQGLYEGL+WLS  I  K
Sbjct:   121 VLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P51823 ARF "ADP-ribosylation factor 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 125/180 (69%), Positives = 149/180 (82%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct:     1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER+ EAR+ELH++L+++EL +A 
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
             LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

GO:0006471 "protein ADP-ribosylation" evidence=IEP;ISS

GO:0006886 "intracellular protein transport" evidence=IEP;ISS

GO:0016192 "vesicle-mediated transport" evidence=IEP;ISS

TAIR|locus:2222677 ARFA1B "ADP-ribosylation factor A1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 124/180 (68%), Positives = 149/180 (82%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct:     1 MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
             LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIATK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2019948 ARFA1F "ADP-ribosylation factor A1F" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 124/180 (68%), Positives = 149/180 (82%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct:     1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
             LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005507 "copper ion binding" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2028926 ARF1 "ADP-ribosylation factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 124/180 (68%), Positives = 149/180 (82%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct:     1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
             LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2026780 ARFA1D [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 124/180 (68%), Positives = 149/180 (82%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct:     1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
             LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2065114 ARF1A1C [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 124/180 (68%), Positives = 148/180 (82%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG    +L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct:     1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
             LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0005798 "Golgi-associated vesicle" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2098063 ARFA1E "ADP-ribosylation factor A1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 123/180 (68%), Positives = 148/180 (82%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG    +L  + F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct:     1 MGLSFGKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
             LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct:   121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

GO:0005525 "GTP binding" evidence=IEA;ISS;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0016004 "phospholipase activator activity" evidence=TAS

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

WB|WBGene00000183 arf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 120/178 (67%), Positives = 145/178 (81%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG  IS L  R F + ++++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct:     1 MGLTISSLFNRLFGKRQVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+D+ERI E+R ELH++L+++EL +A 
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERIEESREELHKMLNEDELRDAT 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
             LLVFANKQDLPN M  AE+ DKL L++L  R+W IQ+  A  G GLYEGLDWLSN +S
Sbjct:   121 LLVFANKQDLPNAMTAAELTDKLGLHNLRSRQWYIQATCATQGHGLYEGLDWLSNQLS 178

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

UNIPROTKB|J9NWP6 LOC480487 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 119/180 (66%), Positives = 144/180 (80%)

Query:     1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
             MG +  +L K  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct:     1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query:    61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
              SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A 
Sbjct:    61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120

Query:   121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
             LLVF NKQDLPN M  AE+ DKL L+SL QR W IQ+  A SG GLYEGLDWLSN +  +
Sbjct:   121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKTQ 180

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48920	ARF_VIGUN	No assigned EC number	0.6833	0.9944	0.9944	N/A	no
P51644	ARF4_XENLA	No assigned EC number	0.6573	0.9834	0.9888	N/A	no
O00909	ARF1_DICDI	No assigned EC number	0.6685	0.9834	0.9780	yes	no
P51643	ARF1_XENLA	No assigned EC number	0.6723	0.9779	0.9779	N/A	no
P91924	ARF_DUGJA	No assigned EC number	0.6723	0.9779	0.9672	N/A	no
P36397	ARF1_ARATH	No assigned EC number	0.6888	0.9944	0.9944	yes	no
Q61LA8	ARF12_CAEBR	No assigned EC number	0.6723	0.9779	0.9779	N/A	no
Q7RVM2	ARF_NEUCR	No assigned EC number	0.625	1.0	0.9783	N/A	no
P61210	ARF1_LOCMI	No assigned EC number	0.6629	1.0	0.9945	N/A	no
P84082	ARF2_RAT	No assigned EC number	0.6723	0.9779	0.9779	yes	no
P84080	ARF1_BOVIN	No assigned EC number	0.6723	0.9779	0.9779	yes	no
P84081	ARF2_BOVIN	No assigned EC number	0.6723	0.9779	0.9779	yes	no
Q5R5P7	ARF3_PONAB	No assigned EC number	0.6555	0.9944	0.9944	yes	no
P51822	ARF1_DAUCA	No assigned EC number	0.6850	1.0	1.0	N/A	no
P51823	ARF2_ORYSJ	No assigned EC number	0.6944	0.9944	0.9944	yes	no
P51821	ARF1_CHLRE	No assigned EC number	0.6833	0.9944	0.9944	N/A	no
P51824	ARF1_SOLTU	No assigned EC number	0.6949	0.9779	0.8984	N/A	no
P84077	ARF1_HUMAN	No assigned EC number	0.6723	0.9779	0.9779	yes	no
Q94650	ARF1_PLAFA	No assigned EC number	0.6235	0.9834	0.9834	yes	no
P36579	ARF1_SCHPO	No assigned EC number	0.6666	0.9779	0.9833	yes	no
Q7KQL3	ARF1_PLAF7	No assigned EC number	0.6235	0.9834	0.9834	yes	no
P61209	ARF1_DROME	No assigned EC number	0.6629	1.0	0.9945	yes	no
P84079	ARF1_RAT	No assigned EC number	0.6723	0.9779	0.9779	yes	no
P84078	ARF1_MOUSE	No assigned EC number	0.6723	0.9779	0.9779	yes	no
P0CM17	ARF_CRYNB	No assigned EC number	0.6685	1.0	0.9945	N/A	no
P0CM16	ARF_CRYNJ	No assigned EC number	0.6685	1.0	0.9945	yes	no
Q06396	ARF1_ORYSJ	No assigned EC number	0.6944	0.9944	0.9944	yes	no
P61204	ARF3_HUMAN	No assigned EC number	0.6555	0.9944	0.9944	yes	no
P61207	ARF3_TAKRU	No assigned EC number	0.6555	0.9944	0.9944	N/A	no
O48649	ARF1_SALBA	No assigned EC number	0.6944	0.9944	0.9944	N/A	no
Q8BSL7	ARF2_MOUSE	No assigned EC number	0.6723	0.9779	0.9779	yes	no
Q9LQC8	ARF2A_ARATH	No assigned EC number	0.6888	0.9944	0.9944	yes	no
P49076	ARF_MAIZE	No assigned EC number	0.6740	1.0	1.0	N/A	no
Q4R5P2	ARF1_MACFA	No assigned EC number	0.6723	0.9779	0.9779	N/A	no
Q75A26	ARF_ASHGO	No assigned EC number	0.6327	0.9779	0.9779	yes	no
Q25761	ARF1_PLAFO	No assigned EC number	0.6179	0.9834	0.9834	N/A	no
P0DH91	ARF2B_ARATH	No assigned EC number	0.6888	0.9944	0.9944	yes	no
O23778	ARF1_CATRO	No assigned EC number	0.6666	0.9944	0.9944	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_V4094 ARF family protein (182 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	181
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	1e-100
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	4e-99
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	8e-99
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-93
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	4e-92
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-88
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-87
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-77
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	8e-77
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	2e-64
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-61
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-59
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	2e-59
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-55
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	1e-48
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-46
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	8e-40
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	6e-39
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	1e-36
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	3e-33
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	3e-32
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-23
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-17
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	8e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-15
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	2e-10
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-10
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-10
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-10
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	7e-10
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	6e-09
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-07
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	2e-07
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-07
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-07
pfam00071	162	pfam00071, Ras, Ras family	5e-07
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	6e-07
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	8e-07
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-06
pfam08477	116	pfam08477, Miro, Miro-like protein	5e-06
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-06
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-05
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-05
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-05
cd01898	170	cd01898, Obg, Obg GTPase	3e-05
smart00275	342	smart00275, G_alpha, G protein alpha subunit	4e-05
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	5e-05
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	8e-05
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-04
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	1e-04
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-04
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-04
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	3e-04
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-04
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	6e-04
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	9e-04
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	0.001
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	0.001
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	0.002
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	0.002
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	0.003
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	0.003
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	0.004
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	0.004

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  287 bits (735), Expect = e-100
 Identities = 124/181 (68%), Positives = 149/181 (82%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   ++L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180

Query: 181 N 181
            
Sbjct: 181 A 181

Length = 181

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  282 bits (724), Expect = 4e-99
 Identities = 117/159 (73%), Positives = 134/159 (84%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGGQ+KIR L
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHYF++T GL FVVDS+DRERI EAR EL ++L+++EL +A LLVFANKQDLPN M  A
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAA 120

Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           EV DKL L+SL  R W IQ+  A SG GLYEGLDWLSNN
Sbjct: 121 EVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNN 159

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  282 bits (724), Expect = 8e-99
 Identities = 116/181 (64%), Positives = 141/181 (77%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  +S   K  F +  +++LMVGLDA+GKTTILYK+KLGE+VTT PTIGFNVE VEYKN
Sbjct: 1   MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F +WDVGGQ+K+R LWRHY+++T GL FVVDS+DRERI +AR EL ++LS++EL +A 
Sbjct: 61  LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M T EV +KL L+S+ QR W IQ C A + QGLYEGLDWLS NI   
Sbjct: 121 LLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180

Query: 181 N 181
            
Sbjct: 181 M 181

Length = 182

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  268 bits (688), Expect = 1e-93
 Identities = 102/158 (64%), Positives = 125/158 (79%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           ++LM+GLD +GKTTILYK+KLGE+VTT PTIGFNVE VEYKN  F VWDVGGQ+KIR LW
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60

Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           +HY+ +T GL FVVDSSDRERI EA+NELH++L++ EL  A LL+ ANKQDLP  +  +E
Sbjct: 61  KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120

Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           + + L L S+  RRW IQ CSA++G GL EGLDWL   
Sbjct: 121 LIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  265 bits (680), Expect = 4e-92
 Identities = 103/170 (60%), Positives = 129/170 (75%)

Query: 8   LAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWD 67
           LAK F     +++L++GLD +GKTTILYK+KLGEIVTT PTIGFNVE V YKN  F VWD
Sbjct: 5   LAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWD 64

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
           VGGQ  +R LWR+YF +T  + FVVDS+DR+RI EA+ ELH +L++ EL++A LL+ ANK
Sbjct: 65  VGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANK 124

Query: 128 QDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           QDLP  M  AE+ + L L+ L  R W IQ CSA++G+GL EGLDWLSN I
Sbjct: 125 QDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGLDWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  257 bits (657), Expect = 1e-88
 Identities = 115/177 (64%), Positives = 139/177 (78%), Gaps = 4/177 (2%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MGKL S+L    F    +++LMVGLDA+GKTTILYK+KLGE VTT PTIGFNVE V YKN
Sbjct: 1   MGKLFSKL----FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKN 56

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHY+ +T GL FVVDS+DR+RI EAR ELH++L+++EL +A 
Sbjct: 57  ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV 116

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           +LVFANKQDLP+ M  AE+ +KL L+S+  R W IQ   A SG GLYEGL WLSNN+
Sbjct: 117 ILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  252 bits (646), Expect = 3e-87
 Identities = 102/166 (61%), Positives = 126/166 (75%)

Query: 11  RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGG 70
           + F    +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN  F VWDVGG
Sbjct: 3   KLFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGG 62

Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q+KIR LWRHY+  T GL FVVDS+DR+RI EAR ELH+I++D E+ +A LLVFANKQDL
Sbjct: 63  QDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDL 122

Query: 131 PNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           P+ M   E+ +KL L  +  R W +Q   A SG GLYEGL WLS+N
Sbjct: 123 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSSN 168

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  228 bits (582), Expect = 1e-77
 Identities = 87/157 (55%), Positives = 116/157 (73%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           ++L++GLD +GKTTILY++++GE+VTT PTIGFNVE V YKN  F VWD+GGQ  IR  W
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60

Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           R Y+ +T  + +VVDS+DR+R+  +++ELH +L + EL +A LLVFANKQD+P  +  AE
Sbjct: 61  RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120

Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175
           VA+KL L  L  R W I   SA  G+GL EG+DWL N
Sbjct: 121 VAEKLGLSELKDRTWQIFKTSATKGEGLDEGMDWLVN 157

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  226 bits (579), Expect = 8e-77
 Identities = 83/173 (47%), Positives = 118/173 (68%)

Query: 4   LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSF 63
           L S L   FFP+   K+++VGLD +GKTTILY+  LGE+V T+PTIG NVE + YKN  F
Sbjct: 2   LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRF 61

Query: 64  CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV 123
            +WD+GGQ  +R+ W  Y+ +T  +  V+DS+DRER+   + EL+++L+  +L  A LLV
Sbjct: 62  LMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLV 121

Query: 124 FANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
            ANKQDL   M  AE+++ L L S+    W IQ C A++G+GL EGLDW+++ 
Sbjct: 122 LANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIASR 174

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  195 bits (497), Expect = 2e-64
 Identities = 78/174 (44%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 4   LISRLAK-RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKS 62
           L+S L K +   +  +++L++GLD +GKTTIL ++   +I   TPT GFN++ V+     
Sbjct: 1   LLSILRKLKPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFK 60

Query: 63  FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
             VWD+GGQ KIR  WR+YF +T  L +V+DS+DR+R  EA  EL ++L + +L+   +L
Sbjct: 61  LNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVL 120

Query: 123 VFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           VFANKQDL    P  EVA+ L L+ +  R W IQ+CSA +G+GL EG++W+  N
Sbjct: 121 VFANKQDLLTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGMNWVCKN 174

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score =  186 bits (474), Expect = 5e-61
 Identities = 84/160 (52%), Positives = 116/160 (72%), Gaps = 1/160 (0%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           +++ +GLD +GKTTIL+K+K  E +   PTIGFNVE VEYKN  F +WDVGG++K+R LW
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60

Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           +HY+ +T  + FV+DSS R+R+SEA +EL ++L++ EL +A LL+FANKQD+   +   E
Sbjct: 61  KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120

Query: 139 VADKLELYSL-GQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           + + L L+ L   R W IQ C A SG GLYEGLDWLS  +
Sbjct: 121 MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  182 bits (463), Expect = 2e-59
 Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 2/154 (1%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRAL 77
           ++L++GLD++GK+T+LYK+K  E+VTT PT+GFNVE ++  K+ S  VWDVGGQ K+R +
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           W+ Y  +T GL +VVDSSD  R+ E++ EL  IL +  +    +++ ANKQDLP  +   
Sbjct: 61  WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120

Query: 138 EVADKLELYSL-GQRRWSIQSCSAISGQGLYEGL 170
           E+  + +L      R W +Q CSA++G+GL E  
Sbjct: 121 EITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  182 bits (464), Expect = 2e-59
 Identities = 73/159 (45%), Positives = 108/159 (67%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LM+GLD +GKTTIL K    +I T +PT+GFN++ +EY      +WDVGGQ  +R+ 
Sbjct: 15  MRILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLRSY 74

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WR+YF  T  L +VVDSSDR R+ + + EL ++L +  L+ A LL+FANKQDLP  +   
Sbjct: 75  WRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALSPE 134

Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           E+ + LEL S+    W I  CSA++G+ L +G+DWL ++
Sbjct: 135 EIREVLELDSIKSHHWRIFGCSAVTGENLLDGIDWLVDD 173

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score =  172 bits (438), Expect = 2e-55
 Identities = 79/164 (48%), Positives = 104/164 (63%), Gaps = 6/164 (3%)

Query: 20  LLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-----KNKSFCVWDVGGQNKI 74
           ++M+GLD++GKTT+LY++K  E V T PT GFN E ++      K  +F  WDVGGQ K+
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKL 65

Query: 75  RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134
           R LW+ Y R T G+ FVVDS D ER+ EA+ ELH+I   +E     +LV ANKQDLPN +
Sbjct: 66  RPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNAL 125

Query: 135 PTAEVADKLELYSLGQRR-WSIQSCSAISGQGLYEGLDWLSNNI 177
           P +EV   L L+ L     W +Q   AI G+GL EGL+ L   I
Sbjct: 126 PVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEMI 169

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  154 bits (392), Expect = 1e-48
 Identities = 64/160 (40%), Positives = 103/160 (64%), Gaps = 4/160 (2%)

Query: 20  LLMVGLDASGKTTILYKMKLGEIVTTT--PTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +L++GLD SGKTTI+ ++K     +    PT+GFNVE+ +  N SF  +D+ GQ K R L
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL--LVFANKQDLPNVMP 135
           W HY+++  G+ FV+DSSDR R+  A++EL  +L+  ++ +  +  L +ANK DLP+ + 
Sbjct: 62  WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121

Query: 136 TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175
             ++   L L ++  + W I + SA++G+GL EG+DWL  
Sbjct: 122 AVKITQLLCLENIKDKPWHIFASSALTGEGLDEGVDWLQA 161

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score =  150 bits (381), Expect = 1e-46
 Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 12/171 (7%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           K++ +GLD +GKTT+L+ +K   +    PT+    E +   N  F  +D+GG  + R +W
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNVKFTTFDLGGHEQARRVW 80

Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           + YF +  G+ F+VD++D ER  E++ EL  +L+D EL+N  +L+  NK D P  +   E
Sbjct: 81  KDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDKPGAVSEEE 140

Query: 139 VADKLELY------------SLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           + + L LY                R   +  CS +  QG  EG  WLS  +
Sbjct: 141 LREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYGEGFRWLSQYL 191

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  132 bits (335), Expect = 8e-40
 Identities = 59/167 (35%), Positives = 101/167 (60%), Gaps = 16/167 (9%)

Query: 21  LMVGLDASGKTTILYKMK-----------LGEIVTTTPTIGFNVEAVEYKNKSFCVWDVG 69
           L++GLD +GKTT L + K             +I   TPT+G N+  +E        WD+G
Sbjct: 3   LILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKI---TPTVGLNIGTIEVGKARLMFWDLG 59

Query: 70  GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
           GQ ++R+LW  Y+ ++ G+ +V+DS+DRER +E+++   +++++  L    LLV ANKQD
Sbjct: 60  GQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQD 119

Query: 130 LPNVMPTAEVADKLE--LYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174
           LP+ +  AE+ +  +  +  +G+R   +Q  SA+ G+G+ EG++WL 
Sbjct: 120 LPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLV 166

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score =  130 bits (328), Expect = 6e-39
 Identities = 60/156 (38%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 22  MVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH 80
           +VGL  SGKTT++  +  G+    T PT+GFN+  V   N +  VWD+GGQ + R++W  
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMWER 63

Query: 81  YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVA 140
           Y R    + +VVD++DRE++  A+NELH +L    L    LLV  NK DLP  +   E+ 
Sbjct: 64  YCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELI 123

Query: 141 DKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           +++ L S+  R  S  S SA     +   LDWL  +
Sbjct: 124 EQMNLKSITDREVSCYSISAKEKTNIDIVLDWLIKH 159

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score =  124 bits (313), Expect = 1e-36
 Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 9/163 (5%)

Query: 20  LLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR 79
           LL VGLD +GKTT++  ++        PT+GF    +       C++D+GG    R +W 
Sbjct: 2   LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61

Query: 80  HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEV 139
           +Y+ +  GL FVVDSSD +R+ E +  L ++L    +S   +LV ANKQD  N +  A+V
Sbjct: 62  NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121

Query: 140 ADKLELYSLGQRRWS---IQSCSAISGQG------LYEGLDWL 173
            + L L  L     S   I+ CSAI G G      + EGL WL
Sbjct: 122 IEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score =  115 bits (290), Expect = 3e-33
 Identities = 55/146 (37%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 20  LLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +L++GLD +GKT++L+ +   E    +  PT GFN  A+  ++    + ++GG   +R  
Sbjct: 2   ILVLGLDGAGKTSLLHSLS-SERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKY 60

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           W+ Y   + GL FVVDS+D ER+  AR ELHQ+L      +  L+V ANKQDLP      
Sbjct: 61  WKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQ 118

Query: 138 EVADKLELYSLG-QRRWSIQSCSAIS 162
           E+  +LEL  +   RRW +Q  S   
Sbjct: 119 EIHKELELEPIARGRRWILQGTSLDD 144

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score =  113 bits (285), Expect = 3e-32
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 7/166 (4%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           K+L +GLD +GKTT+L+ +K   +    PT     E +   N  F  +D+GG  + R LW
Sbjct: 19  KILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLW 78

Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           + YF +  G+ ++VD+ D+ER +E++ EL  +LSD EL+    L+  NK D P      E
Sbjct: 79  KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDE 138

Query: 139 VADKLELYS-------LGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           +   L L +       +G R   +  CS +   G  EG  WLS  I
Sbjct: 139 LRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGYGEGFKWLSQYI 184

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 92.7 bits (230), Expect = 1e-23
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 5/121 (4%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEY----KNKSFCVWDVGGQ 71
             K++++G    GKTT+L ++   E      PTIG    A       +N    +WD  GQ
Sbjct: 5   EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64

Query: 72  NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
            + R+L   Y+R   G+  V DS+ RE   E   E  + L +    +  +L+  NK DL 
Sbjct: 65  EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124

Query: 132 N 132
           +
Sbjct: 125 D 125

Length = 219

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 75.1 bits (185), Expect = 1e-17
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 8/138 (5%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNVEA--VEYKNKS--FCVWDVGG 70
            IK+++VG    GK+T+L ++   +  I    P    N     +E   K+  F + D  G
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLVFANKQD 129
           Q    A+ R Y+R       V D       + E   +  + +  +  S   +++  NK D
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120

Query: 130 LPNV-MPTAEVADKLELY 146
           L +  + T       +L 
Sbjct: 121 LRDAKLKTHVAFLFAKLN 138

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 71.6 bits (176), Expect = 8e-16
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 21  LMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV---EYKNKSFCVWDVGGQNKIRA- 76
           L++G   SGKT +  K+  G++ +T  +I  NV +      K K   + DV G  K+R  
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRDK 63

Query: 77  LWRHYFRDTLGLTFVVDSSDRER-ISEARNELHQILSDNELSNAA--LLVFANKQDLPNV 133
           L  +       + FVVDS+  ++ I +    L+ IL+D E       +L+  NKQDL   
Sbjct: 64  LLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIPILIACNKQDLFTA 123

Query: 134 MPTAEVADKLE 144
            P  ++ + LE
Sbjct: 124 KPAKKIKELLE 134

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 69.0 bits (169), Expect = 3e-15
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 18/163 (11%)

Query: 23  VGLDASGKTTILYKMKLGEIVTTT-----PTIGFNVEAVEY--KNKSFCVWDVGGQNKIR 75
           VG    GK+++L  + LG  V         T   +V   E         + D  G ++  
Sbjct: 3   VGRGGVGKSSLLNAL-LGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFG 61

Query: 76  ALW-----RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
            L      R   R    +  VVDS+DRE   +A+  + + L         +++  NK DL
Sbjct: 62  GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKIDL 118

Query: 131 PNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
                  E+    EL  +      +   SA +G+G+ E  + L
Sbjct: 119 LEEREVEELLRLEELAKILGVP--VFEVSAKTGEGVDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 27/174 (15%)

Query: 18  IKLLMVGLDASGKTT---------------ILYKMKLGEIVTTTPTIGFNVEAVEYKNKS 62
            K++++G   +GKTT                   +       TT  +  +  ++E     
Sbjct: 11  TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTT--VAMDFGSIELDED- 67

Query: 63  FCVWDVG--GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             V   G  GQ + + +W    R  +G   +VDSS         +    I      +   
Sbjct: 68  TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----PITFHAEEIIDFLTSRNPIP 123

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS 174
           ++V  NKQDL + +P  ++ + L+L  L      I+   A  G+G  + LD L 
Sbjct: 124 VVVAINKQDLFDALPPEKIREALKLELLSVP--VIEID-ATEGEGARDQLDVLL 174

Length = 187

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 18  IKLLMVGLDAS-GKTTILYKMKLGE-IVTTTPTIG--FNVEAVEYKNKSFC--VWDVGGQ 71
            K++++G D+  GKT++L +    +       TIG  F  + +E   K     +WD  GQ
Sbjct: 1   FKIVLIG-DSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQ 59

Query: 72  NKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVFANKQ 128
            + R++   Y+R   G   V D ++R   E + +  NEL +        N  +++  NK 
Sbjct: 60  ERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPP----NIPIILVGNKS 115

Query: 129 DLPN 132
           DL +
Sbjct: 116 DLED 119

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 55.6 bits (134), Expect = 4e-10
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 20/148 (13%)

Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS------------ 62
           IKLL +G    GKTT LY+    K      TT  I F  + V Y ++             
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 63  FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
             +WD  GQ + R+L   +FRD +G   + D +  +     RN + Q+ +     N  ++
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIV 124

Query: 123 VFANKQDLP-----NVMPTAEVADKLEL 145
           +  NK DLP     +     E+ADK  +
Sbjct: 125 LIGNKADLPDQREVSERQARELADKYGI 152

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 9/165 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
           +K+L++G    GK+++L +          + TIG  F V+ V    K     +WD  GQ 
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R L   Y+R   G+  V D + R+        L+++ + +   +A  ++  NK D  N
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
              T E   K       +        SA +  G+ +  + L   I
Sbjct: 121 REVTREEGQKFAR----KHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 55.1 bits (133), Expect = 7e-10
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 21  LMVGLDASGKTTILYKMKLGEIVTTTPTI--GFNVEAVEYKNKSFCVWDVGGQNKIRA-- 76
           ++ GL  SGKT++   +  G +  T  +       + + +K  SF + D  G  K+R   
Sbjct: 7   IIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHVKLRQKL 66

Query: 77  LWRHYFRDTL-GLTFVVDSS-DRERISEARNELHQILSDNELSNAA--LLVFANKQDLPN 132
           L       +L G+ FVVDS+   + +++    L++ILS  EL      +L+  NKQ+   
Sbjct: 67  LETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNGIDILIACNKQESFT 126

Query: 133 VMPTAEVADKLE 144
             P  ++   LE
Sbjct: 127 ARPPKKIKQALE 138

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 52.1 bits (126), Expect = 6e-09
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 22/128 (17%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WD 67
            K++++G    GK+++L +   G+       TIG     V++K K+  V         WD
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG-----VDFKTKTIEVDGKRVKLQIWD 55

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVF 124
             GQ + R++   Y+R  +G   V D ++R   E +     EL +  S     N  +++ 
Sbjct: 56  TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYAS----PNVVIMLV 111

Query: 125 ANKQDLPN 132
            NK DL  
Sbjct: 112 GNKSDLEE 119

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK+ +L +        +   TIG  F +  +E   K     +WD  GQ 
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R +   Y+R  +G+  V D +D +     +N +  I  ++   +   ++  NK D+  
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNI-DEHASEDVERMLVGNKCDMEE 122

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 47  PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE--- 98
            T G      ++K   F ++DVGGQ   R  W H F D   + FVV  S+      E   
Sbjct: 154 KTTGIIETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDS 213

Query: 99  --RISEARNELHQILSDNELSNAALLVFANKQDL 130
             R+ E+ N   +I +     N  +++F NK+DL
Sbjct: 214 TNRLEESLNLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTP-TIG--FNVEAVEYKNKS--FCVWDVGGQNK 73
           K L++G   +GK+ +L++    +    +  TIG  F    V    KS    +WD  GQ +
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLVFANKQDL 130
            R++ R Y+R   G   V D + RE      N L   L+D       +  +++  NK+DL
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESF----NALTNWLTDARTLASPDIVIILVGNKKDL 117

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA----VEYKNKSFCVWDVGGQNK 73
           K++++G    GK+ IL +    E  + +  TIG         VE K     +WD  GQ +
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            RA+   Y+R  +G   V D + R+     +  L + L D+  SN  +++  NK DL ++
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE-LRDHADSNIVIMMAGNKSDLNHL 132

Query: 134 MPTAE 138
              AE
Sbjct: 133 RSVAE 137

Length = 216

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 29/174 (16%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           KL++VG    GK+++L +    +      PTIG  F  + +E   K+    +WD  GQ +
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFANKQDL 130
            RAL   Y+R   G   V D + R+     +    E+ +   +    N  +++  NK DL
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE----NVPIVLVGNKCDL 116

Query: 131 PN--VMPTAEVADKLELYSLGQ---RRWSIQ--SCSAISGQGLYEGLDWLSNNI 177
            +  V+ T E          G+   +   +     SA + + + E  + L+  I
Sbjct: 117 EDQRVVSTEE----------GEALAKELGLPFMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 47.4 bits (112), Expect = 6e-07
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE----AVEYKNKSFCVWDVGGQNKI 74
          K+L++G    GK+++L       +    PTIG + +     V  K     +WD  GQ + 
Sbjct: 16 KILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF 75

Query: 75 RALWRHYFRDTLGLTFVVDSSDRE 98
          R L   Y+R+  G+  V D + RE
Sbjct: 76 RTLTSSYYRNAQGIILVYDVTRRE 99

Length = 211

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 19  KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQNK 73
           KLL++G  + GKT+ L++           +T  I F V+ V   +K     +WD  GQ +
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
            R +   Y+R  +G   + D ++ E  +  ++   QI +     NA +++  NK D+
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT-YSWDNAQVILVGNKCDM 118

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 12/123 (9%)

Query: 18  IKLLMVGLDASGKTTILYKMKLG-----EIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN 72
            K++++G    GKT+++ +            TT  +       +  K     +WD  GQ 
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFANKQD 129
           +  AL   Y+RD  G   V D +D +   + +    EL Q+  +    N +L++  NK D
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKID 116

Query: 130 LPN 132
           L  
Sbjct: 117 LER 119

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTT-----PTIGFNVEAVEYKNKSFCVWDVGGQNK 73
           K++++G   SGK+++L ++  GE           T+  +   V+       +WD GG+ +
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL-SNAALLVFANKQ 128
           ++     + +    +  V D +DRE ++E    +  + +  +L     +++  NK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTP-TIG--FNVEAVEYKNKS--FCVWDVGGQNK 73
           K +++G    GK+ +L++    + +   P TIG  F    +E   +     +WD  GQ +
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSD---NELSNAALLVFANKQDL 130
            RA+ R Y+R   G   V D + R       N L   L+D       N  + +  NK DL
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTY----NHLSSWLTDARNLTNPNTVIFLIGNKADL 119

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 19  KLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQNK 73
           KLL++G    GK+++L +           TT  + F +  VE   +     +WD  GQ +
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
            R +   Y+R T G+  V D ++ E     +  L +I  + +     L+   NK D P
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLV--GNKNDDP 123

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNK--SFCVWDVGGQNK 73
           K++++G    GKT ++ + K G        TIG  F ++ +E + K     +WD  GQ +
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
            R + + Y+R   G     D + R       + + ++      SN  LL+  NK DL
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEV-EKYGASNVVLLLIGNKCDL 120

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 28/166 (16%)

Query: 19  KLLMVGLDASGKTTIL-----------YKMKLGEIVTTTPTIGFNVEAVEYKNKSFCV-- 65
           K+++VG  + GKT ++           YK  +G        + F +E  E     F +  
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG--------VDFEMERFEVLGVPFSLQL 53

Query: 66  WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA 125
           WD  GQ + + +   Y+R    +  V D +D   +   R  L   L +N+ S+  L +  
Sbjct: 54  WDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVG 113

Query: 126 NKQDL--PNVMPTAEVADKLELY-SLGQRRWSIQSCSAISGQGLYE 168
            K+DL  P      E  D ++L   +    W++   SA++G+ + +
Sbjct: 114 TKKDLSSPAQYALME-QDAIKLAREMKAEYWAV---SALTGENVRD 155

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206685 cd01898, Obg, Obg GTPase

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 26/140 (18%)

Query: 44  TT-TPTIGFNVEAVEYKN-KSFCVWDVGG------QNK---IRALWRHYFRDTLGLTFVV 92
           TT  P +G     V   + +SF + D+ G      + K    R L RH  R T  L  V+
Sbjct: 33  TTLVPNLGV----VRVDDGRSFVIADIPGLIEGASEGKGLGHRFL-RHIER-TRVLLHVI 86

Query: 93  DSSDRERISEA----RNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL 148
           D S  +   E     RNEL     +  L+    +V  NK DL       E  +KL+    
Sbjct: 87  DLSGEDDPVEDYETIRNELEAY--NPGLAEKPRIVVLNKIDLL---DAEERFEKLKELLK 141

Query: 149 GQRRWSIQSCSAISGQGLYE 168
             +   +   SA++G+GL E
Sbjct: 142 ELKGKKVFPISALTGEGLDE 161

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 47  PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RERIS 101
           PT G    A   K   F ++DVGGQ   R  W H F +   + F V  S+      E  S
Sbjct: 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDES 229

Query: 102 EAR-NELHQ----ILSDNELSNAALLVFANKQDL 130
             R  E       I +    +N ++++F NK DL
Sbjct: 230 TNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIV----TTTPTIGF--NVEAVEYKNKSFCVWDVGGQN 72
           K+++VG    GKT +L + K G  +      T  I F   V  V+       +WD  GQ 
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           + R++   Y+RD   L  + D +++      R  L +IL   + S+  +++  NK D+
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ-SDVVIMLLGNKADM 118

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 17 RIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY-KNKS---FCVWDVGGQ 71
            KL++VG   +GKTT + +   GE      PTIG  V  +++  N     F  WD  GQ
Sbjct: 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72

Query: 72 NKIRALWRHYF 82
           K   L   Y+
Sbjct: 73 EKFGGLRDGYY 83

Length = 219

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 24/146 (16%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WDV 68
           K++++G    GK+ +L +    E  + +  TIG     VE+  ++  +         WD 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIG-----VEFATRTIQIDGKTIKAQIWDT 59

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVFA 125
            GQ + RA+   Y+R  +G   V D + +   E +     EL     D+  SN  +++  
Sbjct: 60  AGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELR----DHADSNIVIMLVG 115

Query: 126 NKQDLPN--VMPTAEVADKLELYSLG 149
           NK DL +   +PT E     E   L 
Sbjct: 116 NKSDLRHLRAVPTEEAKAFAEKNGLS 141

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 19  KLLMVGLDASGKTT----ILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNK 73
           K+L++GL  SGK++    I       + +    TI      V +  N +  +WD  GQ+ 
Sbjct: 1   KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD 60

Query: 74  IRALWRHYFRDTLG-----LTFVVDSSDRERISEARNELHQILSD-NELS-NAALLVFAN 126
               +    ++ +      L +V D   RE   E    L +I+    + S NA + V  +
Sbjct: 61  FMENYLTRQKEHIFSNVGVLIYVFDVESRE-YEEDLATLVKIIEALYQYSPNAKVFVLIH 119

Query: 127 KQDL 130
           K DL
Sbjct: 120 KMDL 123

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 15/126 (11%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFCV--WDVGGQN 72
           IK++ +G    GK+ I+ +   G  V+   PTIG  + V+ V  +NK   V  +D+ G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRER-------ISEARNELHQILSDNELSNAALLVFA 125
           +   +   +++DT G+  V D +DR+        + E + E         + N  ++V A
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEG---GPHGNMENIVVVVCA 117

Query: 126 NKQDLP 131
           NK DL 
Sbjct: 118 NKIDLT 123

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 20/138 (14%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKS--FCVWDVGGQ 71
           + KL+++G  + GK++I+ +    E       TIG  F  + V   + +  F +WD  GQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 72  NKIRALWRHYFRDTLGLTFVVDSSDRERISEAR---NELHQILSDNELSNAALLVFA--- 125
            + R+L   Y+R       V D +  E   +A+    EL +    N       +V A   
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPN-------IVIALAG 113

Query: 126 NKQDLPN--VMPTAEVAD 141
           NK DL +   + T E  +
Sbjct: 114 NKADLESKRQVSTEEAQE 131

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKSFC---VWDVGGQN 72
           +L+++G    GK+++L +   G     + PT+G  F    +E +        +WD  GQ 
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R++ R Y+R+++G+  V D ++RE      + L +  S  +      ++  +K DL +
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 48  TIG--FNVEAVEYKNKS--FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEA 103
           TIG  F    +    K     +WD  GQ   R++ R Y+R   G   V D + RE  +  
Sbjct: 36  TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL 95

Query: 104 RNELHQILSDNELSNAALLVFANKQDLP 131
            + L      +  SN  +++  NK DL 
Sbjct: 96  TSWLEDA-RQHSNSNMTIMLIGNKCDLE 122

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 19  KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQNK 73
           K +++G    GK+ +L +    +   +   T  + F    +   NK     +WD  GQ  
Sbjct: 8   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQES 67

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSD---NELSNAALLVFANKQDL 130
            R++ R Y+R   G   V D + RE      N L   L D   +  +N  +++  NK DL
Sbjct: 68  FRSITRSYYRGAAGALLVYDITRRETF----NHLASWLEDARQHANANMTIMLIGNKCDL 123

Length = 210

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 24/145 (16%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFCV----------- 65
           IK+++VG    GK++++ +   G        TIG     V++  K   +           
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG-----VDFLEKQIFLRQSDEDVRLML 55

Query: 66  WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA 125
           WD  GQ +  A+ + Y+R       V  ++DRE  S    E  +   + E  +  +++  
Sbjct: 56  WDTAGQEEFDAITKAYYRGAQACILVFSTTDRE--SFEAIESWKEKVEAECGDIPMVLVQ 113

Query: 126 NKQDLPN--VMPTAEV---ADKLEL 145
            K DL +  V+   E    A +L+L
Sbjct: 114 TKIDLLDQAVITNEEAEALAKRLQL 138

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTP-TIGFNVE-----AVEYKNKSFCVWDVGG 70
            KL++VG    GKT++  ++   +       T G NV+     A E K     VWD GG
Sbjct: 1  EAKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGG 60

Query: 71 Q 71
          Q
Sbjct: 61 Q 61

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKS----FCVWDVGGQN 72
           KL++VG   +GKTT + +   GE       T+G  V  +++        F VWD  GQ 
Sbjct: 1  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 73 KIRALWRHYFRDTLGLTFVVDSSDRE 98
          K   L   Y+        + D + R 
Sbjct: 61 KFGGLRDGYYIQGQCAIIMFDVTSRV 86

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 19 KLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKSFCV--WDVGGQNK 73
          K++++G    GKT + Y+   G     T  TIG  F    VE   +   V  WD  GQ +
Sbjct: 4  KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 74 IR-ALWRHYFRDTLGLTFVVD 93
           R ++ +HY+R+   + FV D
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYD 84

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 16/126 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCV---------WDV 68
           +K++++G    GK++++ +     +     T  F+   VE+ NK   V         WD 
Sbjct: 6   LKVILLGDGGVGKSSLMNRY----VTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61

Query: 69  GGQNKIRALWRHYFR--DTLGLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLVFA 125
            GQ + R+L   ++R  D   LTF VD S   + +S  + E        E  +   ++  
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 121

Query: 126 NKQDLP 131
           NK D+P
Sbjct: 122 NKIDIP 127

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA-VEYKNKSFCV--WDVGGQ-- 71
          IK+++VG  A GKT +L      +  T   PT+  N  A V    K   +  WD  GQ  
Sbjct: 1  IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 72 -NKIRAL 77
           +++R L
Sbjct: 61 YDRLRPL 67

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 41  EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE 98
           E   +T  + F ++ VE + K     +WD  GQ +  ++   Y+R   G+  V D + +E
Sbjct: 27  EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE 86

Query: 99  RISEARNELHQILSDNELS-NAALLVFANKQD 129
              +    +  I  D   S +A LL+  NK D
Sbjct: 87  TFDDLPKWMKMI--DKYASEDAELLLVGNKLD 116

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 17 RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVE-YKNKS---FCVWDVGGQ 71
            KL++VG    GKTT + +   GE      PT+G  V  ++ Y N     F VWD  GQ
Sbjct: 9  EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68

Query: 72 NKIRALWRHYF 82
           K   L   Y+
Sbjct: 69 EKFGGLRDGYY 79

Length = 215

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 12/122 (9%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKS--FCVWDVGGQNK 73
           KLL++G    GK+ +L +        +   TIG  F +  +E   K+    +WD  GQ +
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEAR---NELHQILSDNELSNAALLVFANKQDL 130
            R +   Y+R   G+  V D +D+E  +  +    E+ +  S+N      LLV  NK DL
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK---LLV-GNKCDL 119

Query: 131 PN 132
            +
Sbjct: 120 TD 121

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	100.0
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	100.0
smart00178	184	SAR Sar1p-like members of the Ras-family of small	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	100.0
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	100.0
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	100.0
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	100.0
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.98
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.98
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.98
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.98
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.98
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.98
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.98
PLN03110	216	Rab GTPase; Provisional	99.98
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.98
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.98
PLN03118	211	Rab family protein; Provisional	99.98
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.97
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
PLN03108	210	Rab family protein; Provisional	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.96
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.96
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.95
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.95
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.94
PRK03003	472	GTP-binding protein Der; Reviewed	99.94
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.94
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.94
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.94
PRK15494	339	era GTPase Era; Provisional	99.93
cd00881	189	GTP_translation_factor GTP translation factor fami	99.93
PRK12299	335	obgE GTPase CgtA; Reviewed	99.93
PRK04213	201	GTP-binding protein; Provisional	99.93
PRK03003	472	GTP-binding protein Der; Reviewed	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
PLN00023	334	GTP-binding protein; Provisional	99.93
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.93
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.93
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.93
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.92
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.92
PTZ00099	176	rab6; Provisional	99.92
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.92
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.92
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
COG1160	444	Predicted GTPases [General function prediction onl	99.91
PRK00089	292	era GTPase Era; Reviewed	99.91
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.91
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.91
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.91
COG1159	298	Era GTPase [General function prediction only]	99.91
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.91
PRK11058	426	GTPase HflX; Provisional	99.91
PRK00093	435	GTP-binding protein Der; Reviewed	99.91
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.91
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.9
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
COG1160	444	Predicted GTPases [General function prediction onl	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
PRK00093	435	GTP-binding protein Der; Reviewed	99.9
PRK12297	424	obgE GTPase CgtA; Reviewed	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.89
PRK05306	787	infB translation initiation factor IF-2; Validated	99.89
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.89
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
KOG1673	205	consensus Ras GTPases [General function prediction	99.88
CHL00189	742	infB translation initiation factor 2; Provisional	99.88
PRK05433	600	GTP-binding protein LepA; Provisional	99.87
PRK12317	425	elongation factor 1-alpha; Reviewed	99.87
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.87
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.87
COG0218	200	Predicted GTPase [General function prediction only	99.87
COG2229	187	Predicted GTPase [General function prediction only	99.87
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.86
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.86
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.86
COG0486	454	ThdF Predicted GTPase [General function prediction	99.86
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.86
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.86
PRK10218	607	GTP-binding protein; Provisional	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.85
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.85
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.84
PRK04004	586	translation initiation factor IF-2; Validated	99.84
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.84
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.84
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.84
PRK12736	394	elongation factor Tu; Reviewed	99.82
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.82
PRK12735	396	elongation factor Tu; Reviewed	99.81
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.81
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.8
PRK13351	687	elongation factor G; Reviewed	99.8
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.79
CHL00071	409	tufA elongation factor Tu	99.79
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.79
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.79
COG2262	411	HflX GTPases [General function prediction only]	99.79
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.78
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.78
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.78
PRK00049	396	elongation factor Tu; Reviewed	99.78
PLN03126	478	Elongation factor Tu; Provisional	99.78
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.77
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.77
PLN00043	447	elongation factor 1-alpha; Provisional	99.77
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.77
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.77
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.77
KOG0090	238	consensus Signal recognition particle receptor, be	99.77
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.76
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.76
PTZ00141	446	elongation factor 1- alpha; Provisional	99.76
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.76
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.75
PLN03127	447	Elongation factor Tu; Provisional	99.75
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.74
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.74
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.74
COG1084	346	Predicted GTPase [General function prediction only	99.74
KOG1145	683	consensus Mitochondrial translation initiation fac	99.73
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.73
PRK12739	691	elongation factor G; Reviewed	99.72
COG3596	296	Predicted GTPase [General function prediction only	99.72
COG1163	365	DRG Predicted GTPase [General function prediction	99.72
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.72
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.71
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.71
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.71
PRK00007	693	elongation factor G; Reviewed	99.7
COG0536	369	Obg Predicted GTPase [General function prediction	99.7
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.69
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.68
PRK12740	668	elongation factor G; Reviewed	99.68
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.67
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.67
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.67
PRK09866	741	hypothetical protein; Provisional	99.66
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.64
PRK13768	253	GTPase; Provisional	99.63
PRK09602	396	translation-associated GTPase; Reviewed	99.61
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.6
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.59
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.58
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.56
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.55
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.54
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.54
PRK14845	1049	translation initiation factor IF-2; Provisional	99.54
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.52
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.52
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.52
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.52
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.51
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.51
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.49
PTZ00416	836	elongation factor 2; Provisional	99.47
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.46
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.45
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.45
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.44
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.43
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.43
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.43
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.41
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.39
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.39
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.38
PRK07560	731	elongation factor EF-2; Reviewed	99.37
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.36
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.36
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.35
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.35
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.35
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.33
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.32
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.27
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.26
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.26
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.25
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.24
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.24
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.23
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.21
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.21
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.21
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.21
KOG0410	410	consensus Predicted GTP binding protein [General f	99.2
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.16
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.13
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.13
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.12
PTZ00258	390	GTP-binding protein; Provisional	99.1
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.08
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.06
PRK12289	352	GTPase RsgA; Reviewed	99.06
PRK09601	364	GTP-binding protein YchF; Reviewed	99.04
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.03
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.03
KOG0099	379	consensus G protein subunit Galphas, small G prote	99.02
PRK12288	347	GTPase RsgA; Reviewed	99.0
COG1161	322	Predicted GTPases [General function prediction onl	99.0
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.0
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.0
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.99
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.98
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.96
PRK00098	298	GTPase RsgA; Reviewed	98.96
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.93
KOG0460	449	consensus Mitochondrial translation elongation fac	98.91
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.91
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.9
KOG2486	320	consensus Predicted GTPase [General function predi	98.9
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.89
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.88
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.88
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.87
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.87
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.85
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.85
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.83
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.77
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.76
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.76
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.73
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.72
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.71
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.68
KOG1143	591	consensus Predicted translation elongation factor	98.67
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.64
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.62
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.61
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.58
PRK13796	365	GTPase YqeH; Provisional	98.56
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.55
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.55
PRK12289	352	GTPase RsgA; Reviewed	98.54
PRK13796	365	GTPase YqeH; Provisional	98.53
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.52
PRK12288	347	GTPase RsgA; Reviewed	98.51
cd03112	158	CobW_like The function of this protein family is u	98.47
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.46
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.46
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.46
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.44
PRK14974	336	cell division protein FtsY; Provisional	98.43
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.4
PRK10416	318	signal recognition particle-docking protein FtsY;	98.38
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.37
PRK01889	356	GTPase RsgA; Reviewed	98.36
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.3
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.3
PRK00098	298	GTPase RsgA; Reviewed	98.29
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.28
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.26
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.22
cd03114	148	ArgK-like The function of this protein family is u	98.21
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.18
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.15
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.11
COG1162	301	Predicted GTPases [General function prediction onl	98.07
PRK13695	174	putative NTPase; Provisional	98.06
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.06
COG1162	301	Predicted GTPases [General function prediction onl	98.04
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.02
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.01
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	98.01
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.01
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.0
COG3523	1188	IcmF Type VI protein secretion system component Va	98.0
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.99
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.98
cd03111	106	CpaE_like This protein family consists of proteins	97.96
KOG2484	435	consensus GTPase [General function prediction only	97.96
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.94
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.93
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.91
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.91
COG0523	323	Putative GTPases (G3E family) [General function pr	97.89
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.87
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.86
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.82
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.81
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.8
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.78
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.77
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.76
PRK10867	433	signal recognition particle protein; Provisional	97.73
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.72
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.72
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.71
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.7
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.7
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.69
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.68
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.68
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.66
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.66
PRK08118	167	topology modulation protein; Reviewed	97.63
PRK07261	171	topology modulation protein; Provisional	97.63
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.62
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.62
PRK04195	482	replication factor C large subunit; Provisional	97.6
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.58
TIGR00959	428	ffh signal recognition particle protein. This mode	97.58
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.57
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.55
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.55
KOG1533	290	consensus Predicted GTPase [General function predi	97.53
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.53
PRK05480	209	uridine/cytidine kinase; Provisional	97.53
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.52
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.52
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.52
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.51
PRK06547	172	hypothetical protein; Provisional	97.51
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.49
PRK01889	356	GTPase RsgA; Reviewed	97.47
PRK08233	182	hypothetical protein; Provisional	97.47
PRK14530	215	adenylate kinase; Provisional	97.46
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.42
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.42
PHA00729	226	NTP-binding motif containing protein	97.42
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.42
PF05729	166	NACHT: NACHT domain	97.41
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.4
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.4
cd03116	159	MobB Molybdenum is an essential trace element in t	97.4
cd02036	179	MinD Bacterial cell division requires the formatio	97.4
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.4
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.4
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.39
PF00004	132	AAA: ATPase family associated with various cellula	97.38
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.38
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.37
PRK06217	183	hypothetical protein; Validated	97.34
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.34
PRK03839	180	putative kinase; Provisional	97.33
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.33
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.32
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.31
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.31
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.31
smart00382	148	AAA ATPases associated with a variety of cellular	97.3
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.3
PRK14738	206	gmk guanylate kinase; Provisional	97.29
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.29
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.28
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.28
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.28
PTZ00301	210	uridine kinase; Provisional	97.27
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.26
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.26
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.24
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.23
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.22
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	97.22
PRK14532	188	adenylate kinase; Provisional	97.22
PTZ00088	229	adenylate kinase 1; Provisional	97.21
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.21
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.21
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.2
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.2
PRK14531	183	adenylate kinase; Provisional	97.19
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.19
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.18

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=3.1e-39  Score=219.23  Aligned_cols=180  Identities=69%  Similarity=1.111  Sum_probs=158.6

Q ss_pred             CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233            1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~   80 (181)
                      ||.+++.+.+..+.++.++|+++|+++||||||++++..+.+..+.||.+.+...+...+..+.+||+||++.+..++..
T Consensus         1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~   80 (181)
T PLN00223          1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH   80 (181)
T ss_pred             CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence            88888888777777888999999999999999999999888777789999888778888999999999999999999999


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +++++|++|+|+|+++++++.....++..++.....++.|+++++||+|+.+..+.+++.+.++......+.+.++++||
T Consensus        81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa  160 (181)
T PLN00223         81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA  160 (181)
T ss_pred             HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence            99999999999999999999999888888876655568999999999999887777888877765544445667889999


Q ss_pred             cCCCCHHHHHHHHHhhhhcc
Q 030233          161 ISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ++|+|++++|++|.+.+.++
T Consensus       161 ~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        161 TSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCCCCHHHHHHHHHHHHhhc
Confidence            99999999999999988765

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=2.5e-38  Score=214.99  Aligned_cols=180  Identities=64%  Similarity=1.063  Sum_probs=156.4

Q ss_pred             CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233            1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~   80 (181)
                      ||.+++++.++.+..++++|+++|++++|||||++++..+.+..+.||.+.+...+...+..+.+|||||++.+...+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~   80 (182)
T PTZ00133          1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH   80 (182)
T ss_pred             CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            88888899888887888999999999999999999998888777788888887777788899999999999999999999


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +++.+|++|+|+|+++++++.....++..++......++|+++|+||.|+.+..+.+++...+.........+.++++||
T Consensus        81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa  160 (182)
T PTZ00133         81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA  160 (182)
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence            99999999999999999999999888888876544457899999999999776666777776665544455667889999


Q ss_pred             cCCCCHHHHHHHHHhhhhcc
Q 030233          161 ISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ++|.|++++|++|.+.+.++
T Consensus       161 ~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        161 TTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999877653

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=3.9e-37  Score=208.10  Aligned_cols=174  Identities=66%  Similarity=1.101  Sum_probs=148.4

Q ss_pred             CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233            1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~   80 (181)
                      ||.+++.+    +.+++++|+++|++|+|||||++++..+.+..+.||.+.....+......+.+||+||++.+...+..
T Consensus         1 ~~~~~~~~----~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~   76 (175)
T smart00177        1 MGKLFSKL----FGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRH   76 (175)
T ss_pred             Cchhhhhh----cCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHH
Confidence            67765544    33557999999999999999999998777767788888877777778899999999999999999999


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +++++|++|+|+|++++++++....++..++......+.|+++|+||+|+.+..+.+++.+...........+.++++||
T Consensus        77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa  156 (175)
T smart00177       77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCA  156 (175)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeC
Confidence            99999999999999999999999999988876644467999999999999876667777777665544556677889999


Q ss_pred             cCCCCHHHHHHHHHhhhh
Q 030233          161 ISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~  178 (181)
                      ++|+|++++|++|.+.+.
T Consensus       157 ~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      157 TSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             CCCCCHHHHHHHHHHHhc
Confidence            999999999999988754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-38  Score=206.93  Aligned_cols=161  Identities=21%  Similarity=0.335  Sum_probs=134.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +.+||+++|++|+|||+|+.||+++.++ .+..|+|++.....+    ...++++|||+|+++|+.+...+|++++++|+
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~   87 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF   87 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence            5689999999999999999999999965 467889877665443    56799999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEE-EEEeeccCCCCHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWS-IQSCSAISGQGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l  169 (181)
                      |||+++.+||..+..|+.++.+... .++|.++||||||+.+..   .+....+...+...+++ ++++||+++.|+++.
T Consensus        88 vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~---~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~  163 (205)
T KOG0084|consen   88 VYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKR---VVSTEEAQEFADELGIPIFLETSAKDSTNVEDA  163 (205)
T ss_pred             EEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhhe---ecCHHHHHHHHHhcCCcceeecccCCccCHHHH
Confidence            9999999999999999999866543 678999999999997632   22222222222345556 999999999999999


Q ss_pred             HHHHHhhhhcc
Q 030233          170 LDWLSNNISVK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |..++..+.++
T Consensus       164 F~~la~~lk~~  174 (205)
T KOG0084|consen  164 FLTLAKELKQR  174 (205)
T ss_pred             HHHHHHHHHHh
Confidence            99999988765

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-37  Score=202.61  Aligned_cols=166  Identities=19%  Similarity=0.307  Sum_probs=142.2

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTL   86 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d   86 (181)
                      ..+.+.+|++++|+.++||||||+|++.+.+. .+.+|+|++...  +.+  ..+.+++|||+|+|+|+.+.+.+++++.
T Consensus        17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~   96 (221)
T KOG0094|consen   17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   96 (221)
T ss_pred             CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence            34567799999999999999999999999975 578899876544  444  5578999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ++|+|||+++..||.....|+..++..++..++.+++||||.||.+   .+++..+.+...+...+..|+++||+.|+||
T Consensus        97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d---krqvs~eEg~~kAkel~a~f~etsak~g~NV  173 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD---KRQVSIEEGERKAKELNAEFIETSAKAGENV  173 (221)
T ss_pred             EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc---hhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence            9999999999999999999999999988766799999999999987   3444444444444566778999999999999


Q ss_pred             HHHHHHHHhhhhcc
Q 030233          167 YEGLDWLSNNISVK  180 (181)
Q Consensus       167 ~~l~~~i~~~~~~~  180 (181)
                      ..+|..|...+...
T Consensus       174 k~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  174 KQLFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHHHhccCc
Confidence            99999999887654

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=1.6e-36  Score=203.74  Aligned_cols=163  Identities=62%  Similarity=1.063  Sum_probs=140.9

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +.++.++|+++|++++|||||++++..+.+..+.||.+.+...+...+..+.+|||||++.+...+..+++.+|++++|+
T Consensus         5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~   84 (168)
T cd04149           5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV   84 (168)
T ss_pred             cCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence            34567999999999999999999999888777788888887777778899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      |++++.++.+...++..++......+.|+++|+||+|+.+....+++.+...........+.++++||++|.|++++|++
T Consensus        85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~  164 (168)
T cd04149          85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW  164 (168)
T ss_pred             eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence            99999999999999988876544467899999999999766667777777655444445568999999999999999999


Q ss_pred             HHh
Q 030233          173 LSN  175 (181)
Q Consensus       173 i~~  175 (181)
                      |.+
T Consensus       165 l~~  167 (168)
T cd04149         165 LSS  167 (168)
T ss_pred             Hhc
Confidence            975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.1e-38  Score=204.62  Aligned_cols=160  Identities=21%  Similarity=0.344  Sum_probs=135.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccc-cCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ..++|++++|+.++|||||+-|+..+.|.+. .+|+|-...+  +...  .++|.||||+|+++|.++.+.++++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4679999999999999999999999998775 8899855444  4444  488999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|||+++.+||.....|+..+-+... +++-+.+||||+|+.+  ..+.++....     +...+..|+++||++|.|++
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~y-----Ae~~gll~~ETSAKTg~Nv~  156 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAY-----AESQGLLFFETSAKTGENVN  156 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHH-----HHhcCCEEEEEecccccCHH
Confidence            99999999999999999999866543 7788889999999976  3333333332     24567789999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|..|.+.+...
T Consensus       157 ~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  157 EIFQAIAEKLPCS  169 (200)
T ss_pred             HHHHHHHHhccCc
Confidence            9999999998754

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=1e-35  Score=198.26  Aligned_cols=158  Identities=73%  Similarity=1.177  Sum_probs=136.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR   97 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   97 (181)
                      +||+++|.++||||||++++..+.+..+.||.+.+...+......+.+||+||++.+...+..+++++|++++|+|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~   80 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence            58999999999999999999888877778888888777778889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233           98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      ++++....++..++......+.|+++++||+|+.+....+++........+....+.++++||++|+|++++|++|.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            999999998888876544457899999999999765555666665554444455677899999999999999999975

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=100.00  E-value=2.8e-35  Score=198.94  Aligned_cols=172  Identities=48%  Similarity=0.882  Sum_probs=147.4

Q ss_pred             hHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc
Q 030233            4 LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   83 (181)
                      ++.+..+.+.+++.++|+++|++++|||||+++++++.+....+|.+.+...+.+.+..+.+||+||++.+...+..+++
T Consensus         2 ~~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~   81 (174)
T cd04153           2 LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYT   81 (174)
T ss_pred             chhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhh
Confidence            34556666666678999999999999999999999888777888988888888888999999999999999999999999


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      .+|++++|+|+++++++.....++..+++.....+.|+++++||+|+....+.+++.+.+.........++++++||++|
T Consensus        82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g  161 (174)
T cd04153          82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG  161 (174)
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence            99999999999999999888888888877654467999999999999775566777776654444455678999999999


Q ss_pred             CCHHHHHHHHHh
Q 030233          164 QGLYEGLDWLSN  175 (181)
Q Consensus       164 ~~i~~l~~~i~~  175 (181)
                      +|++++|++|.+
T Consensus       162 ~gi~e~~~~l~~  173 (174)
T cd04153         162 EGLPEGLDWIAS  173 (174)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=6.1e-35  Score=197.17  Aligned_cols=164  Identities=43%  Similarity=0.859  Sum_probs=141.0

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ..++..++|+++|++|+|||||++++.+..+..+.+|.++....+.+....+.+||+||++.+...+..+++.+|++++|
T Consensus         9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v   88 (173)
T cd04154           9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWV   88 (173)
T ss_pred             hcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            34566799999999999999999999988877778888887777778889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +|++++.++.....++..++......+.|+++|+||+|+.+....+++...+.........++++++||++|+|++++|+
T Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  168 (173)
T cd04154          89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGID  168 (173)
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence            99999999999888888887654446899999999999977666666666665433345677899999999999999999


Q ss_pred             HHHh
Q 030233          172 WLSN  175 (181)
Q Consensus       172 ~i~~  175 (181)
                      ++.+
T Consensus       169 ~l~~  172 (173)
T cd04154         169 WLVD  172 (173)
T ss_pred             HHhc
Confidence            9864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=9.9e-35  Score=196.06  Aligned_cols=173  Identities=49%  Similarity=0.888  Sum_probs=157.5

Q ss_pred             HHHHhhhhCC-CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc
Q 030233            5 ISRLAKRFFP-QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR   83 (181)
Q Consensus         5 ~~~~~~~~~~-~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   83 (181)
                      |+.+.+.... .+..+|+++|..++||||+++++..+......||.|++...+.+.+..+.+||.+|+..++..|..++.
T Consensus         1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~   80 (175)
T PF00025_consen    1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ   80 (175)
T ss_dssp             HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred             CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence            3455556554 789999999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccC-CccEEEEEeeccC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLG-QRRWSIQSCSAIS  162 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~  162 (181)
                      .+|++|||+|.++++.+.+....+..++......+.|+++++||.|+.+..+.+++...+...... ...+.++.|||.+
T Consensus        81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~  160 (175)
T PF00025_consen   81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT  160 (175)
T ss_dssp             TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred             ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence            999999999999999999999999999988777789999999999999888899999888766654 6788999999999


Q ss_pred             CCCHHHHHHHHHhhh
Q 030233          163 GQGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (181)
                      |+|+.+.++||.+++
T Consensus       161 g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  161 GEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcC
Confidence            999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-35  Score=191.95  Aligned_cols=180  Identities=67%  Similarity=1.091  Sum_probs=173.1

Q ss_pred             CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233            1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~   80 (181)
                      ||.++++++..+++.++.+|+++|-.++||||++.++..+++..+.||+|++...+.+.+..+++||.+|+++++..|..
T Consensus         1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~   80 (181)
T KOG0070|consen    1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH   80 (181)
T ss_pred             CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence            89999999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +++..+++|||+|.++++.+.+.++.+..++.+....+.|+++++||.|++...+..++...+.+.....+.+.+..|+|
T Consensus        81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a  160 (181)
T KOG0070|consen   81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA  160 (181)
T ss_pred             hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence            99999999999999999999999999999999987789999999999999999999999999999988889999999999


Q ss_pred             cCCCCHHHHHHHHHhhhhcc
Q 030233          161 ISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~  180 (181)
                      .+|+|+.+.++|+.+.+..+
T Consensus       161 ~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  161 ISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             cccccHHHHHHHHHHHHhcc
Confidence            99999999999999998765

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=2.7e-34  Score=193.32  Aligned_cols=161  Identities=53%  Similarity=0.960  Sum_probs=137.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      ||+++|+++||||||++++.+..+..+.||.+.....+...+..+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~   80 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence            58999999999999999999988777888888877777888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233           99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      +++....|+..+++.....+.|+++|+||+|+.+..+.+++......... ....+.+++|||++|.|++++|++|.+.+
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158          81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence            99999999999887654467899999999999776666666665543221 12345789999999999999999999876


Q ss_pred             hc
Q 030233          178 SV  179 (181)
Q Consensus       178 ~~  179 (181)
                      .+
T Consensus       161 ~~  162 (169)
T cd04158         161 VA  162 (169)
T ss_pred             hh
Confidence            54

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=100.00  E-value=2.3e-34  Score=183.14  Aligned_cols=172  Identities=42%  Similarity=0.822  Sum_probs=157.5

Q ss_pred             HhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233            8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus         8 ~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      +.+.-...++++|+++|..|+||||+++++.+.+.....||.|++.....+.+..+++||.+|+..+++.|.++|..+|+
T Consensus         7 lrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen    7 LRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             HHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            33333456699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCH
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i  166 (181)
                      +|+|+|.+++..+++....+..++......+.|+++++||.|+....+.+++....++... +...++++.|||.+|+++
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            9999999999999999999988887766678999999999999988899999998887766 788999999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 030233          167 YEGLDWLSNNISV  179 (181)
Q Consensus       167 ~~l~~~i~~~~~~  179 (181)
                      .+-++|+++.+.+
T Consensus       167 ~~gidWL~~~l~~  179 (185)
T KOG0073|consen  167 LEGIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=100.00  E-value=1.2e-33  Score=192.39  Aligned_cols=173  Identities=33%  Similarity=0.586  Sum_probs=146.6

Q ss_pred             HHHHhhhh-CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc
Q 030233            5 ISRLAKRF-FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR   83 (181)
Q Consensus         5 ~~~~~~~~-~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   83 (181)
                      +.++.+.+ .+.+.++|+++|.+|+|||||++++.++.+..+.||.+.+...+...+..+.+||+||++.++..+..++.
T Consensus         4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~   83 (184)
T smart00178        4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP   83 (184)
T ss_pred             HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC
Confidence            44555544 34788999999999999999999999988766677777777777778899999999999999999999999


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-------CCccEEEE
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-------GQRRWSIQ  156 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  156 (181)
                      .+|++++|+|+++++++.....++..+++.....+.|+++++||+|+....+.+++.+.+.....       ..+...++
T Consensus        84 ~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~  163 (184)
T smart00178       84 EVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVF  163 (184)
T ss_pred             CCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence            99999999999999999998888888876544467999999999999877788888887765432       22567899


Q ss_pred             EeeccCCCCHHHHHHHHHhhh
Q 030233          157 SCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       157 ~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      +|||++|+|++++++||.+++
T Consensus       164 ~~Sa~~~~g~~~~~~wl~~~~  184 (184)
T smart00178      164 MCSVVRRMGYGEGFKWLSQYI  184 (184)
T ss_pred             EeecccCCChHHHHHHHHhhC
Confidence            999999999999999998753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-35  Score=194.33  Aligned_cols=162  Identities=22%  Similarity=0.344  Sum_probs=136.0

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      ..+.++|+++|+++||||+++.+|..+.+. .+..|+|++...  +..  ....+++|||+|+++++.+...+++.++++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi   88 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   88 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence            346789999999999999999999999865 456777766554  444  457899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      ++|||++++.||.++..|+..+-++. ..++|.++||||+|+..   .+++....+...+.+.++.|+|+||++|.||++
T Consensus        89 ~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~---~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e  164 (207)
T KOG0078|consen   89 LLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEE---KRQVSKERGEALAREYGIKFFETSAKTNFNIEE  164 (207)
T ss_pred             EEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccc---cccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence            99999999999999999988886654 36899999999999876   333444444444456788999999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      .|-.|++.+.+
T Consensus       165 aF~~La~~i~~  175 (207)
T KOG0078|consen  165 AFLSLARDILQ  175 (207)
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.4e-34  Score=197.12  Aligned_cols=158  Identities=18%  Similarity=0.296  Sum_probs=127.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...+||+++|+.|+|||||+.+++.+.+. .+.++.+....  .+...  ...+.+|||+|++.+..++..+++.+|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35689999999999999999999988764 34456555443  33343  378899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|||++++++|+.+..|+..+....  ++.|+++|+||+|+...  .+.++.....     +..+++|++|||++|.|++
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~  156 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNIT  156 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence            9999999999999999999886543  58999999999998652  2333333322     2345689999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|+++.+.+..
T Consensus       157 ~~F~~l~~~i~~  168 (189)
T cd04121         157 ESFTELARIVLM  168 (189)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987764

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.7e-34  Score=198.41  Aligned_cols=157  Identities=18%  Similarity=0.301  Sum_probs=124.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++|+++|+.|+|||||+++++.+.+.. +.+|++....  .+.+.+  ..+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            478999999999999999999988754 5677765443  455544  78899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+++++||+.+..|+..+... ...+.|+++|+||+|+.+..  ..++..+...    ...++.|++|||++|+|++++|
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~----~~~~~~~~etSAktg~gV~e~F  155 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ----QITGMRFCEASAKDNFNVDEIF  155 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHH
Confidence            999999999999988766433 33679999999999986422  2222211110    1124579999999999999999


Q ss_pred             HHHHhhhhc
Q 030233          171 DWLSNNISV  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      +++.+.+.+
T Consensus       156 ~~l~~~~~~  164 (202)
T cd04120         156 LKLVDDILK  164 (202)
T ss_pred             HHHHHHHHH
Confidence            999987754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-35  Score=189.88  Aligned_cols=161  Identities=22%  Similarity=0.323  Sum_probs=138.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...+|+.++|+.|+|||+|+.+|+...|. .+..|+|+....  +.+  ..+++++|||+|++.+++.+..+|+.+.+++
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            35689999999999999999999998864 466788866543  333  6789999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|||+++++||..+..|++.+.++.. ++..+++++||+|+..   .+++.++.....+.+++..++++||++++|+++.
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~-~NmvImLiGNKsDL~~---rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa  159 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSN-ENMVIMLIGNKSDLEA---RREVSKEEGEAFAREHGLIFMETSAKTAENVEEA  159 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcC-CCcEEEEEcchhhhhc---cccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence            99999999999999999999988743 6899999999999976   4455555555555678889999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |..+...+.+
T Consensus       160 F~nta~~Iy~  169 (216)
T KOG0098|consen  160 FINTAKEIYR  169 (216)
T ss_pred             HHHHHHHHHH
Confidence            9998887764

>cd04151 Arl1 Arl1 subfamily

Probab=100.00  E-value=2.3e-33  Score=186.83  Aligned_cols=157  Identities=57%  Similarity=1.010  Sum_probs=131.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      ||+++|++++|||||++++..+.+....+|.+.+...+...+..+.+|||||++.+...+..+++.+|++++|+|++++.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   80 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD   80 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence            58999999999999999998887777778888777777778899999999999999999999999999999999999988


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233           99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      ++.....++..+++.....+.|+++++||+|+.+.....++...+........+.+++++||++|.|++++|++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            88877777776665544457999999999999765555666665543333344568999999999999999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.4e-35  Score=185.98  Aligned_cols=162  Identities=22%  Similarity=0.351  Sum_probs=138.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCc-cceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPT-IGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~-~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...+||+++|.+|+|||||+.+|..+.+.+..|+ +|++.+.  +++  ...++.||||+|+++|+.+.+.+|+.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            3469999999999999999999999998776655 7766554  333  5678999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|||++.+++|.++..|+.++-..-..+++..++|+||+|..+   .+.+.+...+.++.....-|++|||++.+|++..
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            9999999999999999998886555556788899999999653   5556666666666777888999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+.+..++.+
T Consensus       166 FeelveKIi~  175 (209)
T KOG0080|consen  166 FEELVEKIIE  175 (209)
T ss_pred             HHHHHHHHhc
Confidence            9999998865

>cd04157 Arl6 Arl6 subfamily

Probab=100.00  E-value=2.5e-33  Score=187.24  Aligned_cols=158  Identities=41%  Similarity=0.761  Sum_probs=131.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--cccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD   96 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~   96 (181)
                      +|+++|++++|||||++++.+..  ...+.||.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   80 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence            58999999999999999999875  3456788888777777788999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233           97 RERISEARNELHQILSDNE--LSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus        97 ~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      +.++.....++..+++...  ..++|+++|+||+|+.+....+++...+.........+.++++||++|+|++++|++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157          81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence            9999888888887766432  24799999999999977655666666554433233456799999999999999999987


Q ss_pred             hh
Q 030233          175 NN  176 (181)
Q Consensus       175 ~~  176 (181)
                      ++
T Consensus       161 ~~  162 (162)
T cd04157         161 AQ  162 (162)
T ss_pred             cC
Confidence            53

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=3.7e-34  Score=198.72  Aligned_cols=160  Identities=18%  Similarity=0.248  Sum_probs=128.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR   97 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   97 (181)
                      +||+++|.+++|||||+++++++.+..+.+|.+.......+....+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~   80 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV   80 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999999987778888877666666778899999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---------------------CCHHHHHhhhCcc---------c
Q 030233           98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNV---------------------MPTAEVADKLELY---------S  147 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~---------------------~~~~~~~~~~~~~---------~  147 (181)
                      ++|..+..|+..+.+.. ..+.|+|+|+||+|+.+.                     .+.++........         .
T Consensus        81 ~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~  159 (220)
T cd04126          81 QSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL  159 (220)
T ss_pred             HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence            99999999988876542 357899999999998641                     1112211111000         0


Q ss_pred             cCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          148 LGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ......+|++|||++|+||+++|+.+.+.+.
T Consensus       160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            0112357999999999999999999998765

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=2e-34  Score=194.28  Aligned_cols=158  Identities=20%  Similarity=0.212  Sum_probs=126.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      .++|+++|++|+|||||++++.++.++ .+.+|.+.... .+...  ...+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            579999999999999999999998875 45677764443 33443  467899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+++++||..+..|+..+.+.....++|+++|+||+|+.+..  +.++....     +...+++|++|||++|.|++++|
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sa~~~~~v~~~f  156 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNL-----AREFNCPFFETSAALRHYIDDAF  156 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHH-----HHHhCCEEEEEecCCCCCHHHHH
Confidence            999999999999887666554333579999999999986532  22222211     12345689999999999999999


Q ss_pred             HHHHhhhhc
Q 030233          171 DWLSNNISV  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      +++.+.+.+
T Consensus       157 ~~l~~~~~~  165 (172)
T cd04141         157 HGLVREIRR  165 (172)
T ss_pred             HHHHHHHHH
Confidence            999987764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.7e-34  Score=196.68  Aligned_cols=163  Identities=21%  Similarity=0.222  Sum_probs=124.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      |+.++|+++|++++|||||+.++..+.+ ..+.||.+..+.. +..  ....+.+|||+|++.+..+++.+++++|++|+
T Consensus         1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            3568999999999999999999999887 4567887754432 223  44789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhh--------hCccccCCcc-EEEEEee
Q 030233           91 VVDSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADK--------LELYSLGQRR-WSIQSCS  159 (181)
Q Consensus        91 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~S  159 (181)
                      |||+++++||+.+.. |...+...  .++.|+++|+||+|+.+.... +.+.+.        .....+...+ ++|++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S  158 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS  158 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence            999999999999974 66555433  257999999999999653221 111110        0011112223 5899999


Q ss_pred             ccCCCCHHHHHHHHHhhhhc
Q 030233          160 AISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~  179 (181)
                      |++|+|++++|+++.+.+..
T Consensus       159 Ak~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         159 ALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999987754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=100.00  E-value=6.9e-33  Score=186.03  Aligned_cols=157  Identities=38%  Similarity=0.668  Sum_probs=136.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      +|+++|++++|||||+++++++....+.||.+.+...+...+..+.+||+||++.++..+..+++.+|++++|+|+++++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~   80 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD   80 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence            47999999999999999999875566788999888888889999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccC---CccEEEEEeeccCC------CCHHHH
Q 030233           99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLG---QRRWSIQSCSAISG------QGLYEG  169 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~l  169 (181)
                      ++.....++..++......+.|+++|+||+|+.+..+..++.+.+......   ...+.+++|||++|      .|+++.
T Consensus        81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~  160 (167)
T cd04161          81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG  160 (167)
T ss_pred             HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence            999999999998876555689999999999998877777777766544331   23568899999998      899999


Q ss_pred             HHHHHh
Q 030233          170 LDWLSN  175 (181)
Q Consensus       170 ~~~i~~  175 (181)
                      |+||..
T Consensus       161 ~~wl~~  166 (167)
T cd04161         161 LRWLLA  166 (167)
T ss_pred             HHHHhc
Confidence            999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=100.00  E-value=9.9e-33  Score=189.02  Aligned_cols=164  Identities=37%  Similarity=0.659  Sum_probs=140.8

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      ..+..+|+++|++|+|||||++++.++.+..+.+|.+.+...+.+.+..+.+||+||++.+...+..+++.+|++++|+|
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D   95 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD   95 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence            45689999999999999999999999887777788887777788888999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-----------CCccEEEEEeeccC
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-----------GQRRWSIQSCSAIS  162 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~  162 (181)
                      +++++++.....++..+++.....+.|+++++||+|+......+++.........           ....+.+++|||++
T Consensus        96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  175 (190)
T cd00879          96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK  175 (190)
T ss_pred             CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence            9999999988889988877655567999999999999876677777776654221           12456799999999


Q ss_pred             CCCHHHHHHHHHhhh
Q 030233          163 GQGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (181)
                      |+|++++|++|.+.+
T Consensus       176 ~~gv~e~~~~l~~~~  190 (190)
T cd00879         176 RQGYGEAFRWLSQYL  190 (190)
T ss_pred             CCChHHHHHHHHhhC
Confidence            999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=100.00  E-value=7.5e-33  Score=184.34  Aligned_cols=157  Identities=64%  Similarity=1.114  Sum_probs=139.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      ||+++|++|||||||++++++.......++.+.+...+.+....+.+||+||++.+...+..+++.+|++++|+|+++++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~   80 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE   80 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            68999999999999999999998777888999888888888999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233           99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      ++.....++..+.......+.|+++++||+|+......+++...+.........++++++||++|.|++++|++|..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878          81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            99999999988877655578999999999999877667777776655434556779999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04155 Arl3 Arl3 subfamily

Probab=100.00  E-value=1.4e-32  Score=185.54  Aligned_cols=171  Identities=44%  Similarity=0.779  Sum_probs=144.2

Q ss_pred             HHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCC
Q 030233            6 SRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDT   85 (181)
Q Consensus         6 ~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   85 (181)
                      +-+.+...+.+.++|+++|++|+|||||++++.+..+....++.+++...+...+..+.+||+||+..+...+..+++.+
T Consensus         3 ~~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~   82 (173)
T cd04155           3 SLLRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENT   82 (173)
T ss_pred             hHHHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCC
Confidence            33444445566899999999999999999999998877778888888888888889999999999999888899999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      |++++|+|+++..++.....++..++......++|+++++||+|+.+....+++.+.+.........++++++||++|+|
T Consensus        83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g  162 (173)
T cd04155          83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEG  162 (173)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence            99999999999888888888887776654445799999999999987666777777766554455566789999999999


Q ss_pred             HHHHHHHHHhh
Q 030233          166 LYEGLDWLSNN  176 (181)
Q Consensus       166 i~~l~~~i~~~  176 (181)
                      ++++|+||+++
T Consensus       163 i~~~~~~l~~~  173 (173)
T cd04155         163 LQEGMNWVCKN  173 (173)
T ss_pred             HHHHHHHHhcC
Confidence            99999999763

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=5.3e-34  Score=193.31  Aligned_cols=164  Identities=18%  Similarity=0.199  Sum_probs=125.8

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      +...+||+++|++++|||||+++++.+.+. .+.||.+.... .+..  ....+.+|||+|++.+..+++.+++++|+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            345789999999999999999999998864 46777765443 2333  3468999999999999999999999999999


Q ss_pred             EEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhhCccccCCcc-EEEEEe
Q 030233           90 FVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMP---------TAEVADKLELYSLGQRR-WSIQSC  158 (181)
Q Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~  158 (181)
                      +|||+++++||+.+ ..|+..+....  ++.|+++|+||+|+.+...         ...+........+...+ .+|++|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            99999999999997 67877775542  5799999999999854210         00111111111223344 489999


Q ss_pred             eccCCCC-HHHHHHHHHhhhhc
Q 030233          159 SAISGQG-LYEGLDWLSNNISV  179 (181)
Q Consensus       159 Sa~~~~~-i~~l~~~i~~~~~~  179 (181)
                      ||++|+| |+++|+.+.+.+.+
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         160 SALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhc
Confidence            9999998 99999999886554

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=187.80  Aligned_cols=164  Identities=16%  Similarity=0.256  Sum_probs=131.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .-+||.++|++|+|||||+|++.+.++ ..+..|+|....+  +.+  ....++||||+|+++|+++.-.+++++|++++
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl   87 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL   87 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence            458999999999999999999999986 4567888865444  333  44689999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCC---CCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNE---LSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      |||+++++||..+..|..+++.+..   +...|.|++|||+|+....+...-.+....-.....+++|||+||+...|++
T Consensus        88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~  167 (210)
T KOG0394|consen   88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD  167 (210)
T ss_pred             EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence            9999999999999999999987643   3457999999999986633211111111111124568899999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      +.|+.+.+.+..
T Consensus       168 ~AFe~ia~~aL~  179 (210)
T KOG0394|consen  168 EAFEEIARRALA  179 (210)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887654

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=100.00  E-value=8.4e-33  Score=184.43  Aligned_cols=157  Identities=45%  Similarity=0.868  Sum_probs=132.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR   97 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   97 (181)
                      +|+++|++|+|||||++++.++.+....||.+.+...+.. ....+.+||+||++.+...+..++..+|++++|+|++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~   80 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE   80 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence            5899999999999999999999887778888877666655 457899999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233           98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      .++.....++..+++.....+.|+++|+||+|+......+++...+..... ...++++++|||++|+|++++|++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            999999998888876644468999999999999765566777665543222 235678999999999999999999865

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=1.2e-32  Score=187.44  Aligned_cols=164  Identities=48%  Similarity=0.783  Sum_probs=133.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +.++|+++|++|||||||+++++.+.+....||.+++......     ....+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988877667777766554443     45789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      |+|+++++++.....++..+.......+.|+++|+||+|+.+....+++......... ....++++++||++|+|++++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence            9999999899888888877766544457999999999999765555665554443222 223467899999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      +++|.+.+.+
T Consensus       162 ~~~l~~~l~~  171 (183)
T cd04152         162 LEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHH
Confidence            9999988743

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2.9e-33  Score=187.76  Aligned_cols=157  Identities=22%  Similarity=0.339  Sum_probs=125.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++|+|||||+++++++.+.. +.+|.+.+..  .+...  ...+.+|||||++.+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            4799999999999999999999888644 4556665543  23343  46789999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||++++++|+.+..|+..+.... .++.|+++|+||+|+....  ..++.....     ...+++++++||++|+|++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~e~  155 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFA-----DENGLLFLECSAKTGENVEDA  155 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence            99999999999999998875542 2578999999999986532  233333322     223568999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |.++++.+.+
T Consensus       156 f~~l~~~~~~  165 (166)
T cd04122         156 FLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=5.6e-33  Score=187.27  Aligned_cols=155  Identities=20%  Similarity=0.213  Sum_probs=124.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      +|++++|++++|||||+.+++.+.+. .+.||.+.... .+..  ....+.+|||+|++++..++..++++++++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            58999999999999999999999875 56788875443 2333  44789999999999999999999999999999999


Q ss_pred             CCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC------------CHHHHHhhhCccccCCccE-EEEEee
Q 030233           94 SSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVM------------PTAEVADKLELYSLGQRRW-SIQSCS  159 (181)
Q Consensus        94 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S  159 (181)
                      +++++||+.+ ..|+..+....  ++.|+++|+||+|+.+..            ..++....     +...+. .|+|||
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~-----a~~~~~~~~~E~S  154 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEEL-----RKQIGAAAYIECS  154 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHH-----HHHcCCCEEEECC
Confidence            9999999998 57888775443  479999999999995431            22222221     122333 699999


Q ss_pred             ccCCCCHHHHHHHHHhhhhc
Q 030233          160 AISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~  179 (181)
                      |++|.||+++|+.+.+.+.+
T Consensus       155 Ak~~~nV~~~F~~~~~~~~~  174 (176)
T cd04133         155 SKTQQNVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CCcccCHHHHHHHHHHHHhc
Confidence            99999999999999987654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.6e-33  Score=189.66  Aligned_cols=160  Identities=23%  Similarity=0.404  Sum_probs=127.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE------------CCeEEEEEEcCCChhhHHHHHh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY------------KNKSFCVWDVGGQNKIRALWRH   80 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~------------~~~~~~i~d~~g~~~~~~~~~~   80 (181)
                      +.+||+++|++|||||||++++.++.+. .+.+|.+.+...  +.+            ....+.+||+||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            4689999999999999999999988754 456666654432  222            2378999999999999999999


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEe
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSC  158 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      +++++|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.  .+.++.....     ...+.+++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~  157 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA-----DKYGIPYFET  157 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH-----HHcCCeEEEE
Confidence            99999999999999999999999999988866544457899999999998653  2223332222     2234579999


Q ss_pred             eccCCCCHHHHHHHHHhhhhcc
Q 030233          159 SAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ||++|.|++++|+++.+.+.++
T Consensus       158 Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         158 SAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999877653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-34  Score=177.81  Aligned_cols=158  Identities=22%  Similarity=0.373  Sum_probs=131.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+|++++|++.+|||||+.++++.++. ....|.|+..+...+    ..+++++|||+|++.++.+...++++++++|++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            469999999999999999999999964 467788877665443    558999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||++|.+||..+..|...+- .....+.|+|+|+||||+..+  .+.+....     .+...+..|||+||+.|.|++.+
T Consensus       101 yDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~-----l~~~LGfefFEtSaK~NinVk~~  174 (193)
T KOG0093|consen  101 YDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQ-----LADQLGFEFFETSAKENINVKQV  174 (193)
T ss_pred             EecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHH-----HHHHhChHHhhhcccccccHHHH
Confidence            99999999999999998874 445578999999999998763  22232222     22334557999999999999999


Q ss_pred             HHHHHhhhhcc
Q 030233          170 LDWLSNNISVK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |+.+...+.++
T Consensus       175 Fe~lv~~Ic~k  185 (193)
T KOG0093|consen  175 FERLVDIICDK  185 (193)
T ss_pred             HHHHHHHHHHH
Confidence            99998887654

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=100.00  E-value=2.2e-32  Score=183.05  Aligned_cols=155  Identities=37%  Similarity=0.626  Sum_probs=131.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR   97 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   97 (181)
                      .|+++|++|+|||||+++++++.+ ..+.||.+.....+...+..+.+||+||++.++..+..+++.+|++++|+|.+++
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~   80 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS   80 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence            379999999999999999998864 4567888887766777889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccC------CCCHHHHH
Q 030233           98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAIS------GQGLYEGL  170 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~l~  170 (181)
                      .++.....|+..+....  +++|+++|+||+|+......+++......... ...++.++++||++      ++|++++|
T Consensus        81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~  158 (164)
T cd04162          81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL  158 (164)
T ss_pred             HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence            99999999888886543  58999999999999876666666655543333 45678899999888      99999999


Q ss_pred             HHHHh
Q 030233          171 DWLSN  175 (181)
Q Consensus       171 ~~i~~  175 (181)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T cd04162         159 SQLIN  163 (164)
T ss_pred             HHHhc
Confidence            98864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-32  Score=169.35  Aligned_cols=179  Identities=59%  Similarity=1.025  Sum_probs=170.8

Q ss_pred             CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233            1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~   80 (181)
                      ||..++++..+.+-.++++|+++|-.++||||++..++-+......||.|++...+.+.+..+.+||++|+...+..|..
T Consensus         1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh   80 (180)
T KOG0071|consen    1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH   80 (180)
T ss_pred             CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence            78888888888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      ++....++|+|+|..+.+.+++.+..+..+++++...+.|+++.+||-|++...+++++.+.+++..+..+.+.+.++||
T Consensus        81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a  160 (180)
T KOG0071|consen   81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA  160 (180)
T ss_pred             hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence            99999999999999999999999999999999988889999999999999999999999999999888889999999999


Q ss_pred             cCCCCHHHHHHHHHhhhhc
Q 030233          161 ISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (181)
                      .+|.|+.+-|.|+.+.+..
T Consensus       161 ~~gdgL~eglswlsnn~~~  179 (180)
T KOG0071|consen  161 LSGDGLKEGLSWLSNNLKE  179 (180)
T ss_pred             ccchhHHHHHHHHHhhccC
Confidence            9999999999999988764

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.7e-32  Score=184.00  Aligned_cols=155  Identities=23%  Similarity=0.348  Sum_probs=126.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++|||||||+++++.+.+ ..+.+|.+.......+    ....+.+|||+|++.+...+..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999998775 4567777766655443    4578999999999998888889999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      |++++++++.+..|+..+....  .+.|+++|+||+|+.+......... .    ......+++++||++|+|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~~  153 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-F----HRKKNLQYYEISAKSNYNFEKPFLW  153 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-H----HHHcCCEEEEEeCCCCCChHHHHHH
Confidence            9999999999999988886653  3899999999999864332222211 1    1234567999999999999999999


Q ss_pred             HHhhhhc
Q 030233          173 LSNNISV  179 (181)
Q Consensus       173 i~~~~~~  179 (181)
                      |.+.+.+
T Consensus       154 l~~~~~~  160 (166)
T cd00877         154 LARKLLG  160 (166)
T ss_pred             HHHHHHh
Confidence            9988865

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.4e-32  Score=186.72  Aligned_cols=159  Identities=18%  Similarity=0.294  Sum_probs=124.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++|+|||||+++++++.+.. +.||.+.+..  .+...  ...+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            589999999999999999999988654 7788886653  34444  368999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP---TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      |++++++++.+..|+..+.+... ...| ++|+||+|+.+...   .+.+.+ .....+...+++++++||++|+|++++
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~e~SAk~g~~v~~l  157 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITK-QARKYAKAMKAPLIFCSTSHSINVQKI  157 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999988866422 3566 68899999864221   111111 111111233468999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+++.+.+.+
T Consensus       158 f~~l~~~l~~  167 (182)
T cd04128         158 FKIVLAKAFD  167 (182)
T ss_pred             HHHHHHHHHh
Confidence            9999987754

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=3.7e-33  Score=188.84  Aligned_cols=160  Identities=20%  Similarity=0.198  Sum_probs=121.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++||+++|++|+|||||+++++++.++ .+.||.+.... .+..  ....+.+|||+|++.+..+.+.+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            478999999999999999999998865 45677765433 2333  4467899999999999999999999999999999


Q ss_pred             ECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhhCccccCCccE-EEEEeecc
Q 030233           93 DSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMP---------TAEVADKLELYSLGQRRW-SIQSCSAI  161 (181)
Q Consensus        93 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  161 (181)
                      |+++++||+.+ ..|+..+.+..  ++.|+++|+||+|+.+...         ...+........+...+. .|++|||+
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            99999999996 67877775542  5799999999999854210         000111111111233443 79999999


Q ss_pred             CCCC-HHHHHHHHHhhhh
Q 030233          162 SGQG-LYEGLDWLSNNIS  178 (181)
Q Consensus       162 ~~~~-i~~l~~~i~~~~~  178 (181)
                      +|+| ++++|..+.+...
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999988654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.4e-32  Score=187.30  Aligned_cols=158  Identities=23%  Similarity=0.314  Sum_probs=126.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC---CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK---NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +||+++|++|+|||||+++++++.+. .+.+|.+.+..  .+...   ...+.+|||||++.+..++..+++.++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            58999999999999999999998754 45677775543  34443   56789999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCC--CCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           92 VDSSDRERISEARNELHQILSD---NELSNAALLVFANKQDLP--NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ||++++++|+.+..|+..+...   ....++|+++|+||+|+.  +....+++.......    ....++++||++|+|+
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v  156 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI  156 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence            9999999999999888776542   123578999999999996  334444444433211    1247999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 030233          167 YEGLDWLSNNISV  179 (181)
Q Consensus       167 ~~l~~~i~~~~~~  179 (181)
                      +++|+++.+.+.+
T Consensus       157 ~e~f~~l~~~l~~  169 (201)
T cd04107         157 EEAMRFLVKNILA  169 (201)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=4.7e-33  Score=190.37  Aligned_cols=160  Identities=21%  Similarity=0.225  Sum_probs=127.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +..++|+++|++|+|||||+++++++.+. .+.+|.+.... .+..  ....+.+|||||++++..++..+++.+|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            45799999999999999999999988764 55677665443 2233  34578899999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+..  ...+.....     ...+++++++||++|.|+++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~Sak~~~gi~~  157 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA-----KSFGIPFLETSAKQRVNVDE  157 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHhCCEEEEeeCCCCCCHHH
Confidence            99999999999999999888765444689999999999986532  222222211     12235799999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|+++.+.+.+
T Consensus       158 ~~~~l~~~l~~  168 (189)
T PTZ00369        158 AFYELVREIRK  168 (189)
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=6.1e-33  Score=187.51  Aligned_cols=158  Identities=19%  Similarity=0.198  Sum_probs=120.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      +||+++|++|+|||||+++++++.+ ..+.||.+.... .+...+  ..+.+|||+|++++...+..+++.+|++++|||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d   81 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS   81 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence            6899999999999999999999887 467788775544 344444  678899999999999999999999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-H--------HhhhCccccCC-ccEEEEEeeccC
Q 030233           94 SSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPTAE-V--------ADKLELYSLGQ-RRWSIQSCSAIS  162 (181)
Q Consensus        94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~--------~~~~~~~~~~~-~~~~~~~~Sa~~  162 (181)
                      ++++++|+.+.. |+..+... . ++.|+++|+||+|+.+.....+ +        ........+.. ..+.|++|||++
T Consensus        82 ~~~~~s~~~~~~~w~~~i~~~-~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          82 VVSPSSFENVKEKWVPEITHH-C-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999975 66655443 2 5799999999999865321110 0        00000001111 236899999999


Q ss_pred             CCCHHHHHHHHHhhh
Q 030233          163 GQGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (181)
                      |+|++++|+.+++.+
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.6e-32  Score=190.35  Aligned_cols=157  Identities=22%  Similarity=0.315  Sum_probs=129.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      +..+||+++|++|||||||+++++.+.+. .+.+|.+.+.....+    ....+.+|||+|++.+..++..+++.++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56789999999999999999999888764 567888876655433    4479999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +|||+++++++..+..|+..+.+..  .+.|+++|+||+|+.+.. ..+++ ..     ....++.|++|||++|.|+++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~-----~~~~~~~~~e~SAk~~~~i~~  162 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF-----HRKKNLQYYEISAKSNYNFEK  162 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HH-----HHhcCCEEEEcCCCCCCCHHH
Confidence            9999999999999999998886542  579999999999986432 22222 11     123456899999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|++|.+.+.+
T Consensus       163 ~f~~l~~~~~~  173 (219)
T PLN03071        163 PFLYLARKLAG  173 (219)
T ss_pred             HHHHHHHHHHc
Confidence            99999988754

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=100.00  E-value=8.5e-32  Score=180.77  Aligned_cols=157  Identities=36%  Similarity=0.733  Sum_probs=131.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC-------cccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE-------IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +|+++|++|+|||||++++.+..       ...+.+|.+.+...+.+.+..+.+|||||++.+...+..++..+|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            58999999999999999997643       22446777777777888899999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc--cCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS--LGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|+++++++.....++..+++.....+.|+++++||+|+.+....+++...+....  .....++++++||++|+|++++
T Consensus        81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  160 (167)
T cd04160          81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence            99999889999888888887765556899999999999987666666655544322  2335678999999999999999


Q ss_pred             HHHHHh
Q 030233          170 LDWLSN  175 (181)
Q Consensus       170 ~~~i~~  175 (181)
                      +++|.+
T Consensus       161 ~~~l~~  166 (167)
T cd04160         161 IEWLVE  166 (167)
T ss_pred             HHHHhc
Confidence            999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=9.4e-33  Score=192.74  Aligned_cols=162  Identities=21%  Similarity=0.213  Sum_probs=124.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ..++|+++|++|||||||+++++++.+. .+.||.+..+.. +..  ....+.+|||+|++.|..+++.+++++|++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            4689999999999999999999998865 456777655432 233  457899999999999999999999999999999


Q ss_pred             EECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhhCccccCCccE-EEEEeec
Q 030233           92 VDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMP---------TAEVADKLELYSLGQRRW-SIQSCSA  160 (181)
Q Consensus        92 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (181)
                      ||++++++|+.+ ..|+..+....  ++.|+++|+||+|+.....         ...+........+...++ .|++|||
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            999999999985 67887776542  4789999999999854210         011111111112233444 6999999


Q ss_pred             cCCC-CHHHHHHHHHhhhhc
Q 030233          161 ISGQ-GLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~~~-~i~~l~~~i~~~~~~  179 (181)
                      ++|+ |++++|+.++..+.+
T Consensus       170 ktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHH
Confidence            9998 899999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=9.7e-33  Score=184.88  Aligned_cols=157  Identities=20%  Similarity=0.276  Sum_probs=124.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++||+++|.+|+|||||+++++.+.+. .+.+|.+.... .+...  ...+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            478999999999999999999987754 35566654332 34443  457789999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |++++++++....|+..+.......+.|+++++||+|+.+...  .++... +.    ...+++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~~  155 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LA----RQWGCAFLETSAKAKINVNEIF  155 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH-HH----HHhCCEEEEeeCCCCCCHHHHH
Confidence            9999999999999998887655556899999999999965322  222211 11    1233579999999999999999


Q ss_pred             HHHHhhhh
Q 030233          171 DWLSNNIS  178 (181)
Q Consensus       171 ~~i~~~~~  178 (181)
                      +++.+++.
T Consensus       156 ~~l~~~l~  163 (164)
T cd04175         156 YDLVRQIN  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3e-32  Score=183.38  Aligned_cols=157  Identities=25%  Similarity=0.335  Sum_probs=124.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      ||+++|++|||||||+++++++.+. .+.||.+.....  +...  ...+.+|||||++++...+..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            7999999999999999999998864 567887765542  3333  4679999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT---AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      +++++++.....|+..+++.......|+++|+||+|+.+....   ++......    ...+.+++++||++|.|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AEMQAEYWSVSALSGENVREFF  157 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999999988876544446789999999998543221   11111111    1223479999999999999999


Q ss_pred             HHHHhhhhc
Q 030233          171 DWLSNNISV  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      +.+.+.+.+
T Consensus       158 ~~l~~~~~~  166 (170)
T cd04108         158 FRVAALTFE  166 (170)
T ss_pred             HHHHHHHHH
Confidence            999887653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1e-31  Score=180.33  Aligned_cols=156  Identities=25%  Similarity=0.378  Sum_probs=124.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++|+|||||+++++++.+. .+.++.+.+..  .+..  ....+.+|||||++.+...+..+++.+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999998854 45677765543  3333  4578899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCC----CCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           93 DSSDRERISEARNELHQILSDNE----LSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~----~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      |++++++++....|+..+.....    ..+.|+++|+||+|+.+.  .+.++.....     ...+.+++++||++|+|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi  155 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV  155 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence            99999999999999888866433    256999999999998632  2333332222     123357999999999999


Q ss_pred             HHHHHHHHhhhh
Q 030233          167 YEGLDWLSNNIS  178 (181)
Q Consensus       167 ~~l~~~i~~~~~  178 (181)
                      +++|++|.+.+.
T Consensus       156 ~~l~~~l~~~l~  167 (168)
T cd04119         156 NEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.3e-32  Score=183.63  Aligned_cols=159  Identities=22%  Similarity=0.368  Sum_probs=127.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ..+||+++|++|+|||||++++.++.+. .+.++.+....  .+...  ...+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999998854 45677765543  33343  3578999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||++++++|+.+..|+..+... ...+.|+++|+||+|+.+..  ..++.....     ...+.+++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~  155 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE  155 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999988887654 23579999999999997532  233333222     22345799999999999999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|+++.+.+.++
T Consensus       156 ~~~~i~~~~~~~  167 (167)
T cd01867         156 AFFTLAKDIKKK  167 (167)
T ss_pred             HHHHHHHHHHhC
Confidence            999999987653

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=2.3e-32  Score=183.27  Aligned_cols=156  Identities=22%  Similarity=0.363  Sum_probs=124.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++|+|||||++++.++.+. .+.+|.+.+...  +..  ....+.+||+||++++...+..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            68999999999999999999998864 456777654433  322  3468999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |++++++++.+..|+..+.... ....|+++|+||+|+.+...  .++.....     ...+++++++||++|.|++++|
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~  155 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF  155 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence            9999999999999988875442 34789999999999865322  22222221     1233479999999999999999


Q ss_pred             HHHHhhhhc
Q 030233          171 DWLSNNISV  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      +++.+.+.+
T Consensus       156 ~~l~~~~~~  164 (165)
T cd01865         156 ERLVDIICD  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999987754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.4e-32  Score=182.43  Aligned_cols=154  Identities=21%  Similarity=0.346  Sum_probs=122.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++|+++|++|+|||||++++.++.+. .+.+|.+.+..  .+...  ...+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999998864 45777776544  34444  367899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      |++++++|+.+..|+..+.... ..+.|+++|+||+|+...... .+....+.    +..+.+|++|||++|.|++++|+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~  155 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFT  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999988876542 247999999999998653321 11222221    22335799999999999999999


Q ss_pred             HHHhh
Q 030233          172 WLSNN  176 (181)
Q Consensus       172 ~i~~~  176 (181)
                      +|.+.
T Consensus       156 ~l~~~  160 (161)
T cd04117         156 RLTEL  160 (161)
T ss_pred             HHHhh
Confidence            99865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.3e-32  Score=183.99  Aligned_cols=156  Identities=21%  Similarity=0.259  Sum_probs=122.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCcccee-EEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFN-VEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      .++|+++|++|+|||||+++++++.+. .+.+|.+.. ...+...+  ..+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            379999999999999999999988754 345565522 23344443  56789999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |++++++++....|+..+.......+.|+++|+||+|+.+...  .++.....     ...+.+++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~  155 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA-----RQWGCPFYETSAKSKINVDEVF  155 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHH
Confidence            9999999999999988887654446899999999999865322  22221111     1223589999999999999999


Q ss_pred             HHHHhhh
Q 030233          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      +++.+.+
T Consensus       156 ~~l~~~~  162 (163)
T cd04136         156 ADLVRQI  162 (163)
T ss_pred             HHHHHhc
Confidence            9998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=2.5e-32  Score=189.44  Aligned_cols=158  Identities=22%  Similarity=0.428  Sum_probs=126.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ++||+++|++|+|||||+++++++.+.. +.+|.+.+...  +..   ....+.+|||+|++.+...+..+++.+|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            5899999999999999999999988644 45676655433  333   24689999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||++++++|+.+..|+..+........+|+++|+||+|+.+..  ..++.....     ...+++++++||++|+|+++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~e  156 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA-----KDLGMKYIETSARTGDNVEE  156 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHH
Confidence            99999999999999999988765444568899999999986532  222222221     22346899999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|++|.+.+.+
T Consensus       157 ~f~~l~~~~~~  167 (211)
T cd04111         157 AFELLTQEIYE  167 (211)
T ss_pred             HHHHHHHHHHH
Confidence            99999987764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=8.4e-32  Score=179.76  Aligned_cols=156  Identities=22%  Similarity=0.265  Sum_probs=122.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++||+++|++|+|||||+++++++.+. .+.+|.+.... .+...+  ..+.+|||||++.+..++..+++.++++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            368999999999999999999988753 45566554332 233333  56889999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      |+++++++.....|+..+.+.....+.|+++|+||+|+.+.. ...+.....     ...+.+++++||++|.|++++|+
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~  155 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY  155 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence            999999999998888888765444689999999999986532 222222221     12344799999999999999999


Q ss_pred             HHHhhh
Q 030233          172 WLSNNI  177 (181)
Q Consensus       172 ~i~~~~  177 (181)
                      ++.+.+
T Consensus       156 ~l~~~~  161 (162)
T cd04138         156 TLVREI  161 (162)
T ss_pred             HHHHHh
Confidence            998765

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.6e-32  Score=187.95  Aligned_cols=157  Identities=21%  Similarity=0.233  Sum_probs=122.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      +|+++|.+|+|||||+++++.+.+.. +.+|.+.... .+...+  ..+.+|||||++.+..++..+++.+|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            58999999999999999999887644 5566654332 233333  5689999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           95 SDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      +++++++.+..|+..+.....  ..+.|+++|+||+|+.....  ..+....     ....+++++++||++|.|++++|
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~SAk~~~~v~~l~  155 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAAL-----ARRLGCEFIEASAKTNVNVERAF  155 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHH-----HHHhCCEEEEecCCCCCCHHHHH
Confidence            999999999999888765432  25789999999999864222  2222111     12234579999999999999999


Q ss_pred             HHHHhhhhcc
Q 030233          171 DWLSNNISVK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      +++.+.+.++
T Consensus       156 ~~l~~~l~~~  165 (190)
T cd04144         156 YTLVRALRQQ  165 (190)
T ss_pred             HHHHHHHHHh
Confidence            9999887643

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=5e-32  Score=181.77  Aligned_cols=157  Identities=22%  Similarity=0.360  Sum_probs=124.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++|+|||||+++++++.+. .+.+|.+.+..  .+...  ...+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            479999999999999999999988754 44566664433  33333  45789999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||+++++++..+..|+..+.... .++.|+++++||+|+.....  .++.....     ...+++++++||++|+|++++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~  155 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFA-----DELGIPFLETSAKNATNVEQA  155 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCcCHHHH
Confidence            99999999999999988875542 25789999999999865322  23222222     223458999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+++.+.+.+
T Consensus       156 ~~~i~~~~~~  165 (166)
T cd01869         156 FMTMAREIKK  165 (166)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-32  Score=182.76  Aligned_cols=160  Identities=21%  Similarity=0.356  Sum_probs=133.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEE--E--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVE--Y--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~--~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +-+||+++|++++|||=|+.|+..+.| .+..+|+|+...+..  +  ..++.+||||+|+++|++....+|+.+.+.++
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll   92 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   92 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence            468999999999999999999999996 556788887766533  3  56789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |||+++..+|+.+..|+.+++.+.+ +++++++|+||+||..   .+.+........+...+..++++||.++.|+++.|
T Consensus        93 VYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~---lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen   93 VYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNH---LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             EEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhh---ccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence            9999999999999999999988765 6899999999999965   22222222222234456689999999999999999


Q ss_pred             HHHHhhhhc
Q 030233          171 DWLSNNISV  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      +.+...+.+
T Consensus       169 ~~~l~~I~~  177 (222)
T KOG0087|consen  169 ERVLTEIYK  177 (222)
T ss_pred             HHHHHHHHH
Confidence            988877654

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.7e-32  Score=188.07  Aligned_cols=157  Identities=18%  Similarity=0.228  Sum_probs=124.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC---CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK---NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +||+++|++|+|||||+++++++.+. .+.+|.+.+..  .+...   ...+.+|||+|++.+...+..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999988864 45677775543  34442   47899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           92 VDSSDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      ||++++++|+.+..|+..+.+...  ..++|+++|+||+|+.+..  ..++.....     ...+++++++||++|+|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~-----~~~~~~~~~iSAktg~gv~  155 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA-----QANGMESCLVSAKTGDRVN  155 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHH
Confidence            999999999999988888765432  2457899999999986422  222222211     1233579999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|+++.+.+..
T Consensus       156 ~lf~~l~~~l~~  167 (215)
T cd04109         156 LLFQQLAAELLG  167 (215)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=4e-32  Score=181.86  Aligned_cols=157  Identities=24%  Similarity=0.295  Sum_probs=123.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE-EEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV-EAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      +||+++|++|+|||||+++++++.+.. +.++.+... .....  ....+.+|||||++++...+..+++.+|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999999887543 344444222 22333  34678899999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ++++++++....|+..+.+.....+.|+++|+||+|+....  ..+......     ...+.+++++||++|.|++++|+
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~  155 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence            99999999999988887665444578999999999986532  222222222     12235899999999999999999


Q ss_pred             HHHhhhhc
Q 030233          172 WLSNNISV  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      ++.+.+.+
T Consensus       156 ~l~~~~~~  163 (164)
T smart00173      156 DLVREIRK  163 (164)
T ss_pred             HHHHHHhh
Confidence            99988764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.6e-31  Score=185.74  Aligned_cols=162  Identities=19%  Similarity=0.209  Sum_probs=121.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++||+++|++|+|||||++++.++.++ .+.||.+..+. .+.+  ....+.+|||+|++.|..+++.+++.+|++++||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            378999999999999999999998865 46788775543 2333  4567899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HH--------HHhhhCccccCCcc-EEEEEeeccC
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AE--------VADKLELYSLGQRR-WSIQSCSAIS  162 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (181)
                      |++++++|+.+..+|...+... .++.|+++|+||+|+...... ..        +........+...+ ..|+||||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            9999999999965554433332 267999999999998653110 00        11111111112233 4899999999


Q ss_pred             CCC-HHHHHHHHHhhhhc
Q 030233          163 GQG-LYEGLDWLSNNISV  179 (181)
Q Consensus       163 ~~~-i~~l~~~i~~~~~~  179 (181)
                      +++ |+++|+.+......
T Consensus       160 ~~~~V~~~F~~~~~~~~~  177 (222)
T cd04173         160 SERSVRDVFHVATVASLG  177 (222)
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            985 99999998886544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=3.2e-32  Score=182.19  Aligned_cols=157  Identities=17%  Similarity=0.269  Sum_probs=122.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccc-eeEEEEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIG-FNVEAVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +++|+++|++|+|||||+++++.+.+.. +.+|.+ .....+...  ...+.+|||||++.+..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            4799999999999999999999988644 445544 222233333  356889999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-VADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      |++++++++.+..|+..+.+.....+.|+++|+||+|+.+...... ....+.    ...+.+++++||++|.|++++|+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~  156 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA  156 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence            9999999999999988887654446899999999999854322111 111111    11235799999999999999999


Q ss_pred             HHHhhh
Q 030233          172 WLSNNI  177 (181)
Q Consensus       172 ~i~~~~  177 (181)
                      ++.+.+
T Consensus       157 ~l~~~l  162 (163)
T cd04176         157 EIVRQM  162 (163)
T ss_pred             HHHHhc
Confidence            998765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=4e-32  Score=181.81  Aligned_cols=156  Identities=22%  Similarity=0.254  Sum_probs=122.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      .+||+++|++|+|||||+++++++.+. .+.++.+.... .....  ...+.+|||||++++...+..+++.+|++++|+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            579999999999999999999988753 34455543222 23333  357889999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |++++++++....|+..+.+.....+.|+++++||+|+....  ..++.....     ...+.+++++||++|.|++++|
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~  156 (164)
T cd04145          82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA-----RKLKIPYIETSAKDRLNVDKAF  156 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH-----HHcCCcEEEeeCCCCCCHHHHH
Confidence            999999999999999888765444679999999999986532  222222211     1234579999999999999999


Q ss_pred             HHHHhhh
Q 030233          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      +++.+.+
T Consensus       157 ~~l~~~~  163 (164)
T cd04145         157 HDLVRVI  163 (164)
T ss_pred             HHHHHhh
Confidence            9998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.1e-31  Score=183.61  Aligned_cols=157  Identities=24%  Similarity=0.324  Sum_probs=125.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++|+++|++|+|||||++++.++.+.. +.+|.+.+..  .+..  ....+.+||+||.+.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            589999999999999999999988765 6777775543  3333  3467899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+++++++..+..|+..+.... ....|+++++||+|+.+..  +.+......     ...+++++++||++|.|++++|
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~~~~i~~~f  154 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC-----DSLNIPFFETSAKQSINVEEAF  154 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999988876542 2468999999999987432  222222211     1234479999999999999999


Q ss_pred             HHHHhhhhcc
Q 030233          171 DWLSNNISVK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      +++.+.+.++
T Consensus       155 ~~l~~~~~~~  164 (188)
T cd04125         155 ILLVKLIIKR  164 (188)
T ss_pred             HHHHHHHHHH
Confidence            9999887653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=6.5e-32  Score=181.07  Aligned_cols=154  Identities=16%  Similarity=0.207  Sum_probs=119.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      ++|+++|++|+|||||+++++++.+. .+.++.+..... +..  ....+.+|||||++.+...+..+++.++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            68999999999999999999998864 445666544332 222  44678999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           94 SSDRERISEARNELHQILSDN--ELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +++++++..+..|+..+.+..  ..++.|+++|+||+|+.+...  .++... .    ....+..+++|||++|+|++++
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~SA~~g~~v~~~  156 (165)
T cd04140          82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAA-C----ATEWNCAFMETSAKTNHNVQEL  156 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHH-H----HHHhCCcEEEeecCCCCCHHHH
Confidence            999999999998887664432  235799999999999865222  222111 1    1223457999999999999999


Q ss_pred             HHHHHhh
Q 030233          170 LDWLSNN  176 (181)
Q Consensus       170 ~~~i~~~  176 (181)
                      |++|.+.
T Consensus       157 f~~l~~~  163 (165)
T cd04140         157 FQELLNL  163 (165)
T ss_pred             HHHHHhc
Confidence            9999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=9.1e-33  Score=173.21  Aligned_cols=157  Identities=21%  Similarity=0.332  Sum_probs=128.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++.+++|++|+|||+|+.+|....|.. +..|+|++...  +.+  ...+++||||+|++.|+.+...+++..+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            567899999999999999999888654 55677765544  444  5688999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      |+++.+||.+...|++++.+.-  +..|-++|+||+|.+..   ..+....+...+...++.+|++||++++|++.+|..
T Consensus        89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~R---rvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c  163 (198)
T KOG0079|consen   89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPER---RVVDTEDARAFALQMGIELFETSAKENENVEAMFHC  163 (198)
T ss_pred             ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccc---eeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence            9999999999999999986543  47999999999998652   222222223333567778999999999999999999


Q ss_pred             HHhhhhc
Q 030233          173 LSNNISV  179 (181)
Q Consensus       173 i~~~~~~  179 (181)
                      |.+.+.+
T Consensus       164 it~qvl~  170 (198)
T KOG0079|consen  164 ITKQVLQ  170 (198)
T ss_pred             HHHHHHH
Confidence            9887643

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.1e-31  Score=182.84  Aligned_cols=149  Identities=21%  Similarity=0.315  Sum_probs=122.5

Q ss_pred             EcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233           23 VGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR   97 (181)
Q Consensus        23 ~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   97 (181)
                      +|+++||||||+++++.+.+. .+.+|.+.+.....+    ....+.+|||+|++++..++..+++.++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            699999999999999988875 467888876654433    357899999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233           98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      .+++.+..|+..+.+..  +++|+++|+||+|+.... ..+.. .     .....++.|++|||++|+||+++|+++.+.
T Consensus        81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-----FHRKKNLQYYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999988886642  579999999999985422 22221 1     113345689999999999999999999988


Q ss_pred             hhc
Q 030233          177 ISV  179 (181)
Q Consensus       177 ~~~  179 (181)
                      +.+
T Consensus       153 i~~  155 (200)
T smart00176      153 LIG  155 (200)
T ss_pred             HHh
Confidence            754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.2e-31  Score=178.31  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=114.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccccc-CccceeEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      ++|+++|++|+|||||+.+++.+.+.... |+.+.....+...+  ..+.+||++|++..     .+++.+|++++|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEEC
Confidence            48999999999999999999988765533 33333334455555  67899999998752     356789999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccCCCCHHHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEGLDWL  173 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i  173 (181)
                      ++++||+.+..|+..+......+++|+++|+||+|+.... .+++......... ...++.|++|||++|+||+++|+.+
T Consensus        76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~  154 (158)
T cd04103          76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA  154 (158)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence            9999999999999988776544679999999999974311 1111111111111 1234689999999999999999999


Q ss_pred             Hhhh
Q 030233          174 SNNI  177 (181)
Q Consensus       174 ~~~~  177 (181)
                      .+.+
T Consensus       155 ~~~~  158 (158)
T cd04103         155 AQKI  158 (158)
T ss_pred             HhhC
Confidence            8653

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.3e-31  Score=184.53  Aligned_cols=158  Identities=23%  Similarity=0.367  Sum_probs=126.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...++|+++|++|+|||||++++.++.+. .+.+|.+.....  +...  ...+.+||+||++.+...+..+++.+++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            34689999999999999999999998864 456777755433  3333  357899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|||++++++|..+..|+..+....  ...|+++|+||+|+.+...  .++.....     ...+.+++++||++|.|++
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~  156 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE  156 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence            9999999999999999998875542  5789999999999875322  23222222     1234579999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|+++.+.+..
T Consensus       157 ~lf~~l~~~~~~  168 (199)
T cd04110         157 EMFNCITELVLR  168 (199)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.6e-31  Score=179.14  Aligned_cols=156  Identities=24%  Similarity=0.418  Sum_probs=124.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ..++|+++|+++||||||++++.++.+. .+.++.+.+...  +...+  ..+.+||+||++.+...+..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            3579999999999999999999988854 456777654433  33433  578999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |+|++++.++..+..|+..+.+.. ..+.|+++|+||+|+....  ..++.....     ...+++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~  155 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEE  155 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHH
Confidence            999999999999999988876653 2468999999999986532  233333322     12345799999999999999


Q ss_pred             HHHHHHhhh
Q 030233          169 GLDWLSNNI  177 (181)
Q Consensus       169 l~~~i~~~~  177 (181)
                      +|+++.+.+
T Consensus       156 l~~~l~~~i  164 (165)
T cd01868         156 AFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=4.9e-31  Score=176.11  Aligned_cols=156  Identities=15%  Similarity=0.242  Sum_probs=121.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++|+|||||+++++++.+.. ..++.+.+...  ...  ....+.+|||+|++.+...+..+++.+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            589999999999999999999887643 34454443332  222  3467899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      |++++.++..+..|+..+.+.  .++.|+++|+||+|+.+.. .++.. .+    ....+++++++||++|.|++++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~~l~~~  152 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NF----AEKHNLPLYYVSAADGTNVVKLFQD  152 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999998888887543  2478999999999985321 11111 11    1123458999999999999999999


Q ss_pred             HHhhhhccC
Q 030233          173 LSNNISVKN  181 (181)
Q Consensus       173 i~~~~~~~~  181 (181)
                      +.+.+.+++
T Consensus       153 l~~~~~~~~  161 (161)
T cd04124         153 AIKLAVSYK  161 (161)
T ss_pred             HHHHHHhcC
Confidence            999887653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.8e-31  Score=179.40  Aligned_cols=157  Identities=22%  Similarity=0.317  Sum_probs=125.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .++|+++|++|+|||||++++.++.+.. +.++.+.+...  +..  ....+.+||+||++.+..++..+++.+|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            4899999999999999999999887543 45565654432  333  346899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|++++++++.+..|+..+.... .++.|+++|+||.|+.+.  ...++.....     ...++.++++||++|+|++++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~  157 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEA  157 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999998886643 267999999999998743  2333333322     223457999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+++.+.+.+
T Consensus       158 ~~~~~~~~~~  167 (168)
T cd01866         158 FINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHh
Confidence            9999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=6.3e-31  Score=180.17  Aligned_cols=157  Identities=19%  Similarity=0.369  Sum_probs=124.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +||+++|++|+|||||++++.++.+.  .+.+|.+.+...  +...  ...+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998864  456666655433  3333  46899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|++++++++.+..|+..+... ...++|+++|+||+|+...  ...++.....     ...+.+|+++||++|+|++++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~-----~~~~~~~~e~Sa~~~~~v~~l  154 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLA-----KEYGVPFMETSAKTGLNVELA  154 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence            9999999999999988887654 2247899999999998642  2223322222     123357999999999999999


Q ss_pred             HHHHHhhhhcc
Q 030233          170 LDWLSNNISVK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |+++.+.+.+.
T Consensus       155 ~~~l~~~~~~~  165 (191)
T cd04112         155 FTAVAKELKHR  165 (191)
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=99.98  E-value=1e-30  Score=176.01  Aligned_cols=159  Identities=18%  Similarity=0.291  Sum_probs=125.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...++|+++|++++|||||++++.++.+.. +.++.+....  .+..  ....+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            346899999999999999999999888654 4567665543  3333  4467899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCC-CCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           90 FVVDSSDRERISEARNELHQILSDN---ELSNAALLVFANKQDLPN-VMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +|||++++++++.+..|...+....   ...+.|+++|+||+|+.. ....+++.+....    ....+++++||++|.|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~  158 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN  158 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence            9999999999999998888776532   225689999999999853 2334444433221    1224799999999999


Q ss_pred             HHHHHHHHHhhh
Q 030233          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 i~~l~~~i~~~~  177 (181)
                      ++++|+++.+.+
T Consensus       159 v~~~~~~~~~~~  170 (170)
T cd04116         159 VAAAFEEAVRRV  170 (170)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.98  E-value=2.4e-30  Score=171.93  Aligned_cols=156  Identities=37%  Similarity=0.655  Sum_probs=132.1

Q ss_pred             EEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           20 LLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      |+++|++|+|||||++++.+..+ ..+.|+.+.....+......+.+||+||++.+...+..++..+|++++|+|+++++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   81 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT   81 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence            78999999999999999999874 45677888777777777899999999999999999999999999999999999988


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233           99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      ++.....++..+.......++|+++|+||+|+.+....+++.............++++++||++|.|+++++++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            89888888888776544468999999999998776555555555544433445678999999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04113 Rab4 Rab4 subfamily

Probab=99.98  E-value=2.2e-31  Score=177.74  Aligned_cols=154  Identities=21%  Similarity=0.358  Sum_probs=122.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++++|||||++++.++.+ ....++.+....  .+...  ...+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999998885 444555554433  33333  367899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+++++++..+..|+..+.... .++.|+++++||+|+.+..  ..++......     ..++.++++||++|+|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~  154 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQ-----ENGLLFLETSALTGENVEEAF  154 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence            9999999999999988765432 3689999999999986532  2333333221     233689999999999999999


Q ss_pred             HHHHhhh
Q 030233          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      +++++.+
T Consensus       155 ~~~~~~~  161 (161)
T cd04113         155 LKCARSI  161 (161)
T ss_pred             HHHHHhC
Confidence            9998764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01864 Rab19 Rab19 subfamily

Probab=99.98  E-value=8.4e-31  Score=175.67  Aligned_cols=157  Identities=22%  Similarity=0.369  Sum_probs=123.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +.+||+++|++|+|||||++++.++.+.. +.++.+...  ..+...+  ..+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999877543 455655433  3444444  588999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||++++.++..+..|+..+.... ..++|+++|+||+|+.+..  ..++......    ......++++||++|+|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~  156 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEE  156 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHH
Confidence            999999999999999988886542 3579999999999986532  2222222221    11224689999999999999


Q ss_pred             HHHHHHhhh
Q 030233          169 GLDWLSNNI  177 (181)
Q Consensus       169 l~~~i~~~~  177 (181)
                      +|+++.+.+
T Consensus       157 ~~~~l~~~l  165 (165)
T cd01864         157 AFLLMATEL  165 (165)
T ss_pred             HHHHHHHhC
Confidence            999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=5.6e-32  Score=170.08  Aligned_cols=158  Identities=22%  Similarity=0.281  Sum_probs=130.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      -++|+++|..|+|||+|+++|..+-++ ....|+|+....  ++.  +.++++||||+|+++|+++...+++.++++|+|
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            479999999999999999999988864 567888866554  333  678999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ||++-..+|+.+.+|+.++.+. ...++.-|+|+||.|+.+   .+++.............+.|.++||++.+|++.+|.
T Consensus        87 ydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~d---rrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLAD---RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhh---hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            9999999999999999998654 335777899999999876   333333333333344667799999999999999999


Q ss_pred             HHHhhhh
Q 030233          172 WLSNNIS  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      .++..+.
T Consensus       163 ~~a~rli  169 (213)
T KOG0095|consen  163 DLACRLI  169 (213)
T ss_pred             HHHHHHH
Confidence            9887654

>cd04134 Rho3 Rho3 subfamily

Probab=99.98  E-value=8.3e-32  Score=184.20  Aligned_cols=159  Identities=19%  Similarity=0.211  Sum_probs=121.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      ||+++|++|+|||||++++.++.++. +.||.+.... .+..  ....+.+|||+|++.+..++..+++.+|++++|||+
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv   81 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV   81 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence            79999999999999999999988754 5667665443 2333  336899999999999999999999999999999999


Q ss_pred             CCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHH---------hhhCcccc-CCccEEEEEeeccCC
Q 030233           95 SDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVA---------DKLELYSL-GQRRWSIQSCSAISG  163 (181)
Q Consensus        95 ~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~Sa~~~  163 (181)
                      +++++|+.+. .|+..+...  .++.|+++|+||+|+.......+..         .......+ ....+.|++|||++|
T Consensus        82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            9999999886 466666543  2579999999999997643322110         00001111 112367999999999


Q ss_pred             CCHHHHHHHHHhhhhc
Q 030233          164 QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (181)
                      +|++++|+++.+.+..
T Consensus       160 ~~v~e~f~~l~~~~~~  175 (189)
T cd04134         160 RGVNEAFTEAARVALN  175 (189)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999988764

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.98  E-value=2.1e-31  Score=179.46  Aligned_cols=158  Identities=20%  Similarity=0.370  Sum_probs=124.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhH-HHHHhhccCCCEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIR-ALWRHYFRDTLGLTF   90 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~-~~~~~~~~~~d~ii~   90 (181)
                      .++|+++|++|+|||||+++++++.+. .+.++.+....  .+...  ...+.+||++|++.+. .++..+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            579999999999999999999988864 45666665443  34343  3789999999999887 568888999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccC---CCCH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAIS---GQGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i  166 (181)
                      |||+++++++..+..|+..+.......++|+++|+||+|+...... .+....+.    ...+++|+++||++   +.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i  157 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV  157 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence            9999999999999999988876544467999999999998653221 11222221    22346799999999   9999


Q ss_pred             HHHHHHHHhhhh
Q 030233          167 YEGLDWLSNNIS  178 (181)
Q Consensus       167 ~~l~~~i~~~~~  178 (181)
                      +++|..+.+.+.
T Consensus       158 ~~~f~~l~~~~~  169 (170)
T cd04115         158 EAIFMTLAHKLK  169 (170)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PLN03110 Rab GTPase; Provisional

Probab=99.98  E-value=2.7e-31  Score=184.99  Aligned_cols=160  Identities=22%  Similarity=0.375  Sum_probs=128.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...+||+++|++|+|||||++++.++.+. .+.+|.+.+..  .+...  ...+.+||++|++.+...+..+++.+++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            45689999999999999999999988864 55677776643  34443  368999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.... ++....+.    ...+++++++||++|.|+++
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~  164 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK  164 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999988776542 257999999999998653222 12222222    22456899999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|+++.+.+.+
T Consensus       165 lf~~l~~~i~~  175 (216)
T PLN03110        165 AFQTILLEIYH  175 (216)
T ss_pred             HHHHHHHHHHH
Confidence            99999887754

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.98  E-value=7.5e-31  Score=177.16  Aligned_cols=157  Identities=21%  Similarity=0.232  Sum_probs=117.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      ++|+++|++|||||||+.+++.+.+. .+.||.+.... .+..  ....+.+|||+|++.+...+..+++.+|++|+|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            68999999999999999999998864 45666653322 2333  34678999999999999999999999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhh--------hCccccC-CccEEEEEeeccC
Q 030233           94 SSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADK--------LELYSLG-QRRWSIQSCSAIS  162 (181)
Q Consensus        94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~--------~~~~~~~-~~~~~~~~~Sa~~  162 (181)
                      ++++++|+.+.. |+..+...  .++.|+++|+||+|+.+... .+.+...        ....... .....+++|||++
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999975 65555443  25799999999999854211 1111111        0000011 1224899999999


Q ss_pred             CCCHHHHHHHHHhh
Q 030233          163 GQGLYEGLDWLSNN  176 (181)
Q Consensus       163 ~~~i~~l~~~i~~~  176 (181)
                      |+|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999999865

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.98  E-value=3e-31  Score=177.27  Aligned_cols=152  Identities=18%  Similarity=0.343  Sum_probs=121.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +||+++|++++|||||+++++++.+. .+.+|.+.+...  +.+    ....+.+|||||++++...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            48999999999999999999988754 456777665433  333    35789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||++++++++.+..|+..+....  .+.|+++|+||+|+....  +.++.....     ...+++++++||++|.|+++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~  153 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE  153 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence            999999999999999888775432  579999999999986532  223332222     12334799999999999999


Q ss_pred             HHHHHHhh
Q 030233          169 GLDWLSNN  176 (181)
Q Consensus       169 l~~~i~~~  176 (181)
                      +|++|..+
T Consensus       154 l~~~l~~~  161 (162)
T cd04106         154 LFEYLAEK  161 (162)
T ss_pred             HHHHHHHh
Confidence            99999865

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03118 Rab family protein; Provisional

Probab=99.98  E-value=5e-31  Score=183.28  Aligned_cols=160  Identities=20%  Similarity=0.339  Sum_probs=126.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ...++|+++|++|+|||||+++++++.+..+.++.+.+...  +...  ...+.+|||||++.+...+..+++.+|++++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            35789999999999999999999998887788888765543  3333  4678999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           91 VVDSSDRERISEARNELHQILSD-NELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      |||++++++|..+..++...+.. ....+.|+++|+||+|+.....  .++.....     ...+..|+++||++|.|++
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~-----~~~~~~~~e~SAk~~~~v~  166 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA-----KEHGCLFLECSAKTRENVE  166 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence            99999999999998755444432 2234689999999999865322  22222211     2234579999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (211)
T PLN03118        167 QCFEELALKIME  178 (211)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=3e-30  Score=172.55  Aligned_cols=155  Identities=22%  Similarity=0.397  Sum_probs=125.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE--EEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV--EAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~--~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ++||+++|++++|||||++++.++.+.. ..++.+...  ..+.+  ....+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            4799999999999999999999998665 667776443  33344  446889999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|+++++++.....|+..+..... +..|+++++||+|+...  ...++......     ..+..++++||++|.|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l  154 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL  154 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence            999999999999999888876543 67999999999998642  23333333221     12357999999999999999


Q ss_pred             HHHHHhhh
Q 030233          170 LDWLSNNI  177 (181)
Q Consensus       170 ~~~i~~~~  177 (181)
                      |+++.+.+
T Consensus       155 ~~~l~~~l  162 (163)
T cd01860         155 FTEIAKKL  162 (163)
T ss_pred             HHHHHHHh
Confidence            99998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=1e-30  Score=174.69  Aligned_cols=154  Identities=25%  Similarity=0.393  Sum_probs=126.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      ||+++|+++||||||++++.++.++ .+.+|.+.+......    ....+.+||++|++.+...+..+++.+|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7999999999999999999998854 456777666554433    45679999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +++++|+..+..|+..+..... .+.|+++++||+|+.+  ..+.++.....     ...+.+|+++||+++.|+.++|.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~  154 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ  154 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred             cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence            9999999999999988866533 4699999999999875  33444433333     22336899999999999999999


Q ss_pred             HHHhhhh
Q 030233          172 WLSNNIS  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      .+.+.+.
T Consensus       155 ~~i~~i~  161 (162)
T PF00071_consen  155 ELIRKIL  161 (162)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=4e-30  Score=181.74  Aligned_cols=156  Identities=21%  Similarity=0.200  Sum_probs=124.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccce-eEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGF-NVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~-~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      ++|+++|++|+|||||+++++++.+. .+.+|.+. ....+.+.+  ..+.+|||+|++.+..++..++..+|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999988875 45666652 233344443  678899999999999888888999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCC--------CCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           94 SSDRERISEARNELHQILSDN--------ELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      ++++++|+.+..|+..+....        ...+.|+++|+||+|+..  ....+++......    ...+.++++||++|
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg  156 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN  156 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence            999999999999988886531        235799999999999864  3344555544421    12457999999999


Q ss_pred             CCHHHHHHHHHhhh
Q 030233          164 QGLYEGLDWLSNNI  177 (181)
Q Consensus       164 ~~i~~l~~~i~~~~  177 (181)
                      .|++++|++|....
T Consensus       157 ~gI~elf~~L~~~~  170 (247)
T cd04143         157 SNLDEMFRALFSLA  170 (247)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04118 Rab24 Rab24 subfamily

Probab=99.97  E-value=8.4e-31  Score=179.89  Aligned_cols=155  Identities=18%  Similarity=0.277  Sum_probs=122.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +||+++|++|+|||||+++++++.+.  .+.+|.+....  .+...+  ..+.+||++|.+.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            48999999999999999999998865  36777775443  344443  5677999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP------TAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      ||++++++++....|+..+....  ++.|+++|+||+|+.+...      .++.....     ...+.+++++||++|+|
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g  153 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFA-----DEIKAQHFETSSKTGQN  153 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence            99999999999988888876542  4789999999999854221      11222211     22345799999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 030233          166 LYEGLDWLSNNISV  179 (181)
Q Consensus       166 i~~l~~~i~~~~~~  179 (181)
                      ++++|+++.+.+.+
T Consensus       154 v~~l~~~i~~~~~~  167 (193)
T cd04118         154 VDELFQKVAEDFVS  167 (193)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987754

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=8.6e-32  Score=171.50  Aligned_cols=161  Identities=22%  Similarity=0.412  Sum_probs=134.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccc-cCccceeEEE--EEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA--VEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~--~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .++++.++|++-+|||||+.++..+.++.. .||.|++...  ++.   ..+++++|||+|+++++++...+++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            478999999999999999999999998764 6888866443  333   4578999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNA-ALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +|||++|.+||+.+..|+.+.......+.. -..+|++|+|+..   .+++..+.+.+.+...++.|+|+||++|.|+++
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S---qRqVt~EEaEklAa~hgM~FVETSak~g~NVeE  163 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS---QRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE  163 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh---hccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence            999999999999999999887665553444 4568999999975   555555555555577888999999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      .|..+.+.+..
T Consensus       164 AF~mlaqeIf~  174 (213)
T KOG0091|consen  164 AFDMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHHHH
Confidence            99999887653

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=5.8e-30  Score=170.88  Aligned_cols=155  Identities=21%  Similarity=0.373  Sum_probs=124.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++++|||||++++.++.+. ...++.+.+...  +.+  ....+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999988764 366777655433  333  3468999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      |++++.++.....|+..+.......+.|+++|+||+|+.... ..++.....     ...+++++++||++|.|++++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~  155 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE  155 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence            999999999999988887766555689999999999997332 333333322     22356799999999999999999


Q ss_pred             HHHhhh
Q 030233          172 WLSNNI  177 (181)
Q Consensus       172 ~i~~~~  177 (181)
                      ++.+++
T Consensus       156 ~~~~~~  161 (161)
T cd01863         156 ELVEKI  161 (161)
T ss_pred             HHHHhC
Confidence            998753

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=7.7e-30  Score=170.68  Aligned_cols=157  Identities=22%  Similarity=0.427  Sum_probs=124.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++++|||||++++.+..+. ...++.+.+..  .+...+  ..+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999988753 34456565433  334433  68899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |++++.+++.+..|+..+..... +++|+++++||+|+.+..  ..+......     ...+++++++||++|+|++++|
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~l~  154 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFA-----EEHGLPFFETSAKTNTNVEEAF  154 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999888887765532 589999999999986522  333333322     1234579999999999999999


Q ss_pred             HHHHhhhhcc
Q 030233          171 DWLSNNISVK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      +++.+.+.++
T Consensus       155 ~~i~~~~~~~  164 (164)
T smart00175      155 EELAREILKR  164 (164)
T ss_pred             HHHHHHHhhC
Confidence            9999988654

Rab GTPases are implicated in vesicle trafficking.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=2e-30  Score=173.62  Aligned_cols=154  Identities=18%  Similarity=0.264  Sum_probs=120.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC--Cc-ccccCccceeEEE--EEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG--EI-VTTTPTIGFNVEA--VEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~--~~-~~~~~~~~~~~~~--~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      +||+++|++|||||||++++..+  .+ ..+.++.+.+...  +..   ....+.+|||||++.+..++..+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999864  33 4566777755433  322   3478999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-VADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +|+|+++++++..+..|+..+....  .+.|+++|+||+|+.+...... ......    ...+.+++++||++|.|+++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~  154 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE  154 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence            9999999999999988888876543  4699999999999865432211 111111    12235799999999999999


Q ss_pred             HHHHHHhhh
Q 030233          169 GLDWLSNNI  177 (181)
Q Consensus       169 l~~~i~~~~  177 (181)
                      +|+.+.+.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04101         155 PFESLARAF  163 (164)
T ss_pred             HHHHHHHHh
Confidence            999998864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=5.4e-30  Score=175.05  Aligned_cols=155  Identities=18%  Similarity=0.207  Sum_probs=119.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++|+++|++|+|||||+++++++.+. .+.++.+..+. .+..   ....+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            48999999999999999999998864 44566554432 2333   2467899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCC------CHHHHHhhhCccccCCccE-EEEEeeccCCC
Q 030233           93 DSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVM------PTAEVADKLELYSLGQRRW-SIQSCSAISGQ  164 (181)
Q Consensus        93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (181)
                      |++++++|+.+.. |+..+...  .++.|+++|+||+|+....      ..++.....     ...+. +++++||++|+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~  153 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVA-----KKQGAFAYLECSAKTME  153 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHH-----HHcCCcEEEEccCCCCC
Confidence            9999999999865 65555432  2578999999999986532      122222211     11223 79999999999


Q ss_pred             CHHHHHHHHHhhhhc
Q 030233          165 GLYEGLDWLSNNISV  179 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (181)
                      |++++|+.+.+.+..
T Consensus       154 ~v~~~f~~l~~~~~~  168 (187)
T cd04132         154 NVEEVFDTAIEEALK  168 (187)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988765

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=4e-30  Score=172.90  Aligned_cols=155  Identities=21%  Similarity=0.155  Sum_probs=122.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      .+.++|+++|++|+|||||+++++++.+.  .+.||.+....  .+...+  ..+.+||++|++.+...+..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35689999999999999999999998874  56788775543  344433  6789999999999988888899999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-----HHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-----TAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      ++|+|++++++++.+..|+..+...   .++|+++|+||+|+.+...     .+++.+....       ..++++||++|
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~  151 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML---GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLG  151 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC---CCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccC
Confidence            9999999999999988888765332   4799999999999864321     2233222211       13689999999


Q ss_pred             CCHHHHHHHHHhhhhc
Q 030233          164 QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (181)
                      +|++++|+.+.+.+..
T Consensus       152 ~~v~~lf~~l~~~~~~  167 (169)
T cd01892         152 DSSNELFTKLATAAQY  167 (169)
T ss_pred             ccHHHHHHHHHHHhhC
Confidence            9999999999988754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.7e-30  Score=164.03  Aligned_cols=158  Identities=23%  Similarity=0.342  Sum_probs=129.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      -+|++++|+.|+|||+|+.+|..+.+.+ .++|+|+...  .+..  ..++++||||+|+++|++....+++.+.+.++|
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV   88 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   88 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence            4789999999999999999999988654 5678876544  4444  668999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ||++++++|..+..|+..+... ..+++-+++++||.|+.+.   +++.-.....++++..+.+.++||++|+|+++.|-
T Consensus        89 YD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~---R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl  164 (214)
T KOG0086|consen   89 YDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPE---REVTFLEASRFAQENELMFLETSALTGENVEEAFL  164 (214)
T ss_pred             EeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChh---hhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence            9999999999999999988554 3367889999999999873   33333333334456667899999999999999997


Q ss_pred             HHHhhhh
Q 030233          172 WLSNNIS  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      ...+.+.
T Consensus       165 ~c~~tIl  171 (214)
T KOG0086|consen  165 KCARTIL  171 (214)
T ss_pred             HHHHHHH
Confidence            7666554

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=2.8e-30  Score=172.42  Aligned_cols=154  Identities=21%  Similarity=0.359  Sum_probs=121.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|+++||||||++++.+..+. .+.++.+.+..  .+...+  ..+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999988754 34555554433  344433  57899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+++++++.....|+..+..... .+.|+++++||+|+.+.  ...++.....     ...++.++++||++|.|++++|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~  154 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELF  154 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999888765432 36999999999999542  2223322222     1234679999999999999999


Q ss_pred             HHHHhhh
Q 030233          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      +++.+.+
T Consensus       155 ~~i~~~l  161 (161)
T cd01861         155 RKIASAL  161 (161)
T ss_pred             HHHHHhC
Confidence            9998753

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=2.6e-30  Score=179.41  Aligned_cols=159  Identities=21%  Similarity=0.310  Sum_probs=126.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...+||+++|++|+|||||++++++..+. .+.++.+.+..  .+...  ...+.+|||+|++.+..++..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            35689999999999999999999988754 35567665543  33343  357889999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|||+++++++..+..|+..+.... ....|+++++||+|+.+.  .+.++.....     ...+++++++||++|.|++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~  157 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVE  157 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence            9999999999999989888775443 257999999999998653  2333333322     2234579999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|+++++.+.+
T Consensus       158 e~f~~l~~~~~~  169 (210)
T PLN03108        158 EAFIKTAAKIYK  169 (210)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887754

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=8.4e-31  Score=177.08  Aligned_cols=158  Identities=20%  Similarity=0.207  Sum_probs=116.8

Q ss_pred             EEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           20 LLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      |+++|++|+|||||+++++++.+.. +.++...... .+..  ....+.+|||||++.+...+..+++.+|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            5899999999999999999988644 4455443332 2333  3357899999999999999999999999999999999


Q ss_pred             CcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHH--------hhhCccccCCcc-EEEEEeeccCCC
Q 030233           96 DRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVA--------DKLELYSLGQRR-WSIQSCSAISGQ  164 (181)
Q Consensus        96 ~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~--------~~~~~~~~~~~~-~~~~~~Sa~~~~  164 (181)
                      ++++|+.+.. |+..+....  ++.|+++|+||+|+..... .+.+.        .......+...+ ..+++|||++|.
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999865 666664432  5899999999999865221 11110        000001112223 379999999999


Q ss_pred             CHHHHHHHHHhhhhc
Q 030233          165 GLYEGLDWLSNNISV  179 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (181)
                      |++++|+.+.+.+.+
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999987754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=1.9e-29  Score=170.05  Aligned_cols=159  Identities=17%  Similarity=0.264  Sum_probs=122.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++|+|||||++++.++.+. ...++.+.+..  .+.+.  ...+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988753 34455554432  23343  356789999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           93 DSSDRERISEARNELHQILSDN---ELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      |+++++++.....|...++...   ...+.|+++|+||+|+.+  ....++......    .....+++++||++|.|++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~  156 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVE  156 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHH
Confidence            9999999988888777665432   234799999999999973  223444333322    1223589999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|+++.+.+.++
T Consensus       157 ~l~~~i~~~~~~~  169 (172)
T cd01862         157 QAFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999877654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=2.1e-30  Score=174.23  Aligned_cols=157  Identities=18%  Similarity=0.238  Sum_probs=123.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      .++|+++|.+|+|||||++++.++.+. .+.++.+.... .+..  ....+.+|||||++.+..++..+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            368999999999999999999988864 45666654332 2333  3368899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |++++++++....|...+.+.....+.|+++++||+|+.....  .++......    .....+++++||++|.|++++|
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~~f  156 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDEVF  156 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHHHH
Confidence            9999999999998888876644446899999999999865322  222222111    1123689999999999999999


Q ss_pred             HHHHhhh
Q 030233          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      +++...+
T Consensus       157 ~~i~~~~  163 (168)
T cd04177         157 IDLVRQI  163 (168)
T ss_pred             HHHHHHH
Confidence            9998765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.97  E-value=4.5e-30  Score=160.86  Aligned_cols=175  Identities=31%  Similarity=0.594  Sum_probs=159.3

Q ss_pred             chHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh
Q 030233            3 KLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY   81 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~   81 (181)
                      +.+.|+.+.++ ..++.+.++|-.++|||||+|.++.+.+ ....||.|++-+.++-....+.+||.||++.+++.|+.+
T Consensus         7 k~L~wi~~~f~-k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWery   85 (186)
T KOG0075|consen    7 KKLVWICNSFW-KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY   85 (186)
T ss_pred             HHHHHHHHHHH-HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHH
Confidence            34555555555 5578999999999999999999998775 456899999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      ++.+++++||+|+++++.+...+..+..++..+...++|+++++||.|++...+...+-..+.+.....+.+-+|.+||+
T Consensus        86 cR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siSck  165 (186)
T KOG0075|consen   86 CRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCK  165 (186)
T ss_pred             hhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEc
Confidence            99999999999999999999999999999999888999999999999999999999999999998888889999999999


Q ss_pred             CCCCHHHHHHHHHhhhh
Q 030233          162 SGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~~  178 (181)
                      +..|++-+.+||.+...
T Consensus       166 e~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  166 EKVNIDITLDWLIEHSK  182 (186)
T ss_pred             CCccHHHHHHHHHHHhh
Confidence            99999999999998754

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=9.7e-31  Score=179.13  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=112.2

Q ss_pred             ccEEEEEcCCCCChHHHHH-hhhcCCc------ccccCccce-e-EE-----------EEEECCeEEEEEEcCCChhhHH
Q 030233           17 RIKLLMVGLDASGKTTILY-KMKLGEI------VTTTPTIGF-N-VE-----------AVEYKNKSFCVWDVGGQNKIRA   76 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~-~~~~~~~------~~~~~~~~~-~-~~-----------~~~~~~~~~~i~d~~g~~~~~~   76 (181)
                      .+||+++|++++|||||+. ++.++.+      ..+.||++. . +.           .+......+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5799999999999999995 6655432      345677752 2 11           1122457899999999875  3


Q ss_pred             HHHhhccCCCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----------------HHHH
Q 030233           77 LWRHYFRDTLGLTFVVDSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMP----------------TAEV  139 (181)
Q Consensus        77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------------~~~~  139 (181)
                      ....+++.+|++++|||+++++||+.+.. |+..+....  ++.|+++|+||+|+.....                ...+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            45668899999999999999999999974 766664432  4789999999999864210                0111


Q ss_pred             HhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          140 ADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      ........+...+++|++|||++|+|++++|+.+.++
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            2222222223455689999999999999999999865

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=1.4e-29  Score=169.36  Aligned_cols=157  Identities=24%  Similarity=0.297  Sum_probs=123.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      +||+++|++|+|||||++++++..+. ...++.+..... ...  ....+.+||+||++.+...+..+++.++++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999988754 334444433222 222  34679999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +++++++.....|+..+.......+.|+++|+||+|+...  ...++.....     ...+.+++++||++|+|++++|+
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~  155 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence            9999999999999988887654568999999999998652  2223222222     11235799999999999999999


Q ss_pred             HHHhhhhc
Q 030233          172 WLSNNISV  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      ++.+.+.+
T Consensus       156 ~l~~~~~~  163 (164)
T cd04139         156 DLVREIRQ  163 (164)
T ss_pred             HHHHHHHh
Confidence            99988764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=9.9e-30  Score=174.71  Aligned_cols=159  Identities=17%  Similarity=0.178  Sum_probs=118.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE--EEEEECC--eEEEEEEcCCChhhH--------HHHHhhccC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIR--------ALWRHYFRD   84 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~--------~~~~~~~~~   84 (181)
                      ++|+++|++|+|||||+++++++.+.. +.||.+...  ..+.+.+  ..+.+|||||.+.+.        ......++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            589999999999999999999988654 566665433  2344444  678899999965431        123345788


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeec
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDN--ELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +|++++|||+++++|++.+..|+..+.+..  ...++|+++|+||+|+....  +.++......    +..+++|++|||
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa  156 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSA  156 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecC
Confidence            999999999999999999999988887653  24679999999999995532  2222221111    123568999999


Q ss_pred             cCCCCHHHHHHHHHhhhhcc
Q 030233          161 ISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ++|.|++++|+.+.+.+..+
T Consensus       157 k~g~~v~~lf~~i~~~~~~~  176 (198)
T cd04142         157 KYNWHILLLFKELLISATTR  176 (198)
T ss_pred             CCCCCHHHHHHHHHHHhhcc
Confidence            99999999999999876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=1.2e-29  Score=170.27  Aligned_cols=158  Identities=13%  Similarity=0.181  Sum_probs=115.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCcccee-EEE--EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN-VEA--VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      +||+++|++|+|||||++++.++.++...++.... ...  +......+.+|||||.+.+...+...+..+|++++|||+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            48999999999999999999998875544332211 111  222567899999999988888777888999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      +++++++.+..+|...++... .+.|+++|+||+|+.+....    +++......  .. ....+++|||++|.|++++|
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~-~~~~~~e~Sa~~~~~v~~lf  156 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--FR-EIETCVECSAKTLINVSEVF  156 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--Hh-cccEEEEeccccccCHHHHH
Confidence            999999998654433333222 47999999999999764432    111111100  01 11279999999999999999


Q ss_pred             HHHHhhhhc
Q 030233          171 DWLSNNISV  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      +.+.+.+..
T Consensus       157 ~~~~~~~~~  165 (166)
T cd01893         157 YYAQKAVLH  165 (166)
T ss_pred             HHHHHHhcC
Confidence            999887754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=6.1e-30  Score=178.66  Aligned_cols=154  Identities=17%  Similarity=0.146  Sum_probs=116.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc--cccCccc--eeEEEEEE--CCeEEEEEEcCCChhhHHHHHhhcc-CCCEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIG--FNVEAVEY--KNKSFCVWDVGGQNKIRALWRHYFR-DTLGLTF   90 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~-~~d~ii~   90 (181)
                      +||+++|++|+|||||+++++++.+.  .+.++.+  .....+.+  ....+.+||+||++.  .....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999887763  4555553  23333444  557899999999882  23445566 8999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||++++++|.....|+..+.......+.|+++|+||+|+.+...  .++... +.    ...+++++++||++|.|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~SA~~~~gv~~  153 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRA-CA----VVFDCKFIETSAGLQHNVDE  153 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHH-HH----HHcCCeEEEecCCCCCCHHH
Confidence            999999999999999988876654446799999999999865322  222211 11    22345799999999999999


Q ss_pred             HHHHHHhhhh
Q 030233          169 GLDWLSNNIS  178 (181)
Q Consensus       169 l~~~i~~~~~  178 (181)
                      +|+++.+.+.
T Consensus       154 l~~~l~~~~~  163 (221)
T cd04148         154 LLEGIVRQIR  163 (221)
T ss_pred             HHHHHHHHHH
Confidence            9999998875

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=1.4e-29  Score=171.11  Aligned_cols=158  Identities=18%  Similarity=0.164  Sum_probs=115.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE-EEEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV-EAVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      +||+++|++|+|||||+++++++.+.. +.++..... ..+...  ...+.+|||||++.+...+..+++.+|++++|+|
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            589999999999999999999988643 455554222 233343  3567899999999999999999999999999999


Q ss_pred             CCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---------cccc-CCccEEEEEeeccC
Q 030233           94 SSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---------LYSL-GQRRWSIQSCSAIS  162 (181)
Q Consensus        94 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~Sa~~  162 (181)
                      ++++++|+.... |+..+...  .++.|+++++||+|+.+............         ...+ .....++++|||++
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999875 44444333  36899999999999865322111000000         0000 11223699999999


Q ss_pred             CCCHHHHHHHHHhhh
Q 030233          163 GQGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (181)
                      |.|++++|+.+.+.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=3.9e-30  Score=173.69  Aligned_cols=156  Identities=19%  Similarity=0.182  Sum_probs=112.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE-EEEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV-EAVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      +|++++|++|+|||||+.++.++.+.. +.+|..... ..+...  ...+.+|||||++.+...+..+++.+|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            589999999999999999999877544 444432111 123333  4678899999999999999999999999999999


Q ss_pred             CCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---------HHHHhhhCccccCCcc-EEEEEeeccC
Q 030233           94 SSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPT---------AEVADKLELYSLGQRR-WSIQSCSAIS  162 (181)
Q Consensus        94 ~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (181)
                      ++++++|+... .|+..+...  .++.|+++++||+|+......         ..+........+...+ ..|+++||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999986 466555433  247999999999998643210         0000000001111222 3799999999


Q ss_pred             CCCHHHHHHHHHh
Q 030233          163 GQGLYEGLDWLSN  175 (181)
Q Consensus       163 ~~~i~~l~~~i~~  175 (181)
                      |.|++++|+.+.-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=1.6e-29  Score=168.70  Aligned_cols=154  Identities=22%  Similarity=0.333  Sum_probs=119.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCcccee--EEEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFN--VEAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++|+|||||+++++++.+.. ..++....  ...+..  ....+.+||+||++.+...++.+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            589999999999999999999887543 33343322  223333  3357899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+++++++.....|+..+..... .+.|+++++||+|+.....  .+++....     ...+.+++++||++|+|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~  154 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF  154 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999888887765433 3799999999999875322  23333322     1234578999999999999999


Q ss_pred             HHHHhhh
Q 030233          171 DWLSNNI  177 (181)
Q Consensus       171 ~~i~~~~  177 (181)
                      +++.+.+
T Consensus       155 ~~l~~~~  161 (162)
T cd04123         155 LSLAKRM  161 (162)
T ss_pred             HHHHHHh
Confidence            9998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.6e-31  Score=168.67  Aligned_cols=159  Identities=25%  Similarity=0.430  Sum_probs=131.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccc-cCccceeEEE--EEE-----------CCeEEEEEEcCCChhhHHHHHhhcc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA--VEY-----------KNKSFCVWDVGGQNKIRALWRHYFR   83 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~--~~~-----------~~~~~~i~d~~g~~~~~~~~~~~~~   83 (181)
                      ++.+.+|++|+||||++.++..+.+... ..|.|++.+.  +-+           ..+.+++|||+|+++|+++...+++
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR   89 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR   89 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence            5778999999999999999998887554 4556655443  333           2367999999999999999999999


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      ++-+++++||++++.||-+++.|+..+..+..-.++.+++++||+|+.+   .+++.+......+...++|||++||-+|
T Consensus        90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~---~R~Vs~~qa~~La~kyglPYfETSA~tg  166 (219)
T KOG0081|consen   90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED---QRVVSEDQAAALADKYGLPYFETSACTG  166 (219)
T ss_pred             hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh---hhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence            9999999999999999999999999998887667888999999999976   4444444444444567789999999999


Q ss_pred             CCHHHHHHHHHhhhhc
Q 030233          164 QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (181)
                      .|+++..+.+...+.+
T Consensus       167 ~Nv~kave~LldlvM~  182 (219)
T KOG0081|consen  167 TNVEKAVELLLDLVMK  182 (219)
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999998888776544

>cd00154 Rab Rab family

Probab=99.97  E-value=1.7e-28  Score=162.94  Aligned_cols=152  Identities=24%  Similarity=0.404  Sum_probs=124.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccc-cCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++++|||||++++.++.+... .++.+.+......    ....+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999886554 6677766555433    3478899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC--CCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP--NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+++++++..+..|+..+..... ...|+++++||+|+.  .....+++.....     ..+.+++++||++|.|+++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~  154 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF  154 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence            99999999999998888766532 579999999999995  3334444444332     245689999999999999999


Q ss_pred             HHHHh
Q 030233          171 DWLSN  175 (181)
Q Consensus       171 ~~i~~  175 (181)
                      ++|.+
T Consensus       155 ~~i~~  159 (159)
T cd00154         155 QSLAE  159 (159)
T ss_pred             HHHhC
Confidence            99863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=7.8e-30  Score=170.95  Aligned_cols=155  Identities=17%  Similarity=0.210  Sum_probs=114.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE-EEEEE--CCeEEEEEEcCCChhh-HHHHHhhccCCCEEEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV-EAVEY--KNKSFCVWDVGGQNKI-RALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~i~d~~g~~~~-~~~~~~~~~~~d~ii~v~d   93 (181)
                      +|+++|++|+|||||+++++.+.+. .+.++.+... ..+..  ....+.+||+||++.+ ......+++.+|++++|+|
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            5899999999999999999987753 4455543222 22333  3456889999998852 3456678889999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCC-CCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCC-CCHHHH
Q 030233           94 SSDRERISEARNELHQILSDNE-LSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISG-QGLYEG  169 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~l  169 (181)
                      ++++++|+.+..|+..+..... ..+.|+++|+||+|+.+..  +.++.....     ...+.+|+++||++| .|++++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~~v~~~  155 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA-----SELGCLFFEVSAAEDYDGVHSV  155 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH-----HHcCCEEEEeCCCCCchhHHHH
Confidence            9999999999888877655432 3579999999999985432  222222221     122357999999999 599999


Q ss_pred             HHHHHhhhh
Q 030233          170 LDWLSNNIS  178 (181)
Q Consensus       170 ~~~i~~~~~  178 (181)
                      |+++++.+.
T Consensus       156 f~~l~~~~~  164 (165)
T cd04146         156 FHELCREVR  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999998765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.1e-28  Score=169.94  Aligned_cols=156  Identities=17%  Similarity=0.209  Sum_probs=121.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccc-ccCccc-eeEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVT-TTPTIG-FNVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~-~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      ||+++|++|+|||||+++++++.+.. +.++.. .....+.+.+  ..+.+||+||+..+..++..++..+|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            58999999999999999999988654 344443 3333444444  6889999999999999988999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP---TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +++++++....|+..+.......+.|+++|+||+|+.+...   .+.......    ...+..++++||++|.|++++|+
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~  156 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK  156 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence            99999999999988887765446799999999999865211   112111111    12335799999999999999999


Q ss_pred             HHHhhhh
Q 030233          172 WLSNNIS  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      ++.+.+.
T Consensus       157 ~l~~~~~  163 (198)
T cd04147         157 ELLRQAN  163 (198)
T ss_pred             HHHHHhh
Confidence            9998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04114 Rab30 Rab30 subfamily

Probab=99.96  E-value=8.9e-29  Score=166.40  Aligned_cols=157  Identities=20%  Similarity=0.297  Sum_probs=120.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ..++|+++|++|+|||||++++.++.+. ...++.+...  ..+.+.+  ..+.+||+||++.+...+..++..+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            4589999999999999999999977643 4556655332  3344444  568999999999999998999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      |+|+.+++++.....|+..+... ...+.|+++++||+|+.+.... ......+.    .....+++++||++|.|++++
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l  160 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL  160 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence            99999999999888888766443 2247999999999998653221 22222221    112257999999999999999


Q ss_pred             HHHHHhhh
Q 030233          170 LDWLSNNI  177 (181)
Q Consensus       170 ~~~i~~~~  177 (181)
                      |+++.+.+
T Consensus       161 ~~~i~~~~  168 (169)
T cd04114         161 FLDLACRL  168 (169)
T ss_pred             HHHHHHHh
Confidence            99998754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=2.6e-30  Score=164.01  Aligned_cols=162  Identities=21%  Similarity=0.311  Sum_probs=127.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccc-cCccc--eeEEEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~--~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      +..+||++++|..-+|||||+-|++.+.|... ..|+.  +..+++.+  ...++.||||+|+++|.++-+-+|++++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            34579999999999999999999998876532 23322  33333434  456889999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      ++|||+++++||+.+..|..++..... ..+-+++|+||+|+..   .+.+........+..-+..|+++||+.+.||.+
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEe---eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e  165 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEE---ERQVTRQEAEAYAESVGALYMETSAKDNVGISE  165 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHH---hhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence            999999999999999999999876533 5688999999999865   222333222333345566799999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|+.+...+.+
T Consensus       166 lFe~Lt~~MiE  176 (218)
T KOG0088|consen  166 LFESLTAKMIE  176 (218)
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=2.7e-28  Score=165.73  Aligned_cols=157  Identities=20%  Similarity=0.262  Sum_probs=123.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCcccee-EEEEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFN-VEAVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      .||+++|++|+|||||++++.++.+.. ..++.+.. ...+...  ...+.+||+||++++...+..++..++++++|||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            589999999999999999999887643 44555432 3334443  3567899999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +++..+++....++..+++.....+.|+++++||+|+....  ..++.....     ...+.+++++||++|+|+.++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~  156 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-----ESWGAAFLESSARENENVEEAFE  156 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999988876555678999999999986422  222222211     12235799999999999999999


Q ss_pred             HHHhhhhc
Q 030233          172 WLSNNISV  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      ++.+.+..
T Consensus       157 ~l~~~~~~  164 (180)
T cd04137         157 LLIEEIEK  164 (180)
T ss_pred             HHHHHHHH
Confidence            99988754

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=1.8e-28  Score=165.77  Aligned_cols=159  Identities=23%  Similarity=0.286  Sum_probs=116.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE-EEEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV-EAVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +.||+++|++|||||||+++++++.+. .+.+|.+... ..+..  ....+.+|||+|++.+...+...+..+|++++||
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            368999999999999999999998865 3556665443 23344  3457899999999999988888889999999999


Q ss_pred             ECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhC--------cccc-CCccEEEEEeecc
Q 030233           93 DSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLE--------LYSL-GQRRWSIQSCSAI  161 (181)
Q Consensus        93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~--------~~~~-~~~~~~~~~~Sa~  161 (181)
                      |+++++++..+.. |...+...  ..+.|+++|+||+|+.+.... +++.....        .... .....++++|||+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999988865 55544432  257899999999998653211 11110000        0000 1123479999999


Q ss_pred             CCCCHHHHHHHHHhhh
Q 030233          162 SGQGLYEGLDWLSNNI  177 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~  177 (181)
                      +|.|++++|+++.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=6.8e-29  Score=167.19  Aligned_cols=157  Identities=20%  Similarity=0.255  Sum_probs=113.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      +||+++|++|+|||||++++.++.+ ..+.++...... ....  ....+.+||+||++.+.......++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            5899999999999999999999886 334444432222 1222  45679999999999888888888899999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH--------HHhhhCcccc-CCccEEEEEeeccCCC
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE--------VADKLELYSL-GQRRWSIQSCSAISGQ  164 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~Sa~~~~  164 (181)
                      +++++++......+...+.... .+.|+++|+||+|+.+......        +......... .....+++++||++|+
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            9999999887664444333322 4799999999999876443211        0011111111 1123389999999999


Q ss_pred             CHHHHHHHHHh
Q 030233          165 GLYEGLDWLSN  175 (181)
Q Consensus       165 ~i~~l~~~i~~  175 (181)
                      |++++|+++.+
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00876 Ras Ras family

Probab=99.96  E-value=1.6e-28  Score=163.53  Aligned_cols=154  Identities=23%  Similarity=0.307  Sum_probs=120.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      ||+++|++|+|||||++++.+..+. ...++.+.... .+...  ...+.+||+||++.+...+..+++.+|++++|+|+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            6899999999999999999987643 33444442222 23333  46789999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      ++++++.....++..+.........|+++++||+|+....  ..+.......     ..+.+++++||++|.|++++|++
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~  155 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL  155 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence            9999999999999888776544589999999999987522  2222222221     12257999999999999999999


Q ss_pred             HHhhh
Q 030233          173 LSNNI  177 (181)
Q Consensus       173 i~~~~  177 (181)
                      |.+.+
T Consensus       156 l~~~i  160 (160)
T cd00876         156 LVREI  160 (160)
T ss_pred             HHhhC
Confidence            98764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.3e-27  Score=166.69  Aligned_cols=161  Identities=23%  Similarity=0.321  Sum_probs=128.9

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .+...+|++++|++|||||||+++++.+.+ ..+.+|.+.+.....+    ....+.+||++|++.+...+..++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            455679999999999999999998877765 5677888877665443    45789999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +++|||++++.++..+..|+..+....  .+.|+++++||+|+.+.....+.....     ...++.++++||++|.|++
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~  157 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNFE  157 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999988876442  478999999999986432212111111     2234579999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|.+|++.+...
T Consensus       158 ~~f~~ia~~l~~~  170 (215)
T PTZ00132        158 KPFLWLARRLTND  170 (215)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887653

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.6e-29  Score=160.56  Aligned_cols=180  Identities=36%  Similarity=0.664  Sum_probs=158.4

Q ss_pred             CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCC--------cccccCccceeEEEEEECCeEEEEEEcCCCh
Q 030233            1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGE--------IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN   72 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   72 (181)
                      |=.+++.+++.++.+..+.++++|..++|||||+.+.-...        .....+|.|.+..++......+.+||.+|++
T Consensus         1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe   80 (197)
T KOG0076|consen    1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE   80 (197)
T ss_pred             ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence            55788999999999999999999999999999998774322        2334678899999999999999999999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc-cccCCc
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL-YSLGQR  151 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~-~~~~~~  151 (181)
                      ..+++|..+|..+|++|+++|+++++.|+.....++.++......+.|+++.+||.|+.+..+..++...++. .....+
T Consensus        81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r  160 (197)
T KOG0076|consen   81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR  160 (197)
T ss_pred             HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence            9999999999999999999999999999999999999888766679999999999999998888888887763 333556


Q ss_pred             cEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          152 RWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ..++.++||.+|+||++-.+|+...+.++
T Consensus       161 d~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            77899999999999999999999887654

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.2e-28  Score=154.01  Aligned_cols=181  Identities=49%  Similarity=0.813  Sum_probs=163.6

Q ss_pred             CcchHHHHhhhhCCC-CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233            1 MGKLISRLAKRFFPQ-CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~-~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   79 (181)
                      |+-.++.+++.++.. +..+++++|-.|+|||++..++.-++.....||++++...+.+.+.++++||.+|+...+-.|.
T Consensus         1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR   80 (182)
T KOG0072|consen    1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR   80 (182)
T ss_pred             CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence            566677777776644 8999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      -++.+.+.+|||+|.+|++.+......+..++++....+..+++++||.|........++...+.+...+.+.+.++++|
T Consensus        81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS  160 (182)
T KOG0072|consen   81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS  160 (182)
T ss_pred             HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence            99999999999999999998888888888888887777888999999999988788888888888888888889999999


Q ss_pred             ccCCCCHHHHHHHHHhhhhccC
Q 030233          160 AISGQGLYEGLDWLSNNISVKN  181 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~~  181 (181)
                      |.+|+|+++..+|+.+-+..++
T Consensus       161 A~kg~Gld~~~DWL~~~l~~~~  182 (182)
T KOG0072|consen  161 AVKGEGLDPAMDWLQRPLKSRQ  182 (182)
T ss_pred             cccccCCcHHHHHHHHHHhccC
Confidence            9999999999999999887764

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=2.5e-28  Score=166.43  Aligned_cols=161  Identities=21%  Similarity=0.253  Sum_probs=132.7

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +.+++.++|.+|+|||+|..++..+.+. .+.||++..+.. +..  +...+.|+||+|++.+..+...+++..|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            4689999999999999999999999865 468888754443 333  557889999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      |+++++.||+.+..++..+.+......+|+++||||+|+...   .++........+....++|+|+||+.+.+++++|.
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~  158 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY  158 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence            999999999999999999977666677999999999999762   22222222222455666799999999999999999


Q ss_pred             HHHhhhhc
Q 030233          172 WLSNNISV  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      .+.+.+..
T Consensus       159 ~L~r~~~~  166 (196)
T KOG0395|consen  159 ELVREIRL  166 (196)
T ss_pred             HHHHHHHh
Confidence            99987764

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=4.7e-30  Score=158.56  Aligned_cols=156  Identities=21%  Similarity=0.312  Sum_probs=122.9

Q ss_pred             EEEcCCCCChHHHHHhhhcCCccc--ccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           21 LMVGLDASGKTTILYKMKLGEIVT--TTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        21 ~~~G~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      +++|++++|||+|+-|+..+.+..  -.+|.|++++..-+    ...++++|||+|++++++....+++++|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            478999999999999998887543  34667766655333    457899999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      .|+.||++.+.|+..+-+. ....+.+.+++||||+..+   +.+........+...+++|+++||++|.|++..|-.|+
T Consensus        81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia  156 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA  156 (192)
T ss_pred             ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchh---hccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence            9999999999999888543 2246788999999998542   11222222222234556899999999999999999999


Q ss_pred             hhhhcc
Q 030233          175 NNISVK  180 (181)
Q Consensus       175 ~~~~~~  180 (181)
                      +.+.+.
T Consensus       157 ~~l~k~  162 (192)
T KOG0083|consen  157 EELKKL  162 (192)
T ss_pred             HHHHHh
Confidence            887654

>cd04129 Rho2 Rho2 subfamily

Probab=99.95  E-value=8.6e-28  Score=164.13  Aligned_cols=160  Identities=20%  Similarity=0.259  Sum_probs=113.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +.|++++|++|+|||||++++..+.+. .+.++...... .+...  ...+.+||++|++.+....+..+..++++++||
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            358999999999999999999877654 33444433322 23333  356899999999888877777888999999999


Q ss_pred             ECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH-------HHHhhhCccccCCc-cEEEEEeeccCC
Q 030233           93 DSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMPTA-------EVADKLELYSLGQR-RWSIQSCSAISG  163 (181)
Q Consensus        93 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~Sa~~~  163 (181)
                      |++++++++.+.. |+..+....  ++.|+++|+||+|+.+.....       .+............ ..+|++|||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999875 666664432  479999999999985421100       00000000001112 237999999999


Q ss_pred             CCHHHHHHHHHhhhh
Q 030233          164 QGLYEGLDWLSNNIS  178 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~  178 (181)
                      .|++++|+++.+++.
T Consensus       159 ~~v~~~f~~l~~~~~  173 (187)
T cd04129         159 EGVDDVFEAATRAAL  173 (187)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999997654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=1.7e-26  Score=155.09  Aligned_cols=153  Identities=18%  Similarity=0.181  Sum_probs=106.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCeEEEEEEcCCChhh----H-----HHHHhhccCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNKSFCVWDVGGQNKI----R-----ALWRHYFRDT   85 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----~-----~~~~~~~~~~   85 (181)
                      .+|+++|++|+|||||++++.+..+...   ..|...........+..+.+|||||....    +     .........+
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR   80 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence            3789999999999999999998875321   12334444445556789999999997320    0     1111112336


Q ss_pred             CEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           86 LGLTFVVDSSDRERI--SEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        86 d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      |++++|+|++++.++  +....|+..+....  .+.|+++|+||+|+.+.....+....     .....++++++||++|
T Consensus        81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~  153 (168)
T cd01897          81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEEE-----EELEGEEVLKISTLTE  153 (168)
T ss_pred             CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHHh-----hhhccCceEEEEeccc
Confidence            899999999987654  55555666654331  47999999999999764333321111     1234567999999999


Q ss_pred             CCHHHHHHHHHhhh
Q 030233          164 QGLYEGLDWLSNNI  177 (181)
Q Consensus       164 ~~i~~l~~~i~~~~  177 (181)
                      +|++++|+++.+.+
T Consensus       154 ~gi~~l~~~l~~~~  167 (168)
T cd01897         154 EGVDEVKNKACELL  167 (168)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=1e-26  Score=159.62  Aligned_cols=145  Identities=19%  Similarity=0.298  Sum_probs=108.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEE-------CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEY-------KNKSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      +||+++|++++|||||+++++++.+. .+.+|++.+..  .+.+       ....+.+|||+|++.+..++..+++.+|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            58999999999999999999998864 45677774433  3333       24679999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCC------------------CCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccc
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDN------------------ELSNAALLVFANKQDLPNV--MPTAEVADKLELYS  147 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~  147 (181)
                      +|+|||+++++|++.+..|+..+.+..                  ...++|+++|+||+|+.++  .+.+..... ....
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~-~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTA-RGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhH-hhhH
Confidence            999999999999999999998886531                  1246899999999998653  122211111 1111


Q ss_pred             cCCccEEEEEeeccCC
Q 030233          148 LGQRRWSIQSCSAISG  163 (181)
Q Consensus       148 ~~~~~~~~~~~Sa~~~  163 (181)
                      +...+.+.++.+|.++
T Consensus       160 a~~~~~~~i~~~c~~~  175 (202)
T cd04102         160 AEQGNAEEINLNCTNG  175 (202)
T ss_pred             HHhcCCceEEEecCCc
Confidence            2334556677776643

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.5e-27  Score=146.18  Aligned_cols=160  Identities=21%  Similarity=0.293  Sum_probs=128.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .-++..++|+-|+|||+|+..|...++ .+...|+|+...  .++.  ..+++++|||+|+++|++....+++.+.+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            357889999999999999999988775 455566665433  3333  77899999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+|++.++++..+..|+....... .++..+++++||.|+....+   +..+.....+.+.+..|+++||++|+|+++.|
T Consensus        90 vyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrd---v~yeeak~faeengl~fle~saktg~nvedaf  165 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRD---VTYEEAKEFAEENGLMFLEASAKTGQNVEDAF  165 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhccc---CcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence            999999999999999999876553 36788999999999865322   22222222235577789999999999999999


Q ss_pred             HHHHhhhhc
Q 030233          171 DWLSNNISV  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      -+.++++.+
T Consensus       166 le~akkiyq  174 (215)
T KOG0097|consen  166 LETAKKIYQ  174 (215)
T ss_pred             HHHHHHHHH
Confidence            888777654

>cd04171 SelB SelB subfamily

Probab=99.95  E-value=3.8e-26  Score=152.71  Aligned_cols=152  Identities=20%  Similarity=0.145  Sum_probs=103.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC---ccc---ccCccceeEEEEEEC-CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE---IVT---TTPTIGFNVEAVEYK-NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~---~~~---~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +.|+++|.+++|||||++++.+..   +..   ...|.......+.+. +..+.+|||||++++.......+..+|++++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            368999999999999999999743   221   123444444455555 7799999999999988777778889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      |+|+++.. .......+..+ ...  ...|+++++||+|+.+....    +++.+.+...  .....+++++||++|+|+
T Consensus        81 V~d~~~~~-~~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v  154 (164)
T cd04171          81 VVAADEGI-MPQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGI  154 (164)
T ss_pred             EEECCCCc-cHhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCH
Confidence            99997621 11111222211 211  23489999999998753221    1222222111  113568999999999999


Q ss_pred             HHHHHHHHh
Q 030233          167 YEGLDWLSN  175 (181)
Q Consensus       167 ~~l~~~i~~  175 (181)
                      +++++.+.+
T Consensus       155 ~~l~~~l~~  163 (164)
T cd04171         155 EELKEYLDE  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=6.8e-26  Score=153.72  Aligned_cols=151  Identities=17%  Similarity=0.192  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--cc------cccC------ccceeEE----EEE-----ECCeEEEEEEcCCChhhH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IV------TTTP------TIGFNVE----AVE-----YKNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~------~~~~------~~~~~~~----~~~-----~~~~~~~i~d~~g~~~~~   75 (181)
                      +|+++|++++|||||++++++..  +.      .+.+      +.+.+..    .+.     ..+..+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            58999999999999999998732  11      1111      1222221    121     246778999999999999


Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhhCccccCCcc
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA---EVADKLELYSLGQRR  152 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~  152 (181)
                      ..+..+++.+|++++|+|+++..+......|... ..    .++|+++|+||+|+.+....+   ++.+...     ...
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-----~~~  151 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLA-LE----NNLEIIPVINKIDLPSADPERVKQQIEDVLG-----LDP  151 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC-----CCc
Confidence            9999999999999999999987666555544432 22    368999999999986532221   2222221     122


Q ss_pred             EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          153 WSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ..++++||++|+|++++|+++.+.+..
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (179)
T cd01890         152 SEAILVSAKTGLGVEDLLEAIVERIPP  178 (179)
T ss_pred             ccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence            358999999999999999999987653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1e-25  Score=151.59  Aligned_cols=156  Identities=24%  Similarity=0.239  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc--c-ccCccceeEEEEEECCe-EEEEEEcCCChh-------hHHHHHhhccCCCE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV--T-TTPTIGFNVEAVEYKNK-SFCVWDVGGQNK-------IRALWRHYFRDTLG   87 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~-~~~i~d~~g~~~-------~~~~~~~~~~~~d~   87 (181)
                      +|+++|.+|+|||||+|++.+....  . ...|.......+...+. .+.+|||||...       +...+...+..+|+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   81 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL   81 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence            5899999999999999999876531  1 11222223333445555 899999999531       11122223456999


Q ss_pred             EEEEEECCCc-ccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           88 LTFVVDSSDR-ERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        88 ii~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +++|+|++++ ++++....|...+.... ...+.|+++|+||+|+.+.............   .....+++++||++|.|
T Consensus        82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence            9999999998 78888888877765432 1246899999999998664433332222111   11245799999999999


Q ss_pred             HHHHHHHHHhhh
Q 030233          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 i~~l~~~i~~~~  177 (181)
                      ++++|+++.+.+
T Consensus       159 i~~l~~~i~~~~  170 (170)
T cd01898         159 LDELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998653

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01878 HflX HflX subfamily

Probab=99.94  E-value=1.3e-25  Score=155.40  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=108.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECCe-EEEEEEcCCChh---------hHHHHHhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNK-SFCVWDVGGQNK---------IRALWRHYF   82 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~i~d~~g~~~---------~~~~~~~~~   82 (181)
                      ..++|+++|++|||||||++++++..+..   ..+|.......+.+.+. .+.+|||||..+         +...+ ..+
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~  118 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEV  118 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence            35799999999999999999999876321   23344444444555444 899999999622         22222 235


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      ..+|++++|+|++++.++.....+...+.. ....+.|+++|+||+|+.+.....   ..     ......+++++||++
T Consensus       119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~~  189 (204)
T cd01878         119 AEADLLLHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAKT  189 (204)
T ss_pred             hcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcCC
Confidence            689999999999988877766555544432 223568999999999987643322   11     122345799999999


Q ss_pred             CCCHHHHHHHHHhhh
Q 030233          163 GQGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (181)
                      |.|+++++++|.+.+
T Consensus       190 ~~gi~~l~~~L~~~~  204 (204)
T cd01878         190 GEGLDELLEAIEELL  204 (204)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999998754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.94  E-value=2.1e-25  Score=171.29  Aligned_cols=159  Identities=17%  Similarity=0.149  Sum_probs=111.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCC----------hhhHHHH-Hh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQ----------NKIRALW-RH   80 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~----------~~~~~~~-~~   80 (181)
                      ..++|+++|.+++|||||+|++++.......+..+++    ...+.+.+..+.+|||||.          +.+.... ..
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~  289 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA  289 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence            3589999999999999999999988743333333332    2345567888999999994          3333332 34


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +++.+|++++|+|++++.+++... ++..+..    .+.|+|+|+||+|+.+......+..............+++++||
T Consensus       290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA  364 (472)
T PRK03003        290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA  364 (472)
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence            678999999999999887776653 3333332    47899999999999753322222222221111223457899999


Q ss_pred             cCCCCHHHHHHHHHhhhhc
Q 030233          161 ISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++|.|++++|+.+.+.+.+
T Consensus       365 k~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        365 KTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887654

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.94  E-value=3.1e-26  Score=142.84  Aligned_cols=166  Identities=42%  Similarity=0.737  Sum_probs=152.4

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECC-eEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN-KSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+.++++|+++|-.++|||||+..+.+.+.....||.|++...+.+.+ ..+.+||.+|+...+..|..+|.+.|++|||
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV   92 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV   92 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence            457889999999999999999999999999999999999999999955 9999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +|.+++..|+++-+.+-++++......+|+.+..||-|+.-....+++...+.+.....+.+.+-+|||.+++|+.+-.+
T Consensus        93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~  172 (185)
T KOG0074|consen   93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSD  172 (185)
T ss_pred             EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence            99999999999888888888876667899999999999998888999999888887788889999999999999999999


Q ss_pred             HHHhhhh
Q 030233          172 WLSNNIS  178 (181)
Q Consensus       172 ~i~~~~~  178 (181)
                      |++....
T Consensus       173 wv~sn~~  179 (185)
T KOG0074|consen  173 WVQSNPE  179 (185)
T ss_pred             hhhcCCC
Confidence            9887654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.94  E-value=2.6e-25  Score=149.27  Aligned_cols=154  Identities=20%  Similarity=0.154  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEEC---CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYK---NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      .|+++|++|+|||||++++.++.+...   ..+.......+...   +..+.+|||||++.+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999998775443   22333333334433   678999999999999988888899999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---ccc--cCCccEEEEEeeccCCCCHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---LYS--LGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      |+++...-+ ....+..+ ..   .+.|+++|+||+|+.... .+.+.....   ...  ......+++++||++|+|++
T Consensus        82 d~~~~~~~~-~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (168)
T cd01887          82 AADDGVMPQ-TIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID  155 (168)
T ss_pred             ECCCCccHH-HHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence            998743221 11222222 22   468999999999986432 222222221   110  01234689999999999999


Q ss_pred             HHHHHHHhhhh
Q 030233          168 EGLDWLSNNIS  178 (181)
Q Consensus       168 ~l~~~i~~~~~  178 (181)
                      ++++++.+...
T Consensus       156 ~l~~~l~~~~~  166 (168)
T cd01887         156 DLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHHhhh
Confidence            99999988654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.94  E-value=1.1e-26  Score=155.34  Aligned_cols=164  Identities=21%  Similarity=0.240  Sum_probs=123.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE-EEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA-VEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      +..+|+.++|+..+|||+++-.+..+.|+. +.||...++.. +..   ..+.+.+|||+|+++|..+++..|.++|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            356899999999999999999998888765 56666533322 223   4578999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhh--------hCcccc-CCccEEEEEee
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADK--------LELYSL-GQRRWSIQSCS  159 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~--------~~~~~~-~~~~~~~~~~S  159 (181)
                      +||++.+++||.++...|..-+.+.. ++.|+|+||+|.|+.+.... +.+...        .....+ ......|+|||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            99999999999997764444444444 78999999999999853311 111111        000011 12336799999


Q ss_pred             ccCCCCHHHHHHHHHhhhhc
Q 030233          160 AISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~  179 (181)
                      |++..|++++|+.....+..
T Consensus       161 a~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhc
Confidence            99999999999988876643

>TIGR00436 era GTP-binding protein Era

Probab=99.94  E-value=2.7e-25  Score=159.67  Aligned_cols=153  Identities=17%  Similarity=0.107  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE----EEEECCeEEEEEEcCCChhh--------HHHHHhhccCCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE----AVEYKNKSFCVWDVGGQNKI--------RALWRHYFRDTL   86 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~d~~g~~~~--------~~~~~~~~~~~d   86 (181)
                      +|+++|.+|+|||||+|++++......++.++++..    .....+.++.+|||||....        .......+..+|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            589999999999999999999875544443333322    22335678999999996432        122445678999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ++++|+|+++..+..   .++...+..   .+.|+++|+||+|+.+..........+..   .....+++++||++|.|+
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~---~~~~~~v~~iSA~~g~gi  152 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI---LEDFKDIVPISALTGDNT  152 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh---hcCCCceEEEecCCCCCH
Confidence            999999999876654   233333333   47899999999998642221111111111   011126999999999999


Q ss_pred             HHHHHHHHhhhhcc
Q 030233          167 YEGLDWLSNNISVK  180 (181)
Q Consensus       167 ~~l~~~i~~~~~~~  180 (181)
                      +++++++.+.+...
T Consensus       153 ~~L~~~l~~~l~~~  166 (270)
T TIGR00436       153 SFLAAFIEVHLPEG  166 (270)
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999999887653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=1.2e-24  Score=160.38  Aligned_cols=156  Identities=16%  Similarity=0.221  Sum_probs=109.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCChh-h-------HHHHHhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQNK-I-------RALWRHYF   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~~~-~-------~~~~~~~~   82 (181)
                      .+..+|+++|.+|+|||||+|++++..+....+..++    ....+...+.++.+|||||... +       .......+
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            4557999999999999999999999876544443333    3344566788999999999742 1       12222357


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      ..+|++++|+|..+  ++.....++...+..   .+.|.++|+||+|+.+. ...++.+....   ......++++||++
T Consensus       130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAkt  200 (339)
T PRK15494        130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALS  200 (339)
T ss_pred             hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccC
Confidence            78999999999754  455554444433333   24577889999998653 23333333321   11235799999999


Q ss_pred             CCCHHHHHHHHHhhhhc
Q 030233          163 GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (181)
                      |.|+++++++|.+.+.+
T Consensus       201 g~gv~eL~~~L~~~l~~  217 (339)
T PRK15494        201 GKNIDGLLEYITSKAKI  217 (339)
T ss_pred             ccCHHHHHHHHHHhCCC
Confidence            99999999999988765

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.93  E-value=1.6e-24  Score=147.96  Aligned_cols=156  Identities=20%  Similarity=0.190  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccccc-------------------CccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTT-------------------PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   79 (181)
                      +|+++|.+|+|||||+|++++.......                   .+.......+......+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            4899999999999999999887643321                   222333444556788999999999999988898


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH----HHhhhCcccc-------
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE----VADKLELYSL-------  148 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~----~~~~~~~~~~-------  148 (181)
                      .++..+|++++|+|+.++.+.. ...++.....    .+.|+++++||+|+..+.....    +.+.......       
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            9999999999999998765432 2233333322    4799999999999986433322    2233222111       


Q ss_pred             --CCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          149 --GQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       149 --~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                        .....+++++||++|.|++++++++.+.+.+
T Consensus       156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~  188 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP  188 (189)
T ss_pred             cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence              1246789999999999999999999998754

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.93  E-value=7.4e-25  Score=160.57  Aligned_cols=158  Identities=22%  Similarity=0.215  Sum_probs=112.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEE-CCeEEEEEEcCCChh-------hHHHHHhhccCCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEY-KNKSFCVWDVGGQNK-------IRALWRHYFRDTL   86 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~i~d~~g~~~-------~~~~~~~~~~~~d   86 (181)
                      ..|+++|.|++|||||+|++.+....  .+ ..|.......+.+ ....+.+||+||..+       +...+...++.++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~  238 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  238 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence            46999999999999999999875422  11 2344444455666 456899999999532       2223344556799


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHHH-HHhhhCccccCCccEEEEEeeccCCC
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTAE-VADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      ++++|+|++++++++....|...+.... ...+.|+++|+||+|+.+...... .....    ....+.+++++||++++
T Consensus       239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~  314 (335)
T PRK12299        239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGE  314 (335)
T ss_pred             EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCC
Confidence            9999999998888888888877775432 224789999999999875432221 11111    11223579999999999


Q ss_pred             CHHHHHHHHHhhhhc
Q 030233          165 GLYEGLDWLSNNISV  179 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (181)
                      |+++++++|.+.+.+
T Consensus       315 GI~eL~~~L~~~l~~  329 (335)
T PRK12299        315 GLDELLRALWELLEE  329 (335)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988764

>PRK04213 GTP-binding protein; Provisional

Probab=99.93  E-value=2.2e-25  Score=153.91  Aligned_cols=161  Identities=23%  Similarity=0.283  Sum_probs=103.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCC-----------ChhhHHHHHhhcc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGG-----------QNKIRALWRHYFR   83 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~~~   83 (181)
                      ...++|+++|.+|+|||||+|++++..+. ....++++..........+.+|||||           .+.++..+..++.
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   85 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE   85 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999987743 22233444333333223789999999           4566666655554


Q ss_pred             ----CCCEEEEEEECCCcccH-H--------HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCcc-c
Q 030233           84 ----DTLGLTFVVDSSDRERI-S--------EARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELY-S  147 (181)
Q Consensus        84 ----~~d~ii~v~d~~~~~s~-~--------~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~-~  147 (181)
                          .++++++|+|......+ .        .....+...+..   .++|+++|+||+|+.+..  ..+++.+.+... .
T Consensus        86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  162 (201)
T PRK04213         86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP  162 (201)
T ss_pred             hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc
Confidence                45788888887543221 0        011112222222   478999999999986533  223333333321 0


Q ss_pred             cCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          148 LGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ......+++++||++| |+++++++|.+.+.+.
T Consensus       163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        163 WRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             ccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            0111236899999999 9999999999987653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.93  E-value=1.2e-24  Score=167.08  Aligned_cols=151  Identities=21%  Similarity=0.275  Sum_probs=108.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE----EEEECCeEEEEEEcCCCh--------hhHHHHHhhccC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE----AVEYKNKSFCVWDVGGQN--------KIRALWRHYFRD   84 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~   84 (181)
                      ..+|+++|.+|+|||||+|++++.......++++++..    ...+.+..+.+|||||.+        .+...+..+++.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~  117 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT  117 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence            36899999999999999999998775544555555433    344577889999999965        244556678889


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      +|++++|+|+++..+...  ..+...++.   .+.|+++|+||+|+.....  +.......   +..  .++++||++|.
T Consensus       118 aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~---g~~--~~~~iSA~~g~  185 (472)
T PRK03003        118 ADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL---GLG--EPHPVSALHGR  185 (472)
T ss_pred             CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc---CCC--CeEEEEcCCCC
Confidence            999999999998765432  223333333   4799999999999864321  11111111   111  25799999999


Q ss_pred             CHHHHHHHHHhhhhc
Q 030233          165 GLYEGLDWLSNNISV  179 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (181)
                      |++++|+++.+.+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999988754

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=3.6e-25  Score=144.81  Aligned_cols=134  Identities=22%  Similarity=0.256  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCCh-----hhHHHHHhhccCCCEEEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN-----KIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      ||+++|++|+|||||++++.+..+. +.+|.+..     +..   .+|||||..     .+..... .++++|++++|+|
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d   71 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-----YND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS   71 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-----EcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence            7999999999999999999987652 33343322     222   689999972     3344433 5789999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      ++++.++.. ..|.. ..      ..|+++|+||+|+.+. ...++..+....    ....+++++||++|+|++++|++
T Consensus        72 ~~~~~s~~~-~~~~~-~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~~  139 (142)
T TIGR02528        72 ATDPESRFP-PGFAS-IF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVDY  139 (142)
T ss_pred             CCCCCcCCC-hhHHH-hc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHHH
Confidence            999988754 22322 11      2499999999998652 222322222211    11236999999999999999998


Q ss_pred             HH
Q 030233          173 LS  174 (181)
Q Consensus       173 i~  174 (181)
                      +.
T Consensus       140 l~  141 (142)
T TIGR02528       140 LN  141 (142)
T ss_pred             Hh
Confidence            85

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.93  E-value=3.4e-24  Score=142.19  Aligned_cols=143  Identities=20%  Similarity=0.164  Sum_probs=105.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccc----eeEEEEEECCeEEEEEEcCCChhhHH--------HHHhhccCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG----FNVEAVEYKNKSFCVWDVGGQNKIRA--------LWRHYFRDT   85 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~   85 (181)
                      ++|+++|++|+|||||++++.+.......+..+    .....+...+..+.+|||||...+..        .....+..+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            589999999999999999999887433222222    22334555778999999999654321        133456789


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      |++++|+|++++.+......+..       ..+.|+++|+||+|+......          .......+++++||+++.|
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~  144 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG  144 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence            99999999998776665543322       257999999999998764332          1123455799999999999


Q ss_pred             HHHHHHHHHhhh
Q 030233          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 i~~l~~~i~~~~  177 (181)
                      +++++++|.+.+
T Consensus       145 v~~l~~~l~~~~  156 (157)
T cd04164         145 LDELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=5.6e-24  Score=141.02  Aligned_cols=153  Identities=24%  Similarity=0.302  Sum_probs=113.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ++||+++|.+|+|||||++++.+..++ .+.++.+.+...  +...+  ..+.+||+||+..+...+...++.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            479999999999999999999988843 333444443333  45566  7899999999999999888888999999999


Q ss_pred             EECCCc-ccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDR-ERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|.... .++.... .+...+..... .+.|+++++||+|+......+........    ....+++++||.+|.|++++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~  155 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA  155 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence            999876 5665554 44444443322 27899999999999764433333333322    22346999999999999999


Q ss_pred             HHHHH
Q 030233          170 LDWLS  174 (181)
Q Consensus       170 ~~~i~  174 (181)
                      +++|.
T Consensus       156 ~~~l~  160 (161)
T TIGR00231       156 FKIVE  160 (161)
T ss_pred             HHHhh
Confidence            99874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PLN00023 GTP-binding protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=156.23  Aligned_cols=123  Identities=21%  Similarity=0.354  Sum_probs=102.6

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC---------------CeEEEEEEcCCCh
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK---------------NKSFCVWDVGGQN   72 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~---------------~~~~~i~d~~g~~   72 (181)
                      ..-+...+||+++|+.|||||||+++++++.+. .+.+|++.+..  .+.+.               ...+.||||+|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            345678899999999999999999999998864 45678876543  33432               3679999999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCC-----------CCCCeEEEEEeCCCCCCC
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNE-----------LSNAALLVFANKQDLPNV  133 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~D~~~~  133 (181)
                      .+..++..+++.++++|+|||++++++++.+..|+..+.....           ..++|+++|+||+|+.+.
T Consensus        95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            9999999999999999999999999999999999988875421           135899999999998653

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.93  E-value=4.2e-24  Score=157.78  Aligned_cols=150  Identities=20%  Similarity=0.188  Sum_probs=109.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc---cccCccceeEEEEEE-CCeEEEEEEcCCC---------hhhHHHHHhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV---TTTPTIGFNVEAVEY-KNKSFCVWDVGGQ---------NKIRALWRHYF   82 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~i~d~~g~---------~~~~~~~~~~~   82 (181)
                      ..++|+++|.+|+|||||+|++++....   ...+|.+.....+.+ .+..+.+|||+|.         +.+.+.. ..+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            3489999999999999999999997632   234566677777777 5679999999996         2233322 346


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      ..+|++++|+|++++.+......+...+ ......+.|+++|+||+|+.+.   +.+.....      ...+++++||++
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAkt  336 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKT  336 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccC
Confidence            7899999999999988776665443333 2222247899999999998653   22222111      112589999999


Q ss_pred             CCCHHHHHHHHHhh
Q 030233          163 GQGLYEGLDWLSNN  176 (181)
Q Consensus       163 ~~~i~~l~~~i~~~  176 (181)
                      |+|+++++++|.+.
T Consensus       337 g~GI~eL~~~I~~~  350 (351)
T TIGR03156       337 GEGLDLLLEAIAER  350 (351)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.93  E-value=1.9e-24  Score=164.84  Aligned_cols=158  Identities=22%  Similarity=0.203  Sum_probs=109.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeE----EEEEECCeEEEEEEcCCChhhH----------HH-HHh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNV----EAVEYKNKSFCVWDVGGQNKIR----------AL-WRH   80 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~d~~g~~~~~----------~~-~~~   80 (181)
                      ..++++++|.+++|||||+|++++.......+..+++.    ..+...+..+.+|||||..+..          .. ...
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~  250 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK  250 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence            35899999999999999999999877433333333332    3344577789999999964322          11 234


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhhCccccCCccEEEEEee
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP-NVMPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .++.+|++++|+|++++.+..... .+..+..    .+.|+++|+||+|+. +....+++...+..........+++++|
T Consensus       251 ~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S  325 (429)
T TIGR03594       251 AIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS  325 (429)
T ss_pred             HHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence            678899999999999776654432 2222222    368999999999997 3222334444333222233456899999


Q ss_pred             ccCCCCHHHHHHHHHhhhh
Q 030233          160 AISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~  178 (181)
                      |++|.|++++|+++.+...
T Consensus       326 A~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       326 ALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.93  E-value=2.9e-24  Score=148.19  Aligned_cols=157  Identities=27%  Similarity=0.386  Sum_probs=117.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCC-CEEEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDT-LGLTFVVD   93 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~-d~ii~v~d   93 (181)
                      +|+++|++++|||||++++.++.+....++...+...+..    .+..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999998765554444333333332    367899999999999999998999998 99999999


Q ss_pred             CCCc-ccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc------------------------
Q 030233           94 SSDR-ERISEARNELHQILSDN--ELSNAALLVFANKQDLPNVMPTAEVADKLELY------------------------  146 (181)
Q Consensus        94 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~------------------------  146 (181)
                      +.+. .++.....++..++...  ..+++|+++++||+|+....+.+.+++.+...                        
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~  161 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES  161 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence            9987 67777777776665431  22579999999999997655544333322210                        


Q ss_pred             -----------ccCCccEEEEEeeccCCC-CHHHHHHHHHh
Q 030233          147 -----------SLGQRRWSIQSCSAISGQ-GLYEGLDWLSN  175 (181)
Q Consensus       147 -----------~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~  175 (181)
                                 ......+.+.++|++.+. |++.+.+||.+
T Consensus       162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                       001247789999999876 69999999875

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01889 SelB_euk SelB subfamily

Probab=99.92  E-value=7.7e-24  Score=145.20  Aligned_cols=157  Identities=20%  Similarity=0.088  Sum_probs=105.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC----cc------cccCccceeEEEEEEC--------------CeEEEEEEcCCChh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE----IV------TTTPTIGFNVEAVEYK--------------NKSFCVWDVGGQNK   73 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~----~~------~~~~~~~~~~~~~~~~--------------~~~~~i~d~~g~~~   73 (181)
                      ++|+++|++++|||||++++++..    +.      ....|.+.....+.+.              +..+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            579999999999999999998731    11      1123444444334333              67999999999987


Q ss_pred             hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH----HHHhhhCccc--
Q 030233           74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA----EVADKLELYS--  147 (181)
Q Consensus        74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~~--  147 (181)
                      +..........+|++++|+|+.+.........+.  +...   .+.|+++++||+|+......+    ++.+.+....  
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  155 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK  155 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            6655555667789999999998644333322221  1222   257999999999987533222    2222211110  


Q ss_pred             cCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          148 LGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ....+++++++||++|+|++++++++.+++..
T Consensus       156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            12345689999999999999999999988753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=4.5e-24  Score=140.39  Aligned_cols=149  Identities=28%  Similarity=0.427  Sum_probs=113.9

Q ss_pred             EEcCCCCChHHHHHhhhcCCc-cc-ccCccceeEEEEEEC----CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           22 MVGLDASGKTTILYKMKLGEI-VT-TTPTIGFNVEAVEYK----NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        22 ~~G~~~~GKssl~~~~~~~~~-~~-~~~~~~~~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      ++|++|+|||||++++.+... .. ..++. .........    ...+.+||+||...+.......++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998876 33 33333 444444443    678999999999988888888889999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHH--hhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233           96 DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVA--DKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL  173 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  173 (181)
                      ++.++.....++..........+.|+++++||+|+..........  ....    .....+++++|+.++.|+++++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i~~~~~~l  155 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA----KELGVPYFETSAKTGENVEELFEEL  155 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH----hhcCCcEEEEecCCCCChHHHHHHH
Confidence            998888888774444344444689999999999987654444332  1111    2345689999999999999999998


Q ss_pred             Hh
Q 030233          174 SN  175 (181)
Q Consensus       174 ~~  175 (181)
                      .+
T Consensus       156 ~~  157 (157)
T cd00882         156 AE  157 (157)
T ss_pred             hC
Confidence            63

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=1.4e-23  Score=144.18  Aligned_cols=144  Identities=22%  Similarity=0.276  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhc--CCccccc-------------Cccce----eEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKL--GEIVTTT-------------PTIGF----NVEAVEYKNKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~--~~~~~~~-------------~~~~~----~~~~~~~~~~~~~i~d~~g~~~~~~~~~   79 (181)
                      +|+++|++++|||||++++++  +.+....             .+.+.    ....+......+.+|||||++++...+.
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            689999999999999999997  3332211             12222    2234556788999999999999999999


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH---HHHhhhCcc--ccCCccEE
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA---EVADKLELY--SLGQRRWS  154 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---~~~~~~~~~--~~~~~~~~  154 (181)
                      .+++.+|++++|+|+++. .+.....++.....    .++|+++|+||+|+.......   ++...+...  .....+++
T Consensus        84 ~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          84 RVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            999999999999999863 22333333443322    368999999999986533222   222221100  01223568


Q ss_pred             EEEeeccCCCCHH
Q 030233          155 IQSCSAISGQGLY  167 (181)
Q Consensus       155 ~~~~Sa~~~~~i~  167 (181)
                      ++++||++|.|+.
T Consensus       159 iv~~Sa~~g~~~~  171 (194)
T cd01891         159 VLYASAKNGWASL  171 (194)
T ss_pred             EEEeehhcccccc
Confidence            9999999997663

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.92  E-value=5e-24  Score=162.29  Aligned_cols=146  Identities=18%  Similarity=0.176  Sum_probs=108.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChhhHHH--------HHhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNKIRAL--------WRHYF   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~   82 (181)
                      ...++|+++|.+|+|||||+|++++.......+    |..+....+.+.+..+.+|||||.......        ....+
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            346899999999999999999999876432222    333344556668889999999997643321        23467


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      ..+|++++|+|++++.++.....|..       ..+.|+++|+||+|+.+.....           .....+++++||++
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt  354 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT  354 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence            88999999999998877765433322       2478999999999997533221           11234689999999


Q ss_pred             CCCHHHHHHHHHhhhh
Q 030233          163 GQGLYEGLDWLSNNIS  178 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (181)
                      |+|++++++++.+.+.
T Consensus       355 g~GI~~L~~~L~~~l~  370 (449)
T PRK05291        355 GEGIDELREAIKELAF  370 (449)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988764

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.92  E-value=3.2e-24  Score=144.97  Aligned_cols=152  Identities=20%  Similarity=0.156  Sum_probs=105.2

Q ss_pred             EEcCCCCChHHHHHhhhcCCc--ccc-cCccceeEEEEEEC-CeEEEEEEcCCChhh-------HHHHHhhccCCCEEEE
Q 030233           22 MVGLDASGKTTILYKMKLGEI--VTT-TPTIGFNVEAVEYK-NKSFCVWDVGGQNKI-------RALWRHYFRDTLGLTF   90 (181)
Q Consensus        22 ~~G~~~~GKssl~~~~~~~~~--~~~-~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~-------~~~~~~~~~~~d~ii~   90 (181)
                      ++|++|+|||||+|++.+...  ..+ ..|.......+.+. +..+.+|||||....       .......++.+|++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            589999999999999998863  111 22333334445566 889999999996321       1122345678999999


Q ss_pred             EEECCCc------ccHHHHHHHHHHHHcCCC------CCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEe
Q 030233           91 VVDSSDR------ERISEARNELHQILSDNE------LSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSC  158 (181)
Q Consensus        91 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      |+|+.++      .++.....+...+.....      ..+.|+++|+||+|+.............   ........++++
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~  157 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAEVVPI  157 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCCEEEE
Confidence            9999987      467776666666654322      1478999999999997643333321011   112334569999


Q ss_pred             eccCCCCHHHHHHHHHhh
Q 030233          159 SAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~  176 (181)
                      ||+++.|++++++++...
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PTZ00099 rab6; Provisional

Probab=99.92  E-value=1.7e-24  Score=146.08  Aligned_cols=131  Identities=20%  Similarity=0.328  Sum_probs=103.6

Q ss_pred             ccccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC
Q 030233           43 VTTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN  118 (181)
Q Consensus        43 ~~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (181)
                      ..+.||++.+...  +..  ....+.+|||||++.+...+..+++++|++|+|||++++++|+.+..|+..++.... +.
T Consensus         7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~   85 (176)
T PTZ00099          7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KD   85 (176)
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CC
Confidence            3467888866643  333  457899999999999999999999999999999999999999999999988876532 57


Q ss_pred             CeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          119 AALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       119 ~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      .|+++|+||+|+.+.  .+.++.....     ...+..|+++||++|+|++++|++|.+.+.+
T Consensus        86 ~piilVgNK~DL~~~~~v~~~e~~~~~-----~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099         86 VIIALVGNKTDLGDLRKVTYEEGMQKA-----QEYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            899999999998642  2333322221     2234478999999999999999999998865

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.92  E-value=2.3e-23  Score=157.93  Aligned_cols=149  Identities=16%  Similarity=0.149  Sum_probs=107.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChhhHHH--------HHhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNKIRAL--------WRHYF   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~~~--------~~~~~   82 (181)
                      ...++|+++|++|+|||||+|++++.......+.++++    ...+.+.+..+.+|||||...+...        ...++
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            35689999999999999999999987643333333333    3345568889999999997544322        24577


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      +.+|++++|+|++++.++...  |+..+..    .+.|+++|+||+|+.+. +.+.+.        ...+.+++++||++
T Consensus       281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vSak~  345 (442)
T TIGR00450       281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLSAKQ  345 (442)
T ss_pred             hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEEEec
Confidence            889999999999988877654  5544422    36899999999998653 222211        12234689999998


Q ss_pred             CCCHHHHHHHHHhhhhc
Q 030233          163 GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (181)
                       .|++++|+.+.+.+.+
T Consensus       346 -~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       346 -LKIKALVDLLTQKINA  361 (442)
T ss_pred             -CCHHHHHHHHHHHHHH
Confidence             6999999988887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=1.4e-23  Score=153.73  Aligned_cols=156  Identities=23%  Similarity=0.245  Sum_probs=109.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-eEEEEEEcCCChh-------hHHHHHhhccCCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-KSFCVWDVGGQNK-------IRALWRHYFRDTL   86 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~~~~d   86 (181)
                      ..|+++|.+++|||||++++.+....  .+ ..|...+...+.+.+ ..+.+||+||..+       +...+...++.++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad  237 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  237 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence            47999999999999999999976521  11 223334444455655 8999999999642       2222333445799


Q ss_pred             EEEEEEECCCc---ccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           87 GLTFVVDSSDR---ERISEARNELHQILSD-NELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        87 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      ++++|+|+++.   ++++....|...+... ....+.|+++|+||+|+.+....+++.+.+.    ...+.+++++||++
T Consensus       238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAkt  313 (329)
T TIGR02729       238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALT  313 (329)
T ss_pred             EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccC
Confidence            99999999976   5677777666655432 1234789999999999976433333333322    11235799999999


Q ss_pred             CCCHHHHHHHHHhhh
Q 030233          163 GQGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (181)
                      ++|++++++++.+.+
T Consensus       314 g~GI~eL~~~I~~~l  328 (329)
T TIGR02729       314 GEGLDELLYALAELL  328 (329)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=1.7e-23  Score=146.32  Aligned_cols=163  Identities=26%  Similarity=0.318  Sum_probs=119.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEE--C--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEY--K--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~--~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      +..++|+++|++|+|||||++++.++.+.. +.+|.+........  .  ...+.+|||+|+++++..+..++..+++++
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            345899999999999999999999998765 44555544333222  2  577999999999999999999999999999


Q ss_pred             EEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhh----------Ccc-ccCCccEEEE
Q 030233           90 FVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-VADKL----------ELY-SLGQRRWSIQ  156 (181)
Q Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~----------~~~-~~~~~~~~~~  156 (181)
                      +|+|..+..++.+. ..|...+... .....|+++++||+|+........ +....          ... ........++
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL  161 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccccee
Confidence            99999985555554 4555555443 224799999999999987543221 11110          000 0011233499


Q ss_pred             Eeecc--CCCCHHHHHHHHHhhhh
Q 030233          157 SCSAI--SGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       157 ~~Sa~--~~~~i~~l~~~i~~~~~  178 (181)
                      ++|++  ++.++.++|..+...+.
T Consensus       162 ~~s~~~~~~~~v~~~~~~~~~~~~  185 (219)
T COG1100         162 ETSAKSLTGPNVNELFKELLRKLL  185 (219)
T ss_pred             EeecccCCCcCHHHHHHHHHHHHH
Confidence            99999  99999999999988775

>cd01894 EngA1 EngA1 subfamily

Probab=99.92  E-value=1.7e-23  Score=138.89  Aligned_cols=145  Identities=20%  Similarity=0.198  Sum_probs=99.7

Q ss_pred             EEEcCCCCChHHHHHhhhcCCcccccCc----cceeEEEEEECCeEEEEEEcCCChhhHH--------HHHhhccCCCEE
Q 030233           21 LMVGLDASGKTTILYKMKLGEIVTTTPT----IGFNVEAVEYKNKSFCVWDVGGQNKIRA--------LWRHYFRDTLGL   88 (181)
Q Consensus        21 ~~~G~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~d~i   88 (181)
                      +++|.+|+|||||++++++.......+.    ...........+..+.+|||||...+..        .+...++.+|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            4799999999999999998763222222    2233344555778999999999876433        345567889999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      ++|+|..+..+...  .++...+..   .+.|+++|+||+|+.+....   .......  .  ..+++++||++|.|+++
T Consensus        81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~--~--~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSL--G--FGEPIPISAEHGRGIGD  148 (157)
T ss_pred             EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhc--C--CCCeEEEecccCCCHHH
Confidence            99999976543332  233333333   35999999999999763322   1111111  1  11589999999999999


Q ss_pred             HHHHHHhhh
Q 030233          169 GLDWLSNNI  177 (181)
Q Consensus       169 l~~~i~~~~  177 (181)
                      +++++.+.+
T Consensus       149 l~~~l~~~~  157 (157)
T cd01894         149 LLDAILELL  157 (157)
T ss_pred             HHHHHHhhC
Confidence            999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.92  E-value=1.6e-23  Score=144.03  Aligned_cols=164  Identities=16%  Similarity=0.190  Sum_probs=109.6

Q ss_pred             hhhCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCCC----------hhhHHH
Q 030233           10 KRFFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ----------NKIRAL   77 (181)
Q Consensus        10 ~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~----------~~~~~~   77 (181)
                      +...+...++|+++|.+|+|||||++++++.. .....++++.+.....+ .+..+.+|||||.          +.+...
T Consensus        17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            34455677899999999999999999999876 45556666644332212 2578999999994          334444


Q ss_pred             HHhhccC---CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEE
Q 030233           78 WRHYFRD---TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWS  154 (181)
Q Consensus        78 ~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  154 (181)
                      ...++..   ++++++|+|..++.+...  .++...+..   .+.|+++++||+|+.+....+......... .......
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~~~  170 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGDDE  170 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcCCc
Confidence            4445543   467888899876544322  222233332   368999999999987643333322222111 1111457


Q ss_pred             EEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          155 IQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++++||++|+|++++++.|.+.+.+
T Consensus       171 ~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        171 VILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999988764

>cd01895 EngA2 EngA2 subfamily

Probab=99.92  E-value=5.4e-23  Score=138.47  Aligned_cols=155  Identities=19%  Similarity=0.173  Sum_probs=103.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChhh----------H-HHHHhh
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNKI----------R-ALWRHY   81 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~-~~~~~~   81 (181)
                      .++|+++|++|+|||||++++++.......+    +.......+...+..+.+|||||....          . ......
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~   81 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA   81 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence            5789999999999999999999876322111    112222334557778999999995432          1 112235


Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEee
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      +..+|++++|+|+.++.+.... ..+..+ ..   .+.|+++++||+|+.+.  ...+.+..............+++++|
T Consensus        82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~-~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (174)
T cd01895          82 IERADVVLLVIDATEGITEQDL-RIAGLI-LE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS  156 (174)
T ss_pred             HhhcCeEEEEEeCCCCcchhHH-HHHHHH-Hh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence            6789999999999887665443 222222 22   36899999999998764  23333333332221122345799999


Q ss_pred             ccCCCCHHHHHHHHHhh
Q 030233          160 AISGQGLYEGLDWLSNN  176 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~  176 (181)
                      |++++|++++++++.+.
T Consensus       157 a~~~~~i~~~~~~l~~~  173 (174)
T cd01895         157 ALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCCCHHHHHHHHHHh
Confidence            99999999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.3e-23  Score=139.72  Aligned_cols=146  Identities=21%  Similarity=0.148  Sum_probs=101.3

Q ss_pred             EEcCCCCChHHHHHhhhcCCcc-ccc--CccceeEEEEEECCeEEEEEEcCCChhhHH------HHHhhcc--CCCEEEE
Q 030233           22 MVGLDASGKTTILYKMKLGEIV-TTT--PTIGFNVEAVEYKNKSFCVWDVGGQNKIRA------LWRHYFR--DTLGLTF   90 (181)
Q Consensus        22 ~~G~~~~GKssl~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~~d~ii~   90 (181)
                      ++|.+|+|||||++++++.... ...  .|.......+.+.+..+.+|||||...+..      .+..++.  .+|++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            5899999999999999987622 222  233344455666778999999999765442      3455554  8999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+|+.+++..   ..++..+..    .++|+++|+||+|+.+..........+.    ...+.+++++||.+|.|+++++
T Consensus        81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence            9999875442   233333322    3689999999999965432222111111    1224579999999999999999


Q ss_pred             HHHHhhhh
Q 030233          171 DWLSNNIS  178 (181)
Q Consensus       171 ~~i~~~~~  178 (181)
                      +++.+.+.
T Consensus       150 ~~l~~~~~  157 (158)
T cd01879         150 DAIAELAE  157 (158)
T ss_pred             HHHHHHhc
Confidence            99988653

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.91  E-value=9.8e-24  Score=155.65  Aligned_cols=148  Identities=26%  Similarity=0.333  Sum_probs=115.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCCh---------hhHHHHHhhccC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN---------KIRALWRHYFRD   84 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~---------~~~~~~~~~~~~   84 (181)
                      ..|+++|.|++|||||+||+++....-...++|++.+.    ..+.+..+.++||+|-+         ....+....+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            67999999999999999999999877777777776654    55678889999999944         234457778889


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      +|++++|+|..  +++...++.+..++..   .+.|+++|+||+|...   .++....+-...++    .++.+||.+|.
T Consensus        84 ADvilfvVD~~--~Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~---~e~~~~efyslG~g----~~~~ISA~Hg~  151 (444)
T COG1160          84 ADVILFVVDGR--EGITPADEEIAKILRR---SKKPVILVVNKIDNLK---AEELAYEFYSLGFG----EPVPISAEHGR  151 (444)
T ss_pred             CCEEEEEEeCC--CCCCHHHHHHHHHHHh---cCCCEEEEEEcccCch---hhhhHHHHHhcCCC----CceEeehhhcc
Confidence            99999999994  5566667777666664   5799999999999763   33322222211112    58999999999


Q ss_pred             CHHHHHHHHHhhh
Q 030233          165 GLYEGLDWLSNNI  177 (181)
Q Consensus       165 ~i~~l~~~i~~~~  177 (181)
                      |+.+|.+.+.+.+
T Consensus       152 Gi~dLld~v~~~l  164 (444)
T COG1160         152 GIGDLLDAVLELL  164 (444)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999999886

>PRK00089 era GTPase Era; Reviewed

Probab=99.91  E-value=3e-23  Score=150.90  Aligned_cols=156  Identities=20%  Similarity=0.179  Sum_probs=107.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCChhh--------HHHHHhhcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQNKI--------RALWRHYFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~~~--------~~~~~~~~~   83 (181)
                      +.-.|+++|.+|+|||||+|++++.......+.+.++...    ....+.++.++||||....        .......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            4557999999999999999999998765444433333322    2225579999999995432        223445677


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      .+|++++|+|+++.  +.....++...+..   .+.|+++|+||+|+... .........+..   ......++++||++
T Consensus        84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~  155 (292)
T PRK00089         84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISALK  155 (292)
T ss_pred             cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCCC
Confidence            89999999999873  22333444444333   46899999999999732 222222222211   11245799999999


Q ss_pred             CCCHHHHHHHHHhhhhc
Q 030233          163 GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (181)
                      |.|++++++++.+.+.+
T Consensus       156 ~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        156 GDNVDELLDVIAKYLPE  172 (292)
T ss_pred             CCCHHHHHHHHHHhCCC
Confidence            99999999999988754

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.91  E-value=2.4e-23  Score=143.79  Aligned_cols=160  Identities=15%  Similarity=0.099  Sum_probs=102.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc------ccCccceeEEEEEEC---------------------------C----
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT------TTPTIGFNVEAVEYK---------------------------N----   60 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~------~~~~~~~~~~~~~~~---------------------------~----   60 (181)
                      ++|+++|+.|+|||||+..+.+.....      ...+.......+.+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            478999999999999999997652110      111111111111110                           2    


Q ss_pred             --eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030233           61 --KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE  138 (181)
Q Consensus        61 --~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  138 (181)
                        ..+.+|||||++.+...+...+..+|++++|+|+.++.........+..+...   ...|+++++||+|+.+......
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence              68999999999999888888888999999999998632111112222222111   2357999999999875322221


Q ss_pred             HHhhhCc--cccCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          139 VADKLEL--YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       139 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ..+....  ........+++++||++|+|++++++++.+.+...
T Consensus       158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence            1111111  00112345799999999999999999999887653

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.91  E-value=7.3e-24  Score=138.45  Aligned_cols=141  Identities=19%  Similarity=0.243  Sum_probs=96.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECCeEEEEEEcCCC------hhhHHHHHhhc--cCCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKSFCVWDVGGQ------NKIRALWRHYF--RDTL   86 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~d~~g~------~~~~~~~~~~~--~~~d   86 (181)
                      ++|+++|.|++|||||+|++.|.....   ...|.......+.+.+..+.++|+||-      .........++  ...|
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D   80 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD   80 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence            589999999999999999999988221   123344445567778999999999992      11223333443  5799


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      ++++|+|+++.   +........+++.    ++|+++++||+|+...    .+.+.+.+.+        +++++.+||++
T Consensus        81 ~ii~VvDa~~l---~r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~  145 (156)
T PF02421_consen   81 LIIVVVDATNL---ERNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART  145 (156)
T ss_dssp             EEEEEEEGGGH---HHHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred             EEEEECCCCCH---HHHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence            99999999763   3333334444443    7999999999997543    2334454444        34799999999


Q ss_pred             CCCHHHHHHHH
Q 030233          163 GQGLYEGLDWL  173 (181)
Q Consensus       163 ~~~i~~l~~~i  173 (181)
                      ++|++++++.|
T Consensus       146 ~~g~~~L~~~I  156 (156)
T PF02421_consen  146 GEGIDELKDAI  156 (156)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHhhC
Confidence            99999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04163 Era Era subfamily

Probab=99.91  E-value=7.5e-23  Score=136.81  Aligned_cols=154  Identities=21%  Similarity=0.192  Sum_probs=103.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChhhH--------HHHHhhcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNKIR--------ALWRHYFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~~~~   83 (181)
                      ...+|+++|++|+|||||+|++++.......+.....    ..........+.+|||||.....        ......+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999987643332222221    11233356789999999964322        23344577


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-CCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN-VMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      .+|++++|+|+.++  +.....++...+..   .+.|+++++||+|+.. .....+....+..   .....+++++|+++
T Consensus        82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~  153 (168)
T cd04163          82 DVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALK  153 (168)
T ss_pred             hCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEecc
Confidence            89999999999876  22223333333333   2689999999999873 2223333333322   12235799999999


Q ss_pred             CCCHHHHHHHHHhhh
Q 030233          163 GQGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (181)
                      +.|++++++.|.+.+
T Consensus       154 ~~~~~~l~~~l~~~~  168 (168)
T cd04163         154 GENVDELLEEIVKYL  168 (168)
T ss_pred             CCChHHHHHHHHhhC
Confidence            999999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.91  E-value=7.5e-23  Score=163.78  Aligned_cols=159  Identities=16%  Similarity=0.094  Sum_probs=110.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCCh----------hhHHH-HHh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQN----------KIRAL-WRH   80 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~-~~~   80 (181)
                      ..++|+++|.+|+|||||+|++++.......+    |.......+.+.+..+.+|||||..          .+... ...
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~  528 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA  528 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence            35899999999999999999999887422222    2222233455678889999999942          22222 234


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      .++.+|++++|+|+++..+.+... ++..+..    .+.|+++|+||+|+.+....+.+..............+++++||
T Consensus       529 ~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA  603 (712)
T PRK09518        529 AIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA  603 (712)
T ss_pred             HhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence            568899999999999887776654 3333332    36899999999999764333333333322111223446899999


Q ss_pred             cCCCCHHHHHHHHHhhhhc
Q 030233          161 ISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++|.|++++++.+.+...+
T Consensus       604 ktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        604 KTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887654

>COG1159 Era GTPase [General function prediction only]

Probab=99.91  E-value=3.8e-23  Score=145.15  Aligned_cols=157  Identities=17%  Similarity=0.150  Sum_probs=116.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCCh--------hhHHHHHhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN--------KIRALWRHYF   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~--------~~~~~~~~~~   82 (181)
                      ++.-.|+++|.|++|||||+|+++|.+..-.++.+.++...    +..++.++.+.||||-+        .+.......+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            34557899999999999999999999977766666655544    33478999999999932        2334466777


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeecc
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      .++|++++|+|++++  +...+.++...+..   .+.|+++++||.|...... ...+...+..   ......++++||+
T Consensus        84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---~~~f~~ivpiSA~  155 (298)
T COG1159          84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---LLPFKEIVPISAL  155 (298)
T ss_pred             ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---hCCcceEEEeecc
Confidence            899999999999864  33344555554444   4689999999999877554 2333333322   2233379999999


Q ss_pred             CCCCHHHHHHHHHhhhhc
Q 030233          162 SGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (181)
                      +|.|++.+.+.+...+.+
T Consensus       156 ~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         156 KGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             ccCCHHHHHHHHHHhCCC
Confidence            999999999999988765

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.91  E-value=3e-23  Score=140.79  Aligned_cols=149  Identities=17%  Similarity=0.242  Sum_probs=97.4

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCCCh----------hhHHHH
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQN----------KIRALW   78 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~----------~~~~~~   78 (181)
                      .+.+.+.++|+++|++|+|||||+|++++.. ...+.++.+.+.....+ .+..+.+|||||..          .+....
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHH
Confidence            3445678999999999999999999999886 44455555544332211 12479999999942          233344


Q ss_pred             Hhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhCccccCCc
Q 030233           79 RHYFR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLELYSLGQR  151 (181)
Q Consensus        79 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~  151 (181)
                      ..+++   .++++++|+|++++.+....  .+...+..   .+.|+++++||+|+......    +++.+.+...   ..
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~~  163 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---AD  163 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---cC
Confidence            44544   45899999999875443333  22233332   47899999999998753322    2222222211   12


Q ss_pred             cEEEEEeeccCCCCHH
Q 030233          152 RWSIQSCSAISGQGLY  167 (181)
Q Consensus       152 ~~~~~~~Sa~~~~~i~  167 (181)
                      .++++++||++|+|++
T Consensus       164 ~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       164 DPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCceEEEECCCCCCCC
Confidence            3479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK11058 GTPase HflX; Provisional

Probab=99.91  E-value=2e-22  Score=152.07  Aligned_cols=152  Identities=17%  Similarity=0.175  Sum_probs=105.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc---cccCccceeEEEEEECCe-EEEEEEcCCChhh--HHH------HHhhccCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV---TTTPTIGFNVEAVEYKNK-SFCVWDVGGQNKI--RAL------WRHYFRDT   85 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~d~~g~~~~--~~~------~~~~~~~~   85 (181)
                      ++|+++|.+|+|||||+|++++....   ....|.......+.+.+. .+.+|||+|....  ...      ....+..+
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A  277 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA  277 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence            68999999999999999999987632   224455555556666554 8899999996321  111      22345789


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEE-EEEeeccCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWS-IQSCSAISGQ  164 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  164 (181)
                      |++++|+|++++.+......+...+ ......+.|+++|+||+|+.+... ...... .      .+.+ ++.+||++|+
T Consensus       278 DlIL~VvDaS~~~~~e~l~~v~~iL-~el~~~~~pvIiV~NKiDL~~~~~-~~~~~~-~------~~~~~~v~ISAktG~  348 (426)
T PRK11058        278 TLLLHVVDAADVRVQENIEAVNTVL-EEIDAHEIPTLLVMNKIDMLDDFE-PRIDRD-E------ENKPIRVWLSAQTGA  348 (426)
T ss_pred             CEEEEEEeCCCccHHHHHHHHHHHH-HHhccCCCCEEEEEEcccCCCchh-HHHHHH-h------cCCCceEEEeCCCCC
Confidence            9999999999987776654333222 211224789999999999864311 111111 0      1112 5889999999


Q ss_pred             CHHHHHHHHHhhhh
Q 030233          165 GLYEGLDWLSNNIS  178 (181)
Q Consensus       165 ~i~~l~~~i~~~~~  178 (181)
                      |++++++++.+.+.
T Consensus       349 GIdeL~e~I~~~l~  362 (426)
T PRK11058        349 GIPLLFQALTERLS  362 (426)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998874

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.1e-22  Score=155.48  Aligned_cols=158  Identities=18%  Similarity=0.199  Sum_probs=109.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE----EEEECCeEEEEEEcCCChh----------hHHH-HHh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE----AVEYKNKSFCVWDVGGQNK----------IRAL-WRH   80 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~d~~g~~~----------~~~~-~~~   80 (181)
                      ..++|+++|.+++|||||+|++++.......+..+++..    .+...+..+.+|||||...          +... ...
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~  251 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK  251 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence            468999999999999999999998764333333444333    2345778899999999532          1111 234


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +++.+|++++|+|++++.+.+... .+..+ ..   .+.|+++++||+|+.+....+++...+..........+++++||
T Consensus       252 ~~~~ad~~ilViD~~~~~~~~~~~-i~~~~-~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA  326 (435)
T PRK00093        252 AIERADVVLLVIDATEGITEQDLR-IAGLA-LE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA  326 (435)
T ss_pred             HHHHCCEEEEEEeCCCCCCHHHHH-HHHHH-HH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence            677899999999999776554432 22222 22   36899999999999753333444444332222334568999999


Q ss_pred             cCCCCHHHHHHHHHhhhh
Q 030233          161 ISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~  178 (181)
                      ++|.|++++++.+.+...
T Consensus       327 ~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        327 LTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999876543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.91  E-value=7.1e-23  Score=136.05  Aligned_cols=142  Identities=19%  Similarity=0.193  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCC----hhhHHHHHhhccCCCEEEEEEEC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQ----NKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      +|+++|.+++|||||+|++.+.... ..++.++     .+...  .+|||||.    .++.......+..+|++++|+|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~   74 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA   74 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc-CccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence            6999999999999999998865421 1222222     22221  37999996    22222223457889999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      ++.+++.  ..++..+  .   .+.|+++++||+|+.+ ...+.+.+.....   ....+++++||++|+|++++|+++.
T Consensus        75 ~~~~s~~--~~~~~~~--~---~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~  143 (158)
T PRK15467         75 NDPESRL--PAGLLDI--G---VSKRQIAVISKTDMPD-ADVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLA  143 (158)
T ss_pred             CCccccc--CHHHHhc--c---CCCCeEEEEEccccCc-ccHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHH
Confidence            9876652  2344332  1   3578999999999854 3344433332211   1124899999999999999999998


Q ss_pred             hhhhc
Q 030233          175 NNISV  179 (181)
Q Consensus       175 ~~~~~  179 (181)
                      +.+.+
T Consensus       144 ~~~~~  148 (158)
T PRK15467        144 SLTKQ  148 (158)
T ss_pred             Hhchh
Confidence            87754

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.90  E-value=1.1e-22  Score=139.04  Aligned_cols=157  Identities=21%  Similarity=0.218  Sum_probs=113.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc--c-------------------cccCccceeEEEEE--ECCeEEEEEEcCCCh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI--V-------------------TTTPTIGFNVEAVE--YKNKSFCVWDVGGQN   72 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~--~-------------------~~~~~~~~~~~~~~--~~~~~~~i~d~~g~~   72 (181)
                      +..+|+++|+.++|||||+.++....-  .                   ....|.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            457899999999999999999985331  0                   12345556666677  789999999999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC-----ccc
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE-----LYS  147 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~-----~~~  147 (181)
                      +|.......+..+|++|+|+|+.+.-.- ...+.+..+..    .++|+++++||+|+.. ...++..+...     ...
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred             ceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence            9999988999999999999999865222 22333333333    3788999999999882 22222222211     111


Q ss_pred             cCC-ccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          148 LGQ-RRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       148 ~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ... ...+++++||.+|.|+++|++.+.+.++
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            121 3689999999999999999999998775

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.90  E-value=2.3e-25  Score=144.45  Aligned_cols=160  Identities=17%  Similarity=0.252  Sum_probs=128.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE----EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA----VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .-++++++|..++||||++.++|.+-|. .+..|+|++...    +..++....+||++|++++..+...+++++++.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            4589999999999999999999988754 466677755432    33367788899999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      ||+.+|+.||+...+|+.++....  .++|.++|-||+|+.+...   +...+....++..+..++.+|++...|+..+|
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~---~~~~evE~lak~l~~RlyRtSvked~NV~~vF  173 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQ---MDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF  173 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhh---cchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence            999999999999999999987664  5899999999999976322   11111111123344468999999999999999


Q ss_pred             HHHHhhhhcc
Q 030233          171 DWLSNNISVK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      .+|++++.++
T Consensus       174 ~YLaeK~~q~  183 (246)
T KOG4252|consen  174 AYLAEKLTQQ  183 (246)
T ss_pred             HHHHHHHHHH
Confidence            9999987653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=8.9e-23  Score=155.72  Aligned_cols=149  Identities=22%  Similarity=0.248  Sum_probs=106.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCC--------hhhHHHHHhhccCCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQ--------NKIRALWRHYFRDTL   86 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~~~~~~~d   86 (181)
                      +|+++|.+|+|||||+|++++.......+.+++    ....+.+.+..+.+|||||.        +.+......+++.+|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            489999999999999999998774333333333    34455668889999999995        445566777889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ++++|+|+.+..+  .....+...++.   .+.|+++|+||+|+......  ..+....     ...+++++||.+|.|+
T Consensus        81 ~vl~vvD~~~~~~--~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l-----g~~~~~~vSa~~g~gv  148 (429)
T TIGR03594        81 VILFVVDGREGLT--PEDEEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL-----GFGEPIPISAEHGRGI  148 (429)
T ss_pred             EEEEEEeCCCCCC--HHHHHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc-----CCCCeEEEeCCcCCCh
Confidence            9999999976432  222333333333   46899999999998653321  1111111     1125899999999999


Q ss_pred             HHHHHHHHhhhhc
Q 030233          167 YEGLDWLSNNISV  179 (181)
Q Consensus       167 ~~l~~~i~~~~~~  179 (181)
                      +++++++.+.+.+
T Consensus       149 ~~ll~~i~~~l~~  161 (429)
T TIGR03594       149 GDLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.90  E-value=2e-22  Score=161.35  Aligned_cols=152  Identities=21%  Similarity=0.249  Sum_probs=108.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE----EECCeEEEEEEcCCChh--------hHHHHHhhcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV----EYKNKSFCVWDVGGQNK--------IRALWRHYFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~d~~g~~~--------~~~~~~~~~~   83 (181)
                      ...+|+++|.+++|||||+|++++.......+++|++....    .+.+..+.+|||||.+.        +......+++
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            34689999999999999999999887555555666655543    34678999999999652        4455667788


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      .+|++++|+|+.+.  +......+...++.   .+.|+++|+||+|+....  .........   +..  ..+++||++|
T Consensus       354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l---g~~--~~~~iSA~~g  421 (712)
T PRK09518        354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL---GLG--EPYPISAMHG  421 (712)
T ss_pred             hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc---CCC--CeEEEECCCC
Confidence            99999999999753  33333333333443   579999999999986432  122222211   111  2578999999


Q ss_pred             CCHHHHHHHHHhhhhc
Q 030233          164 QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (181)
                      .|++++++++.+.+.+
T Consensus       422 ~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        422 RGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCchHHHHHHHHhccc
Confidence            9999999999987754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2e-22  Score=153.15  Aligned_cols=157  Identities=24%  Similarity=0.271  Sum_probs=106.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc--c-ccCccceeEEEEEECCeEEEEEEcCCChh----hHH---HHHhhccCCCE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV--T-TTPTIGFNVEAVEYKNKSFCVWDVGGQNK----IRA---LWRHYFRDTLG   87 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~---~~~~~~~~~d~   87 (181)
                      .+|+++|.|++|||||+|++.+....  . ...|...+...+.+.+..+.+||+||...    ...   .....++.+++
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv  239 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV  239 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence            47999999999999999999876532  2 12344455566777888999999999421    111   22334567999


Q ss_pred             EEEEEECCCc----ccHHHHHHHHHHHHcCC----------CCCCCeEEEEEeCCCCCCCCCHHH-HHhhhCccccCCcc
Q 030233           88 LTFVVDSSDR----ERISEARNELHQILSDN----------ELSNAALLVFANKQDLPNVMPTAE-VADKLELYSLGQRR  152 (181)
Q Consensus        88 ii~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~  152 (181)
                      +++|+|+++.    +.+.....+...+....          .....|+++|+||+|+.+.....+ +...+     ...+
T Consensus       240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g  314 (500)
T PRK12296        240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARG  314 (500)
T ss_pred             EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcC
Confidence            9999999752    34444443333332211          234689999999999865322221 22222     1234


Q ss_pred             EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          153 WSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++++++||++++|+++++++|.+.+..
T Consensus       315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        315 WPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            689999999999999999999887754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=3.7e-22  Score=155.59  Aligned_cols=156  Identities=20%  Similarity=0.224  Sum_probs=109.5

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCe-EEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNK-SFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ..+..+|+++|++++|||||++++.+..+...   ..|.......+.+.+. .+.+|||||++.|..++...+..+|+++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            44678999999999999999999988765432   1233333344555444 8999999999999999998999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc--C--CccEEEEEeeccCCCC
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL--G--QRRWSIQSCSAISGQG  165 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~~  165 (181)
                      +|+|+++... ....+.+... ..   .++|+++++||+|+.+. ..+.+...+.....  .  ....+++++||++|+|
T Consensus       164 LVVda~dgv~-~qT~e~i~~~-~~---~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       164 LVVAADDGVM-PQTIEAISHA-KA---ANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEEECCCCCC-HhHHHHHHHH-HH---cCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999976321 1222222222 11   47899999999998642 33333333321110  0  1235799999999999


Q ss_pred             HHHHHHHHHh
Q 030233          166 LYEGLDWLSN  175 (181)
Q Consensus       166 i~~l~~~i~~  175 (181)
                      ++++++++..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=1.8e-22  Score=149.02  Aligned_cols=157  Identities=20%  Similarity=0.239  Sum_probs=120.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCCh----------hhHHH-HHhh
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN----------KIRAL-WRHY   81 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~----------~~~~~-~~~~   81 (181)
                      .++|+++|.|++|||||+|++++.+-.-.++..|++...    +++.+..+.++||+|-.          .|... ....
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a  257 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA  257 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence            599999999999999999999999876666666766654    44579999999999943          22222 4456


Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEee
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      +..++++++|+|++.+  +.+.+..+..+...   .+.++++|+||+|+.+.  ...++..+.+..........+++.+|
T Consensus       258 I~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS  332 (444)
T COG1160         258 IERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS  332 (444)
T ss_pred             HhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence            6789999999999754  55666666665555   58999999999999775  44455555554444345566899999


Q ss_pred             ccCCCCHHHHHHHHHhhhh
Q 030233          160 AISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~  178 (181)
                      |++|.+++++|+.+.+...
T Consensus       333 A~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         333 ALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             ecCCCChHHHHHHHHHHHH
Confidence            9999999999999877543

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=4.2e-22  Score=155.88  Aligned_cols=154  Identities=16%  Similarity=0.208  Sum_probs=108.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC-------cc-cccC------ccceeEE----EEEE-----CCeEEEEEEcCCChhhH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE-------IV-TTTP------TIGFNVE----AVEY-----KNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~-------~~-~~~~------~~~~~~~----~~~~-----~~~~~~i~d~~g~~~~~   75 (181)
                      +++++|+.++|||||+++++...       +. .+.+      ..|++..    .+.+     ....+.+|||||+.+|.
T Consensus         5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~   84 (595)
T TIGR01393         5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS   84 (595)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence            68999999999999999998642       11 1111      1233322    2333     12789999999999999


Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEE
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSI  155 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (181)
                      ..+..++..+|++++|+|+++..+.+....|.... .    .++|+++|+||+|+.+.. .+.....+... .+.....+
T Consensus        85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-lg~~~~~v  157 (595)
T TIGR01393        85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-IGLDASEA  157 (595)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-hCCCcceE
Confidence            99999999999999999999876666655554332 2    368999999999986532 22222211110 11112358


Q ss_pred             EEeeccCCCCHHHHHHHHHhhhhc
Q 030233          156 QSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +++||++|.|++++|++|.+.+..
T Consensus       158 i~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       158 ILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             EEeeccCCCCHHHHHHHHHHhCCC
Confidence            999999999999999999987754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=2.1e-22  Score=153.86  Aligned_cols=147  Identities=24%  Similarity=0.284  Sum_probs=103.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccc----eeEEEEEECCeEEEEEEcCCChh--------hHHHHHhhccCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG----FNVEAVEYKNKSFCVWDVGGQNK--------IRALWRHYFRDT   85 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~~   85 (181)
                      ++|+++|.+|+|||||+|++.+.........++    .....+.+.+..+.+|||||.+.        +......++..+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            579999999999999999999877433333333    33445666789999999999876        344456678899


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      |++++|+|+.+..+..  ..++...+..   .+.|+++|+||+|+.+.  .+...+....   +  .-.++++||.+|.|
T Consensus        82 d~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~l---g--~~~~~~iSa~~g~g  149 (435)
T PRK00093         82 DVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSL---G--LGEPYPISAEHGRG  149 (435)
T ss_pred             CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhc---C--CCCCEEEEeeCCCC
Confidence            9999999998653322  2233333333   37899999999997541  1222222211   1  11379999999999


Q ss_pred             HHHHHHHHHhh
Q 030233          166 LYEGLDWLSNN  176 (181)
Q Consensus       166 i~~l~~~i~~~  176 (181)
                      ++++++.+.+.
T Consensus       150 v~~l~~~I~~~  160 (435)
T PRK00093        150 IGDLLDAILEE  160 (435)
T ss_pred             HHHHHHHHHhh
Confidence            99999999873

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=9.6e-22  Score=147.66  Aligned_cols=154  Identities=25%  Similarity=0.260  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEEC-CeEEEEEEcCCChh----hHHHHH---hhccCCCE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYK-NKSFCVWDVGGQNK----IRALWR---HYFRDTLG   87 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~-~~~~~i~d~~g~~~----~~~~~~---~~~~~~d~   87 (181)
                      .|+++|.|++|||||+|++++....  .+ ..|...+...+.+. +..+.+||+||...    ...+..   ..++.+++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l  239 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV  239 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence            7999999999999999999986522  11 22333344445555 68899999999532    222323   33456999


Q ss_pred             EEEEEECCCc---ccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           88 LTFVVDSSDR---ERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        88 ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      +++|+|+++.   ++++....|...+.... ...+.|+++|+||+|+...  .+.+.......  .   .+++++||+++
T Consensus       240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l--~---~~i~~iSA~tg  312 (424)
T PRK12297        240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKL--G---PKVFPISALTG  312 (424)
T ss_pred             EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHh--C---CcEEEEeCCCC
Confidence            9999999864   56666666665554321 2247899999999998432  22222211111  1   46999999999


Q ss_pred             CCHHHHHHHHHhhhhc
Q 030233          164 QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (181)
                      +|++++++++.+.+.+
T Consensus       313 eGI~eL~~~L~~~l~~  328 (424)
T PRK12297        313 QGLDELLYAVAELLEE  328 (424)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999887654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=3.3e-23  Score=131.56  Aligned_cols=109  Identities=25%  Similarity=0.408  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc---cccCccc--e--eEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV---TTTPTIG--F--NVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~---~~~~~~~--~--~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ||+|+|++|+|||||++++++....   ...++.+  +  ...........+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7899999999999999999998865   1122222  2  2222222445689999999998887766778899999999


Q ss_pred             EECCCcccHHHHHHH---HHHHHcCCCCCCCeEEEEEeCCC
Q 030233           92 VDSSDRERISEARNE---LHQILSDNELSNAALLVFANKQD  129 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piilv~nK~D  129 (181)
                      ||+++++++..+..+   +..+...  ..++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            999999999987554   4444332  24699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00880 Era_like Era (E

Probab=99.89  E-value=8e-22  Score=130.78  Aligned_cols=151  Identities=22%  Similarity=0.212  Sum_probs=105.1

Q ss_pred             EEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEEC-CeEEEEEEcCCChhhH-------HHHHhhccCCCEEE
Q 030233           22 MVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYK-NKSFCVWDVGGQNKIR-------ALWRHYFRDTLGLT   89 (181)
Q Consensus        22 ~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~i~d~~g~~~~~-------~~~~~~~~~~d~ii   89 (181)
                      ++|++|+|||||++++++........    +........... ...+.+||+||.....       ......+..+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            58999999999999999876442222    222222223333 6799999999965443       34455778899999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|+|+.+........ +......    .+.|+++|+||+|+.......................+++++||.+++|++++
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            999999877666654 2333222    47899999999999875444443221122222445678999999999999999


Q ss_pred             HHHHHhhh
Q 030233          170 LDWLSNNI  177 (181)
Q Consensus       170 ~~~i~~~~  177 (181)
                      ++++.+.+
T Consensus       156 ~~~l~~~~  163 (163)
T cd00880         156 REALIEAL  163 (163)
T ss_pred             HHHHHhhC
Confidence            99998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.89  E-value=1.1e-21  Score=156.36  Aligned_cols=156  Identities=19%  Similarity=0.181  Sum_probs=110.6

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ..+...|+++|+.++|||||++++.+..+...   ..|.......+.+.+..+.+|||||++.|..++...+..+|++|+
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            45778999999999999999999987664321   123333334566678899999999999999999988999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc--cC--CccEEEEEeeccCCCCH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS--LG--QRRWSIQSCSAISGQGL  166 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~i  166 (181)
                      |+|+++... ......+... ..   .++|+|+++||+|+.+. +.+.+...+....  ..  ...++++++||++|+|+
T Consensus       367 VVdAddGv~-~qT~e~i~~a-~~---~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI  440 (787)
T PRK05306        367 VVAADDGVM-PQTIEAINHA-KA---AGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI  440 (787)
T ss_pred             EEECCCCCC-HhHHHHHHHH-Hh---cCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence            999986321 1111222222 21   47899999999999653 2333333221110  01  12468999999999999


Q ss_pred             HHHHHHHHh
Q 030233          167 YEGLDWLSN  175 (181)
Q Consensus       167 ~~l~~~i~~  175 (181)
                      ++++++|..
T Consensus       441 ~eLle~I~~  449 (787)
T PRK05306        441 DELLEAILL  449 (787)
T ss_pred             hHHHHhhhh
Confidence            999999874

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.89  E-value=8.6e-22  Score=154.02  Aligned_cols=155  Identities=21%  Similarity=0.131  Sum_probs=108.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC---cc-c--ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE---IV-T--TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~---~~-~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +.|+++|++++|||||++++.+..   ++ +  ...|.......+...+..+.+||+||++.|.......+..+|++++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV   80 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV   80 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence            468999999999999999999743   21 1  12344445555667778999999999999998888889999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHHH----HHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPTAE----VADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      +|+++.. .....+.+.. +..   .++| +++|+||+|+.+....+.    +........ ...+.+++++||++|+|+
T Consensus        81 VDa~~G~-~~qT~ehl~i-l~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~ii~vSA~tG~GI  154 (581)
T TIGR00475        81 VDADEGV-MTQTGEHLAV-LDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAKIFKTSAKTGQGI  154 (581)
T ss_pred             EECCCCC-cHHHHHHHHH-HHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeCCCCCCc
Confidence            9998731 1111222222 222   2566 999999999976332222    222211110 012568999999999999


Q ss_pred             HHHHHHHHhhhh
Q 030233          167 YEGLDWLSNNIS  178 (181)
Q Consensus       167 ~~l~~~i~~~~~  178 (181)
                      +++++.+.+.+.
T Consensus       155 ~eL~~~L~~l~~  166 (581)
T TIGR00475       155 GELKKELKNLLE  166 (581)
T ss_pred             hhHHHHHHHHHH
Confidence            999998876654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2e-21  Score=145.13  Aligned_cols=158  Identities=20%  Similarity=0.178  Sum_probs=106.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECC-eEEEEEEcCCChh-------hHHHHHhhccCCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKN-KSFCVWDVGGQNK-------IRALWRHYFRDTL   86 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~~~~d   86 (181)
                      .|+++|.|++|||||+|++.+... ...    .|.......+...+ ..+.++||||...       ........++.++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            799999999999999999997653 222    22333344455554 4699999999543       1122334577899


Q ss_pred             EEEEEEECC---CcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           87 GLTFVVDSS---DRERISEARNELHQILSD-NELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        87 ~ii~v~d~~---~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      ++++|+|++   +.+.+.....+...+... ....+.|+++|+||+|+.......+....+...  .....+++.+||++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~t  317 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAAS  317 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCC
Confidence            999999998   445666666666665442 122468999999999987533322222221111  01112589999999


Q ss_pred             CCCHHHHHHHHHhhhhc
Q 030233          163 GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (181)
                      ++|+++++++|.+.+.+
T Consensus       318 g~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        318 GLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CcCHHHHHHHHHHHhhh
Confidence            99999999999988754

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.88  E-value=1.8e-22  Score=128.05  Aligned_cols=161  Identities=20%  Similarity=0.282  Sum_probs=126.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      -.++|.++|++..|||||+-.++++.. ..+..+.|++...  +..  .++.+.+||.+|++++..+.+....++-++++
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            368999999999999999999999886 4556777766543  333  67889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT---AEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +||++.++++..+.+|+......+  ....-|+||+|.|..=..+.   +++... +...++.-+.+.++||+.++.|++
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~lp~e~Q~~I~~q-ar~YAk~mnAsL~F~Sts~sINv~  175 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDLPPELQETISRQ-ARKYAKVMNASLFFCSTSHSINVQ  175 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcCCHHHHHHHHHH-HHHHHHHhCCcEEEeeccccccHH
Confidence            999999999999999999876553  23445789999997432222   222221 222334556789999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|+-+..++.+
T Consensus       176 KIFK~vlAklFn  187 (205)
T KOG1673|consen  176 KIFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHHhC
Confidence            999988776643

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.88  E-value=5.8e-21  Score=151.16  Aligned_cols=157  Identities=19%  Similarity=0.198  Sum_probs=109.5

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTL   86 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d   86 (181)
                      ..+...|+++|++++|||||++++.+..+...   ..|.......  +..  .+..+.+|||||++.|..++...+..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            35678999999999999999999987764331   1222222222  222  3589999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc--cC--CccEEEEEeeccC
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS--LG--QRRWSIQSCSAIS  162 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~  162 (181)
                      ++++|+|+++...-+.. +.+..+ ..   .++|+|+++||+|+.+. ..+.+...+....  ..  ...++++++||++
T Consensus       321 iaILVVDA~dGv~~QT~-E~I~~~-k~---~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt  394 (742)
T CHL00189        321 IAILIIAADDGVKPQTI-EAINYI-QA---ANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ  394 (742)
T ss_pred             EEEEEEECcCCCChhhH-HHHHHH-Hh---cCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence            99999999764222221 222222 22   47899999999998753 2333333322110  01  1246899999999


Q ss_pred             CCCHHHHHHHHHhh
Q 030233          163 GQGLYEGLDWLSNN  176 (181)
Q Consensus       163 ~~~i~~l~~~i~~~  176 (181)
                      |+|++++++++...
T Consensus       395 G~GIdeLle~I~~l  408 (742)
T CHL00189        395 GTNIDKLLETILLL  408 (742)
T ss_pred             CCCHHHHHHhhhhh
Confidence            99999999998764

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.87  E-value=9.4e-21  Score=148.51  Aligned_cols=155  Identities=20%  Similarity=0.206  Sum_probs=107.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC--ccc----------------ccCccceeEEEEEE-----CCeEEEEEEcCCChhh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE--IVT----------------TTPTIGFNVEAVEY-----KNKSFCVWDVGGQNKI   74 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~--~~~----------------~~~~~~~~~~~~~~-----~~~~~~i~d~~g~~~~   74 (181)
                      -+++++|+.++|||||+.+++...  +..                ...|.......+.+     ....+.+|||||+.++
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            379999999999999999997632  110                11222222223333     2578999999999999


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEE
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWS  154 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  154 (181)
                      ...+..++..+|++++|+|+++....+....|... ..    .++|+++|+||+|+.+... +.....+... .+.....
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~-~~v~~ei~~~-lg~~~~~  160 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADP-ERVKQEIEDV-IGIDASD  160 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccH-HHHHHHHHHH-hCCCcce
Confidence            99999999999999999999876555444443322 22    3689999999999865322 2222211110 1112235


Q ss_pred             EEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          155 IQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++++||++|.|+++++++|.+.+..
T Consensus       161 vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        161 AVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             EEEEecCCCCCHHHHHHHHHHhCcc
Confidence            8999999999999999999987754

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.87  E-value=2.8e-21  Score=147.04  Aligned_cols=153  Identities=18%  Similarity=0.173  Sum_probs=102.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEEC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYK   59 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|++++|||||+++++...  ..                                ....|.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            4567899999999999999999998432  10                                1223444445556668


Q ss_pred             CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---
Q 030233           60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT---  136 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---  136 (181)
                      +..+.+|||||+++|.......+..+|++++|+|++++.++.....+...+....  ...|+++++||+|+.+....   
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            8999999999999887766666788999999999986323322222222222221  23579999999998752211   


Q ss_pred             ---HHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233          137 ---AEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       137 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                         +++...+.........++++++||++|+|+++
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~  195 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK  195 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence               12222222221122346899999999999987

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.87  E-value=2.2e-20  Score=131.45  Aligned_cols=155  Identities=18%  Similarity=0.192  Sum_probs=110.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--cc------------c-------ccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IV------------T-------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~------------~-------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      +|+++|++|+|||||+++++...  ..            +       ...+.......+.+.+.++.+|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            58999999999999999997632  00            0       111233344556678999999999999999999


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhhCc---------
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT---AEVADKLEL---------  145 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~---------  145 (181)
                      +..+++.+|++++|+|+.+.... ....++..+..    .++|+++++||+|+.+....   +++...+..         
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~  155 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG  155 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence            99999999999999999865432 23344444332    36899999999998753211   111111110         


Q ss_pred             -----------------------------------------------cccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          146 -----------------------------------------------YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       146 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                                                                     ......-+|++..||.++.|++.|++.+.+.+.
T Consensus       156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence                                                           000225678999999999999999999998775

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.87  E-value=3.4e-21  Score=146.56  Aligned_cols=153  Identities=18%  Similarity=0.103  Sum_probs=101.7

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEEC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYK   59 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~   59 (181)
                      ....++|+++|+.++|||||+.+++...  ..                                ....|.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            3457899999999999999999998521  11                                0122344444556667


Q ss_pred             CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030233           60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPNVMP--T  136 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~  136 (181)
                      +..+.+|||||+++|.......+..+|++++|+|+++.++...... +...+....  ...|+++++||+|+.+...  .
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence            8899999999999988777777889999999999988743311111 111122221  2468999999999964222  1


Q ss_pred             ----HHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233          137 ----AEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       137 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                          +++.............++++++||++|+|+++
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence                12222222111122356899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.87  E-value=1.6e-20  Score=125.43  Aligned_cols=163  Identities=15%  Similarity=0.203  Sum_probs=113.8

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCCC----------hhhHHHH
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ----------NKIRALW   78 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~----------~~~~~~~   78 (181)
                      .+.+....-|+++|.+++|||||+|+++++. ....+.|+|.+...-.+ -+..+.+.|.||.          +.+....
T Consensus        18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHH
Confidence            3445566789999999999999999999976 68888889877665333 2233899999993          3444555


Q ss_pred             Hhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH----HHHhhhCccccCCc
Q 030233           79 RHYFR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA----EVADKLELYSLGQR  151 (181)
Q Consensus        79 ~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~~~~~~~~~~~~~~  151 (181)
                      ..+++   +..++++++|+..+  ....+..+...+..   .++|+++++||+|........    .+++.+....... 
T Consensus        98 ~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~-  171 (200)
T COG0218          98 EEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD-  171 (200)
T ss_pred             HHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc-
Confidence            55654   35788899999644  44444444444444   589999999999998754442    3333333221111 


Q ss_pred             cEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          152 RWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      . -++..|+.++.|++++.+.|.+.+...
T Consensus       172 ~-~~~~~ss~~k~Gi~~l~~~i~~~~~~~  199 (200)
T COG0218         172 Q-WVVLFSSLKKKGIDELKAKILEWLKEA  199 (200)
T ss_pred             c-eEEEEecccccCHHHHHHHHHHHhhcc
Confidence            1 188889999999999999999887653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.87  E-value=3.4e-20  Score=121.29  Aligned_cols=158  Identities=23%  Similarity=0.365  Sum_probs=126.6

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcccc-------------cCccceeEEEEEE-CCeEEEEEEcCCChhhHHH
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-------------TPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~   77 (181)
                      ...+...+|++.|+.++||||++..++.......             ..|...++....+ .+..+.+++||||+++.-.
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH
Confidence            3456788999999999999999999987663211             1233444445555 4489999999999999999


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      |....+++.+.|+++|.+.+..+  ....+..++.+..  .+|++++.||.|+....+.+++.+.+....   ...++++
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~  157 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIE  157 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceee
Confidence            99999999999999999988877  3334444445422  399999999999999999999999887653   4668999


Q ss_pred             eeccCCCCHHHHHHHHHhh
Q 030233          158 CSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~  176 (181)
                      .+|.++++..+.++.+...
T Consensus       158 ~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         158 IDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             eecccchhHHHHHHHHHhh
Confidence            9999999999999988765

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.86  E-value=1.1e-20  Score=130.99  Aligned_cols=146  Identities=19%  Similarity=0.177  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--ccc--------------------------------ccCccceeEEEEEECCeEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IVT--------------------------------TTPTIGFNVEAVEYKNKSFC   64 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~~~~   64 (181)
                      +|+++|++++|||||+++++...  ...                                ...|.......+.+.+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            58999999999999999997643  110                                11233333344556788999


Q ss_pred             EEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhh
Q 030233           65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADK  142 (181)
Q Consensus        65 i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~  142 (181)
                      +|||||++++.......+..+|++++|+|+++...- .... ...++...  ...++|+|+||+|+.+...  ...+...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            999999998877777788899999999999864211 1111 22222221  2346788999999865321  1112222


Q ss_pred             hCc--cccCCccEEEEEeeccCCCCHHH
Q 030233          143 LEL--YSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       143 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +..  ...+....+++++||++|.|+++
T Consensus       157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         157 YLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            110  11122345799999999999975

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.86  E-value=2.1e-20  Score=146.17  Aligned_cols=156  Identities=20%  Similarity=0.230  Sum_probs=113.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--ccc-----------------ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IVT-----------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   79 (181)
                      +|+++|+.++|||||+++++...  +..                 ...|+......+.+.+..+.+|||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            68999999999999999998632  211                 12334444455777899999999999999999999


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH---HHHHhhhCcccc--CCccEE
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT---AEVADKLELYSL--GQRRWS  154 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~  154 (181)
                      ..++.+|++++|+|+.+. .......++..+..    .++|+++|+||+|+.+....   +++...+.....  ....++
T Consensus        83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            999999999999999753 34455566666544    36899999999998653222   222222211111  223568


Q ss_pred             EEEeeccCCC----------CHHHHHHHHHhhhhc
Q 030233          155 IQSCSAISGQ----------GLYEGLDWLSNNISV  179 (181)
Q Consensus       155 ~~~~Sa~~~~----------~i~~l~~~i~~~~~~  179 (181)
                      ++.+||++|.          |++.+|+.+.+.+..
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence            9999999996          899999999988754

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.86  E-value=1.1e-20  Score=142.81  Aligned_cols=159  Identities=16%  Similarity=0.095  Sum_probs=104.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc------ccCccceeEEEE--------------------EE------CCeE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT------TTPTIGFNVEAV--------------------EY------KNKS   62 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~------~~~~~~~~~~~~--------------------~~------~~~~   62 (181)
                      +.+++|+++|++++|||||++++.+.....      ...|.......+                    ..      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            567899999999999999999997542211      111111111100                    00      1467


Q ss_pred             EEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH----H
Q 030233           63 FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA----E  138 (181)
Q Consensus        63 ~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----~  138 (181)
                      +.+||+||+++|...+......+|++++|+|+++........+.+..+ ...  ...|+++++||+|+.+.....    +
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            999999999999988888888999999999998542112222222222 211  235789999999987532221    2


Q ss_pred             HHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      +.......  ....++++++||++|+|+++++++|...+.
T Consensus       159 i~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       159 IKEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            22211111  123568999999999999999999988654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.86  E-value=1.1e-20  Score=147.29  Aligned_cols=153  Identities=22%  Similarity=0.178  Sum_probs=103.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccc-----ccCccceeEEEEEE----------------CCeEEEEEEcCCChhh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-----TTPTIGFNVEAVEY----------------KNKSFCVWDVGGQNKI   74 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-----~~~~~~~~~~~~~~----------------~~~~~~i~d~~g~~~~   74 (181)
                      +..-|+++|++++|||||++++.+..+..     ..++++........                ....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            45679999999999999999999876432     22333333222211                1124889999999999


Q ss_pred             HHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHH
Q 030233           75 RALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--------------PTA  137 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--------------~~~  137 (181)
                      ..++...++.+|++++|+|+++   +.++..+.    . +..   .+.|+++++||+|+.+.-              ..+
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~-l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~  154 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----I-LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI  154 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----H-HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence            9999999999999999999986   33333322    2 222   368999999999986421              011


Q ss_pred             HHHh-----------hhCcccc----------CCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          138 EVAD-----------KLELYSL----------GQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       138 ~~~~-----------~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      .+..           .+....+          -....+++++||++|+|++++.+++...
T Consensus       155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence            1110           0110000          1235789999999999999999988643

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=8.4e-20  Score=128.36  Aligned_cols=149  Identities=22%  Similarity=0.172  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECCeEEEEEEcCCChhh-------HHHHHhhccCCCEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKSFCVWDVGGQNKI-------RALWRHYFRDTLGL   88 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~d~i   88 (181)
                      +++++|.+|+|||||++++.+.....   ...|.......+.+.+..+++||+||....       .......++.+|++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i   81 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI   81 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence            68999999999999999999875321   122333445556678899999999996432       22345678899999


Q ss_pred             EEEEECCCcc-cHHHHHHHHH----------------------------------------HHHcCC-------------
Q 030233           89 TFVVDSSDRE-RISEARNELH----------------------------------------QILSDN-------------  114 (181)
Q Consensus        89 i~v~d~~~~~-s~~~~~~~~~----------------------------------------~~~~~~-------------  114 (181)
                      ++|+|+++++ ....+.+.+.                                        .+++..             
T Consensus        82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~  161 (233)
T cd01896          82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI  161 (233)
T ss_pred             EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence            9999998754 2222222221                                        111000             


Q ss_pred             -----------CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          115 -----------ELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       115 -----------~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                                 ....+|+++|+||+|+.+   .++.....     ..  ..++++||++|.|++++|+.+.+.+
T Consensus       162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---~~~~~~~~-----~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         162 TVDDLIDVIEGNRVYIPCLYVYNKIDLIS---IEELDLLA-----RQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CHHHHHHHHhCCceEeeEEEEEECccCCC---HHHHHHHh-----cC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       012369999999999865   33333211     11  2489999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.86  E-value=1.9e-20  Score=118.65  Aligned_cols=162  Identities=23%  Similarity=0.309  Sum_probs=122.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc---ccccCccceeEEE-EEE---CCeEEEEEEcCCChhh-HHHHHhhccCCCE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI---VTTTPTIGFNVEA-VEY---KNKSFCVWDVGGQNKI-RALWRHYFRDTLG   87 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~---~~~~~~~~~~~~~-~~~---~~~~~~i~d~~g~~~~-~~~~~~~~~~~d~   87 (181)
                      +..+++++|..++|||+++.+++.++-   .+.-||+...+.. ++-   ....+.++||.|...+ ..+-..++.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            468999999999999999999987662   2334555432222 211   3357999999997777 4455667788999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +++||+..+++||+.....-..+-.+.+...+|+++++||+|+.+   ..++....+...++...+..++++|.+...+-
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~---p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~  164 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE---PREVDMDVAQIWAKREKVKLWEVTAMDRPSLY  164 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc---chhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence            999999999999999887777776777778899999999999865   22333333333445566789999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      +.|..++.++.+.
T Consensus       165 epf~~l~~rl~~p  177 (198)
T KOG3883|consen  165 EPFTYLASRLHQP  177 (198)
T ss_pred             hHHHHHHHhccCC
Confidence            9999999887543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.86  E-value=3.4e-20  Score=137.47  Aligned_cols=151  Identities=18%  Similarity=0.208  Sum_probs=111.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCChhhHHH--------HHhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQNKIRAL--------WRHYF   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~~~~~~--------~~~~~   82 (181)
                      ...++++++|.||+|||||+|.+++.+..-..+.+|++.+.    +.+.++.+.+.||+|-.+-...        ....+
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            35689999999999999999999999977777777777665    4459999999999995432221        33466


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      +.+|.+++|+|.+.+.+  .....+...    ...+.|+++|.||.|+........+ + .      ....+++.+||++
T Consensus       295 ~~ADlvL~v~D~~~~~~--~~d~~~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~-~-~------~~~~~~i~iSa~t  360 (454)
T COG0486         295 EEADLVLFVLDASQPLD--KEDLALIEL----LPKKKPIIVVLNKADLVSKIELESE-K-L------ANGDAIISISAKT  360 (454)
T ss_pred             HhCCEEEEEEeCCCCCc--hhhHHHHHh----cccCCCEEEEEechhcccccccchh-h-c------cCCCceEEEEecC
Confidence            78999999999987521  222211111    1257999999999999875553333 1 1      1222689999999


Q ss_pred             CCCHHHHHHHHHhhhhc
Q 030233          163 GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (181)
                      |+|++.+.+.|.+.+..
T Consensus       361 ~~Gl~~L~~~i~~~~~~  377 (454)
T COG0486         361 GEGLDALREAIKQLFGK  377 (454)
T ss_pred             ccCHHHHHHHHHHHHhh
Confidence            99999999999876543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.86  E-value=3e-20  Score=140.36  Aligned_cols=160  Identities=15%  Similarity=0.090  Sum_probs=103.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCccc------ccCccceeEEEEEE------------------C--------Ce
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVT------TTPTIGFNVEAVEY------------------K--------NK   61 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~------~~~~~~~~~~~~~~------------------~--------~~   61 (181)
                      .+..++|+++|+.++|||||+.++.+.....      ...|+........+                  .        ..
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            4567899999999999999999996532111      11222221110000                  0        25


Q ss_pred             EEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH----
Q 030233           62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA----  137 (181)
Q Consensus        62 ~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~----  137 (181)
                      .+.+|||||+++|..........+|++++|+|+.++.........+..+...   ...|+++|+||+|+.+.....    
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHH
Confidence            7999999999998877777777889999999998642111112222222111   234789999999997643322    


Q ss_pred             HHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ++.......  ...+.+++++||++|+|++++++.|.+.+.
T Consensus       163 ~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        163 QIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            222222111  123568999999999999999999998764

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.86  E-value=4.5e-20  Score=126.23  Aligned_cols=155  Identities=21%  Similarity=0.166  Sum_probs=101.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCc----------c---------cccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEI----------V---------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      .++|+++|+.++|||||++++++...          .         ....|.......+...+..+.++||||+.++...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            47899999999999999999975310          0         1112222333334456788999999999999888


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhhCccccCCc
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-A----EVADKLELYSLGQR  151 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~  151 (181)
                      ....+..+|++++|+|+...-. ......+..+..    .++| +|+++||+|+...... +    ++...+........
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            8888899999999999975321 222233333322    2455 7899999998642221 1    12222222112234


Q ss_pred             cEEEEEeeccCCCCH----------HHHHHHHHhh
Q 030233          152 RWSIQSCSAISGQGL----------YEGLDWLSNN  176 (181)
Q Consensus       152 ~~~~~~~Sa~~~~~i----------~~l~~~i~~~  176 (181)
                      +++++++||++|.|+          ..|++.|...
T Consensus       157 ~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~  191 (195)
T cd01884         157 NTPIVRGSALKALEGDDPNKWVKKILELLDALDSY  191 (195)
T ss_pred             CCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence            678999999999985          4566665544

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK10218 GTP-binding protein; Provisional

Probab=99.85  E-value=7.8e-20  Score=142.92  Aligned_cols=159  Identities=17%  Similarity=0.186  Sum_probs=112.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC--Ccccc-------------cCcccee----EEEEEECCeEEEEEEcCCChhhHH
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG--EIVTT-------------TPTIGFN----VEAVEYKNKSFCVWDVGGQNKIRA   76 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~--~~~~~-------------~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~~   76 (181)
                      +--+|+++|+.++|||||+++++..  .+...             ..+.+++    ...+.+.+..+.+|||||+.+|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            3457999999999999999999863  22211             1122333    334566889999999999999999


Q ss_pred             HHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH---HHhhhCcccc--CCc
Q 030233           77 LWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE---VADKLELYSL--GQR  151 (181)
Q Consensus        77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~---~~~~~~~~~~--~~~  151 (181)
                      .+..+++.+|++++|+|+.+.. .......+..+..    .++|.++++||+|+.+....+.   +...+.....  ...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~  158 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL  158 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence            9999999999999999997642 2233344444433    3688899999999875433332   2222211111  223


Q ss_pred             cEEEEEeeccCCC----------CHHHHHHHHHhhhhc
Q 030233          152 RWSIQSCSAISGQ----------GLYEGLDWLSNNISV  179 (181)
Q Consensus       152 ~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~~  179 (181)
                      .++++.+||.+|.          ++..+++.+.+.+..
T Consensus       159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~  196 (607)
T PRK10218        159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA  196 (607)
T ss_pred             CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence            5689999999998          589999999887753

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=4.4e-20  Score=147.85  Aligned_cols=151  Identities=20%  Similarity=0.189  Sum_probs=104.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE----EEEECCeEEEEEEcCCChhhHH----------HHHh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE----AVEYKNKSFCVWDVGGQNKIRA----------LWRH   80 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~d~~g~~~~~~----------~~~~   80 (181)
                      ++.++|+++|++|+|||||+|++.+... .....+|++..    .+...+..+.++||||...+..          ....
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            3567999999999999999999988653 33344554443    3455788999999999765431          1222


Q ss_pred             hc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEe
Q 030233           81 YF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSC  158 (181)
Q Consensus        81 ~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      ++  ..+|++++|+|+++.+.-   ..+...+.+    .++|+++++||+|+.+........+.+.    +..+.+++++
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpi  148 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPL  148 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEE
Confidence            32  478999999999875432   223333333    3799999999999864333222222221    1234579999


Q ss_pred             eccCCCCHHHHHHHHHhhh
Q 030233          159 SAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~~  177 (181)
                      ||++|+|++++.+.+.+..
T Consensus       149 SA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        149 VSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EeecCCCHHHHHHHHHHhh
Confidence            9999999999999987654

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=7.3e-21  Score=122.00  Aligned_cols=163  Identities=33%  Similarity=0.572  Sum_probs=141.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      ++.=+++++|-.++|||||++-+-......+.||.-.+...+.+.+..++.+|.+|+..-+..|..++..+|++++.+|+
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda   97 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA   97 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence            45678999999999999999999888788888888877888888999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc------------CCccEEEEEeeccC
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL------------GQRRWSIQSCSAIS  162 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~  162 (181)
                      .+.+.|.+.+..++.++........|+++.+||+|.+...+.++.+....+...            ..+.+.++.||...
T Consensus        98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~  177 (193)
T KOG0077|consen   98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR  177 (193)
T ss_pred             hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence            999999999998888887766678999999999999998888877766643322            23566789999999


Q ss_pred             CCCHHHHHHHHHhhh
Q 030233          163 GQGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (181)
                      +.+--+.|.|+...+
T Consensus       178 ~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  178 KMGYGEGFKWLSQYI  192 (193)
T ss_pred             cCccceeeeehhhhc
Confidence            999999998887654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=1.4e-20  Score=147.36  Aligned_cols=142  Identities=20%  Similarity=0.206  Sum_probs=95.8

Q ss_pred             cCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChhhHHH------HHhhc--cCCCEEEEE
Q 030233           24 GLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNKIRAL------WRHYF--RDTLGLTFV   91 (181)
Q Consensus        24 G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~~~------~~~~~--~~~d~ii~v   91 (181)
                      |.+|+|||||+|++.+... ...+.++++    ...+.+.+..+.+|||||...+...      ...++  ..+|++++|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V   79 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV   79 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence            8999999999999998764 222333333    2345567788999999997765432      33333  368999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +|.++.+.   ...+...+.+    .+.|+++++||+|+.+........+.+.    +..+.+++++||++|+|++++++
T Consensus        80 vDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~  148 (591)
T TIGR00437        80 VDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKD  148 (591)
T ss_pred             ecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHH
Confidence            99986432   2223333322    3689999999999864322211111111    12345799999999999999999


Q ss_pred             HHHhhh
Q 030233          172 WLSNNI  177 (181)
Q Consensus       172 ~i~~~~  177 (181)
                      ++.+..
T Consensus       149 ~i~~~~  154 (591)
T TIGR00437       149 AIRKAI  154 (591)
T ss_pred             HHHHHh
Confidence            998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.85  E-value=8.8e-20  Score=122.21  Aligned_cols=154  Identities=18%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCCChh----------hHHHHHhhcc---
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNK----------IRALWRHYFR---   83 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~----------~~~~~~~~~~---   83 (181)
                      .|+++|++|+|||||++.++++. .+...++.+.+.....+ .+..+.+|||||...          +......++.   
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE   80 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence            37999999999999999999544 44455555544333222 234899999999432          3333344443   


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAIS  162 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~  162 (181)
                      ..+++++++|..+..+...  ..+...+..   .+.|+++++||+|+.................. .....+++++||++
T Consensus        81 ~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~  155 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK  155 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence            4578899999976532221  112222222   25899999999998654333322222211110 12345799999999


Q ss_pred             CCCHHHHHHHHHhhh
Q 030233          163 GQGLYEGLDWLSNNI  177 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~  177 (181)
                      +.++++++++|.+.+
T Consensus       156 ~~~~~~l~~~l~~~~  170 (170)
T cd01876         156 GQGIDELRALIEKWL  170 (170)
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.85  E-value=2.2e-20  Score=130.38  Aligned_cols=146  Identities=18%  Similarity=0.176  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECCeEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKNKSFC   64 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~~~~~   64 (181)
                      +|+++|+.++|||||+.+++...  ..                                ....|.......+.+.+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            58999999999999999996321  00                                011123333445666889999


Q ss_pred             EEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc-----cH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-C--
Q 030233           65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE-----RI-SEARNELHQILSDNELSNAALLVFANKQDLPNVM-P--  135 (181)
Q Consensus        65 i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-----s~-~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~--  135 (181)
                      +|||||+..+...+...+..+|++++|+|+++..     .. ......+... ...  ...|+++++||+|+.... +  
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL--GVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc--CCCeEEEEEEccccccccccHH
Confidence            9999999888887777888999999999998742     11 1122222222 221  246899999999997421 1  


Q ss_pred             -HHHHHhhh----CccccCCccEEEEEeeccCCCCHH
Q 030233          136 -TAEVADKL----ELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus       136 -~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                       .+.+...+    .........++++++||++|+|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence             22222222    111112235789999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.84  E-value=1.6e-19  Score=126.03  Aligned_cols=152  Identities=21%  Similarity=0.206  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccc-----------------cC-------ccceeE-----------------EEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTT-----------------TP-------TIGFNV-----------------EAVE   57 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~-----------------~~-------~~~~~~-----------------~~~~   57 (181)
                      +|+++|+.++|||||++++..+.+...                 ..       .++++.                 ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            578999999999999999986543210                 00       111111                 1233


Q ss_pred             ECCeEEEEEEcCCChhhHHHHHhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233           58 YKNKSFCVWDVGGQNKIRALWRHYFR--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP  135 (181)
Q Consensus        58 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  135 (181)
                      ..+..+.+.||||++++.......+.  .+|++++|+|+..... ......+..+ ..   .++|+++|+||+|+.+...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence            35678999999999998776655554  6899999999875422 2222333333 22   3689999999999865433


Q ss_pred             HHHH----HhhhCccc---------------------cCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233          136 TAEV----ADKLELYS---------------------LGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus       136 ~~~~----~~~~~~~~---------------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      ....    .+.+....                     ......++|.+||.+|+|++++++.|..
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            3322    22222100                     0123458999999999999999987753

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.84  E-value=1.5e-19  Score=141.29  Aligned_cols=154  Identities=20%  Similarity=0.189  Sum_probs=102.7

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEEC----C------------eEEEEEEcCCCh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEYK----N------------KSFCVWDVGGQN   72 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~------------~~~~i~d~~g~~   72 (181)
                      ..+++.|+++|++++|||||++++.+......     .++.|.+.......    +            ..+.+|||||++
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            45678899999999999999999987653322     22333332221110    0            127899999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--------------  135 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------  135 (181)
                      .|..++...+..+|++++|+|+++   +.++..+.    . +..   .++|+++++||+|+.....              
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~-~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~  154 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----I-LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ  154 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----H-HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence            999998888899999999999986   44443332    1 222   3789999999999852110              


Q ss_pred             HHH-----------HHhhhCcccc----------CCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233          136 TAE-----------VADKLELYSL----------GQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus       136 ~~~-----------~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      ...           +...+....+          .....+++++||.+|+|++++++.+..
T Consensus       155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence            000           1111111110          013578999999999999999988764

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=9.3e-21  Score=124.08  Aligned_cols=156  Identities=22%  Similarity=0.317  Sum_probs=130.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .++++++|+.|.||||++++.+.+.+.. +.+|+|........    ..+.+..|||+|++.+......++-+..+.+++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            6899999999999999999999999754 78899988776544    348999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ||+...-++.+...|...+.+...  ++|+++++||.|......   ..+  ........++.+++.||+.+.|.+.-|-
T Consensus        90 FdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~---k~k--~v~~~rkknl~y~~iSaksn~NfekPFl  162 (216)
T KOG0096|consen   90 FDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKV---KAK--PVSFHRKKNLQYYEISAKSNYNFERPFL  162 (216)
T ss_pred             eeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceecccccc---ccc--cceeeecccceeEEeecccccccccchH
Confidence            999999899999999999877643  599999999999765321   111  1222256788999999999999999999


Q ss_pred             HHHhhhhc
Q 030233          172 WLSNNISV  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      |+++++..
T Consensus       163 ~LarKl~G  170 (216)
T KOG0096|consen  163 WLARKLTG  170 (216)
T ss_pred             HHhhhhcC
Confidence            99988753

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.84  E-value=6.6e-20  Score=117.34  Aligned_cols=135  Identities=22%  Similarity=0.300  Sum_probs=91.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCC----ChhhHHHHHhhccCCCEEEEEEEC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGG----QNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      ||+++|+.|+|||||++++.+... .+..|..+     .+.+   .++||||    ...+..-......++|.+++|.|+
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i-----~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da   73 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAI-----EYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA   73 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-CcCcccee-----Eecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence            689999999999999999987654 22222222     1222   4589999    334444444555689999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLP-NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL  173 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  173 (181)
                      +++.+.  ....+...      -..|+|=|+||+|+. +..+.+...+.+...  +..  .+|++|+.+|+|+++|.++|
T Consensus        74 t~~~~~--~pP~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a--G~~--~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   74 TEPRSV--FPPGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNA--GVK--EIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             CCCCcc--CCchhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHc--CCC--CeEEEECCCCcCHHHHHHHH
Confidence            976431  11222222      257999999999998 334444444444433  223  36999999999999999988


Q ss_pred             H
Q 030233          174 S  174 (181)
Q Consensus       174 ~  174 (181)
                      .
T Consensus       142 ~  142 (143)
T PF10662_consen  142 E  142 (143)
T ss_pred             h
Confidence            5

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.84  E-value=1.7e-19  Score=141.67  Aligned_cols=155  Identities=20%  Similarity=0.137  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc----c--ccCccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV----T--TTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~----~--~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      -|+++|+.++|||||++++.+....    +  ...|+...+..+.. .+..+.+|||||+++|.......+..+|++++|
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV   81 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV   81 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999874321    1  23444444344433 456789999999999988877888999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHHHHHhhhCccc--cCCccEEEEEeeccCCCCHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPTAEVADKLELYS--LGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +|+++.- .....+.+. ++..   .++| +++|+||+|+.+....+.....+....  ......+++++||++|+|+++
T Consensus        82 Vda~eg~-~~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         82 VACDDGV-MAQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            9997531 112222222 2222   2344 689999999875333322222221111  122346799999999999999


Q ss_pred             HHHHHHhhhh
Q 030233          169 GLDWLSNNIS  178 (181)
Q Consensus       169 l~~~i~~~~~  178 (181)
                      +++.|.+...
T Consensus       157 L~~~L~~~~~  166 (614)
T PRK10512        157 LREHLLQLPE  166 (614)
T ss_pred             HHHHHHHhhc
Confidence            9999987543

>PRK12736 elongation factor Tu; Reviewed

Probab=99.82  E-value=6.7e-19  Score=132.58  Aligned_cols=160  Identities=19%  Similarity=0.176  Sum_probs=106.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCc----------c---------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEI----------V---------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~----------~---------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   74 (181)
                      .++.++|+++|+.++|||||++++++...          .         ....|.......+...+..+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            45678999999999999999999986310          0         1122333333333346678999999999999


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCHH-----HHHhhhCcccc
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPTA-----EVADKLELYSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~-----~~~~~~~~~~~  148 (181)
                      .......+..+|++++|+|+.+.- .....+.+..+..    .++| +|+++||+|+.+.....     ++...+....+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            888777788899999999997531 1222233333322    2566 78899999987422211     22222221222


Q ss_pred             CCccEEEEEeeccCCC--------CHHHHHHHHHhhhh
Q 030233          149 GQRRWSIQSCSAISGQ--------GLYEGLDWLSNNIS  178 (181)
Q Consensus       149 ~~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~~~  178 (181)
                      .....+++++||++|.        ++.++++.+.+.+.
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            2235689999999983        68899998887654

>cd04169 RF3 RF3 subfamily

Probab=99.82  E-value=3.5e-18  Score=122.24  Aligned_cols=110  Identities=17%  Similarity=0.202  Sum_probs=79.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--ccc-----------------------ccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IVT-----------------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNK   73 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   73 (181)
                      +|+++|++|+|||||+++++...  ...                       ...++......+.+.+..+.+|||||+.+
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d   83 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED   83 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence            58999999999999999997522  110                       01122233445677899999999999999


Q ss_pred             hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      |.......++.+|++++|+|+++.... ....++. ....   .++|+++++||+|+.+.
T Consensus        84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHHh---cCCCEEEEEECCccCCC
Confidence            888777888999999999999764322 2223333 2222   47899999999998653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.81  E-value=2.5e-18  Score=129.62  Aligned_cols=158  Identities=20%  Similarity=0.171  Sum_probs=103.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC-------c---c---------cccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE-------I---V---------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~-------~---~---------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   75 (181)
                      +..++|+++|++++|||||++++++..       .   .         ....|.......+...+..+.++||||+++|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            457899999999999999999998621       1   0         11222333233344466789999999999988


Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCCH-H----HHHhhhCccccC
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL-VFANKQDLPNVMPT-A----EVADKLELYSLG  149 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~-~----~~~~~~~~~~~~  149 (181)
                      ......+..+|++++|+|+.+.. .....+.+..+..    .++|.+ +++||+|+.+.... +    ++...+......
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            87778888999999999997532 1222233333322    356755 68999998742221 1    222222211111


Q ss_pred             CccEEEEEeeccCCC----------CHHHHHHHHHhhh
Q 030233          150 QRRWSIQSCSAISGQ----------GLYEGLDWLSNNI  177 (181)
Q Consensus       150 ~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~  177 (181)
                      ..+.+++++||.+|.          ++.++++.|.+.+
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            135789999999984          6888888888765

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.81  E-value=2.1e-19  Score=135.63  Aligned_cols=161  Identities=14%  Similarity=0.181  Sum_probs=119.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeE---EEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNV---EAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+.+||+++|+.|+|||||+-+++..++++..|..-...   ..+.-+.....+.|++..++-+......++.++++.++
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv   86 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLV   86 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence            568999999999999999999999988766544321110   11112445689999998777666666788899999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCCCCH--HH-HHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           92 VDSSDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPNVMPT--AE-VADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      |+.+++++++.+...|..+++...  ..++|+|+|+||+|.......  +. +.......   ...-.+++|||++-.++
T Consensus        87 yavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---~EiEtciecSA~~~~n~  163 (625)
T KOG1707|consen   87 YAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---AEIETCIECSALTLANV  163 (625)
T ss_pred             EecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHh---HHHHHHHhhhhhhhhhh
Confidence            999999999999988887776532  357999999999998765443  22 22211111   11114899999999999


Q ss_pred             HHHHHHHHhhhh
Q 030233          167 YEGLDWLSNNIS  178 (181)
Q Consensus       167 ~~l~~~i~~~~~  178 (181)
                      .++|+...+++.
T Consensus       164 ~e~fYyaqKaVi  175 (625)
T KOG1707|consen  164 SELFYYAQKAVI  175 (625)
T ss_pred             Hhhhhhhhheee
Confidence            999999887754

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.80  E-value=2.2e-18  Score=121.25  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=106.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCCh---------hhH---HHH
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN---------KIR---ALW   78 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~---------~~~---~~~   78 (181)
                      .+.++|+++|+|++|||||.|.+.|......+..+.++...    +.-.+.++.++||||..         ...   +..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~  149 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP  149 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence            46689999999999999999999999865555444444443    44478899999999921         111   123


Q ss_pred             HhhccCCCEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-----------------HHHH
Q 030233           79 RHYFRDTLGLTFVVDSSDRERIS--EARNELHQILSDNELSNAALLVFANKQDLPNVMP-----------------TAEV  139 (181)
Q Consensus        79 ~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-----------------~~~~  139 (181)
                      ......+|++++|+|+++....-  .....+...      ..+|-++|+||.|......                 ..++
T Consensus       150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            34667899999999998632211  112222222      4688999999999765311                 1112


Q ss_pred             HhhhCccc-----cCCc----cEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          140 ADKLELYS-----LGQR----RWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       140 ~~~~~~~~-----~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      .+......     ....    .-.+|.+||++|+|++++-++|..++...
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            22221111     0111    22599999999999999999999887653

>PRK13351 elongation factor G; Reviewed

Probab=99.80  E-value=4.8e-18  Score=136.21  Aligned_cols=115  Identities=17%  Similarity=0.109  Sum_probs=88.4

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCc--------------c-------cccCccceeEEEEEECCeEEEEEEcCCCh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEI--------------V-------TTTPTIGFNVEAVEYKNKSFCVWDVGGQN   72 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   72 (181)
                      +++..+|+++|+.++|||||+++++...-              .       .+..|+......+.+.+..+.+|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            34567899999999999999999975220              0       12345555556677789999999999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      ++...+..+++.+|++++|+|+++......... +..+ ..   .++|+++++||+|+...
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~~~-~~---~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WRQA-DR---YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHH-Hh---cCCCEEEEEECCCCCCC
Confidence            999999999999999999999987665554333 3333 22   36899999999998763

>cd04167 Snu114p Snu114p subfamily

Probab=99.79  E-value=1.7e-18  Score=120.56  Aligned_cols=155  Identities=17%  Similarity=0.135  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccc------------c------Ccccee----EEEEEE-----CCeEEEEEEcCCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTT------------T------PTIGFN----VEAVEY-----KNKSFCVWDVGGQ   71 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~------------~------~~~~~~----~~~~~~-----~~~~~~i~d~~g~   71 (181)
                      +|+++|+.++|||||+++++.......            .      ...+.+    ...+.+     ....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999987442110            0      011111    111222     2478999999999


Q ss_pred             hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-------CCHHHHHhhhC
Q 030233           72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-------MPTAEVADKLE  144 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-------~~~~~~~~~~~  144 (181)
                      .++.......+..+|++++|+|+.+..+... ..++.....    .+.|+++++||+|+...       ...+.+.+...
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~  156 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID  156 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence            9998888889999999999999987655432 233333322    25899999999997521       11111111111


Q ss_pred             -------ccccC------CccEEEEEeeccCCCCHH--------HHHHHHHhhhh
Q 030233          145 -------LYSLG------QRRWSIQSCSAISGQGLY--------EGLDWLSNNIS  178 (181)
Q Consensus       145 -------~~~~~------~~~~~~~~~Sa~~~~~i~--------~l~~~i~~~~~  178 (181)
                             .....      ..+-.++++|++.+.++.        ++++.|...+.
T Consensus       157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~  211 (213)
T cd04167         157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP  211 (213)
T ss_pred             HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence                   01000      012247889999988776        77777766553

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>CHL00071 tufA elongation factor Tu

Probab=99.79  E-value=5.5e-18  Score=128.23  Aligned_cols=147  Identities=19%  Similarity=0.185  Sum_probs=96.0

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc---------------c----ccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV---------------T----TTPTIGFNVEAVEYKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   74 (181)
                      ++..++|+++|++++|||||++++++..-.               .    ...|.......+...+..+.+.||||+.+|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            456789999999999999999999864210               0    111222222234446778999999999998


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhhCcccc
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-A----EVADKLELYSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~  148 (181)
                      .......+..+|++++|+|+...- .....+.+..+..    .++| +|+++||+|+.+.... +    ++...+.....
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            888888888999999999997532 1222333333322    3567 7789999998753221 1    22222221111


Q ss_pred             CCccEEEEEeeccCCCC
Q 030233          149 GQRRWSIQSCSAISGQG  165 (181)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~  165 (181)
                      ....++++++||.+|.|
T Consensus       164 ~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        164 PGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCcceEEEcchhhccc
Confidence            22357899999999874

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.79  E-value=1.1e-17  Score=126.23  Aligned_cols=157  Identities=19%  Similarity=0.171  Sum_probs=99.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC-------c-----c-------cccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE-------I-----V-------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~-------~-----~-------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   75 (181)
                      +..++|+++|+.++|||||+++|++..       .     .       ....|.......+...+..+.+|||||+++|.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~   89 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence            457899999999999999999997421       0     0       01223333333344466789999999999998


Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-H----HHHhhhCccccC
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-A----EVADKLELYSLG  149 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~----~~~~~~~~~~~~  149 (181)
                      .........+|++++|+|+.+.-. ....+.+..+...    ++| +|+++||+|+.+.... +    ++...+......
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        90 KNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            777777788999999999976321 1222333333222    455 4578999998753221 1    222222222112


Q ss_pred             CccEEEEEeeccCCC--------CHHHHHHHHHhh
Q 030233          150 QRRWSIQSCSAISGQ--------GLYEGLDWLSNN  176 (181)
Q Consensus       150 ~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~  176 (181)
                      ..+++++++||.+|.        ++.++++.+.+.
T Consensus       165 ~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~  199 (394)
T TIGR00485       165 GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY  199 (394)
T ss_pred             ccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence            234789999999875        355666666543

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.79  E-value=2.8e-18  Score=119.36  Aligned_cols=158  Identities=21%  Similarity=0.284  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccc----ccCccceeEEEEEE-CCeEEEEEEcCCChhhHH-----HHHhhccCCCEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVT----TTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRA-----LWRHYFRDTLGL   88 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~-----~~~~~~~~~d~i   88 (181)
                      ||+++|+.++||||+.+.+.++..+.    ..+|..++...+.. ....+.+||.||+..+..     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            78999999999999999999876443    35677777666654 677999999999875544     367788999999


Q ss_pred             EEEEECCCcc---cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc----c--ccCCccEEEEEee
Q 030233           89 TFVVDSSDRE---RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL----Y--SLGQRRWSIQSCS  159 (181)
Q Consensus        89 i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~S  159 (181)
                      |||+|+.+.+   .+......+..+.+.  .++..+-++++|+|+..+...++..+....    .  ..+...+.++.+|
T Consensus        81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            9999998443   333444444444443  378999999999999764333332222111    0  1111248899999


Q ss_pred             ccCCCCHHHHHHHHHhhhhc
Q 030233          160 AISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~  179 (181)
                      ..+ +.+-+.|..+.+.+..
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTST
T ss_pred             CcC-cHHHHHHHHHHHHHcc
Confidence            988 7999999999888754

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=121.37  Aligned_cols=154  Identities=18%  Similarity=0.176  Sum_probs=113.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc---ccccCccceeEEEEEEC-CeEEEEEEcCCC---------hhhHHHHHhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI---VTTTPTIGFNVEAVEYK-NKSFCVWDVGGQ---------NKIRALWRHY   81 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~---------~~~~~~~~~~   81 (181)
                      ..-+.|.++|-.++|||||+|++.+...   .....|+..+.+.+.+. +..+.+-||.|.         +.|++..+ .
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E  268 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE-E  268 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-H
Confidence            3457899999999999999999997663   34567888888888886 589999999993         23333333 3


Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      ..++|.++.|+|+++|.....+.....-+ ..-....+|+|+|+||+|+.....   ........   . . ..+.+||+
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~---~-~-~~v~iSA~  339 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEE---ILAELERG---S-P-NPVFISAK  339 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchh---hhhhhhhc---C-C-CeEEEEec
Confidence            45799999999999996555555444443 333335699999999999876433   11111111   1 1 58999999


Q ss_pred             CCCCHHHHHHHHHhhhh
Q 030233          162 SGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~~  178 (181)
                      +|+|++.|.+.|.+.+.
T Consensus       340 ~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         340 TGEGLDLLRERIIELLS  356 (411)
T ss_pred             cCcCHHHHHHHHHHHhh
Confidence            99999999999998776

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.78  E-value=4.7e-19  Score=118.31  Aligned_cols=128  Identities=30%  Similarity=0.437  Sum_probs=83.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE---CCeEEEEEEcCCChhhHHHHHhh---ccCCCEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY---KNKSFCVWDVGGQNKIRALWRHY---FRDTLGLT   89 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~---~~~~d~ii   89 (181)
                      +.-.|+++|++|+|||+|+.++..+....+...+ ........   ....+.++|+|||++.+......   ...+.++|
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            3467999999999999999999998755444333 22223323   45689999999999988754444   77899999


Q ss_pred             EEEECCC-cccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC
Q 030233           90 FVVDSSD-RERISEARNELHQILSD--NELSNAALLVFANKQDLPNVMPTAEVADKLE  144 (181)
Q Consensus        90 ~v~d~~~-~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~  144 (181)
                      ||+|.+. +..+....+++..++..  .....+|++++.||.|+....+...++..++
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE  138 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE  138 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence            9999973 45566677766666543  1236799999999999987766666666554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.78  E-value=1.2e-18  Score=119.81  Aligned_cols=157  Identities=14%  Similarity=0.169  Sum_probs=96.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccce---eEEEEEE---CCeEEEEEEcCCChhhHH-----HHHhhccC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGF---NVEAVEY---KNKSFCVWDVGGQNKIRA-----LWRHYFRD   84 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~---~~~~~~~---~~~~~~i~d~~g~~~~~~-----~~~~~~~~   84 (181)
                      +++|+++|.+|+|||||+|.+++..... ..++.+.   +.....+   ....+.+|||||......     +....+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            4789999999999999999999865332 2222221   1111111   134789999999643211     12223567


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---------HHHHHhhhCcccc------C
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP---------TAEVADKLELYSL------G  149 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---------~~~~~~~~~~~~~------~  149 (181)
                      +|+++++.+.    ++......+...+..   .+.|+++|+||+|+.....         .+++...+.....      +
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            8998888542    355555544444444   2679999999999853211         1222221111100      1


Q ss_pred             CccEEEEEeecc--CCCCHHHHHHHHHhhhhcc
Q 030233          150 QRRWSIQSCSAI--SGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       150 ~~~~~~~~~Sa~--~~~~i~~l~~~i~~~~~~~  180 (181)
                      ....++|.+|+.  .+.++..+.+.+...+.++
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            233479999998  6799999999999888754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.78  E-value=8.6e-18  Score=116.91  Aligned_cols=108  Identities=18%  Similarity=0.151  Sum_probs=77.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--ccc-----------------ccCccceeEEEEEEC----------CeEEEEEEcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IVT-----------------TTPTIGFNVEAVEYK----------NKSFCVWDVG   69 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~~----------~~~~~i~d~~   69 (181)
                      +|+++|+.++|||||+.+|+...  ...                 ...|+......+.+.          +..+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999997543  110                 011222222122222          6789999999


Q ss_pred             CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      |+++|.......++.+|++++|+|+.+..+.+. ...+.....    .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            999999999999999999999999987654443 223333322    357999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK00049 elongation factor Tu; Reviewed

Probab=99.78  E-value=1.5e-17  Score=125.35  Aligned_cols=159  Identities=19%  Similarity=0.158  Sum_probs=104.8

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-------------------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   74 (181)
                      .+..++|+++|+.++|||||++++++....                   ....|.......+...+..+.+.||||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            356789999999999999999999863110                   1122333333333346778999999999998


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCCC-HH----HHHhhhCcccc
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL-VFANKQDLPNVMP-TA----EVADKLELYSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~-~~----~~~~~~~~~~~  148 (181)
                      .......+..+|++++|+|+.+.-. ....+.+..+..    .+.|.+ +++||+|+.+... .+    ++...+....+
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            8887788899999999999975321 222233333322    257865 6899999874222 11    22222221111


Q ss_pred             CCccEEEEEeeccCCC----------CHHHHHHHHHhhh
Q 030233          149 GQRRWSIQSCSAISGQ----------GLYEGLDWLSNNI  177 (181)
Q Consensus       149 ~~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~  177 (181)
                      ...+++++++||.+|.          ++.++++.|.+.+
T Consensus       164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            2245789999999875          5778888887754

>PLN03126 Elongation factor Tu; Provisional

Probab=99.78  E-value=1.7e-17  Score=126.92  Aligned_cols=146  Identities=20%  Similarity=0.193  Sum_probs=96.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC------cc-------------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE------IV-------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~------~~-------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   74 (181)
                      .+..++|+++|++++|||||+++|++..      ..             ....|.......+...+..+.++|+||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            3457899999999999999999998521      00             0112222333334557889999999999999


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HH----HHHhhhCcccc
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMP-TA----EVADKLELYSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~----~~~~~~~~~~~  148 (181)
                      .......+..+|++++|+|+.+.. .....+.+..+..    .++| +|+++||+|+.+... .+    ++...+....+
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            888888888999999999997542 2222333433322    2566 788999999875221 12    22222222212


Q ss_pred             CCccEEEEEeeccCCC
Q 030233          149 GQRRWSIQSCSAISGQ  164 (181)
Q Consensus       149 ~~~~~~~~~~Sa~~~~  164 (181)
                      ...+++++++||.+|.
T Consensus       233 ~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        233 PGDDIPIISGSALLAL  248 (478)
T ss_pred             CcCcceEEEEEccccc
Confidence            2346889999999885

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.77  E-value=7.2e-17  Score=124.98  Aligned_cols=113  Identities=18%  Similarity=0.211  Sum_probs=81.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc--CCccc-----------------------ccCccceeEEEEEECCeEEEEEEcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL--GEIVT-----------------------TTPTIGFNVEAVEYKNKSFCVWDVGG   70 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~d~~g   70 (181)
                      +.-+|+++|++++|||||.++++.  +....                       ...++......+.+.+..+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            445899999999999999999963  11100                       01122233345667889999999999


Q ss_pred             ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      +.+|.......++.+|++++|+|+++.-.. ....++... ..   .++|+++++||+|+...
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC-RL---RDTPIFTFINKLDRDGR  146 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH-Hh---cCCCEEEEEECCccccc
Confidence            999998888889999999999999864221 223333332 22   47999999999998653

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.77  E-value=1.3e-17  Score=126.02  Aligned_cols=147  Identities=17%  Similarity=0.147  Sum_probs=94.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC--ccc----------------------------------ccCccceeEEEEEECCe
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE--IVT----------------------------------TTPTIGFNVEAVEYKNK   61 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~--~~~----------------------------------~~~~~~~~~~~~~~~~~   61 (181)
                      ++|+++|+.++|||||+.+++...  ...                                  ...|.......+...+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            589999999999999999996432  100                                  01123333444555778


Q ss_pred             EEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHH
Q 030233           62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEV  139 (181)
Q Consensus        62 ~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~  139 (181)
                      .+.++||||+++|.......+..+|++++|+|+...-. ....+.+..+...   ...++++++||+|+.+...  .+++
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHH
Confidence            99999999999998777778889999999999975321 1111112211111   2346899999999865221  1122


Q ss_pred             HhhhCc--cccCCccEEEEEeeccCCCCHHH
Q 030233          140 ADKLEL--YSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       140 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      .+.+..  ......+.+++++||.+|+|+++
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            222210  11122356799999999999985

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.77  E-value=1.8e-17  Score=118.74  Aligned_cols=109  Identities=18%  Similarity=0.146  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      +|+++|++++|||||+++++...  ..                   ....|+......+.+.+..+.++||||+.++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            58999999999999999996421  10                   1122333444556778999999999999999888


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      +...++.+|++++|+|+.+...- .....+..+ ..   .++|+++++||+|+.+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~-~~---~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQA-DR---YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence            99999999999999999764321 122333333 22   4689999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.77  E-value=2e-17  Score=126.02  Aligned_cols=148  Identities=16%  Similarity=0.153  Sum_probs=99.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKN   60 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~   60 (181)
                      +..++++++|+.++|||||+-+++...  ..                                ....|+......+...+
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            457889999999999999999886421  00                                01123334444455578


Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHH-------HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERIS-------EARNELHQILSDNELSNA-ALLVFANKQDLPN  132 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~  132 (181)
                      ..+.++|+||+++|.......+..+|++|+|+|+.+. .|+       ...+.+... ..   .++ ++|+++||+|+..
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT---LGVKQMICCCNKMDATT  159 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH---cCCCcEEEEEEcccCCc
Confidence            8999999999999999999999999999999999852 222       233333322 22   245 5788999999762


Q ss_pred             C-CC-------HHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233          133 V-MP-------TAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus       133 ~-~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      . .+       .+++...+....+...+++|+++||.+|+|+.
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence            1 11       22233332222222335789999999999985

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.77  E-value=1.3e-17  Score=117.92  Aligned_cols=148  Identities=28%  Similarity=0.388  Sum_probs=104.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC-------cccccCccceeEEEEEECCe-EEEEEEcCCChhh----HH---HHHhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE-------IVTTTPTIGFNVEAVEYKNK-SFCVWDVGGQNKI----RA---LWRHYF   82 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~i~d~~g~~~~----~~---~~~~~~   82 (181)
                      ..+.++|-|++|||||++.+....       |++..|.+|    ++.+++. ++.+-|.||--+-    +.   ....-+
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG----~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi  272 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG----TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI  272 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc----eeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence            368999999999999999998765       344455555    4556554 4999999983221    11   233345


Q ss_pred             cCCCEEEEEEECCCc---ccHHHHHHHHHHHHc-CCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhhCccccCCccEEEE
Q 030233           83 RDTLGLTFVVDSSDR---ERISEARNELHQILS-DNELSNAALLVFANKQDLPNVMPT--AEVADKLELYSLGQRRWSIQ  156 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~  156 (181)
                      +.+..++||+|++.+   ..++.+...+.++-. .....+.|.++|+||+|+++.+..  +++.+.+.       +-.++
T Consensus       273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq-------~~~V~  345 (366)
T KOG1489|consen  273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ-------NPHVV  345 (366)
T ss_pred             HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC-------CCcEE
Confidence            578999999999987   667777665555532 345568999999999998642222  33333332       22699


Q ss_pred             EeeccCCCCHHHHHHHHHhh
Q 030233          157 SCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       157 ~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      ++||+.++++.++++.+.+.
T Consensus       346 pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  346 PVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             EeeeccccchHHHHHHHhhc
Confidence            99999999999999887653

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.77  E-value=7.8e-18  Score=129.18  Aligned_cols=151  Identities=16%  Similarity=0.135  Sum_probs=97.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC--ccc------------c----------------------cCccceeEEEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE--IVT------------T----------------------TPTIGFNVEAVEY   58 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~------------~----------------------~~~~~~~~~~~~~   58 (181)
                      +..++|+++|++++|||||+.+++...  ...            .                      ..|+......+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            567999999999999999999997543  110            0                      1122333334455


Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--T  136 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~  136 (181)
                      .+..+.++||||+++|.......+..+|++++|+|+...-.-+ ....+. +....  ...|+|+++||+|+.+...  .
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~-l~~~l--g~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSF-IATLL--GIKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHH-HHHHh--CCCceEEEEEeeccccchhHHH
Confidence            7789999999999998777666778999999999997532111 111111 11111  1247899999999874221  2


Q ss_pred             HHHHhhhCc--cccC-CccEEEEEeeccCCCCHHHH
Q 030233          137 AEVADKLEL--YSLG-QRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus       137 ~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +++...+..  .... ....+++++||++|+|++++
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            222222211  0011 23568999999999999764

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1.2e-17  Score=128.92  Aligned_cols=149  Identities=19%  Similarity=0.186  Sum_probs=103.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-ccc--cCccceeEEEEEECCeEEEEEEcCCCh------hhHHHHHhhc--cC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTT--TPTIGFNVEAVEYKNKSFCVWDVGGQN------KIRALWRHYF--RD   84 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~d~~g~~------~~~~~~~~~~--~~   84 (181)
                      +..+++++|+||+|||||+|+++|... ...  .-|..-....+...+..+++.|.||--      .-+....+++  ..
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            456799999999999999999998652 111  223333344566688889999999921      1122333333  35


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEeec
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      .|+++.|+|++|.+.--.   .-.++++    -+.|+++++|++|..+.    .+.+.+.+.+        +++++++||
T Consensus        82 ~D~ivnVvDAtnLeRnLy---ltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tvA  146 (653)
T COG0370          82 PDLIVNVVDATNLERNLY---LTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTVA  146 (653)
T ss_pred             CCEEEEEcccchHHHHHH---HHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEEe
Confidence            799999999987533111   1222223    37899999999998653    3444455444        457999999


Q ss_pred             cCCCCHHHHHHHHHhhhhc
Q 030233          161 ISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++|+|++++.+.+.+....
T Consensus       147 ~~g~G~~~l~~~i~~~~~~  165 (653)
T COG0370         147 KRGEGLEELKRAIIELAES  165 (653)
T ss_pred             ecCCCHHHHHHHHHHhccc
Confidence            9999999999999875543

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=4.7e-17  Score=109.01  Aligned_cols=161  Identities=24%  Similarity=0.378  Sum_probs=121.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc---CCCEEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR---DTLGLTFVV   92 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~d~ii~v~   92 (181)
                      .+-.|+++|+.+||||+|+-++..+....+.+.+..+...+.+....++++|.|||.+.+.-...++.   .+-++++|+
T Consensus        37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVV  116 (238)
T KOG0090|consen   37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVV  116 (238)
T ss_pred             cCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEE
Confidence            34679999999999999999999888777776666777777777778999999999999887777777   688999999


Q ss_pred             ECCC-cccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc-----------------------
Q 030233           93 DSSD-RERISEARNELHQILSDN--ELSNAALLVFANKQDLPNVMPTAEVADKLELY-----------------------  146 (181)
Q Consensus        93 d~~~-~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----------------------  146 (181)
                      |... ........+++-.++...  ....+|++++.||.|+.-..+.+.++..++.+                       
T Consensus       117 DSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~  196 (238)
T KOG0090|consen  117 DSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDF  196 (238)
T ss_pred             eccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence            9853 334555566665555443  35679999999999997666655544433210                       


Q ss_pred             ------------ccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          147 ------------SLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       147 ------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                                  ......+.|.++|++++ +++++-+|+.+.+
T Consensus       197 tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  197 TLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             cccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                        00114677999999998 9999999998764

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=1.9e-17  Score=124.45  Aligned_cols=161  Identities=20%  Similarity=0.188  Sum_probs=115.2

Q ss_pred             CCCCcc-EEEEEcCCCCChHHHHHhhhcCC--cc----------------cccCccceeEEEEEECC---eEEEEEEcCC
Q 030233           13 FPQCRI-KLLMVGLDASGKTTILYKMKLGE--IV----------------TTTPTIGFNVEAVEYKN---KSFCVWDVGG   70 (181)
Q Consensus        13 ~~~~~~-~i~~~G~~~~GKssl~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~---~~~~i~d~~g   70 (181)
                      .|..++ ++.++-+...|||||..+++...  ..                +...|+-.....+.+.+   ..+.++||||
T Consensus        55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG  134 (650)
T KOG0462|consen   55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG  134 (650)
T ss_pred             CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence            344445 58999999999999999997532  11                11233333333445544   8999999999


Q ss_pred             ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCC
Q 030233           71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQ  150 (181)
Q Consensus        71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~  150 (181)
                      |.+|.......+..|+++++|+|++..-.-+.....+.. ++    .+..+|.|+||+|++.....+.........  ..
T Consensus       135 HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA-fe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF--~~  207 (650)
T KOG0462|consen  135 HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA-FE----AGLAIIPVLNKIDLPSADPERVENQLFELF--DI  207 (650)
T ss_pred             cccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHH-HH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHh--cC
Confidence            999999988899999999999999854333333333333 33    378899999999998754433333332222  44


Q ss_pred             ccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          151 RRWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ...+++.+||++|.|++++++.+.+.+...
T Consensus       208 ~~~~~i~vSAK~G~~v~~lL~AII~rVPpP  237 (650)
T KOG0462|consen  208 PPAEVIYVSAKTGLNVEELLEAIIRRVPPP  237 (650)
T ss_pred             CccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence            555899999999999999999999988754

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.76  E-value=1.3e-17  Score=119.91  Aligned_cols=110  Identities=20%  Similarity=0.249  Sum_probs=81.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--ccc-------------------ccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IVT-------------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      +|+++|++|+|||||+++++...  ...                   ...+.......+.+.+..+.+|||||+.++...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997532  100                   112233344456678899999999999988888


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      +..++..+|++++|+|+++....... ..+..+ ..   .++|.++++||+|....
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~-~~---~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFA-DE---AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHH-HH---cCCCEEEEEECCccCCC
Confidence            88899999999999999875443322 223322 22   36899999999998764

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.76  E-value=2.3e-17  Score=125.70  Aligned_cols=150  Identities=19%  Similarity=0.167  Sum_probs=100.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKN   60 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~   60 (181)
                      ...++|+++|+.++|||||+.+++...  ..                                ....|.......+.+.+
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            457899999999999999999997521  00                                01123334444456678


Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC-
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI---SEARNELHQILSDNELSNAA-LLVFANKQDLPN-  132 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~-  132 (181)
                      ..+.++||||+++|.......+..+|++++|+|+....   .+   ....+.+..+..    .++| +|+++||+|... 
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTV  160 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccc
Confidence            89999999999999988888889999999999997531   11   122233333222    2554 789999999532 


Q ss_pred             ---CCCHHHHHhhh----CccccCCccEEEEEeeccCCCCHHH
Q 030233          133 ---VMPTAEVADKL----ELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       133 ---~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                         +...+++.+.+    ........+++++++||.+|+|+.+
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence               12223333322    2222223468999999999999964

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.76  E-value=3.1e-17  Score=124.83  Aligned_cols=162  Identities=14%  Similarity=0.161  Sum_probs=105.7

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccc------cC--ccceeEEEE-------------EE--------------
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT------TP--TIGFNVEAV-------------EY--------------   58 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~------~~--~~~~~~~~~-------------~~--------------   58 (181)
                      .+..++|+++|+...|||||+..|.+......      ..  .+|+.....             .+              
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            35578999999999999999999997542211      11  122221100             00              


Q ss_pred             ----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233           59 ----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM  134 (181)
Q Consensus        59 ----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  134 (181)
                          ....+.++|+||+++|.......+..+|++++|+|+.+........+.+..+ ...  .-.++|+|+||+|+.+..
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHH
Confidence                1247899999999999888888888999999999998631112222322222 211  235789999999987533


Q ss_pred             CHHHHHhhhCccc--cCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          135 PTAEVADKLELYS--LGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       135 ~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ..++....+....  ......+++++||++|+|+++|++.|.+.+.
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            2222222221100  0124668999999999999999999987654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.75  E-value=3.6e-17  Score=130.00  Aligned_cols=152  Identities=16%  Similarity=0.140  Sum_probs=97.2

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCC--ccc------------c----------------------cCccceeEEEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGE--IVT------------T----------------------TPTIGFNVEAV   56 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~------------~----------------------~~~~~~~~~~~   56 (181)
                      .....++|+++|++++|||||+++++...  ...            .                      ..|.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            44567899999999999999999998643  110            0                      11222223344


Q ss_pred             EECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 030233           57 EYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-  135 (181)
Q Consensus        57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-  135 (181)
                      ...+..+.++||||++++.......+..+|++++|+|+..... ....+.+..+...   ...++++++||+|+.+... 
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~  175 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQE  175 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhH
Confidence            5577889999999999887766677889999999999975321 1111111111111   2367899999999864211 


Q ss_pred             -HHHHHhhhCc--cccCCccEEEEEeeccCCCCHHH
Q 030233          136 -TAEVADKLEL--YSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       136 -~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                       .+++...+..  ........+++++||++|+|+++
T Consensus       176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence             1222222210  11122345799999999999873

>PLN03127 Elongation factor Tu; Provisional

Probab=99.75  E-value=8.2e-17  Score=122.59  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=103.0

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcC------C--cc--c---------ccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLG------E--IV--T---------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~------~--~~--~---------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   74 (181)
                      .+..++|+++|+.++|||||++++.+.      .  ..  .         ...|.......+...+.++.+.||||+++|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            456789999999999999999999632      1  00  0         122333333344446778999999999998


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-HHHH----hhhCcccc
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-AEVA----DKLELYSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-~~~~----~~~~~~~~  148 (181)
                      .......+..+|++++|+|+.+.-. ....+.+..+ ..   .++| +|+++||+|+.+.... +.+.    +.+.....
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            8777777778999999999875321 2222333333 22   3577 5789999998752221 1122    21111111


Q ss_pred             CCccEEEEEeecc---CCCC-------HHHHHHHHHhhhh
Q 030233          149 GQRRWSIQSCSAI---SGQG-------LYEGLDWLSNNIS  178 (181)
Q Consensus       149 ~~~~~~~~~~Sa~---~~~~-------i~~l~~~i~~~~~  178 (181)
                      ....++++++||.   +|.|       +.++++.+.+.+.
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            2235788888876   5555       7888888887653

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.74  E-value=2.4e-16  Score=126.34  Aligned_cols=112  Identities=18%  Similarity=0.115  Sum_probs=82.7

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   74 (181)
                      +--+|+++|++++|||||+++++...  ..                   ....|.......+.+.+..+.+|||||+.++
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            33479999999999999999997422  10                   0122333445567778999999999999998


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      ...+...++.+|++++|+|+.+....+.. ..+..+ ..   .++|+++++||+|+..
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~~---~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-NR---YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-HH---cCCCEEEEEECCCCCC
Confidence            88888999999999999999865433322 233332 22   3689999999999875

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=2e-16  Score=119.19  Aligned_cols=156  Identities=21%  Similarity=0.186  Sum_probs=108.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      .+.+-|+++|+...|||||+..+-+......   ..|--+--+.+..   ....+.+.|||||+.|..++..-..-+|.+
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3567899999999999999999976553321   1222222333444   346899999999999999999888899999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc----CCccEEEEEeeccCCC
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL----GQRRWSIQSCSAISGQ  164 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  164 (181)
                      ++|+|+++.- ..+..+-+....    ..+.|+++++||+|.++.. +..+...+.....    -.....++++||++|+
T Consensus        83 ILVVa~dDGv-~pQTiEAI~hak----~a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          83 ILVVAADDGV-MPQTIEAINHAK----AAGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEEccCCc-chhHHHHHHHHH----HCCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            9999998631 112222222222    2589999999999998533 3333333322221    1235789999999999


Q ss_pred             CHHHHHHHHHhh
Q 030233          165 GLYEGLDWLSNN  176 (181)
Q Consensus       165 ~i~~l~~~i~~~  176 (181)
                      |+++|++.+.-.
T Consensus       157 Gi~eLL~~ill~  168 (509)
T COG0532         157 GIDELLELILLL  168 (509)
T ss_pred             CHHHHHHHHHHH
Confidence            999999987654

>TIGR00503 prfC peptide chain release factor 3

Probab=99.74  E-value=2.5e-16  Score=122.04  Aligned_cols=111  Identities=21%  Similarity=0.250  Sum_probs=80.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc--CCccc-----------------------ccCccceeEEEEEECCeEEEEEEcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL--GEIVT-----------------------TTPTIGFNVEAVEYKNKSFCVWDVGG   70 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~d~~g   70 (181)
                      +.-+|+++|++++|||||+++++.  +....                       ...++......+.+.+..+.+|||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            456899999999999999999853  11110                       01122233345667889999999999


Q ss_pred             ChhhHHHHHhhccCCCEEEEEEECCCcccHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISE-ARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      +.+|.......++.+|++|+|+|+.+.  +.. ...++. ....   .++|+++++||+|+..
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~-~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLME-VTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence            999888777888999999999999763  222 233333 3333   4789999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=1.6e-16  Score=113.15  Aligned_cols=155  Identities=19%  Similarity=0.144  Sum_probs=110.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc--ccc-cCccceeEEEEEECCeEEEEEEcCCCh--------hhHHHHHhhcc-
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI--VTT-TPTIGFNVEAVEYKNKSFCVWDVGGQN--------KIRALWRHYFR-   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~-   83 (181)
                      ..+.|++.|.||||||||++.+.+.+.  ..| ..|.++....+......++++||||--        .-..+...+++ 
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h  246 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH  246 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence            457899999999999999999998773  333 345677888888899999999999921        11122233333 


Q ss_pred             CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233           84 DTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      -.++++|++|.+...  +++.....+..+...   -+.|+++|.||+|.......+++...+..    ........+++.
T Consensus       247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~----~~~~~~~~~~~~  319 (346)
T COG1084         247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLE----EGGEEPLKISAT  319 (346)
T ss_pred             hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHh----hccccccceeee
Confidence            358899999998654  455556667776554   34899999999998875555555544322    223346788889


Q ss_pred             CCCCHHHHHHHHHhhh
Q 030233          162 SGQGLYEGLDWLSNNI  177 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~  177 (181)
                      .+.+++.+-+.+....
T Consensus       320 ~~~~~d~~~~~v~~~a  335 (346)
T COG1084         320 KGCGLDKLREEVRKTA  335 (346)
T ss_pred             ehhhHHHHHHHHHHHh
Confidence            9999998887776653

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=2.1e-16  Score=119.02  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=112.4

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      ...+++-|-++|+...|||||+..|-+.....   ...|-.+--..+.. .+..+++.|||||..|.+++..-..-+|.+
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence            34577889999999999999999997655322   12232233333333 668899999999999999999998899999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc----CCccEEEEEeeccCCC
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL----GQRRWSIQSCSAISGQ  164 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~  164 (181)
                      ++|+.+.|. ...+..+-+..    ....+.|+|+++||+|.+... .+.+.+.+.....    -..+..++++||++|+
T Consensus       229 VLVVAadDG-VmpQT~EaIkh----Ak~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  229 VLVVAADDG-VMPQTLEAIKH----AKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEEEccCC-ccHhHHHHHHH----HHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            999998753 12222232332    223589999999999987544 4444444322211    2257789999999999


Q ss_pred             CHHHHHHHHHhh
Q 030233          165 GLYEGLDWLSNN  176 (181)
Q Consensus       165 ~i~~l~~~i~~~  176 (181)
                      |++.|-+.+.-.
T Consensus       303 nl~~L~eaill~  314 (683)
T KOG1145|consen  303 NLDLLEEAILLL  314 (683)
T ss_pred             ChHHHHHHHHHH
Confidence            999999987654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.73  E-value=3.6e-16  Score=98.72  Aligned_cols=103  Identities=20%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccc----cCccceeEEEEEECCeEEEEEEcCCChh---------hHHHHHhhccCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTT----TPTIGFNVEAVEYKNKSFCVWDVGGQNK---------IRALWRHYFRDT   85 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~~   85 (181)
                      +|+++|.+|+|||||+|++++......    ..|.......+.+.+..+.++||||-..         ........+..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS   80 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence            689999999999999999998653222    2233334445667889999999999422         111233444789


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK  127 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK  127 (181)
                      |++++|+|+.++.. +.....+..+ +    .+.|+++|+||
T Consensus        81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK  116 (116)
T PF01926_consen   81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK  116 (116)
T ss_dssp             SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred             CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence            99999999876321 2222333333 2    47999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK12739 elongation factor G; Reviewed

Probab=99.72  E-value=4e-16  Score=125.05  Aligned_cols=114  Identities=18%  Similarity=0.107  Sum_probs=83.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC-----c----------------ccccCccceeEEEEEECCeEEEEEEcCCCh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE-----I----------------VTTTPTIGFNVEAVEYKNKSFCVWDVGGQN   72 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~-----~----------------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   72 (181)
                      +.+..+|+++|++++|||||+++++...     .                .....|+......+.+.+..+.++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            3455679999999999999999997421     0                011234444555677789999999999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      ++...+...++.+|++++|+|+.+.-.-+ ....+..+ ..   .+.|+++++||+|+..
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~q-t~~i~~~~-~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQ-SETVWRQA-DK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence            98888889999999999999997643222 12233333 22   3689999999999875

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=5.4e-17  Score=113.03  Aligned_cols=164  Identities=18%  Similarity=0.261  Sum_probs=110.8

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCc-cceeEEEEEECCeEEEEEEcCCChh-------hHHHHHh
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPT-IGFNVEAVEYKNKSFCVWDVGGQNK-------IRALWRH   80 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~   80 (181)
                      .....+++++++|..|+||||++|+++.+...+.   ..+ ...+.....+....+.+||+||.++       +++....
T Consensus        34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence            3456789999999999999999999997653322   222 2233444556778999999999554       7777888


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC---------CHHHHHhhhC-----cc
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM---------PTAEVADKLE-----LY  146 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---------~~~~~~~~~~-----~~  146 (181)
                      ++...|.+++++++.+++--... ..+..+....  .+.++++++|++|.....         ....+....+     ..
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~  190 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG  190 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence            88999999999999877422112 2233332221  248999999999976531         1111111111     01


Q ss_pred             ccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      .....-.+++..|...+.|++++...+...+.
T Consensus       191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         191 RLFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             HHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence            11223447888889999999999999988765

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.72  E-value=2.2e-16  Score=112.13  Aligned_cols=151  Identities=21%  Similarity=0.196  Sum_probs=102.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC--ccccc-CccceeEEEEEECCeEEEEEEcCCChhh-------HHHHHhhccCCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE--IVTTT-PTIGFNVEAVEYKNKSFCVWDVGGQNKI-------RALWRHYFRDTL   86 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~d   86 (181)
                      .-+++++|.|++|||||++.+.+..  ...+. .|....-..+.+.+.++++.|+||--..       ........+.||
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD  142 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD  142 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence            4689999999999999999998865  22222 2222333347889999999999972211       234556778999


Q ss_pred             EEEEEEECCCccc-HHHHHHHHHHHH-c-CCCCC----------------------------------------------
Q 030233           87 GLTFVVDSSDRER-ISEARNELHQIL-S-DNELS----------------------------------------------  117 (181)
Q Consensus        87 ~ii~v~d~~~~~s-~~~~~~~~~~~~-~-~~~~~----------------------------------------------  117 (181)
                      .+++|+|+..... .+.+...++..= . ....+                                              
T Consensus       143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~  222 (365)
T COG1163         143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE  222 (365)
T ss_pred             EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence            9999999986543 333333222210 0 00000                                              


Q ss_pred             ----------------CCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          118 ----------------NAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       118 ----------------~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                                      -+|.++|.||.|+......+.+.+..          .++.+||..+.|++++.+.|.+.+
T Consensus       223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhh
Confidence                            12999999999988733333333322          589999999999999999998875

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.72  E-value=5e-16  Score=113.31  Aligned_cols=154  Identities=23%  Similarity=0.263  Sum_probs=97.5

Q ss_pred             EEEEcCCCCChHHHHHhhhcCCc-------ccccCccceeEEEE-------------------E-ECCeEEEEEEcCCC-
Q 030233           20 LLMVGLDASGKTTILYKMKLGEI-------VTTTPTIGFNVEAV-------------------E-YKNKSFCVWDVGGQ-   71 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~~-------~~~~~~~~~~~~~~-------------------~-~~~~~~~i~d~~g~-   71 (181)
                      |+++|.+++|||||+|++.+...       .+..|+.|......                   . .....+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998762       23345555443211                   0 13367999999996 


Q ss_pred             ---hhhHHHHHh---hccCCCEEEEEEECCCc-------------c---cHHHHH----HH-------------------
Q 030233           72 ---NKIRALWRH---YFRDTLGLTFVVDSSDR-------------E---RISEAR----NE-------------------  106 (181)
Q Consensus        72 ---~~~~~~~~~---~~~~~d~ii~v~d~~~~-------------~---s~~~~~----~~-------------------  106 (181)
                         +++..+...   .++++|++++|+|+...             +   .++.+.    .|                   
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               444444333   58899999999999731             0   111111    10                   


Q ss_pred             ---------------------HHHHHcC-C--------------------CCCCCeEEEEEeCCCCCCCCCHHHHHhhhC
Q 030233          107 ---------------------LHQILSD-N--------------------ELSNAALLVFANKQDLPNVMPTAEVADKLE  144 (181)
Q Consensus       107 ---------------------~~~~~~~-~--------------------~~~~~piilv~nK~D~~~~~~~~~~~~~~~  144 (181)
                                           +..+++. .                    .....|+|+++||.|+...   ++..+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~  237 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR  237 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence                                 0001100 0                    1234699999999997532   22222221


Q ss_pred             ccccCCccEEEEEeeccCCCCHHHHHH-HHHhhhhc
Q 030233          145 LYSLGQRRWSIQSCSAISGQGLYEGLD-WLSNNISV  179 (181)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~i~~~~~~  179 (181)
                      .   ......++.+||+.+.+++++.+ .+.+.+.+
T Consensus       238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe  270 (318)
T cd01899         238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG  270 (318)
T ss_pred             h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence            1   12244799999999999999998 69888754

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.71  E-value=2.5e-19  Score=117.13  Aligned_cols=157  Identities=18%  Similarity=0.240  Sum_probs=122.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ++++|+|.-++|||+++.+++...+. .+..|+|....  ...+   .-.++++||.+|++++..+..-+++.+++..+|
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV  105 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV  105 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence            68999999999999999999987754 45677775433  3344   335789999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCCCHH---HHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           92 VDSSDRERISEARNELHQILSD---NELSNAALLVFANKQDLPNVMPTA---EVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      ||+++..+|+....|...+...   ......|+++..||||.......+   .+.....    .......+++|++.+.|
T Consensus       106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----engf~gwtets~Kenkn  181 (229)
T KOG4423|consen  106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----ENGFEGWTETSAKENKN  181 (229)
T ss_pred             EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----ccCccceeeeccccccC
Confidence            9999999999999999988654   333447899999999986533222   2333222    22333689999999999


Q ss_pred             HHHHHHHHHhhhh
Q 030233          166 LYEGLDWLSNNIS  178 (181)
Q Consensus       166 i~~l~~~i~~~~~  178 (181)
                      ++|.-+.+.+++.
T Consensus       182 i~Ea~r~lVe~~l  194 (229)
T KOG4423|consen  182 IPEAQRELVEKIL  194 (229)
T ss_pred             hhHHHHHHHHHHH
Confidence            9999999988764

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=3.5e-16  Score=116.47  Aligned_cols=163  Identities=20%  Similarity=0.226  Sum_probs=110.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE----EEECCeEEEEEEcCCChh--------h-HHHHHhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQNK--------I-RALWRHY   81 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~d~~g~~~--------~-~~~~~~~   81 (181)
                      +..++|+++|+||+|||||+|.+.+.+..-.+|-.|++.+.    ++..+..+.+.||+|-.+        . -......
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            35689999999999999999999999987777877777664    556899999999999433        1 1124456


Q ss_pred             ccCCCEEEEEEEC--CCcccHHHHHHHHHHHHcC-----CCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccE
Q 030233           82 FRDTLGLTFVVDS--SDRERISEARNELHQILSD-----NELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRW  153 (181)
Q Consensus        82 ~~~~d~ii~v~d~--~~~~s~~~~~~~~~~~~~~-----~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~  153 (181)
                      ++.+|++++|+|+  ++-++-..+...+...-..     +...+.|++++.||.|+....+ .......+... ......
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~  424 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF  424 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence            6789999999999  3333333434444333211     1124578999999999876411 11100011011 111222


Q ss_pred             -EEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          154 -SIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       154 -~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                       ...++|+++++|++.|.+.+.+.+.
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHH
Confidence             4566999999999999998877643

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.71  E-value=9e-16  Score=105.55  Aligned_cols=155  Identities=14%  Similarity=0.089  Sum_probs=97.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEECCeEEEEEEcCCChhh-------HHH----HHhh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEYKNKSFCVWDVGGQNKI-------RAL----WRHY   81 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-------~~~----~~~~   81 (181)
                      ++|+++|.+|+|||||+|++++......     ..|.........+.+..+.++||||..+.       ...    ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999999873221     23444455556668889999999994332       111    2223


Q ss_pred             ccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHH--------HhhhCccccCCcc
Q 030233           82 FRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEV--------ADKLELYSLGQRR  152 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--------~~~~~~~~~~~~~  152 (181)
                      ..++|++++|+++.+.. ......+++..+....  .-.++++++|++|.....+.++.        ......     ++
T Consensus        81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~-----c~  153 (196)
T cd01852          81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK-----CG  153 (196)
T ss_pred             CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH-----hC
Confidence            45789999999987621 1122223333332211  12578999999998765433332        222211     11


Q ss_pred             EEEEEe-----eccCCCCHHHHHHHHHhhhhc
Q 030233          153 WSIQSC-----SAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       153 ~~~~~~-----Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      -.++..     |+..+.++++|++.+.+.+.+
T Consensus       154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            123222     366788999999999988775

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK00007 elongation factor G; Reviewed

Probab=99.70  E-value=1.2e-15  Score=122.26  Aligned_cols=112  Identities=16%  Similarity=0.081  Sum_probs=80.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECCeEEEEEEcCCChhh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~   74 (181)
                      +--+|+++|++++|||||+++++...  ..                   ....|.......+.+.+..+.++||||+.++
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f   88 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF   88 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence            34589999999999999999997311  10                   1122333444556778999999999999988


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      .......+..+|++++|+|+...-.-+ ....+..+..    .++|+++++||+|+.+
T Consensus        89 ~~ev~~al~~~D~~vlVvda~~g~~~q-t~~~~~~~~~----~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         89 TIEVERSLRVLDGAVAVFDAVGGVEPQ-SETVWRQADK----YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHHHHHHHcCEEEEEEECCCCcchh-hHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            888888889999999999987542222 2223333322    3688999999999875

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.70  E-value=2.7e-16  Score=112.49  Aligned_cols=156  Identities=24%  Similarity=0.215  Sum_probs=102.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC-------cccccCccceeEEEEEECCeEEEEEEcCCChhhH-------HHHHhhccC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE-------IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR-------ALWRHYFRD   84 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~   84 (181)
                      .|.++|-|++|||||++.+....       |++..|.+|+-..   .....|.+-|.||--+-.       ......++.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            57899999999999999998755       4445566665433   366679999999832211       112234456


Q ss_pred             CCEEEEEEECCCccc---HHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEee
Q 030233           85 TLGLTFVVDSSDRER---ISEARNELHQILSD-NELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      +-++++|+|++..+.   .+.+.....++... ....+.|.++|+||+|+... +..+.+.+.+...  ..+...++ +|
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~--~~~~~~~~-IS  314 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA--LGWEVFYL-IS  314 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh--cCCCccee-ee
Confidence            899999999985443   44444444333222 34467899999999996542 3333444444321  11221233 99


Q ss_pred             ccCCCCHHHHHHHHHhhhhcc
Q 030233          160 AISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (181)
                      |.+++|++++...+.+.+.+.
T Consensus       315 a~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         315 ALTREGLDELLRALAELLEET  335 (369)
T ss_pred             hhcccCHHHHHHHHHHHHHHh
Confidence            999999999999998877653

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.69  E-value=4.1e-16  Score=115.76  Aligned_cols=161  Identities=19%  Similarity=0.200  Sum_probs=113.1

Q ss_pred             CCCCcc-EEEEEcCCCCChHHHHHhhhcCC--cc----------------cccCccceeEEEEEE-----CCeEEEEEEc
Q 030233           13 FPQCRI-KLLMVGLDASGKTTILYKMKLGE--IV----------------TTTPTIGFNVEAVEY-----KNKSFCVWDV   68 (181)
Q Consensus        13 ~~~~~~-~i~~~G~~~~GKssl~~~~~~~~--~~----------------~~~~~~~~~~~~~~~-----~~~~~~i~d~   68 (181)
                      .+++++ +.+++-+-..|||||..|+....  ..                +...|+-.....+.+     +.+.++++||
T Consensus         4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT   83 (603)
T COG0481           4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT   83 (603)
T ss_pred             cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence            344455 47899999999999999997532  10                112233323333333     4588999999


Q ss_pred             CCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc
Q 030233           69 GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL  148 (181)
Q Consensus        69 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~  148 (181)
                      |||.+|.-.....+..|.+.++|+|++..-.-+.+...+..+ .    .+.-+|.|+||+|++.....+...+.....  
T Consensus        84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~Adpervk~eIe~~i--  156 (603)
T COG0481          84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAADPERVKQEIEDII--  156 (603)
T ss_pred             CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCCCHHHHHHHHHHHh--
Confidence            999988777777777899999999998654445555555554 2    368899999999998754443333333222  


Q ss_pred             CCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          149 GQRRWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +......+.+||++|.||+++++.|.+++...
T Consensus       157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P  188 (603)
T COG0481         157 GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP  188 (603)
T ss_pred             CCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence            33334689999999999999999999988753

>cd01850 CDC_Septin CDC/Septin

Probab=99.68  E-value=3.1e-16  Score=112.78  Aligned_cols=139  Identities=12%  Similarity=0.157  Sum_probs=80.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccc-----------cCccceeEEEE--EECC--eEEEEEEcCCChhhH-----
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-----------TPTIGFNVEAV--EYKN--KSFCVWDVGGQNKIR-----   75 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~--~~~~i~d~~g~~~~~-----   75 (181)
                      ..++|+++|.+|+|||||+|++++......           .+|........  ...+  ..+.+|||||..+..     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999998874332           23333333322  2233  579999999932211     


Q ss_pred             -------------H---HHH-----hhcc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           76 -------------A---LWR-----HYFR--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        76 -------------~---~~~-----~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                                   .   ...     ..+.  .+|+++|+++.+. ..+......+...+..    .+|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLSK----RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHhc----cCCEEEEEECCCcCC
Confidence                         0   000     1222  3688888888764 2333332222222222    589999999999976


Q ss_pred             CCCHHHHHhhhCccccCCccEEEEEeec
Q 030233          133 VMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      ............ ..+...++++|.+..
T Consensus       158 ~~e~~~~k~~i~-~~l~~~~i~~~~~~~  184 (276)
T cd01850         158 PEELKEFKQRIM-EDIEEHNIKIYKFPE  184 (276)
T ss_pred             HHHHHHHHHHHH-HHHHHcCCceECCCC
Confidence            333333333221 112334455666554

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK12740 elongation factor G; Reviewed

Probab=99.68  E-value=3.4e-15  Score=119.70  Aligned_cols=106  Identities=19%  Similarity=0.152  Sum_probs=78.8

Q ss_pred             EcCCCCChHHHHHhhhcCCc--c-------------------cccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh
Q 030233           23 VGLDASGKTTILYKMKLGEI--V-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY   81 (181)
Q Consensus        23 ~G~~~~GKssl~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~   81 (181)
                      +|++++|||||+++++...-  .                   ....|++.....+.+.+..+.+|||||+.++...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            59999999999999954320  0                   12334455556677789999999999999888888888


Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      +..+|++++|+|+++....... ..+..+..    .++|+++++||+|....
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            9999999999999876544333 22333322    36899999999998753

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=3.8e-16  Score=114.29  Aligned_cols=149  Identities=19%  Similarity=0.222  Sum_probs=102.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKN   60 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~   60 (181)
                      +..++++++|+..+|||||+-+|+...  ..                                +...|+......++.+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            457899999999999999999986421  00                                11224445555566678


Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH-----HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI-----SEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~-----~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      ..+.|+|+||+.+|-.....-..++|+.|+|+|+.+.+   +|     ......+...+     .-..+|+++||+|+.+
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~~lIVavNKMD~v~  159 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIKQLIVAVNKMDLVS  159 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCceEEEEEEcccccc
Confidence            89999999999999988888889999999999998653   22     12222222222     3456899999999976


Q ss_pred             CC--CHHHHHhhh----CccccCCccEEEEEeeccCCCCHHH
Q 030233          133 VM--PTAEVADKL----ELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       133 ~~--~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      -.  ..+++...+    ....+...+++|+++|+..|.|+.+
T Consensus       160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            21  122222222    2222344468899999999999865

>cd00066 G-alpha G protein alpha subunit

Probab=99.67  E-value=2.3e-15  Score=110.37  Aligned_cols=133  Identities=26%  Similarity=0.315  Sum_probs=101.6

Q ss_pred             ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCCC
Q 030233           48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR----------ERISEARNELHQILSDNELS  117 (181)
Q Consensus        48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~  117 (181)
                      |.|+....+.+.+..+.+||++|+...+..|..++.+++++++|+|+++.          ..+.+....+..++......
T Consensus       148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~  227 (317)
T cd00066         148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA  227 (317)
T ss_pred             cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence            44666666777889999999999999999999999999999999999863          46777788888888887778


Q ss_pred             CCeEEEEEeCCCCCCC------------------CCHHHHHhhhCccc-----cCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233          118 NAALLVFANKQDLPNV------------------MPTAEVADKLELYS-----LGQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus       118 ~~piilv~nK~D~~~~------------------~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      +.|+++++||.|+..+                  .+.+.....+....     ...+.+.+..++|.+.++++.+|+.+.
T Consensus       228 ~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~  307 (317)
T cd00066         228 NTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVK  307 (317)
T ss_pred             CCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHH
Confidence            9999999999996431                  11222222111110     013566778899999999999999998


Q ss_pred             hhhhcc
Q 030233          175 NNISVK  180 (181)
Q Consensus       175 ~~~~~~  180 (181)
                      +.+.++
T Consensus       308 ~~i~~~  313 (317)
T cd00066         308 DIILQN  313 (317)
T ss_pred             HHHHHH
Confidence            877654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00275 G_alpha G protein alpha subunit

Probab=99.67  E-value=2.6e-15  Score=110.89  Aligned_cols=133  Identities=23%  Similarity=0.307  Sum_probs=100.8

Q ss_pred             ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCCC
Q 030233           48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR----------ERISEARNELHQILSDNELS  117 (181)
Q Consensus        48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~  117 (181)
                      |.|+....+.+.+..+.+||++|+...+..|..++.+++++++|+|+++-          ..+.+....+..+++.....
T Consensus       171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~  250 (342)
T smart00275      171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA  250 (342)
T ss_pred             ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence            44556666777888999999999999999999999999999999999863          35778888889998887778


Q ss_pred             CCeEEEEEeCCCCCCC-----------------CCHHHHHhhhC----cccc--CCccEEEEEeeccCCCCHHHHHHHHH
Q 030233          118 NAALLVFANKQDLPNV-----------------MPTAEVADKLE----LYSL--GQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus       118 ~~piilv~nK~D~~~~-----------------~~~~~~~~~~~----~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      +.|+++++||.|+..+                 .+.+...+.+.    ....  ..+.+.++.++|.+-.++..+|+.+.
T Consensus       251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~  330 (342)
T smart00275      251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK  330 (342)
T ss_pred             CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence            9999999999997431                 11112111111    1110  12456778899999999999999988


Q ss_pred             hhhhcc
Q 030233          175 NNISVK  180 (181)
Q Consensus       175 ~~~~~~  180 (181)
                      +.+.++
T Consensus       331 ~~I~~~  336 (342)
T smart00275      331 DIILQR  336 (342)
T ss_pred             HHHHHH
Confidence            776653

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK09866 hypothetical protein; Provisional

Probab=99.66  E-value=7.4e-15  Score=113.64  Aligned_cols=113  Identities=18%  Similarity=0.171  Sum_probs=74.0

Q ss_pred             eEEEEEEcCCChh-----hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233           61 KSFCVWDVGGQNK-----IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP  135 (181)
Q Consensus        61 ~~~~i~d~~g~~~-----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  135 (181)
                      .++.+.||||-..     ........+..+|++++|+|+...-+...  ..+...+.... ...|+++|+||+|+.+..+
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence            5688999999543     23334457889999999999976433322  23333333311 1369999999999864322


Q ss_pred             --HHHHHhhhCcc--ccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          136 --TAEVADKLELY--SLGQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       136 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                        .+.+...+...  ........++++||++|.|++.+++.|.+.
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence              34444443211  112234479999999999999999999873

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.64  E-value=2.6e-15  Score=111.31  Aligned_cols=157  Identities=20%  Similarity=0.248  Sum_probs=119.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--cccc-----------------cCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IVTT-----------------TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   79 (181)
                      +|+++-+...|||||+..++.++  |...                 ..|+-.....+.|.+..+.|.|||||.+|....+
T Consensus         7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE   86 (603)
T COG1217           7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE   86 (603)
T ss_pred             eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence            58999999999999999998765  2211                 1122223334677899999999999999999999


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc-----cCCccEE
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS-----LGQRRWS  154 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~  154 (181)
                      ..+...|++++++|+.+ -.+.+.+....+.+..    +.+.|+|+||+|.+.....+.+.+.+.+..     -.+.+.+
T Consensus        87 Rvl~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          87 RVLSMVDGVLLLVDASE-GPMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhcceEEEEEEccc-CCCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            99999999999999984 3455666666676665    788899999999988666655555443321     1345778


Q ss_pred             EEEeeccCCC----------CHHHHHHHHHhhhhcc
Q 030233          155 IQSCSAISGQ----------GLYEGLDWLSNNISVK  180 (181)
Q Consensus       155 ~~~~Sa~~~~----------~i~~l~~~i~~~~~~~  180 (181)
                      ++..|+..|.          ++..||+.|.+.+...
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P  197 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAP  197 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence            9999998764          8999999999887653

>PRK13768 GTPase; Provisional

Probab=99.63  E-value=1.7e-15  Score=107.83  Aligned_cols=117  Identities=17%  Similarity=0.104  Sum_probs=73.6

Q ss_pred             eEEEEEEcCCChhhH---HHHHhhc---cC--CCEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           61 KSFCVWDVGGQNKIR---ALWRHYF---RD--TLGLTFVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~---~~~~~~~---~~--~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      ..+.+||+||+.+..   ..+..++   ..  .+++++++|+......... ..++....... ..+.|+++|+||+|+.
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL  175 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence            479999999976532   2232222   22  8999999999654333222 22222211100 1478999999999998


Q ss_pred             CCCCHHHHHhhhCc--------c---------------ccC--CccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          132 NVMPTAEVADKLEL--------Y---------------SLG--QRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       132 ~~~~~~~~~~~~~~--------~---------------~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      +....+...+.+..        .               .+.  ....+++++|+++++|+++++++|.+.+.
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            76555444443321        0               000  12347899999999999999999988764

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.61  E-value=3.2e-14  Score=106.81  Aligned_cols=78  Identities=28%  Similarity=0.359  Sum_probs=53.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc--c-----cCccceeEEEEE--------------------ECCeEEEEEEcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT--T-----TPTIGFNVEAVE--------------------YKNKSFCVWDVGG   70 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~--~-----~~~~~~~~~~~~--------------------~~~~~~~i~d~~g   70 (181)
                      ++|+++|.|++|||||+|++.+.....  +     .|+.|.......                    .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            589999999999999999999876321  1     344443221100                    2336789999999


Q ss_pred             C----hhhHHHHHh---hccCCCEEEEEEECC
Q 030233           71 Q----NKIRALWRH---YFRDTLGLTFVVDSS   95 (181)
Q Consensus        71 ~----~~~~~~~~~---~~~~~d~ii~v~d~~   95 (181)
                      .    .....+...   .++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            3    333333333   478999999999996

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.60  E-value=4.3e-15  Score=91.39  Aligned_cols=138  Identities=21%  Similarity=0.204  Sum_probs=92.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCC----ChhhHHHHHhhccCCCEEEEEEEC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGG----QNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g----~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      |++++|..|+|||||.+++-|..... .-|-.     +++.+  --.+||||    +..+..-......++|++++|-++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~ly-kKTQA-----ve~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a   74 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLY-KKTQA-----VEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA   74 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhh-cccce-----eeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence            68999999999999999998775321 11111     11111  12469999    233333344455789999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      +++++--  ..-+..+      ...|+|-+++|.|+.+..+.+-.+..+....    .-++|++|+.++.|++++++.|.
T Consensus        75 nd~~s~f--~p~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L~  142 (148)
T COG4917          75 NDPESRF--PPGFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYLA  142 (148)
T ss_pred             cCccccC--Ccccccc------cccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHHH
Confidence            8875421  1111111      3456999999999997666666666554332    23699999999999999999886


Q ss_pred             hh
Q 030233          175 NN  176 (181)
Q Consensus       175 ~~  176 (181)
                      ..
T Consensus       143 ~~  144 (148)
T COG4917         143 SL  144 (148)
T ss_pred             hh
Confidence            53

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.59  E-value=6.4e-15  Score=102.64  Aligned_cols=166  Identities=17%  Similarity=0.186  Sum_probs=104.4

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcCC----cccccC---------ccceeEE---EEE-----------------
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGE----IVTTTP---------TIGFNVE---AVE-----------------   57 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~----~~~~~~---------~~~~~~~---~~~-----------------   57 (181)
                      +...+++.-|+++|..|||||||+.|+...-    .+.+..         +.+.+..   +++                 
T Consensus        13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~   92 (366)
T KOG1532|consen   13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV   92 (366)
T ss_pred             cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence            3456778899999999999999999996532    222111         0000000   000                 


Q ss_pred             --------------------ECCeEEEEEEcCCChhh------HHHHHhhc--cCCCEEEEEEECCC---cccHHHHHHH
Q 030233           58 --------------------YKNKSFCVWDVGGQNKI------RALWRHYF--RDTLGLTFVVDSSD---RERISEARNE  106 (181)
Q Consensus        58 --------------------~~~~~~~i~d~~g~~~~------~~~~~~~~--~~~d~ii~v~d~~~---~~s~~~~~~~  106 (181)
                                          .......++||||+-.-      ..++...+  ....+++||+|...   +.+|=.-..+
T Consensus        93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY  172 (366)
T KOG1532|consen   93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY  172 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence                                03356899999996431      12222222  23578889999853   4555555555


Q ss_pred             HHHHHcCCCCCCCeEEEEEeCCCCCCCCC-------HHHHHhhhCc--ccc--------------CCccEEEEEeeccCC
Q 030233          107 LHQILSDNELSNAALLVFANKQDLPNVMP-------TAEVADKLEL--YSL--------------GQRRWSIQSCSAISG  163 (181)
Q Consensus       107 ~~~~~~~~~~~~~piilv~nK~D~~~~~~-------~~~~~~~~~~--~~~--------------~~~~~~~~~~Sa~~~  163 (181)
                      .-.++..   .+.|.|++.||+|+....-       .+.+.+.+..  ..+              -..++..+-+|+.+|
T Consensus       173 AcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG  249 (366)
T KOG1532|consen  173 ACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG  249 (366)
T ss_pred             HHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence            5556555   6899999999999976432       2333333321  000              114678999999999


Q ss_pred             CCHHHHHHHHHhhhhc
Q 030233          164 QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (181)
                      .|.+++|..+.+.+.+
T Consensus       250 ~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  250 EGFDDFFTAVDESVDE  265 (366)
T ss_pred             CcHHHHHHHHHHHHHH
Confidence            9999999999887654

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.58  E-value=2.8e-14  Score=102.63  Aligned_cols=146  Identities=16%  Similarity=0.183  Sum_probs=104.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc------------------------------------cccCccceeEEEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV------------------------------------TTTPTIGFNVEAVEY   58 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~   58 (181)
                      +..++++.+|...-||||||-|++.....                                    +...|+++.++.+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            34679999999999999999999763200                                    123466666666767


Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHH---HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEAR---NELHQILSDNELSNAALLVFANKQDLPNVMP  135 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  135 (181)
                      ...+|.+-|||||++|-...-.-...||..|+++|+-  ..+.+..   .++..++.     -..+++++||+|+.+..+
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~e  156 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYSE  156 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC-----CcEEEEEEeeecccccCH
Confidence            8899999999999999998888888999999999994  4443322   23444443     356899999999986332


Q ss_pred             --HHHHHhhhCc--cccCCccEEEEEeeccCCCCHH
Q 030233          136 --TAEVADKLEL--YSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus       136 --~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                        .+.+...+..  ..++.....++++||..|.|+-
T Consensus       157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence              2333333321  1123445589999999999874

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.56  E-value=2.6e-14  Score=104.54  Aligned_cols=108  Identities=15%  Similarity=0.131  Sum_probs=69.4

Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE  138 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  138 (181)
                      .+..+.++||+|.......   ....+|.++++.+....+.++....   .+++.      .-++|+||+|+........
T Consensus       147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~------aDIiVVNKaDl~~~~~a~~  214 (332)
T PRK09435        147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIMEL------ADLIVINKADGDNKTAARR  214 (332)
T ss_pred             cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhhh------hheEEeehhcccchhHHHH
Confidence            3578999999996643322   4556999999987544444443322   22222      2389999999876443322


Q ss_pred             ----HHhhhCccccC--CccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          139 ----VADKLELYSLG--QRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       139 ----~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                          +...+......  .+..+++.+||++|+|++++++.+.+...
T Consensus       215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence                33333221111  23347999999999999999999988643

>cd01882 BMS1 Bms1

Probab=99.55  E-value=1.3e-13  Score=96.55  Aligned_cols=140  Identities=14%  Similarity=0.058  Sum_probs=84.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      ....|+++|.+|+|||||++.+++... .......|. .......+..+.++||||..  .. .....+.+|++++|+|+
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllviDa  113 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLLLIDA  113 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HH-HHHHHHhcCEEEEEEec
Confidence            456799999999999999999987531 111122221 11223367889999999854  22 23345789999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HHHHHhhhCcccc--CCccEEEEEeeccCCC
Q 030233           95 SDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMP-TAEVADKLELYSL--GQRRWSIQSCSAISGQ  164 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~  164 (181)
                      ......  ....+...+..   .+.| +++|+||+|+.+... .+++.+.+.....  .....+++.+||+++-
T Consensus       114 ~~~~~~--~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         114 SFGFEM--ETFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             CcCCCH--HHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            754322  22223333332   2456 456999999874321 2232222211110  1134589999999864

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.54  E-value=3.8e-14  Score=114.16  Aligned_cols=112  Identities=21%  Similarity=0.112  Sum_probs=78.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC---------------Cccc----ccCccceeEE----EEEECCeEEEEEEcCCCh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG---------------EIVT----TTPTIGFNVE----AVEYKNKSFCVWDVGGQN   72 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~---------------~~~~----~~~~~~~~~~----~~~~~~~~~~i~d~~g~~   72 (181)
                      +.-+|+++|+.++|||||+++++..               ++..    ...|+.....    .+...+..+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            4458999999999999999999742               1111    1223332221    134477899999999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      ++.......++.+|++++|+|+.+.-..+. ...+.....    .+.|+++++||+|...
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence            998888889999999999999975321111 122222222    3578889999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.54  E-value=1.3e-13  Score=100.40  Aligned_cols=133  Identities=24%  Similarity=0.352  Sum_probs=102.5

Q ss_pred             ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc----------cHHHHHHHHHHHHcCCCCC
Q 030233           48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE----------RISEARNELHQILSDNELS  117 (181)
Q Consensus        48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~  117 (181)
                      |.|+....+.+.+..+.++|++|+..-+.-|...+.+++++++|+++++.+          .+.+....+..+.++.+..
T Consensus       182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~  261 (354)
T KOG0082|consen  182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA  261 (354)
T ss_pred             cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence            667777788889999999999999998899999999999999999998532          4556677889999999999


Q ss_pred             CCeEEEEEeCCCCCCCC-----------------CHHHHHhhhC----cccc-CCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233          118 NAALLVFANKQDLPNVM-----------------PTAEVADKLE----LYSL-GQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus       118 ~~piilv~nK~D~~~~~-----------------~~~~~~~~~~----~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      +.++|+++||.|+..+.                 ..++....+.    .... ..+.+.+..+.|.+-.+|+.+|+.+.+
T Consensus       262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d  341 (354)
T KOG0082|consen  262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD  341 (354)
T ss_pred             cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence            99999999999985421                 1112111111    1111 225666778899999999999999988


Q ss_pred             hhhcc
Q 030233          176 NISVK  180 (181)
Q Consensus       176 ~~~~~  180 (181)
                      .+.+.
T Consensus       342 ~Ii~~  346 (354)
T KOG0082|consen  342 TIIQN  346 (354)
T ss_pred             HHHHH
Confidence            77654

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.54  E-value=2.8e-13  Score=111.23  Aligned_cols=141  Identities=23%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             CChHHHHHhhhcCCcccc-----cCccceeEEEEEE----------------CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233           28 SGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEY----------------KNKSFCVWDVGGQNKIRALWRHYFRDTL   86 (181)
Q Consensus        28 ~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------~~~~~~i~d~~g~~~~~~~~~~~~~~~d   86 (181)
                      ++||||+.++-+.+.+..     ..-+|........                ..-.+.+|||||++.+..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            459999999987664321     1122222221110                1113899999999999988888888999


Q ss_pred             EEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------HHHHHhh-------
Q 030233           87 GLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--------------TAEVADK-------  142 (181)
Q Consensus        87 ~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~~~~~-------  142 (181)
                      ++++|+|+++   +.++..+    . .+..   .++|+++++||+|+.....              .+.....       
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I----~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~  623 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAI----N-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE  623 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHH----H-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999986   3333322    2 2222   3689999999999854211              0111110       


Q ss_pred             ----hCcccc----------CCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          143 ----LELYSL----------GQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       143 ----~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                          +.....          -...++++++||++|+|+++|.+.|...
T Consensus       624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence                110000          1246789999999999999999988643

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.52  E-value=6.7e-13  Score=94.00  Aligned_cols=117  Identities=9%  Similarity=0.064  Sum_probs=72.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECCeEEEEEEcCCChhhH------H----HHHh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKNKSFCVWDVGGQNKIR------A----LWRH   80 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------~----~~~~   80 (181)
                      ..+++|+++|.+|+|||||+|++.+.......    .|...........+..+.++||||.....      .    ....
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~  108 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR  108 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence            45789999999999999999999997643322    22233333344577899999999955431      0    0222


Q ss_pred             hcc--CCCEEEEEEECCCcc-cHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           81 YFR--DTLGLTFVVDSSDRE-RIS--EARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        81 ~~~--~~d~ii~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      ++.  ..|++++|..++... ...  .+...+.......  --.++++|.||+|...+
T Consensus       109 ~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         109 YLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence            332  578888887665321 221  2233333332211  12469999999998643

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.52  E-value=3.7e-14  Score=106.10  Aligned_cols=162  Identities=15%  Similarity=0.138  Sum_probs=108.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC--ccccc-CccceeEEEEEECCeEEEEEEcCCChh----hHHH----HHh-hcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE--IVTTT-PTIGFNVEAVEYKNKSFCVWDVGGQNK----IRAL----WRH-YFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~i~d~~g~~~----~~~~----~~~-~~~   83 (181)
                      ..-.++++|-|++|||||+|.+...+  ..++. .|.+.-...+.+.-..+++.||||--+    ....    ... ..+
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAH  246 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAH  246 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHH
Confidence            45679999999999999999887665  22222 233333444555667889999999211    1111    111 112


Q ss_pred             CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233           84 DTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      --.+|+|+.|++...  |+......|..+.-.  +.+.|+|+|+||+|.....+..+-...+-.......+++++++|+.
T Consensus       247 LraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~  324 (620)
T KOG1490|consen  247 LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCV  324 (620)
T ss_pred             hhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEeccc
Confidence            236799999998653  556666666666433  3589999999999997765554444333222224566899999999


Q ss_pred             CCCCHHHHHHHHHhhhhc
Q 030233          162 SGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (181)
                      +-+|+.++....++.+..
T Consensus       325 ~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  325 QEEGVMDVRTTACEALLA  342 (620)
T ss_pred             chhceeeHHHHHHHHHHH
Confidence            999999998888877643

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.52  E-value=1e-12  Score=94.63  Aligned_cols=116  Identities=10%  Similarity=0.094  Sum_probs=70.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCc----cceeEEEEEECCeEEEEEEcCCChhhHHH---HHhhc-----
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPT----IGFNVEAVEYKNKSFCVWDVGGQNKIRAL---WRHYF-----   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---~~~~~-----   82 (181)
                      ...++|+++|.+|+||||++|++++......+..    ...........+..+.++||||..+....   ....+     
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~  115 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL  115 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence            4578999999999999999999998763222211    11112223347889999999996543221   11111     


Q ss_pred             -cCCCEEEEEEECCCc--ccH-HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           83 -RDTLGLTFVVDSSDR--ERI-SEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        83 -~~~d~ii~v~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                       ...|+++||.+++..  ... ..+...+..+....  --.++|+++|++|...
T Consensus       116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP  167 (313)
T ss_pred             cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence             258999999665422  211 22223333332211  1246899999999753

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=4.3e-13  Score=99.19  Aligned_cols=154  Identities=18%  Similarity=0.077  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc------cccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      -|+..|+-..|||||+..+.+....      ...-|+...++.....+..+.++|+||++++-......+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            4788999999999999999887632      2345666666777778889999999999999988888888999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      |.++.  +......-..++...  .....++|++|+|..++...++..+.+-.. ....+.+++.+|+.+|+||++|.+.
T Consensus        82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~-l~l~~~~i~~~s~~~g~GI~~Lk~~  156 (447)
T COG3276          82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILAD-LSLANAKIFKTSAKTGRGIEELKNE  156 (447)
T ss_pred             eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhh-cccccccccccccccCCCHHHHHHH
Confidence            99532  222111111222221  235579999999998765555544444221 1256678899999999999999999


Q ss_pred             HHhhh
Q 030233          173 LSNNI  177 (181)
Q Consensus       173 i~~~~  177 (181)
                      |.+..
T Consensus       157 l~~L~  161 (447)
T COG3276         157 LIDLL  161 (447)
T ss_pred             HHHhh
Confidence            98876

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.51  E-value=2.9e-13  Score=94.11  Aligned_cols=160  Identities=14%  Similarity=0.080  Sum_probs=90.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEECCeEEEEEEcCCChh-------hHHHH----Hhh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEYKNKSFCVWDVGGQNK-------IRALW----RHY   81 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~----~~~   81 (181)
                      ++|+++|.+|+||||++|.+++......     ..|...........+..+.++||||-.+       .....    ...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            4899999999999999999999884322     2345555666677999999999999321       11111    123


Q ss_pred             ccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---cc-ccCCccEEEE
Q 030233           82 FRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---LY-SLGQRRWSIQ  156 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---~~-~~~~~~~~~~  156 (181)
                      ..+.|++++|+.+.... .-.....++..++....  -..++++++..|.......++..+...   +. .....+-.|.
T Consensus        81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            45689999999997221 12223334444443321  135888889888776555333222110   00 0011111344


Q ss_pred             Eeecc------CCCCHHHHHHHHHhhhhc
Q 030233          157 SCSAI------SGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       157 ~~Sa~------~~~~i~~l~~~i~~~~~~  179 (181)
                      ..+..      ....+.+|++.+-+.+.+
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~  187 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQE  187 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence            44433      345788888888777654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00101 ureG urease accessory protein UreG

Probab=99.51  E-value=3.3e-13  Score=92.74  Aligned_cols=101  Identities=16%  Similarity=0.178  Sum_probs=64.0

Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE--EEEEeCCCCCCC--CCH
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL--LVFANKQDLPNV--MPT  136 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi--ilv~nK~D~~~~--~~~  136 (181)
                      ....++++.|..-.....+.   -++.++.|+|+.+.++...   ....        .+..  ++++||+|+.+.  .+.
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~~--------qi~~ad~~~~~k~d~~~~~~~~~  157 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGGP--------GITRSDLLVINKIDLAPMVGADL  157 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhHh--------HhhhccEEEEEhhhccccccccH
Confidence            46677788883221111111   1578999999976544321   1111        2223  899999999853  334


Q ss_pred             HHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          137 AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      +.+.+.....   ....+++++||++|+|++++|+++.+++.
T Consensus       158 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       158 GVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4434333322   34568999999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.49  E-value=1.6e-14  Score=101.59  Aligned_cols=113  Identities=16%  Similarity=0.085  Sum_probs=58.6

Q ss_pred             EEEEEEcCCChhhHHHHHhhc--------cCCCEEEEEEECCCcc---cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233           62 SFCVWDVGGQNKIRALWRHYF--------RDTLGLTFVVDSSDRE---RISEARNELHQILSDNELSNAALLVFANKQDL  130 (181)
Q Consensus        62 ~~~i~d~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~  130 (181)
                      .+.++|||||.++...+....        ...-++++++|.....   .|-...-.-...+.+   .+.|.|.|+||+|+
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~Dl  168 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKIDL  168 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GGG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccCc
Confidence            799999999987665443332        3456889999986433   232221111111111   37999999999999


Q ss_pred             CCCCC---------H-----------HHHHhhhCccccCCccE-EEEEeeccCCCCHHHHHHHHHhhh
Q 030233          131 PNVMP---------T-----------AEVADKLELYSLGQRRW-SIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       131 ~~~~~---------~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      .+...         .           ..+.+.+.......... .++.+|+.+++++++++..+.+..
T Consensus       169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            86220         0           11111111111112233 799999999999999999988764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00416 elongation factor 2; Provisional

Probab=99.47  E-value=7.6e-13  Score=108.07  Aligned_cols=112  Identities=20%  Similarity=0.148  Sum_probs=77.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC--cc----------c-------ccCccceeEEEEEEC----------CeEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV----------T-------TTPTIGFNVEAVEYK----------NKSFCV   65 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~----------~-------~~~~~~~~~~~~~~~----------~~~~~i   65 (181)
                      .+.-+|+++|+.++|||||+++++...  ..          +       ...|+......+.+.          +..+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            344489999999999999999998632  10          0       011111111122332          567999


Q ss_pred             EEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           66 WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        66 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      +||||+.+|.......++.+|++|+|+|+.+.-.-+ ....+..+..    .++|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence            999999999988889999999999999997642222 2233333333    368999999999986

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.3e-13  Score=103.47  Aligned_cols=156  Identities=21%  Similarity=0.203  Sum_probs=104.0

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCC----------------------c------------ccccCccceeEEEEE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGE----------------------I------------VTTTPTIGFNVEAVE   57 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~----------------------~------------~~~~~~~~~~~~~~~   57 (181)
                      ..++..++++++|+..+|||||+-+++..-                      +            ...+.|+.+....++
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe  251 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE  251 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence            345567899999999999999999886410                      0            011224444444555


Q ss_pred             ECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc---ccHHHH--HHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           58 YKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEA--RNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        58 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      -....+.+.|+||+.+|-.....-...+|+.++|+|++-.   .+|+..  ......+++.  ..-.-+|+++||+|+.+
T Consensus       252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~--Lgi~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS--LGISQLIVAINKMDLVS  329 (603)
T ss_pred             cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH--cCcceEEEEeecccccC
Confidence            5778999999999999988888888899999999999742   222211  1112222222  13466899999999876


Q ss_pred             C--CCHHHHHhhh-----CccccCCccEEEEEeeccCCCCHHHH
Q 030233          133 V--MPTAEVADKL-----ELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus       133 ~--~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      =  ...+++...+     ....+...++.|++||+..|+|+-..
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            2  2233333333     23334556778999999999997543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.45  E-value=8.1e-13  Score=108.06  Aligned_cols=113  Identities=18%  Similarity=0.100  Sum_probs=78.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCc--c----------c-------ccCccceeEEEEEE----------------
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEI--V----------T-------TTPTIGFNVEAVEY----------------   58 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~--~----------~-------~~~~~~~~~~~~~~----------------   58 (181)
                      +.+--+|+++|+.++|||||+.+++...-  .          +       ...|+......+.+                
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            34445799999999999999999975431  0          0       01122211222222                


Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      .+..+.++||||+.+|.......++.+|++|+|+|+.+.-.... ...+..+..    .++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence            25778999999999999999999999999999999975422222 223333333    378999999999987

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=2.2e-12  Score=92.89  Aligned_cols=159  Identities=21%  Similarity=0.148  Sum_probs=99.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC----cc------cccCccc--eeEEEEEE-------CCeEEEEEEcCCChhhH
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE----IV------TTTPTIG--FNVEAVEY-------KNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~----~~------~~~~~~~--~~~~~~~~-------~~~~~~i~d~~g~~~~~   75 (181)
                      .-++++.++|+..||||||.+++..-.    +.      +...|++  +....+..       +..++.+.|.||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            346899999999999999999996532    11      1122222  22222211       45688999999987766


Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhC--cccc
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLE--LYSL  148 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~--~~~~  148 (181)
                      +.......-.|..++|+|+.....-+.. ...+-.+      -....++|+||.|+..+...    ++..+.+.  ++..
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            6665565667999999999753211111 1112222      23456888999998765322    22222221  1111


Q ss_pred             C-CccEEEEEeeccCC----CCHHHHHHHHHhhhhc
Q 030233          149 G-QRRWSIQSCSAISG----QGLYEGLDWLSNNISV  179 (181)
Q Consensus       149 ~-~~~~~~~~~Sa~~~----~~i~~l~~~i~~~~~~  179 (181)
                      + ..+.+++++||..|    +++.++.+.+..++.+
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            2 23579999999999    8888888888777654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.44  E-value=1.5e-12  Score=93.79  Aligned_cols=121  Identities=14%  Similarity=0.216  Sum_probs=71.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccccc-----------CccceeEEEEEE----CCeEEEEEEcCCChh--------
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTT-----------PTIGFNVEAVEY----KNKSFCVWDVGGQNK--------   73 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~-----------~~~~~~~~~~~~----~~~~~~i~d~~g~~~--------   73 (181)
                      +++|+|+|.+|+|||||+|.|++.......           .+..+.......    ....+.++||||..+        
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            689999999999999999999987632221           222233333333    335789999999321        


Q ss_pred             ----------hHHHHHhh-------c--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233           74 ----------IRALWRHY-------F--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM  134 (181)
Q Consensus        74 ----------~~~~~~~~-------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  134 (181)
                                +.......       .  ...|+++|.++.+. .++...+..+.+-+..    .+++|.|+.|+|.....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRLSK----RVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHhcc----cccEEeEEecccccCHH
Confidence                      11110000       0  13689999999874 4455555544444443    68999999999987644


Q ss_pred             CHHHHHhh
Q 030233          135 PTAEVADK  142 (181)
Q Consensus       135 ~~~~~~~~  142 (181)
                      +...++..
T Consensus       159 el~~~k~~  166 (281)
T PF00735_consen  159 ELQAFKQR  166 (281)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44333443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.8e-12  Score=92.47  Aligned_cols=160  Identities=16%  Similarity=0.099  Sum_probs=105.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccccc------Cc--ccee---EE---------------EEEE------CCeE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTT------PT--IGFN---VE---------------AVEY------KNKS   62 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~------~~--~~~~---~~---------------~~~~------~~~~   62 (181)
                      +..++|.++|+...|||||...+.|--....+      .+  +|+.   .+               .+..      --..
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            56899999999999999999999874322110      00  1100   00               0110      1147


Q ss_pred             EEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHH
Q 030233           63 FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAE  138 (181)
Q Consensus        63 ~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~  138 (181)
                      +++.|.|||+-.-+....-..--|+.++|++++.+..-.+..+-+..+--.   .-..+|++=||.|+...+.    .++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence            899999999876555444444469999999999865444444433332111   2356899999999987432    344


Q ss_pred             HHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++++..-.  -..+.+++++||.++.||+-+++.|.+.+..
T Consensus       165 Ik~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         165 IKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             HHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            44444322  2356689999999999999999999998764

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.43  E-value=8.5e-13  Score=89.91  Aligned_cols=155  Identities=20%  Similarity=0.258  Sum_probs=102.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC----cccccCccceeEEEEEE-CCeEEEEEEcCCChhhHH-----HHHhhccCCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE----IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRA-----LWRHYFRDTL   86 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~-----~~~~~~~~~d   86 (181)
                      .-||+++|.+|+||||+=.-+..+.    ....++|+++....+.+ .+..+.+||.+|++.+-.     .....++..+
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            3579999999999999866555433    44556677776666655 568999999999985432     3556778899


Q ss_pred             EEEEEEECCCcc---cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc---cccCCccEEEEEeec
Q 030233           87 GLTFVVDSSDRE---RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL---YSLGQRRWSIQSCSA  160 (181)
Q Consensus        87 ~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa  160 (181)
                      ++++|||+...+   .+......++.+++.  .+...+....+|+|+......+.+-.....   ..-......++++|.
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            999999998653   455556666666654  377889999999999875544433222110   001223456788876


Q ss_pred             cCCCCHHHHHHHHH
Q 030233          161 ISGQGLYEGLDWLS  174 (181)
Q Consensus       161 ~~~~~i~~l~~~i~  174 (181)
                      .+ +++-+.|..+.
T Consensus       162 wD-etl~KAWS~iv  174 (295)
T KOG3886|consen  162 WD-ETLYKAWSSIV  174 (295)
T ss_pred             hh-HHHHHHHHHHH
Confidence            55 34444444333

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=3.3e-12  Score=94.44  Aligned_cols=112  Identities=19%  Similarity=0.247  Sum_probs=82.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhc--CCccc-----------------------ccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233           19 KLLMVGLDASGKTTILYKMKL--GEIVT-----------------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNK   73 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~--~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   73 (181)
                      ..+++-+|.+|||||-..++-  +.+..                       ....+.....++.|.+..+.+.|||||++
T Consensus        14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD   93 (528)
T COG4108          14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED   93 (528)
T ss_pred             ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence            459999999999999988752  21110                       11222344556777999999999999999


Q ss_pred             hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233           74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP  135 (181)
Q Consensus        74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  135 (181)
                      |..-+-.-+.-+|..++|+|+..  +++.-...+..+.+.   .++||+=++||.|.....+
T Consensus        94 FSEDTYRtLtAvDsAvMVIDaAK--GiE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP  150 (528)
T COG4108          94 FSEDTYRTLTAVDSAVMVIDAAK--GIEPQTLKLFEVCRL---RDIPIFTFINKLDREGRDP  150 (528)
T ss_pred             cchhHHHHHHhhheeeEEEeccc--CccHHHHHHHHHHhh---cCCceEEEeeccccccCCh
Confidence            99888888888999999999964  344444444444444   5899999999999865443

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.41  E-value=7.6e-13  Score=93.79  Aligned_cols=96  Identities=19%  Similarity=0.142  Sum_probs=72.8

Q ss_pred             hhhHHHHHhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH-HHHhhhCccccC
Q 030233           72 NKIRALWRHYFRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA-EVADKLELYSLG  149 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~  149 (181)
                      +++..+...++.++|++++|+|+.++. ++..+..|+..+. .   .++|+++|+||+|+.+..... +..+.+     .
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~-~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAE-A---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence            456666667899999999999999877 8999888887553 2   579999999999996532221 122222     2


Q ss_pred             CccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          150 QRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      ..+.+++++||++|+|++++|+.+.+.
T Consensus        95 ~~g~~v~~~SAktg~gi~eLf~~l~~~  121 (245)
T TIGR00157        95 NIGYQVLMTSSKNQDGLKELIEALQNR  121 (245)
T ss_pred             HCCCeEEEEecCCchhHHHHHhhhcCC
Confidence            245689999999999999999988754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.39  E-value=1.7e-12  Score=90.55  Aligned_cols=149  Identities=15%  Similarity=0.191  Sum_probs=89.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC------C-----cccccC------------------ccceeEEEE----------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG------E-----IVTTTP------------------TIGFNVEAV----------   56 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~------~-----~~~~~~------------------~~~~~~~~~----------   56 (181)
                      +.+.|++.|+||+|||||++.+...      .     ..+.+|                  -.++..+..          
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            5789999999999999999998641      1     001111                  111111111          


Q ss_pred             ----------EECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233           57 ----------EYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFAN  126 (181)
Q Consensus        57 ----------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  126 (181)
                                ...++.+.+++|.|-.+....   ...-+|.+++|.-..-.+.++.++.-+.++         .=++|+|
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVN  175 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVN  175 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEe
Confidence                      114578999999985443332   344589999999887666666655544444         1289999


Q ss_pred             CCCCCCCCC-HHHHHhhhCccc--cCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          127 KQDLPNVMP-TAEVADKLELYS--LGQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       127 K~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      |+|...... ..++...+.+..  ...+..+++.+||.+++|++++++.|.+.
T Consensus       176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            999543211 223344333221  23456799999999999999999998875

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.39  E-value=1.5e-12  Score=82.89  Aligned_cols=113  Identities=19%  Similarity=0.114  Sum_probs=78.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccc-c-CccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTT-T-PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      ++++++|+.|+|||+|+.++....+... . ++.+                       +........+.++.++.|++..
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~   57 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD   57 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence            4899999999999999999976665421 1 2222                       3333445667889999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           96 DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      ++++++..  |...++.. ...++|.++++||.|+....   .+....        ...++++|+++|+|+.
T Consensus        58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~  115 (124)
T smart00010       58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE  115 (124)
T ss_pred             CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence            98888655  55555443 33578999999999974321   111111        1136788999999985

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.38  E-value=1.2e-11  Score=90.35  Aligned_cols=107  Identities=14%  Similarity=0.036  Sum_probs=65.9

Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE  138 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  138 (181)
                      .+..+.+.||+|.....   ......+|.++++.+..   +-+++......+      ...|.++++||+|+........
T Consensus       125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~  192 (300)
T TIGR00750       125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI  192 (300)
T ss_pred             CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence            35789999999954222   23456678888885443   233333333333      2466799999999876433222


Q ss_pred             HHhhh----Cc--cccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          139 VADKL----EL--YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       139 ~~~~~----~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      ....+    ..  .....+..+++++||++|+|++++++++.+..
T Consensus       193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            11111    11  00012234699999999999999999998763

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.37  E-value=3.7e-12  Score=103.01  Aligned_cols=110  Identities=21%  Similarity=0.159  Sum_probs=75.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC--ccc-----------------ccCccceeEEEEEE----CCeEEEEEEcCCChhh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE--IVT-----------------TTPTIGFNVEAVEY----KNKSFCVWDVGGQNKI   74 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~--~~~-----------------~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~   74 (181)
                      -+|+++|+.++|||||+.+++...  ...                 ...|+......+.+    .+..+.++||||+.++
T Consensus        21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df  100 (731)
T PRK07560         21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF  100 (731)
T ss_pred             cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence            369999999999999999997532  110                 01122222222222    4678999999999999


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      .......++.+|++++|+|+...-.- .....+......    +.|.|+++||+|...
T Consensus       101 ~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~~----~~~~iv~iNK~D~~~  153 (731)
T PRK07560        101 GGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALRE----RVKPVLFINKVDRLI  153 (731)
T ss_pred             HHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHHc----CCCeEEEEECchhhc
Confidence            88888899999999999998754222 222333333232    467799999999763

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.36  E-value=6.4e-12  Score=92.85  Aligned_cols=159  Identities=13%  Similarity=0.133  Sum_probs=81.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccc---eeEE--EEEEC-CeEEEEEEcCCChhhHHHHHh-----hc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIG---FNVE--AVEYK-NKSFCVWDVGGQNKIRALWRH-----YF   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~---~~~~--~~~~~-~~~~~i~d~~g~~~~~~~~~~-----~~   82 (181)
                      ..+++|+|+|.+|+|||||||.+.|-... +.....|   ++..  .+... .-++.+||.||...-......     .+
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            35789999999999999999999763211 1111111   1111  22222 246999999995332222222     34


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC--CC-------CCCHH----HHHhhhC--ccc
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL--PN-------VMPTA----EVADKLE--LYS  147 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~--~~-------~~~~~----~~~~~~~--~~~  147 (181)
                      ...|.+|++.+.    .|....-++...++.   .+.|+.+|-+|+|.  .+       .-..+    ++++...  +..
T Consensus       113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            467888887764    366666666555555   58999999999995  11       11111    2222211  111


Q ss_pred             cCCccEEEEEeeccCC--CCHHHHHHHHHhhhhcc
Q 030233          148 LGQRRWSIQSCSAISG--QGLYEGLDWLSNNISVK  180 (181)
Q Consensus       148 ~~~~~~~~~~~Sa~~~--~~i~~l~~~i~~~~~~~  180 (181)
                      .+-..-++|-+|+.+-  .++..|.+.+.+.+...
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence            1223446888988764  46888888888776543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.36  E-value=1.3e-11  Score=88.32  Aligned_cols=161  Identities=14%  Similarity=0.094  Sum_probs=104.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCC----CEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDT----LGL   88 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~----d~i   88 (181)
                      .-+|+++|+.++|||||+.++.+.+.......+++.+-.+.-    ...++.+|-..|+.....+....+...    ..+
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlv  131 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLV  131 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEE
Confidence            468999999999999999999988755545544444444333    235788999999877776665555432    467


Q ss_pred             EEEEECCCcccH-HHHHHHHHHHHcCCC----------------------------------------------------
Q 030233           89 TFVVDSSDRERI-SEARNELHQILSDNE----------------------------------------------------  115 (181)
Q Consensus        89 i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------------------------------  115 (181)
                      |++.|+++|.+. +.+..|..-+.++.+                                                    
T Consensus       132 iltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llP  211 (473)
T KOG3905|consen  132 ILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLP  211 (473)
T ss_pred             EEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccc
Confidence            888999998433 333334322221110                                                    


Q ss_pred             --------CCCCeEEEEEeCCCCCC----CCCHH-----HHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          116 --------LSNAALLVFANKQDLPN----VMPTA-----EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       116 --------~~~~piilv~nK~D~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                              ..++|+++|.+|||...    +.+..     .+...+.. +.-..+...+.+|+++..|++-+.++|.++..
T Consensus       212 L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRk-FCLr~GaaLiyTSvKE~KNidllyKYivhr~y  290 (473)
T KOG3905|consen  212 LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRK-FCLRYGAALIYTSVKETKNIDLLYKYIVHRSY  290 (473)
T ss_pred             cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHH-HHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence                    02349999999999732    11111     11111111 11235668999999999999999999998754

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=6.4e-12  Score=98.12  Aligned_cols=155  Identities=23%  Similarity=0.187  Sum_probs=103.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccc-----ccCccceeEEEEE----------------ECCeEEEEEEcCCChhh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-----TTPTIGFNVEAVE----------------YKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-----~~~~~~~~~~~~~----------------~~~~~~~i~d~~g~~~~   74 (181)
                      +.+-||++|+..+|||-|+..+-+.+...     ....+|-++....                +.--.+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            45679999999999999999987654221     1222333333221                12235789999999999


Q ss_pred             HHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---CC-------------
Q 030233           75 RALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNV---MP-------------  135 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~---~~-------------  135 (181)
                      ..++......||..|+|+|+..   +.++..    +..+ +.   .+.|.|+++||+|.+..   ..             
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lL-R~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k  625 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLL-RM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK  625 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHH----HHHH-Hh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence            9999999999999999999964   333333    3333 33   47999999999997542   11             


Q ss_pred             --HHHHHhhhC-------cc------ccC----CccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          136 --TAEVADKLE-------LY------SLG----QRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       136 --~~~~~~~~~-------~~------~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                        ..++...+.       ..      ++.    ..-+.++++||..|+||-+|+.+|.+..+
T Consensus       626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence              011111110       00      011    13457899999999999999999887643

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.35  E-value=3.6e-11  Score=91.76  Aligned_cols=153  Identities=18%  Similarity=0.141  Sum_probs=105.5

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCccc-----ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-----TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      ...+-+++.++|+.++|||.+++++.++.+..     ..+...++...+..+...+.+.|.+-. ......+.- ..||+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            34456899999999999999999999977544     122222333333345566777777754 222222222 56899


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-----CCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-----MPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      +.++||.+++.+|......+......   .+.|+++|+.|+|+.+.     .+..+++..+...       +....|.+.
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~~  568 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSKT  568 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccCC
Confidence            99999999999999998887766444   68999999999998653     3345666655443       355666664


Q ss_pred             CCCHHHHHHHHHhhhh
Q 030233          163 GQGLYEGLDWLSNNIS  178 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (181)
                      ... .++|..|..+..
T Consensus       569 ~~s-~~lf~kL~~~A~  583 (625)
T KOG1707|consen  569 LSS-NELFIKLATMAQ  583 (625)
T ss_pred             CCC-chHHHHHHHhhh
Confidence            223 888888877653

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.35  E-value=4.2e-12  Score=88.04  Aligned_cols=150  Identities=15%  Similarity=0.114  Sum_probs=83.3

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc--c-----ccC----------ccceeEEE--------------------
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV--T-----TTP----------TIGFNVEA--------------------   55 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~-----~~~----------~~~~~~~~--------------------   55 (181)
                      .+.....|.++|..|+|||||+++++.....  .     ...          ..+.....                    
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~   97 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED   97 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence            3445678999999999999999999754110  0     000          00000000                    


Q ss_pred             EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233           56 VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP  135 (181)
Q Consensus        56 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  135 (181)
                      ....+..+.+.+|.|.-...   ..+....+..+.|+|+.+.+....  . ....      ...|.++++||+|+.+...
T Consensus        98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~------~~~a~iiv~NK~Dl~~~~~  165 (207)
T TIGR00073        98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--K-YPGM------FKEADLIVINKADLAEAVG  165 (207)
T ss_pred             hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--h-hHhH------HhhCCEEEEEHHHccccch
Confidence            00013466677777621100   011112344556777764432111  0 1111      2456799999999975322


Q ss_pred             --HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          136 --TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       136 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                        ..++...+...   ....+++++||++|+|++++++++.+..
T Consensus       166 ~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       166 FDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             hhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence              23333332211   2345799999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.33  E-value=2.5e-11  Score=86.05  Aligned_cols=158  Identities=15%  Similarity=0.221  Sum_probs=97.2

Q ss_pred             HhhhhCCC--CccEEEEEcCCCCChHHHHHhhhcCC-----------cccccCc------------------cceeEEE-
Q 030233            8 LAKRFFPQ--CRIKLLMVGLDASGKTTILYKMKLGE-----------IVTTTPT------------------IGFNVEA-   55 (181)
Q Consensus         8 ~~~~~~~~--~~~~i~~~G~~~~GKssl~~~~~~~~-----------~~~~~~~------------------~~~~~~~-   55 (181)
                      +.+...|.  +...|.+.|.||+|||||+..|...-           ..+.+|.                  ++...+. 
T Consensus        40 ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~  119 (323)
T COG1703          40 LLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS  119 (323)
T ss_pred             HHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec
Confidence            44444443  56799999999999999999885311           0011110                  0111111 


Q ss_pred             -------------------EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCC
Q 030233           56 -------------------VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL  116 (181)
Q Consensus        56 -------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~  116 (181)
                                         +...++.+.|++|.|-.+.....   ...+|.+++|.=..-.+.++.++.-+.++   .  
T Consensus       120 ~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEi---a--  191 (323)
T COG1703         120 PSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEI---A--  191 (323)
T ss_pred             CCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhh---h--
Confidence                               11145789999999855544333   33489988887655455566555544433   2  


Q ss_pred             CCCeEEEEEeCCCCCCC-CCHHHHHhhhCcc----ccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          117 SNAALLVFANKQDLPNV-MPTAEVADKLELY----SLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       117 ~~~piilv~nK~D~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                          =|+|+||.|.... ....++...+...    ....+..+++.+||.+|+|++++++.+.+..
T Consensus       192 ----Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         192 ----DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR  253 (323)
T ss_pred             ----heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence                2899999995442 1223344444332    1244667899999999999999999988764

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.32  E-value=1.2e-11  Score=82.89  Aligned_cols=64  Identities=17%  Similarity=0.220  Sum_probs=43.2

Q ss_pred             eEEEEEEcCCChh----hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030233           61 KSFCVWDVGGQNK----IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ  128 (181)
Q Consensus        61 ~~~~i~d~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~  128 (181)
                      ..+.++||||...    ....+..++..+|++++|.++....+-.....+.... ..   ....+++|.||.
T Consensus       101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA  168 (168)
T ss_dssp             CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred             cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence            4689999999532    2356778889999999999998754444333333333 33   244489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=7.2e-11  Score=93.96  Aligned_cols=115  Identities=18%  Similarity=0.121  Sum_probs=83.4

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC--cc---c----------------ccCccceeEEEEEECC-eEEEEEEcCCC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV---T----------------TTPTIGFNVEAVEYKN-KSFCVWDVGGQ   71 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~---~----------------~~~~~~~~~~~~~~~~-~~~~i~d~~g~   71 (181)
                      +++.-+|.++|+..+||||+..+++-..  ..   .                ...|+......+.+.+ ..++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            3445579999999999999999996422  00   0                1223334444566774 99999999999


Q ss_pred             hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      -+|.......++-+|+++.|+|+...-..+ ....|.....    .++|.++++||+|....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~----~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADK----YGVPRILFVNKMDRLGA  143 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhh----cCCCeEEEEECcccccc
Confidence            999999999999999999999997532222 2223333322    47999999999998653

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.26  E-value=4.2e-11  Score=87.04  Aligned_cols=123  Identities=19%  Similarity=0.260  Sum_probs=79.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-----------ccCccceeEEEEEE----CCeEEEEEEcCCChhh-----
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-----------TTPTIGFNVEAVEY----KNKSFCVWDVGGQNKI-----   74 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~-----   74 (181)
                      ...++|+++|++|+|||||+|++++.....           ..+++.+......+    -...+.++||||-.++     
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            347999999999999999999999874211           12333344443333    3368899999993211     


Q ss_pred             ---------HHHHHhhc--------------cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           75 ---------RALWRHYF--------------RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        75 ---------~~~~~~~~--------------~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                               .++...++              ..+|+++|.+..+ ..++..++-.+.+-+..    .+.+|.|+.|+|..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~l  175 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRLSK----RVNLIPVIAKADTL  175 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHHhc----ccCeeeeeeccccC
Confidence                     11111111              1368999999877 46676666555444443    67899999999987


Q ss_pred             CCCCHHHHHhh
Q 030233          132 NVMPTAEVADK  142 (181)
Q Consensus       132 ~~~~~~~~~~~  142 (181)
                      -......+++.
T Consensus       176 T~~El~~~K~~  186 (373)
T COG5019         176 TDDELAEFKER  186 (373)
T ss_pred             CHHHHHHHHHH
Confidence            75444444443

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.26  E-value=7.4e-12  Score=89.64  Aligned_cols=56  Identities=29%  Similarity=0.306  Sum_probs=40.4

Q ss_pred             CeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          119 AALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       119 ~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      .+-++|+||+|+.+..  +.+.+...+..   .....+++++||++|+|++++.+||.++.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~~  288 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQR  288 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            4569999999997532  23333333322   23456899999999999999999998754

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.25  E-value=3.8e-10  Score=83.96  Aligned_cols=151  Identities=17%  Similarity=0.150  Sum_probs=88.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC----Ccc-----------cccCccc---eeEEE-------EEE-----CCeEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG----EIV-----------TTTPTIG---FNVEA-------VEY-----KNKSFC   64 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~----~~~-----------~~~~~~~---~~~~~-------~~~-----~~~~~~   64 (181)
                      ..++.|+++|+.++|||||+|+|.+.    +..           -..+..|   +++..       +.+     ...++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            46799999999999999999999987    322           1122223   22221       222     337899


Q ss_pred             EEEcCCChh--------hHH---------------------HHHhhcc-CCCEEEEEE-ECC----CcccH-HHHHHHHH
Q 030233           65 VWDVGGQNK--------IRA---------------------LWRHYFR-DTLGLTFVV-DSS----DRERI-SEARNELH  108 (181)
Q Consensus        65 i~d~~g~~~--------~~~---------------------~~~~~~~-~~d~ii~v~-d~~----~~~s~-~~~~~~~~  108 (181)
                      ++||+|...        -..                     -+...+. +++..++|. |.+    .++.+ .....++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            999999221        000                     1334455 789988888 764    12233 33445555


Q ss_pred             HHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc--CCCCHHHHHHHHH
Q 030233          109 QILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI--SGQGLYEGLDWLS  174 (181)
Q Consensus       109 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~l~~~i~  174 (181)
                      .+.+    .++|+++++||.|-.... ...+.+.+.    ...+.+++.+|+.  +-+.|..+++.+.
T Consensus       175 eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       175 ELKE----LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             HHHh----cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence            5544    489999999999944322 333333321    1123456666654  3445666665543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.24  E-value=1.6e-10  Score=88.43  Aligned_cols=162  Identities=15%  Similarity=0.125  Sum_probs=100.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccC----CCEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRD----TLGL   88 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~----~d~i   88 (181)
                      .-+|+|+|..++|||||+.+|.+.+.+.....+++++..+.-    ....+.+|...|...+..+..-.+..    --.+
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~v  104 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLV  104 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEE
Confidence            457999999999999999999876543333333344433322    22468999999877777766555542    2568


Q ss_pred             EEEEECCCcccHH-HHHHHHHHH------------------------HcC-------C---------------C------
Q 030233           89 TFVVDSSDRERIS-EARNELHQI------------------------LSD-------N---------------E------  115 (181)
Q Consensus        89 i~v~d~~~~~s~~-~~~~~~~~~------------------------~~~-------~---------------~------  115 (181)
                      ++|+|.+.|..+- .+..|+.-+                        ++.       .               .      
T Consensus       105 vIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~l  184 (472)
T PF05783_consen  105 VIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLL  184 (472)
T ss_pred             EEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccC
Confidence            8899999874332 222221111                        000       0               0      


Q ss_pred             ---------CCCCeEEEEEeCCCCCC----CCCH--H---HHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          116 ---------LSNAALLVFANKQDLPN----VMPT--A---EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       116 ---------~~~~piilv~nK~D~~~----~~~~--~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                               .-++|+++|.+|+|...    +...  +   -+...+. ...-..+...+.+|++...|++.++.+|.+.+
T Consensus       185 pl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR-~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l  263 (472)
T PF05783_consen  185 PLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR-TFCLKYGASLIYTSVKEEKNLDLLYKYILHRL  263 (472)
T ss_pred             CCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH-HHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence                     01269999999999632    1111  1   1111111 11123566789999999999999999999887


Q ss_pred             hc
Q 030233          178 SV  179 (181)
Q Consensus       178 ~~  179 (181)
                      ..
T Consensus       264 ~~  265 (472)
T PF05783_consen  264 YG  265 (472)
T ss_pred             cc
Confidence            64

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.24  E-value=5.7e-11  Score=79.38  Aligned_cols=80  Identities=21%  Similarity=0.205  Sum_probs=51.7

Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhhCccccCCccEEEEEeeccCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT--AEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      +.-|+|+|++..+-...  +      ...... ..=++|+||.|+.+....  +.+.+.....   +...+++++|+++|
T Consensus       119 ~~~v~VidvteGe~~P~--K------~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~---np~~~ii~~n~ktg  186 (202)
T COG0378         119 HLRVVVIDVTEGEDIPR--K------GGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEV---NPEAPIIFTNLKTG  186 (202)
T ss_pred             ceEEEEEECCCCCCCcc--c------CCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHh---CCCCCEEEEeCCCC
Confidence            47888888875432111  0      011101 134899999999774433  5444443322   35668999999999


Q ss_pred             CCHHHHHHHHHhhh
Q 030233          164 QGLYEGLDWLSNNI  177 (181)
Q Consensus       164 ~~i~~l~~~i~~~~  177 (181)
                      +|++++++|+...+
T Consensus       187 ~G~~~~~~~i~~~~  200 (202)
T COG0378         187 EGLDEWLRFIEPQA  200 (202)
T ss_pred             cCHHHHHHHHHhhc
Confidence            99999999998764

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.23  E-value=3.1e-10  Score=88.79  Aligned_cols=115  Identities=12%  Similarity=0.066  Sum_probs=70.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECCeEEEEEEcCCChhhH-------H---HHHhh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKNKSFCVWDVGGQNKIR-------A---LWRHY   81 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~---~~~~~   81 (181)
                      ..++|+++|.+|+||||++|++++.......    .|...........+..+.++||||-....       .   ....+
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            3578999999999999999999998632222    22222222223467889999999954321       1   12223


Q ss_pred             cc--CCCEEEEEEECCCcccHHHHHHH---HHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           82 FR--DTLGLTFVVDSSDRERISEARNE---LHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        82 ~~--~~d~ii~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      +.  .+|++|+|..+.......+....   +..++...  --..+|+|+|+.|..+
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP  250 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence            33  57999999887533222122223   33333221  1145799999999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=1.5e-10  Score=84.66  Aligned_cols=140  Identities=14%  Similarity=0.219  Sum_probs=87.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccc----------ccCccceeEEEEEEC----CeEEEEEEcCCChhh-------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVT----------TTPTIGFNVEAVEYK----NKSFCVWDVGGQNKI-------   74 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~----------~~~~~~~~~~~~~~~----~~~~~i~d~~g~~~~-------   74 (181)
                      ..|+++++|++|.|||||+|+|+......          ...+..+......+.    ..++++.||||..+.       
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            36999999999999999999998874221          112344444444442    368899999993211       


Q ss_pred             -------HHHHHhhc-----------c--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233           75 -------RALWRHYF-----------R--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM  134 (181)
Q Consensus        75 -------~~~~~~~~-----------~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  134 (181)
                             .+....++           .  .+|+++|.+... ..++..++-.+.+-+.    ..+.+|.|+-|.|.....
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~  174 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD  174 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence                   11111121           2  468999999876 4566666655554443    368899999999987754


Q ss_pred             CHHHHHhhhCccccCCccEEEEEeecc
Q 030233          135 PTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      ....++... .......++++|.....
T Consensus       175 El~~~K~~I-~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  175 ELNQFKKRI-RQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             HHHHHHHHH-HHHHHHcCcceecCCCC
Confidence            444444433 11223445555555433

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=2.8e-10  Score=80.56  Aligned_cols=160  Identities=20%  Similarity=0.165  Sum_probs=102.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC-------Cccc------------ccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG-------EIVT------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~-------~~~~------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   75 (181)
                      +...+|..+|+...|||||...+..-       ....            ...|+......++..+..+...|.||+.+|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            44689999999999999998877531       1111            1223333333444578899999999999999


Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH-----HHHhhhCccccCC
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA-----EVADKLELYSLGQ  150 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~  150 (181)
                      .+...-.-+.|+.|+|+++++. ...+.++-+....+-   .-+.+++++||+|+.+..+.-     ++++.++...+..
T Consensus        90 KNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g  165 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG  165 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence            8877777789999999999863 122222222221111   234577888999998744332     2334444444444


Q ss_pred             ccEEEEEeeccCCC--------CHHHHHHHHHhhhh
Q 030233          151 RRWSIQSCSAISGQ--------GLYEGLDWLSNNIS  178 (181)
Q Consensus       151 ~~~~~~~~Sa~~~~--------~i~~l~~~i~~~~~  178 (181)
                      .+.+++..||...-        .|.+|.+.+..++.
T Consensus       166 d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip  201 (394)
T COG0050         166 DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP  201 (394)
T ss_pred             CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence            56788888877522        35677777666654

>smart00053 DYNc Dynamin, GTPase

Probab=99.21  E-value=2.6e-09  Score=75.20  Aligned_cols=69  Identities=14%  Similarity=0.162  Sum_probs=42.8

Q ss_pred             eEEEEEEcCCChh-------------hHHHHHhhccC-CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233           61 KSFCVWDVGGQNK-------------IRALWRHYFRD-TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFAN  126 (181)
Q Consensus        61 ~~~~i~d~~g~~~-------------~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  126 (181)
                      ..+.++|+||...             ...+...+++. .+.+++|+|+...-.-+........+ ..   ...|+++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d~---~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-DP---QGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-HH---cCCcEEEEEE
Confidence            5799999999531             22345667774 46888999885321111111222222 22   4789999999


Q ss_pred             CCCCCCC
Q 030233          127 KQDLPNV  133 (181)
Q Consensus       127 K~D~~~~  133 (181)
                      |.|..+.
T Consensus       201 K~D~~~~  207 (240)
T smart00053      201 KLDLMDE  207 (240)
T ss_pred             CCCCCCc
Confidence            9998763

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.21  E-value=8.2e-10  Score=76.64  Aligned_cols=151  Identities=19%  Similarity=0.147  Sum_probs=96.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC--cccccC-ccceeEEEEEECCeEEEEEEcCCChhhH-------HHHHhhccCCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE--IVTTTP-TIGFNVEAVEYKNKSFCVWDVGGQNKIR-------ALWRHYFRDTL   86 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~d   86 (181)
                      .-+++++|-|.+|||||+..+....  ...+.. |+..--..+.+.+..+++.|.||--...       ++.....+.+|
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD  141 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD  141 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence            4689999999999999999997644  222221 2222233467789999999999833222       23445567899


Q ss_pred             EEEEEEECCCcccHHHHH-HHHHHHHcC--CCCCC---------------------------------------------
Q 030233           87 GLTFVVDSSDRERISEAR-NELHQILSD--NELSN---------------------------------------------  118 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~--~~~~~---------------------------------------------  118 (181)
                      .+++|+|++..+.-.... ..++.+=-+  ...++                                             
T Consensus       142 lilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~Re  221 (364)
T KOG1486|consen  142 LILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFRE  221 (364)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEec
Confidence            999999998654333222 122221000  11111                                             


Q ss_pred             -----------------CeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          119 -----------------AALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       119 -----------------~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                                       ++++.|.||+|...   .+++.+...     ..+  -+-+|+.-.-|++.+++.+.+.+
T Consensus       222 D~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs---~eevdrlAr-----~Pn--svViSC~m~lnld~lle~iWe~l  287 (364)
T KOG1486|consen  222 DCTVDDFIDVIEGNRVYIKCLYVYNKIDQVS---IEEVDRLAR-----QPN--SVVISCNMKLNLDRLLERIWEEL  287 (364)
T ss_pred             CCChHHHHHHHhccceEEEEEEEeeccceec---HHHHHHHhc-----CCC--cEEEEeccccCHHHHHHHHHHHh
Confidence                             17888999999655   666665442     222  45567777889999999998875

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.20  E-value=2.2e-10  Score=82.09  Aligned_cols=148  Identities=17%  Similarity=0.179  Sum_probs=97.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc---ccccCccceeEEEEEE-CCeEEEEEEcCCC---------hhhHHHHHhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI---VTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ---------NKIRALWRHYF   82 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~---------~~~~~~~~~~~   82 (181)
                      ....|.++|-.++|||||++.+.+...   .....|++.+...... .+..+.+.||-|.         ..|++... -.
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-eV  255 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-EV  255 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-HH
Confidence            346799999999999999999986552   2245666666666655 5567888999992         22333333 33


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC----eEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEe
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA----ALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSC  158 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~----piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      ..+|.++.|.|+++|.--.... -....++.-+.+..    .++=|-||.|..+....+            +.+ ..+.+
T Consensus       256 aeadlllHvvDiShP~ae~q~e-~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~------------E~n-~~v~i  321 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRE-TVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE------------EKN-LDVGI  321 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHH-HHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc------------ccC-Ccccc
Confidence            4699999999999886433333 33333443222322    356778888865422211            111 16789


Q ss_pred             eccCCCCHHHHHHHHHhhhh
Q 030233          159 SAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ||++|.|++++.+.+-.++.
T Consensus       322 saltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  322 SALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             ccccCccHHHHHHHHHHHhh
Confidence            99999999999998877654

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=2.8e-10  Score=78.41  Aligned_cols=160  Identities=21%  Similarity=0.253  Sum_probs=100.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccc----cCccceeEEEEEECCeEEEEEEcCCChhhHHH---HHhhccCCCEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTT----TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL---WRHYFRDTLGLT   89 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~---~~~~~~~~d~ii   89 (181)
                      +.+|+++|...+||||+......+..|..    ..|...+...+...-+++++||.||+..+-.-   ....++.+-+++
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            36799999999999999887776654432    22333333334345578999999997654321   456778899999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCC----HHHHHhhh----CccccCCccEEEEEee
Q 030233           90 FVVDSSDRERISEARNELHQILSD--NELSNAALLVFANKQDLPNVMP----TAEVADKL----ELYSLGQRRWSIQSCS  159 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~S  159 (181)
                      +|+|+.+.  +.+....+.....+  .-.+++.+=+++.|.|.+.+.-    ...+....    .......-.+.|+-+|
T Consensus       107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            99999643  22222222222222  2336788889999999876321    11121111    1111123455677787


Q ss_pred             ccCCCCHHHHHHHHHhhhhc
Q 030233          160 AISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~  179 (181)
                      ..+ ..|-|.|..+.+++..
T Consensus       185 IyD-HSIfEAFSkvVQkLip  203 (347)
T KOG3887|consen  185 IYD-HSIFEAFSKVVQKLIP  203 (347)
T ss_pred             ecc-hHHHHHHHHHHHHHhh
Confidence            654 7888888888887654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.13  E-value=2.2e-10  Score=76.95  Aligned_cols=55  Identities=22%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG   70 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g   70 (181)
                      ..++++++|.+|+|||||+|++.+.......+.+|++.....+ .+..+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcC
Confidence            4589999999999999999999998876667777777654333 235789999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01859 MJ1464 MJ1464

Probab=99.13  E-value=2.8e-10  Score=75.49  Aligned_cols=95  Identities=17%  Similarity=0.084  Sum_probs=62.7

Q ss_pred             hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccE
Q 030233           74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRW  153 (181)
Q Consensus        74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  153 (181)
                      ++.+.....+++|++++|+|+.++.....  ..+...+..   .+.|+++|+||+|+.+....+......     ...+.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~   71 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIK-----ESEGI   71 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHH-----HhCCC
Confidence            35567778888999999999987543221  122222222   368999999999986421111111111     11234


Q ss_pred             EEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          154 SIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      +++.+||++|.|++++++.+.+.+.
T Consensus        72 ~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          72 PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             cEEEEEccccccHHHHHHHHHHHHh
Confidence            6899999999999999999987654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.12  E-value=1.6e-09  Score=79.36  Aligned_cols=157  Identities=15%  Similarity=0.096  Sum_probs=101.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccc-----------------cCccceeEEEEE-------------------
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----------------TPTIGFNVEAVE-------------------   57 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----------------~~~~~~~~~~~~-------------------   57 (181)
                      +...+.+.++|+...|||||.-.+..+...+.                 .-+...+...+-                   
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            44578899999999999999988875542221                 112222222211                   


Q ss_pred             ----ECCeEEEEEEcCCChhhHHHHHh--hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           58 ----YKNKSFCVWDVGGQNKIRALWRH--YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        58 ----~~~~~~~i~d~~g~~~~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                          ..+.-+.+.||.|++.|.+....  .-+..|..++++.+++.  .......-.-++..   ...|+|++++|+|+.
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a---~~lPviVvvTK~D~~  268 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALA---MELPVIVVVTKIDMV  268 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence                13467899999999999876443  44578999999998754  22332222222222   479999999999998


Q ss_pred             CCCCHHHHHhhhC----c--------------------cccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233          132 NVMPTAEVADKLE----L--------------------YSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus       132 ~~~~~~~~~~~~~----~--------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      ++...+.+.+...    .                    ...+..-.|+|.+|+.+|+|++-|.+.+..
T Consensus       269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence            7544333222211    0                    111334679999999999999877665543

>PTZ00258 GTP-binding protein; Provisional

Probab=99.10  E-value=2.2e-09  Score=80.34  Aligned_cols=81  Identities=22%  Similarity=0.231  Sum_probs=54.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEEC-----------------CeEEEEEEcCCChh-
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYK-----------------NKSFCVWDVGGQNK-   73 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~-----------------~~~~~i~d~~g~~~-   73 (181)
                      ...++|+++|.|++|||||+|++.+....  .+ ..|...+...+.+.                 +.++.+.|+||-.. 
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            45689999999999999999999776521  11 12223333333332                 34589999999321 


Q ss_pred             ------hHHHHHhhccCCCEEEEEEECC
Q 030233           74 ------IRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        74 ------~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                            ........++.+|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                  2223344567899999999973

>cd01858 NGP_1 NGP-1

Probab=99.09  E-value=5.8e-10  Score=74.02  Aligned_cols=55  Identities=18%  Similarity=0.241  Sum_probs=44.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG   70 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g   70 (181)
                      ..++++++|.+|+|||||+|++.+.......++.|.+.....+ .+..+.+.||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence            4678999999999999999999998877777777766655443 234588999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.4e-09  Score=84.48  Aligned_cols=111  Identities=18%  Similarity=0.215  Sum_probs=78.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccC----------cc------ceeEE--EEEE-------CCeEEEEEEcC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----------TI------GFNVE--AVEY-------KNKSFCVWDVG   69 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----------~~------~~~~~--~~~~-------~~~~~~i~d~~   69 (181)
                      ....+++++|+-++|||+|+..+....-++...          +.      |...+  ....       ...-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            345679999999999999999998765332211          10      11111  1111       34678999999


Q ss_pred             CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233           70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL  130 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~  130 (181)
                      ||..+.......++.+|++++|+|+.+.-.+... ..+....+    .+.|+++|+||.|.
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq----~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQ----NRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHh----ccCcEEEEEehhHH
Confidence            9999999998999999999999999765444333 22333333    47999999999996

>cd01855 YqeH YqeH

Probab=99.08  E-value=7.3e-10  Score=75.87  Aligned_cols=99  Identities=19%  Similarity=0.087  Sum_probs=64.4

Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhh---Ccccc
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKL---ELYSL  148 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~---~~~~~  148 (181)
                      .+...+..+++.+|++++|+|+.++..-     +...+...  ..+.|+++|+||+|+.+... ........   .....
T Consensus        23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence            3577888899999999999999875311     11111111  14689999999999865332 22222211   00101


Q ss_pred             CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          149 GQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ......++.+||++|+|++++++.+.+.+.
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            111235899999999999999999988653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01900 YchF YchF subfamily

Probab=99.06  E-value=9.9e-10  Score=78.76  Aligned_cols=76  Identities=22%  Similarity=0.243  Sum_probs=50.8

Q ss_pred             EEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECC-----------------eEEEEEEcCCChh------
Q 030233           20 LLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKN-----------------KSFCVWDVGGQNK------   73 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----------------~~~~i~d~~g~~~------   73 (181)
                      |+++|.|++|||||+|++.+.....   ...|.......+.+.+                 ..+.++|+||-..      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999876421   1223333444444432                 2599999999321      


Q ss_pred             -hHHHHHhhccCCCEEEEEEECC
Q 030233           74 -IRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        74 -~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                       ........++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1222334557899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.06  E-value=8.8e-10  Score=81.79  Aligned_cols=88  Identities=18%  Similarity=0.146  Sum_probs=62.3

Q ss_pred             hhccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEe
Q 030233           80 HYFRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSC  158 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      ..+.++|.+++|+|+.++. ....+..++... ..   .++|+++|+||+|+......+.....+     ...+..++.+
T Consensus        85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~~i  155 (352)
T PRK12289         85 PPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPLFI  155 (352)
T ss_pred             hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEEEE
Confidence            3467899999999998775 333455555544 22   579999999999997532222222222     2234579999


Q ss_pred             eccCCCCHHHHHHHHHhh
Q 030233          159 SAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~  176 (181)
                      ||.+|+|++++++.+..+
T Consensus       156 SA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EcCCCCCHHHHhhhhccc
Confidence            999999999999988754

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.04  E-value=2.3e-09  Score=79.38  Aligned_cols=78  Identities=23%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-----------------eEEEEEEcCCChh----
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-----------------KSFCVWDVGGQNK----   73 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-----------------~~~~i~d~~g~~~----   73 (181)
                      ++|+++|.|++|||||+|++.+....  .+ ..|.......+.+.+                 ..+.+.|+||-..    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            78999999999999999999987621  11 122233333333322                 3689999999321    


Q ss_pred             ---hHHHHHhhccCCCEEEEEEECC
Q 030233           74 ---IRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        74 ---~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1122334567899999999984

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=8.9e-09  Score=75.57  Aligned_cols=79  Identities=19%  Similarity=0.286  Sum_probs=53.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC-------cccccCccceeEEE--------------EEECCeEEEEEEcCCCh---
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE-------IVTTTPTIGFNVEA--------------VEYKNKSFCVWDVGGQN---   72 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~-------~~~~~~~~~~~~~~--------------~~~~~~~~~i~d~~g~~---   72 (181)
                      .++++++|.|++|||||+|.+....       |.+-.|..|.....              -......+.++|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            4789999999999999999998765       11222333322211              01234678999999832   


Q ss_pred             ----hhHHHHHhhccCCCEEEEEEECC
Q 030233           73 ----KIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        73 ----~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                          -+.......++++|+++.|+|..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                23344556778899999999886

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.03  E-value=4.1e-10  Score=85.62  Aligned_cols=156  Identities=18%  Similarity=0.259  Sum_probs=108.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE---EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA---VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      .++|++++|..++|||+|+.+++.+.+.....+.+-.+..   +......+.+.|.+|....     .+....|++|+||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a-----Qft~wvdavIfvf  103 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA-----QFCQWVDAVVFVF  103 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCchh-----hhhhhccceEEEE
Confidence            3689999999999999999999988865544444433222   3336678888999985442     2555689999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      .+.+..+++.+......+-.......+|.++++++.-.....+  ..+.+...  .........+|++++..|-++...|
T Consensus       104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~--l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQ--LSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHH--HHHhcCccceeecchhhhhhHHHHH
Confidence            9999999998877776665443345788888888753211111  11111111  1113344579999999999999999


Q ss_pred             HHHHhhhh
Q 030233          171 DWLSNNIS  178 (181)
Q Consensus       171 ~~i~~~~~  178 (181)
                      ..++.++.
T Consensus       182 ~~~~~k~i  189 (749)
T KOG0705|consen  182 QEVAQKIV  189 (749)
T ss_pred             HHHHHHHH
Confidence            99988764

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=99.02  E-value=2.1e-09  Score=75.07  Aligned_cols=131  Identities=24%  Similarity=0.293  Sum_probs=92.2

Q ss_pred             cceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCCC
Q 030233           49 IGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----------RERISEARNELHQILSDNELSN  118 (181)
Q Consensus        49 ~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~  118 (181)
                      .|+...+++....+|+.+|++|+.+-+.-|...+.+..++|+|+..+.          ...+.+....+..+.+.++...
T Consensus       190 sGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t  269 (379)
T KOG0099|consen  190 SGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT  269 (379)
T ss_pred             cceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh
Confidence            344455666688899999999999999999999999999999987653          1246666777888888888888


Q ss_pred             CeEEEEEeCCCCCCCCC------HH------------------------HHHhhhC--cc--------ccCCccEEEEEe
Q 030233          119 AALLVFANKQDLPNVMP------TA------------------------EVADKLE--LY--------SLGQRRWSIQSC  158 (181)
Q Consensus       119 ~piilv~nK~D~~~~~~------~~------------------------~~~~~~~--~~--------~~~~~~~~~~~~  158 (181)
                      +.+|+++||-|+..+..      .+                        .++..+-  ..        .-+.+-+.+.++
T Consensus       270 isvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFT  349 (379)
T KOG0099|consen  270 ISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT  349 (379)
T ss_pred             hheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccccee
Confidence            99999999999854210      00                        0111000  00        001233456678


Q ss_pred             eccCCCCHHHHHHHHHhhhhc
Q 030233          159 SAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      .|.+-++|..+|....+.+..
T Consensus       350 cAvDTenIrrVFnDcrdiIqr  370 (379)
T KOG0099|consen  350 CAVDTENIRRVFNDCRDIIQR  370 (379)
T ss_pred             EeechHHHHHHHHHHHHHHHH
Confidence            899999999999987766543

>PRK12288 GTPase RsgA; Reviewed

Probab=99.00  E-value=2.8e-09  Score=79.14  Aligned_cols=89  Identities=18%  Similarity=0.114  Sum_probs=64.8

Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      ..++|.+++|++...+.++..+..|+.... .   .++|+++|+||+|+......+........  +...+.+++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-T---LGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-h---cCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence            356899999999987788888888876442 2   47899999999999754322222222211  12234589999999


Q ss_pred             CCCCHHHHHHHHHhh
Q 030233          162 SGQGLYEGLDWLSNN  176 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~  176 (181)
                      +++|++++++.+...
T Consensus       192 tg~GideL~~~L~~k  206 (347)
T PRK12288        192 TGEGLEELEAALTGR  206 (347)
T ss_pred             CCcCHHHHHHHHhhC
Confidence            999999999998764

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.00  E-value=1.2e-09  Score=80.36  Aligned_cols=58  Identities=17%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG   70 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g   70 (181)
                      ......+++++|-|++||||+||++++......++.+|++.....+ .+..+.++||||
T Consensus       128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPG  186 (322)
T COG1161         128 LLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPG  186 (322)
T ss_pred             CCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCC
Confidence            3345688999999999999999999999988888888988777655 445589999999

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=8.1e-09  Score=75.48  Aligned_cols=121  Identities=16%  Similarity=0.183  Sum_probs=82.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEE----------------------------------
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEY----------------------------------   58 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~----------------------------------   58 (181)
                      ..-|+++|.-..|||||++.++.++++...    ||+..-......                                  
T Consensus        58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            456899999999999999999998866432    222211111000                                  


Q ss_pred             -------CCeEEEEEEcCCCh-----------hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe
Q 030233           59 -------KNKSFCVWDVGGQN-----------KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA  120 (181)
Q Consensus        59 -------~~~~~~i~d~~g~~-----------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  120 (181)
                             --..++++||||--           +|.....=+...+|.++++||+...+--++....+..+..+    .-.
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Edk  213 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDK  213 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cce
Confidence                   00358999999922           23344556778899999999998766656666666666544    345


Q ss_pred             EEEEEeCCCCCCCCCHHHHHhhhC
Q 030233          121 LLVFANKQDLPNVMPTAEVADKLE  144 (181)
Q Consensus       121 iilv~nK~D~~~~~~~~~~~~~~~  144 (181)
                      +-+|+||.|..+   .+++.+.++
T Consensus       214 iRVVLNKADqVd---tqqLmRVyG  234 (532)
T KOG1954|consen  214 IRVVLNKADQVD---TQQLMRVYG  234 (532)
T ss_pred             eEEEeccccccC---HHHHHHHHH
Confidence            667899999776   666666554

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.00  E-value=9.6e-10  Score=71.66  Aligned_cols=52  Identities=17%  Similarity=0.237  Sum_probs=39.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE--EEECCeEEEEEEcCCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA--VEYKNKSFCVWDVGGQ   71 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~d~~g~   71 (181)
                      +++++|.+|+|||||+|++.+..........+.+...  +...+ .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence            8999999999999999999988865555555544333  22233 6899999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.99  E-value=3.3e-09  Score=74.00  Aligned_cols=150  Identities=17%  Similarity=0.053  Sum_probs=94.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc--ccccCcccee-EEEEEECCeEEEEEEcCCChhh-------HHHHHhhccCCCE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI--VTTTPTIGFN-VEAVEYKNKSFCVWDVGGQNKI-------RALWRHYFRDTLG   87 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~d~   87 (181)
                      -++.++|-|.+||||++..+.+...  +.+.-|.-++ .....+...++++.|.||--+.       ..+.....+.|..
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl  139 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL  139 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence            3899999999999999999987652  2222222222 2234568889999999983221       1233445677899


Q ss_pred             EEEEEECCCcccHHHHHHH-----------------------------------------HHHHHcCC------------
Q 030233           88 LTFVVDSSDRERISEARNE-----------------------------------------LHQILSDN------------  114 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~-----------------------------------------~~~~~~~~------------  114 (181)
                      +++|+|+..|-+-..+.+.                                         +.....+.            
T Consensus       140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D  219 (358)
T KOG1487|consen  140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD  219 (358)
T ss_pred             EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence            9999999866433322111                                         11100000            


Q ss_pred             ------CCC--CCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          115 ------ELS--NAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       115 ------~~~--~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                            ..+  -+|.++++||.|...   .+++.-.+       .....+.+||.++.|++++++.+.+.+
T Consensus       220 dLIdvVegnr~yVp~iyvLNkIdsIS---iEELdii~-------~iphavpISA~~~wn~d~lL~~mweyL  280 (358)
T KOG1487|consen  220 DLIDVVEGNRIYVPCIYVLNKIDSIS---IEELDIIY-------TIPHAVPISAHTGWNFDKLLEKMWEYL  280 (358)
T ss_pred             hhhhhhccCceeeeeeeeecccceee---eeccceee-------eccceeecccccccchHHHHHHHhhcc
Confidence                  001  248888888888544   44333322       333689999999999999999888764

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.98  E-value=2.7e-09  Score=77.49  Aligned_cols=88  Identities=17%  Similarity=0.109  Sum_probs=64.1

Q ss_pred             HhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233           79 RHYFRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        79 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      ...+.++|.+++|+|+.++. ++..+..|+..+..    .++|+++|+||+|+.+..  +...... .  ....+.+++.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~-~--~~~~g~~v~~  143 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELV-E--ALALGYPVLA  143 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHH-H--HHhCCCeEEE
Confidence            34577899999999999887 77777777665533    378999999999996531  1111111 0  1123458999


Q ss_pred             eeccCCCCHHHHHHHHHh
Q 030233          158 CSAISGQGLYEGLDWLSN  175 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~  175 (181)
                      +||+++.|+++++..+..
T Consensus       144 vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         144 VSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EECCCCccHHHHHhhhcc
Confidence            999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.96  E-value=1.6e-09  Score=74.35  Aligned_cols=132  Identities=20%  Similarity=0.289  Sum_probs=90.1

Q ss_pred             ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCCC
Q 030233           48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS----------DRERISEARNELHQILSDNELS  117 (181)
Q Consensus        48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~  117 (181)
                      |.|+..+.+......+.+.|++|+..-+.-|..++++...+++++.++          ++..+.+....+..++...+..
T Consensus       186 TTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~  265 (359)
T KOG0085|consen  186 TTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ  265 (359)
T ss_pred             cccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc
Confidence            444444455557788999999999888888888888877777765554          2345666677788888888889


Q ss_pred             CCeEEEEEeCCCCCCCCC------------------HHHHHhh----h-CccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233          118 NAALLVFANKQDLPNVMP------------------TAEVADK----L-ELYSLGQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus       118 ~~piilv~nK~D~~~~~~------------------~~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      +.++|+++||.|+.++..                  .+..++.    + ....-..+.+.-..++|.+.+||.-+|..+.
T Consensus       266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk  345 (359)
T KOG0085|consen  266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK  345 (359)
T ss_pred             CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence            999999999999876321                  1111111    1 1111122333445678889999999999887


Q ss_pred             hhhhc
Q 030233          175 NNISV  179 (181)
Q Consensus       175 ~~~~~  179 (181)
                      +-+.+
T Consensus       346 DtiLq  350 (359)
T KOG0085|consen  346 DTILQ  350 (359)
T ss_pred             HHHHH
Confidence            76654

>PRK00098 GTPase RsgA; Reviewed

Probab=98.96  E-value=1.9e-09  Score=78.67  Aligned_cols=88  Identities=18%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             hccCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233           81 YFRDTLGLTFVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      ...++|.+++|+|+.+++..... ..|+..+ ..   .++|+++|+||+|+.+.  .+........  +...+.+++++|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~--~~~~~~~~~~--~~~~g~~v~~vS  148 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDD--LEEARELLAL--YRAIGYDVLELS  148 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCC--HHHHHHHHHH--HHHCCCeEEEEe
Confidence            46789999999999888665554 4454443 33   47899999999998632  2222111111  122345799999


Q ss_pred             ccCCCCHHHHHHHHHhh
Q 030233          160 AISGQGLYEGLDWLSNN  176 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~  176 (181)
                      |++++|++++++.+...
T Consensus       149 A~~g~gi~~L~~~l~gk  165 (298)
T PRK00098        149 AKEGEGLDELKPLLAGK  165 (298)
T ss_pred             CCCCccHHHHHhhccCc
Confidence            99999999999887543

>cd01858 NGP_1 NGP-1

Probab=98.93  E-value=5.9e-09  Score=69.19  Aligned_cols=91  Identities=16%  Similarity=0.045  Sum_probs=58.3

Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      ..++++|++++|+|+.++..-  ....+...+... ..+.|+++|+||+|+.+..........+..    ......+.+|
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~----~~~~~~~~iS   76 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSK----EYPTIAFHAS   76 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhc----CCcEEEEEee
Confidence            356789999999999876321  122233333221 246899999999999653222222222221    1222368899


Q ss_pred             ccCCCCHHHHHHHHHhhh
Q 030233          160 AISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~  177 (181)
                      |+++.|++++.+.+.+.+
T Consensus        77 a~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          77 INNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccccHHHHHHHHHHHH
Confidence            999999999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=1.5e-08  Score=73.36  Aligned_cols=160  Identities=20%  Similarity=0.223  Sum_probs=104.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC-------Cccc----------ccCccceeEEEEEE--CCeEEEEEEcCCChhhH
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG-------EIVT----------TTPTIGFNVEAVEY--KNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~-------~~~~----------~~~~~~~~~~~~~~--~~~~~~i~d~~g~~~~~   75 (181)
                      +..++|.-+|+...|||||-..+..-       ++..          ....+-++...+.|  ....+.=.|.||+.+|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            34679999999999999998777431       1111          11223344444555  56678888999999999


Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-----HHhhhCccccCC
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-----VADKLELYSLGQ  150 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-----~~~~~~~~~~~~  150 (181)
                      .+...-..+-|+.|+|+.++|. .+.+.++-+....+.   .-..+++++||.|+.++++.-+     +++.+....+..
T Consensus       132 KNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            8877777788999999999873 234444444333332   2356889999999986544333     333444444455


Q ss_pred             ccEEEEEeecc---CCC-------CHHHHHHHHHhhhh
Q 030233          151 RRWSIQSCSAI---SGQ-------GLYEGLDWLSNNIS  178 (181)
Q Consensus       151 ~~~~~~~~Sa~---~~~-------~i~~l~~~i~~~~~  178 (181)
                      .+.+++.-||+   .|.       .|.+|++.+..++.
T Consensus       208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip  245 (449)
T KOG0460|consen  208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP  245 (449)
T ss_pred             CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence            67789988766   342       36666666666543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.91  E-value=5.4e-09  Score=76.02  Aligned_cols=57  Identities=19%  Similarity=0.280  Sum_probs=45.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~   71 (181)
                      ...++++++|.+|+|||||+|++.+.......+.+|++...... .+..+.++||||-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCc
Confidence            35689999999999999999999998876667777766655333 3456899999993

>cd01859 MJ1464 MJ1464

Probab=98.90  E-value=6e-09  Score=69.05  Aligned_cols=55  Identities=22%  Similarity=0.284  Sum_probs=43.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG   70 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g   70 (181)
                      ...+++++|.+++||||++|++.+.......++.+++...... .+..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence            4678999999999999999999987766677777766443222 345799999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.90  E-value=6.8e-09  Score=73.06  Aligned_cols=157  Identities=15%  Similarity=0.100  Sum_probs=94.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc-cc-ccCccceeEEE-EEECCeEEEEEEcCC----------ChhhHHHHHhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VT-TTPTIGFNVEA-VEYKNKSFCVWDVGG----------QNKIRALWRHY   81 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~-~~~~~~~~~~~-~~~~~~~~~i~d~~g----------~~~~~~~~~~~   81 (181)
                      .++..+.++|.+++|||||+|.++.... .. ..++.|.+... ...-+..+.+.|.||          ..++......+
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y  213 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY  213 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence            5678999999999999999999988762 22 22355544332 223566788999999          12344444444


Q ss_pred             cc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------HHHHHhhhCccc--cCC
Q 030233           82 FR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP------TAEVADKLELYS--LGQ  150 (181)
Q Consensus        82 ~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------~~~~~~~~~~~~--~~~  150 (181)
                      +.   +--.+++++|++.+  ++..+......+.+   .++|..+|+||||.....-      ...+...+....  .-.
T Consensus       214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~  288 (320)
T KOG2486|consen  214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL  288 (320)
T ss_pred             HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence            43   23456667777643  33333333333444   5899999999999754211      111111111000  011


Q ss_pred             ccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          151 RRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      ...+++.+|+.++.|++++.-.+.+-
T Consensus       289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  289 VDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             ccCCceeeecccccCceeeeeehhhh
Confidence            23356789999999999987766543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.89  E-value=5.2e-09  Score=75.71  Aligned_cols=56  Identities=16%  Similarity=0.248  Sum_probs=43.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ   71 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~   71 (181)
                      ..++++++|.+|+|||||+|++.+.......+.+|++.....+ -+..+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCCCEEEEECCCc
Confidence            4689999999999999999999988766656666665544333 2246899999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01856 YlqF YlqF

Probab=98.88  E-value=5.9e-09  Score=70.19  Aligned_cols=57  Identities=16%  Similarity=0.256  Sum_probs=42.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~   71 (181)
                      ...++++++|.+++|||||+|++.+.......+..+++.....+ .+..+.++||||-
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence            34579999999999999999999988765555555554443322 1256899999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=4.3e-08  Score=67.81  Aligned_cols=123  Identities=12%  Similarity=0.174  Sum_probs=71.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccc-------cCccceeE---EE--EEEC--CeEEEEEEcCCChh--------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-------TPTIGFNV---EA--VEYK--NKSFCVWDVGGQNK--------   73 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-------~~~~~~~~---~~--~~~~--~~~~~i~d~~g~~~--------   73 (181)
                      ..|+|+++|.+|.||||++|.+........       .|.+.+..   ..  +.-.  ..++.++||||..+        
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            489999999999999999999976542211       12111111   11  1112  35788999999221        


Q ss_pred             -------------hHH-----HHHhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           74 -------------IRA-----LWRHYFR--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        74 -------------~~~-----~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                                   |..     .+...+.  ..++++|.+..+. .++.-++..+.+-+..    -+.+|.|+-|+|-.--
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence                         111     1222222  3578888888773 4555544433332222    3668899999997654


Q ss_pred             CCHHHHHhhh
Q 030233          134 MPTAEVADKL  143 (181)
Q Consensus       134 ~~~~~~~~~~  143 (181)
                      +....++...
T Consensus       200 eEr~~FkqrI  209 (336)
T KOG1547|consen  200 EERSAFKQRI  209 (336)
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.87  E-value=4.6e-09  Score=78.64  Aligned_cols=99  Identities=21%  Similarity=0.211  Sum_probs=65.1

Q ss_pred             ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhC--ccc
Q 030233           71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLE--LYS  147 (181)
Q Consensus        71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~--~~~  147 (181)
                      .+++..+...+.+.++++++|+|+.+..+     .|...+.+..  .+.|+++|+||+|+.+.. ..+.+.....  ...
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence            66788888888899999999999976431     1222222211  257999999999986532 2333332211  000


Q ss_pred             cCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          148 LGQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      .+.....++.+||++|.|++++++.+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            11111248999999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01855 YqeH YqeH

Probab=98.87  E-value=6.7e-09  Score=71.10  Aligned_cols=55  Identities=20%  Similarity=0.323  Sum_probs=40.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc--------ccccCccceeEEEEEEC-CeEEEEEEcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI--------VTTTPTIGFNVEAVEYK-NKSFCVWDVGG   70 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~i~d~~g   70 (181)
                      ...+++++|.+|+|||||+|++.+...        ...++.+|++.....+. +..+.++||||
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG  189 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPG  189 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcC
Confidence            346899999999999999999997542        23345556666554442 22689999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=9.8e-08  Score=74.70  Aligned_cols=146  Identities=14%  Similarity=0.255  Sum_probs=86.8

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCccc--ccCccce--------------------------------------
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVT--TTPTIGF--------------------------------------   51 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~--~~~~~~~--------------------------------------   51 (181)
                      .......+|++.|..++||||++|+++..+..+  ..+++..                                      
T Consensus       104 ~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~  183 (749)
T KOG0448|consen  104 VLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD  183 (749)
T ss_pred             HHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence            344667999999999999999999998755221  1121100                                      


Q ss_pred             ------eEEEEEEC-------CeEEEEEEcCCC---hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCC
Q 030233           52 ------NVEAVEYK-------NKSFCVWDVGGQ---NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNE  115 (181)
Q Consensus        52 ------~~~~~~~~-------~~~~~i~d~~g~---~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~  115 (181)
                            ....+.+.       ...+.+.|.||-   ....+-...+..++|++|+|.++.+.  +......+..-...  
T Consensus       184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~vs~--  259 (749)
T KOG0448|consen  184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKVSE--  259 (749)
T ss_pred             cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHhhc--
Confidence                  00011111       126789999994   33444566677789999999999654  44433333332233  


Q ss_pred             CCCCeEEEEEeCCCCCCCCC--HHHHHhhhC---ccccCCccEEEEEeeccC
Q 030233          116 LSNAALLVFANKQDLPNVMP--TAEVADKLE---LYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus       116 ~~~~piilv~nK~D~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~Sa~~  162 (181)
                       .++.+.++.||+|.....+  .+.+.+...   -.......-.++++||+.
T Consensus       260 -~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  260 -EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             -cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence             2666788889999865322  233444422   111223344688888654

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.85  E-value=6.5e-09  Score=78.77  Aligned_cols=130  Identities=24%  Similarity=0.360  Sum_probs=98.2

Q ss_pred             ccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc----------ccHHHHHHHHHHHHcCCCC
Q 030233           48 TIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR----------ERISEARNELHQILSDNEL  116 (181)
Q Consensus        48 ~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~  116 (181)
                      |.|+....+.+ .+..+.++|++|+...+.-|..++.+++++|+|+++++-          -.+.+....+..+......
T Consensus       222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~  301 (389)
T PF00503_consen  222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF  301 (389)
T ss_dssp             -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence            67888888888 999999999999998889999999999999999998742          2477778889999998888


Q ss_pred             CCCeEEEEEeCCCCCC-----CC---------------CHHHHHhhhC----ccccCC---ccEEEEEeeccCCCCHHHH
Q 030233          117 SNAALLVFANKQDLPN-----VM---------------PTAEVADKLE----LYSLGQ---RRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus       117 ~~~piilv~nK~D~~~-----~~---------------~~~~~~~~~~----~~~~~~---~~~~~~~~Sa~~~~~i~~l  169 (181)
                      .+.|+|+++||.|+..     .+               +.+.....+.    ......   +.+.+..++|.+.+++..+
T Consensus       302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v  381 (389)
T PF00503_consen  302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV  381 (389)
T ss_dssp             TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred             ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence            8999999999999632     11               1122222111    111111   5667889999999999999


Q ss_pred             HHHHHhhh
Q 030233          170 LDWLSNNI  177 (181)
Q Consensus       170 ~~~i~~~~  177 (181)
                      |+.+.+.+
T Consensus       382 ~~~v~~~i  389 (389)
T PF00503_consen  382 FNAVKDII  389 (389)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhcCcC
Confidence            99987653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.83  E-value=1.7e-08  Score=66.86  Aligned_cols=82  Identities=17%  Similarity=0.121  Sum_probs=53.8

Q ss_pred             CEEEEEEECCCcccHHHHHHHHH-HHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELH-QILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      |++++|+|+.++.+...  .++. ..+..   .+.|+++|+||+|+.+..........+.    ......++.+||++|.
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence            68999999987754432  2333 22222   4789999999999965321122111121    1123468999999999


Q ss_pred             CHHHHHHHHHhh
Q 030233          165 GLYEGLDWLSNN  176 (181)
Q Consensus       165 ~i~~l~~~i~~~  176 (181)
                      |++++.+.+.+.
T Consensus        72 gi~~L~~~i~~~   83 (155)
T cd01849          72 GIEKKESAFTKQ   83 (155)
T ss_pred             ChhhHHHHHHHH
Confidence            999999988654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.77  E-value=2.1e-08  Score=66.43  Aligned_cols=56  Identities=14%  Similarity=0.187  Sum_probs=39.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG   70 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g   70 (181)
                      ....+++++|.+|+|||||+|++.+..........+++...... .+..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCC
Confidence            35688999999999999999999987643333333333332222 235689999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.76  E-value=2.6e-08  Score=72.10  Aligned_cols=99  Identities=17%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             cCCCh-hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc
Q 030233           68 VGGQN-KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY  146 (181)
Q Consensus        68 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~  146 (181)
                      .|||. +........+..+|++++|+|+..+.+-..  ..+...+     .+.|+++|+||+|+.+........+.+.  
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~--   74 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE--   74 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH--
Confidence            35643 233456677889999999999976643221  2333333     2579999999999864221222222221  


Q ss_pred             ccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                         ..+..++.+||+++.|++++.+.+.+.+.
T Consensus        75 ---~~~~~vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        75 ---EKGIKALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             ---HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence               12236899999999999999998877654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=1.3e-08  Score=80.24  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=74.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC------------ccc---ccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHH
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE------------IVT---TTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALW   78 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~------------~~~---~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~   78 (181)
                      =+++++-+...|||||+.+++..+            +.+   ...+.|++-..  +.+  .++.+.++|+|||.+|.+..
T Consensus        10 rn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sev   89 (887)
T KOG0467|consen   10 RNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEV   89 (887)
T ss_pred             eEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhh
Confidence            369999999999999999987543            111   11223332221  223  78899999999999999999


Q ss_pred             HhhccCCCEEEEEEECCCc---ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233           79 RHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVFANKQDL  130 (181)
Q Consensus        79 ~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~  130 (181)
                      ....+-+|+.++++|+...   .+..-+++.|        ..+..+++|+||+|.
T Consensus        90 ssas~l~d~alvlvdvvegv~~qt~~vlrq~~--------~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   90 SSASRLSDGALVLVDVVEGVCSQTYAVLRQAW--------IEGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhcCCcEEEEeeccccchhHHHHHHHHH--------HccCceEEEEehhhh
Confidence            9999999999999999743   1222222222        246778999999993

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=3.3e-08  Score=76.37  Aligned_cols=110  Identities=17%  Similarity=0.161  Sum_probs=76.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC-----cc---c-------------ccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE-----IV---T-------------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~-----~~---~-------------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      +|.+.-+-.+||||+-++++.-.     +.   .             ...|+......+.+.+.++.++|||||-+|--.
T Consensus        41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E  120 (721)
T KOG0465|consen   41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE  120 (721)
T ss_pred             ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence            58899999999999999886421     00   0             111222223345668999999999999998888


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      .+..++-.|+.++++|....  .+.......+.+.+   .++|-|.++||+|....
T Consensus       121 VeRALrVlDGaVlvl~aV~G--VqsQt~tV~rQ~~r---y~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  121 VERALRVLDGAVLVLDAVAG--VESQTETVWRQMKR---YNVPRICFINKMDRMGA  171 (721)
T ss_pred             ehhhhhhccCeEEEEEcccc--eehhhHHHHHHHHh---cCCCeEEEEehhhhcCC
Confidence            88889999999999998632  22222222222333   47999999999997543

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.72  E-value=4.8e-07  Score=63.52  Aligned_cols=81  Identities=15%  Similarity=0.077  Sum_probs=52.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC--Ccccc----cCccceeEEEEEE---CCeEEEEEEcCCChhh------HHHHHhh
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG--EIVTT----TPTIGFNVEAVEY---KNKSFCVWDVGGQNKI------RALWRHY   81 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~--~~~~~----~~~~~~~~~~~~~---~~~~~~i~d~~g~~~~------~~~~~~~   81 (181)
                      -.-|+++|++++|||+|+|++++.  .+...    ..|.|+-......   .+..+.++||+|....      .......
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~   86 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA   86 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence            356899999999999999999998  44432    2233333222222   3578999999994322      1122222


Q ss_pred             cc--CCCEEEEEEECCCc
Q 030233           82 FR--DTLGLTFVVDSSDR   97 (181)
Q Consensus        82 ~~--~~d~ii~v~d~~~~   97 (181)
                      +.  -++++||..+....
T Consensus        87 l~~llss~~i~n~~~~~~  104 (224)
T cd01851          87 LATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHhCEEEEeccCccc
Confidence            23  37888888877643

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01856 YlqF YlqF

Probab=98.71  E-value=5.3e-08  Score=65.55  Aligned_cols=90  Identities=19%  Similarity=0.116  Sum_probs=58.8

Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEE
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSI  155 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (181)
                      ......+.++|.+++|+|+.++..-..  ..+...+     .+.|+++|+||+|+.+........+.+.     .....+
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~v   78 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKV   78 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeE
Confidence            445667788999999999986543211  1122211     2478999999999864321112112111     112358


Q ss_pred             EEeeccCCCCHHHHHHHHHhhh
Q 030233          156 QSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      +.+||++++|++++.+.+.+.+
T Consensus        79 i~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          79 LFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             EEEECCCcccHHHHHHHHHHHH
Confidence            9999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.68  E-value=6.5e-08  Score=63.02  Aligned_cols=80  Identities=13%  Similarity=0.113  Sum_probs=49.2

Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      ....+..+|++++|+|+.++.+..  ...+...+.... .+.|+++|+||+|+.++.........+     ...+..+++
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~ii~   76 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVVVF   76 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeEEE
Confidence            345677899999999998775433  112222222211 468999999999986532222222222     122347899


Q ss_pred             eeccCCCC
Q 030233          158 CSAISGQG  165 (181)
Q Consensus       158 ~Sa~~~~~  165 (181)
                      +||.++++
T Consensus        77 iSa~~~~~   84 (141)
T cd01857          77 FSALKENA   84 (141)
T ss_pred             EEecCCCc
Confidence            99998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=1.1e-07  Score=69.84  Aligned_cols=152  Identities=22%  Similarity=0.275  Sum_probs=93.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccc------------------------cCccceeEEE--EEE------------
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTT------------------------TPTIGFNVEA--VEY------------   58 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~------------------------~~~~~~~~~~--~~~------------   58 (181)
                      .++++++|...+|||||+-.+..+...+.                        ..++|++..-  ++|            
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            57999999999999999987765432210                        1123332221  222            


Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhcc--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFR--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT  136 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~  136 (181)
                      ...-+.++|.+|+.+|.......+.  ..|...+|+++...-... .++-+-.++.    -++|.+++++|+|+......
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchhH
Confidence            2346899999999999876554444  368888888886432111 1222222222    37999999999999775333


Q ss_pred             HH----HHhhhCcc---------------------ccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233          137 AE----VADKLELY---------------------SLGQRRWSIQSCSAISGQGLYEGLDWL  173 (181)
Q Consensus       137 ~~----~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i  173 (181)
                      +.    ++..+...                     .......++|-+|..+|+|++-+-..+
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            22    22222110                     002246689999999999998765443

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.8e-08  Score=73.34  Aligned_cols=158  Identities=17%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC----------------------------------cccccCccceeEEEEEEC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE----------------------------------IVTTTPTIGFNVEAVEYK   59 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~   59 (181)
                      |....++.++|+...||||+-..++...                                  ......|.+.....+...
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            4677899999999999999987775411                                  001123455555566668


Q ss_pred             CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-
Q 030233           60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-  135 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-  135 (181)
                      ...+.+.|+||+..|-.....-..++|.-++|+++..   +..|+.--+..+..+......-...|+++||+|.+...- 
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs  235 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS  235 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence            8899999999999988877777788999999998842   123332222222222222224567899999999764211 


Q ss_pred             ---HHH----HHhhhC-ccccCCccEEEEEeeccCCCCHHHHHH
Q 030233          136 ---TAE----VADKLE-LYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus       136 ---~~~----~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                         .++    +...+. +..-......|+++|..+|.++.+...
T Consensus       236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence               111    111221 111133567899999999999987543

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=5.3e-07  Score=69.69  Aligned_cols=139  Identities=13%  Similarity=0.075  Sum_probs=82.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      .++-++++|+||+|||||+.+++..-...+...+.--...+......+++.+.|.  +..++ .....-+|.+++++|.+
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLVlLlIdgn  144 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLVLLLIDGN  144 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--HHHHH-HhHHHhhheeEEEeccc
Confidence            3567889999999999999999875422211111001112333567889999993  33333 33455689999999996


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCcccc--CCccEEEEEeecc
Q 030233           96 DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSL--GQRRWSIQSCSAI  161 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~  161 (181)
                      =  +|.-..-.+..++.++  .-+.++-|++..|+....+ ....++.+.....  -..++.+|..|-.
T Consensus       145 f--GfEMETmEFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         145 F--GFEMETMEFLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             c--CceehHHHHHHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence            3  3433333444555542  2344667889999976544 3444443332211  1245567777754

>TIGR00092 GTP-binding protein YchF

Probab=98.61  E-value=3.5e-07  Score=68.08  Aligned_cols=78  Identities=19%  Similarity=0.092  Sum_probs=54.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc-cc--c-cCccceeEEEEEEC-----------------CeEEEEEEcCCChh---
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI-VT--T-TPTIGFNVEAVEYK-----------------NKSFCVWDVGGQNK---   73 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~--~-~~~~~~~~~~~~~~-----------------~~~~~i~d~~g~~~---   73 (181)
                      ++++++|.|++|||||+|.+.+... ..  + ..|...+...+...                 ...+.+.|.||-..   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999988764 21  1 12233333334332                 24789999999432   


Q ss_pred             ----hHHHHHhhccCCCEEEEEEECC
Q 030233           74 ----IRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        74 ----~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                          ........++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223455677899999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.58  E-value=1.3e-07  Score=70.84  Aligned_cols=55  Identities=22%  Similarity=0.414  Sum_probs=41.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc-----ccccCccceeEEEEEEC-CeEEEEEEcCCCh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI-----VTTTPTIGFNVEAVEYK-NKSFCVWDVGGQN   72 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~   72 (181)
                      .+++++|.+|+|||||+|++++...     ...++.++++.....+. +..+.++||||-.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCC
Confidence            5899999999999999999998542     34455666666555443 2456899999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.56  E-value=1.7e-07  Score=70.45  Aligned_cols=55  Identities=20%  Similarity=0.363  Sum_probs=40.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC-----cccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE-----IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ   71 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~   71 (181)
                      .-++.++|.+|+|||||+|++.+..     ....++.+|++.....+ -+....++||||-
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi  220 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGI  220 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCc
Confidence            3579999999999999999998643     22345666777666554 1233579999995

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.55  E-value=1.6e-07  Score=66.74  Aligned_cols=53  Identities=13%  Similarity=0.175  Sum_probs=33.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCcc---c----eeEEE--EEECCeEEEEEEcCCCh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTI---G----FNVEA--VEYKNKSFCVWDVGGQN   72 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~---~----~~~~~--~~~~~~~~~i~d~~g~~   72 (181)
                      -.++++|.+|+|||||+|++.+..........   +    ++...  +...  .-.++||||-.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~--~~~liDtPG~~  182 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH--GGLIADTPGFN  182 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC--CcEEEeCCCcc
Confidence            36899999999999999999986532221111   1    22222  2222  33799999943

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.55  E-value=2.3e-07  Score=67.58  Aligned_cols=100  Identities=18%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             EcCCChh-hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc
Q 030233           67 DVGGQNK-IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL  145 (181)
Q Consensus        67 d~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~  145 (181)
                      -.|||.. -.......+..+|++++|+|+.++.+-.  ...+...+.     +.|+++|+||+|+.+....+...+.+. 
T Consensus         6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-   77 (287)
T PRK09563          6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSE--NPMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-   77 (287)
T ss_pred             CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH-
Confidence            3566533 2344566778999999999997664322  123333332     579999999999864221222222221 


Q ss_pred             cccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          146 YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                          ..+.+++.+||+++.|++++.+.+.+.+.
T Consensus        78 ----~~~~~vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         78 ----EQGIKALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             ----HcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence                11246899999999999999998877654

>PRK12289 GTPase RsgA; Reviewed

Probab=98.54  E-value=2.6e-07  Score=68.79  Aligned_cols=52  Identities=15%  Similarity=0.165  Sum_probs=34.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccc-------eeEEE--EEECCeEEEEEEcCCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIG-------FNVEA--VEYKNKSFCVWDVGGQ   71 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~i~d~~g~   71 (181)
                      .++++|.+|+|||||+|++++..........+       ++...  +...+ ...++||||-
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~  234 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGF  234 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCc
Confidence            37999999999999999999876443333333       22222  22222 2379999993

>PRK13796 GTPase YqeH; Provisional

Probab=98.53  E-value=5.7e-07  Score=67.61  Aligned_cols=99  Identities=24%  Similarity=0.199  Sum_probs=58.3

Q ss_pred             hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCcc--cc
Q 030233           72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELY--SL  148 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~--~~  148 (181)
                      +++.............+++|+|+.+..+  .....+..+.     .+.|+++|+||+|+.+.. ..+.+.......  ..
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence            4555544444333448999999976321  1122222222     257899999999997532 222332221110  00


Q ss_pred             CCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          149 GQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      +.....++.+||++|.|++++++.+.+..
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            11112589999999999999999997654

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.52  E-value=1.3e-06  Score=74.71  Aligned_cols=110  Identities=19%  Similarity=0.262  Sum_probs=64.9

Q ss_pred             EEEEcCCCCChHHHHHhhhcCCcccc-----cCc--cceeEEEEEE-CCeEEEEEEcCCC--------hhhHHHHHhhc-
Q 030233           20 LLMVGLDASGKTTILYKMKLGEIVTT-----TPT--IGFNVEAVEY-KNKSFCVWDVGGQ--------NKIRALWRHYF-   82 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~--~~~~~~~~~~-~~~~~~i~d~~g~--------~~~~~~~~~~~-   82 (181)
                      .+++|++|+||||++++- |-.++-.     ..+  .+-+. .+.+ -...-.++||+|.        +.....|..++ 
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~  191 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG  191 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence            699999999999999877 3333221     111  11111 1211 2234459999991        12233344433 


Q ss_pred             --------cCCCEEEEEEECCCc-----ccH----HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           83 --------RDTLGLTFVVDSSDR-----ERI----SEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        83 --------~~~d~ii~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                              +..+++|+++|+.+-     +..    ..++..+.++.+. -....||.++++|+|+..
T Consensus       192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence                    357999999998642     111    2333444444333 225799999999999874

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.51  E-value=1.9e-07  Score=69.49  Aligned_cols=54  Identities=13%  Similarity=0.155  Sum_probs=33.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccc-------eeEEE--EEECCeEEEEEEcCCChh
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIG-------FNVEA--VEYKNKSFCVWDVGGQNK   73 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~i~d~~g~~~   73 (181)
                      .++++|.+|+|||||+|+|++..........+       ++...  +.+.. ...++||||-..
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~  269 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVRE  269 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCc
Confidence            37999999999999999999876333222211       12111  22222 235999999443

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.47  E-value=1.3e-06  Score=58.07  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -+.+.|..|+|||||+++++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3679999999999999998765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.46  E-value=6.5e-07  Score=63.39  Aligned_cols=112  Identities=14%  Similarity=0.201  Sum_probs=72.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEE----CCeEEEEEEcCCCh-------hh-----
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEY----KNKSFCVWDVGGQN-------KI-----   74 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~i~d~~g~~-------~~-----   74 (181)
                      ..++|+.+|..|.|||||+..+.+..+...     .|+......++..    -..++.+.||.|..       .|     
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            379999999999999999999998775432     2233332223322    23578899999821       11     


Q ss_pred             --HHHHHhhc-------------c--CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           75 --RALWRHYF-------------R--DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        75 --~~~~~~~~-------------~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                        .++.+.++             +  ..++++|.+..+ ..++..++....+-+.    .++.||.++-|.|-..
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhhh
Confidence              11111111             1  357888888887 4677777665544443    3677888889999655

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.46  E-value=2.5e-07  Score=61.07  Aligned_cols=24  Identities=13%  Similarity=0.300  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -.++++|++|+|||||+|.+.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999999875

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.46  E-value=9.5e-07  Score=64.16  Aligned_cols=81  Identities=23%  Similarity=0.214  Sum_probs=54.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEE-----------------CCeEEEEEEcCCChh-
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEY-----------------KNKSFCVWDVGGQNK-   73 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~-----------------~~~~~~i~d~~g~~~-   73 (181)
                      ..+++++++|.|++|||||+|.+.+.....   ...|+.-+..++..                 ....++++|++|.-+ 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            467899999999999999999998766331   12233333333332                 336799999998322 


Q ss_pred             ---h---HHHHHhhccCCCEEEEEEECC
Q 030233           74 ---I---RALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        74 ---~---~~~~~~~~~~~d~ii~v~d~~   95 (181)
                         .   ..-...-++.+|+++-|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence               1   222444557789999988775

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=1.4e-07  Score=67.62  Aligned_cols=157  Identities=14%  Similarity=0.130  Sum_probs=96.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc------ccCc--cceeEEEE---------------------------EE-
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT------TTPT--IGFNVEAV---------------------------EY-   58 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~------~~~~--~~~~~~~~---------------------------~~-   58 (181)
                      +-.++|.-+|+.-.||||++..+.|-....      ...|  +|+....+                           +. 
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            457999999999999999999997743111      1111  11111000                           00 


Q ss_pred             -------CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHH--HHHHHHcCCCCCCCeEEEEEeCCC
Q 030233           59 -------KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN--ELHQILSDNELSNAALLVFANKQD  129 (181)
Q Consensus        59 -------~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~--~~~~~~~~~~~~~~piilv~nK~D  129 (181)
                             --..+.+.|.||++-.-+....-..-.|+.++++..+....-.+..+  ..-++++.     ..++++-||.|
T Consensus       116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L-----khiiilQNKiD  190 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL-----KHIIILQNKID  190 (466)
T ss_pred             CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-----ceEEEEechhh
Confidence                   01357899999987654443333333577888887765321111111  11222222     45788899999


Q ss_pred             CCCCCCHH----HHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          130 LPNVMPTA----EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       130 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      +..+.+..    ++.++..-.  ...+.+++++||.-..|++-+.++|.+++.
T Consensus       191 li~e~~A~eq~e~I~kFi~~t--~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  191 LIKESQALEQHEQIQKFIQGT--VAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             hhhHHHHHHHHHHHHHHHhcc--ccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            98754433    333333222  335668999999999999999999999875

>PRK14974 cell division protein FtsY; Provisional

Probab=98.43  E-value=4.7e-06  Score=61.72  Aligned_cols=139  Identities=18%  Similarity=0.166  Sum_probs=74.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC------Cc--c--c-c-----------cCccceeEEEE-----------------E
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG------EI--V--T-T-----------TPTIGFNVEAV-----------------E   57 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~------~~--~--~-~-----------~~~~~~~~~~~-----------------~   57 (181)
                      ...|+++|++|+||||++..++..      ..  .  + +           ....+......                 .
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~  219 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK  219 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence            567999999999999987777531      10  0  0 0           00111111100                 1


Q ss_pred             ECCeEEEEEEcCCChhhHH----HHHhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           58 YKNKSFCVWDVGGQNKIRA----LWRHYF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        58 ~~~~~~~i~d~~g~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      ..+..+.++||+|......    ......  ...|.+++|+|+............+...       -.+--+++||.|..
T Consensus       220 ~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~  292 (336)
T PRK14974        220 ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDAD  292 (336)
T ss_pred             hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCC
Confidence            1345799999999653221    111221  2478899999996432221112222221       12346889999985


Q ss_pred             CCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233          132 NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      .... ..+.-..      ..+.|+..++  +|++++++..
T Consensus       293 ~~~G-~~ls~~~------~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        293 AKGG-AALSIAY------VIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CCcc-HHHHHHH------HHCcCEEEEe--CCCChhhccc
Confidence            4222 2222211      1234677776  8999987653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.40  E-value=2.9e-05  Score=50.86  Aligned_cols=144  Identities=15%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE--CCeEEEEEEcC-C---------------------C
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY--KNKSFCVWDVG-G---------------------Q   71 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~d~~-g---------------------~   71 (181)
                      ..++|.+.|+||+||||++.++...--.....--|+-...+.-  ...-|.+.|.. |                     -
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v   83 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV   83 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence            4689999999999999999988642111100000111111111  12234444444 1                     0


Q ss_pred             hhhHH----HHHhhccCCCEEEEEEECCCcccH--HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc
Q 030233           72 NKIRA----LWRHYFRDTLGLTFVVDSSDRERI--SEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL  145 (181)
Q Consensus        72 ~~~~~----~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~  145 (181)
                      +.+..    ....+++.+|++|  +|=-.+--+  ....+.++.++.    .+.|+|.++.+.+..  +-.+++++..  
T Consensus        84 ~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr~--P~v~~ik~~~--  153 (179)
T COG1618          84 EGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSRH--PLVQRIKKLG--  153 (179)
T ss_pred             HHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhc----CCCcEEEEEecccCC--hHHHHhhhcC--
Confidence            11121    2344555667665  454333212  234444555544    478888888877641  2223333321  


Q ss_pred             cccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          146 YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                            . .++.   .+.+|-+.+++.+...+..
T Consensus       154 ------~-v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         154 ------G-VYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             ------C-EEEE---EccchhhHHHHHHHHHhcc
Confidence                  1 1232   5667777888888877654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.38  E-value=5e-06  Score=61.29  Aligned_cols=138  Identities=16%  Similarity=0.140  Sum_probs=74.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc--------cc--------------CccceeEEEE-----------------E
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT--------TT--------------PTIGFNVEAV-----------------E   57 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~--------~~--------------~~~~~~~~~~-----------------~   57 (181)
                      .-.++++|++|+||||++..+++.-...        ..              ...+......                 .
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999998886521000        00              0011111100                 0


Q ss_pred             ECCeEEEEEEcCCChhhH-----HHH--Hhh-----ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030233           58 YKNKSFCVWDVGGQNKIR-----ALW--RHY-----FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA  125 (181)
Q Consensus        58 ~~~~~~~i~d~~g~~~~~-----~~~--~~~-----~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  125 (181)
                      ..+..+.++||||.....     .+.  ...     -...+..++|+|++..  ...+.. .....+.    -.+.-+++
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIl  266 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIIL  266 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEE
Confidence            145689999999954311     111  111     1246789999999743  222222 2222111    13447899


Q ss_pred             eCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233          126 NKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus       126 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      ||.|....  .-.+....     ...+.|+..++  +|++++++-
T Consensus       267 TKlD~t~~--~G~~l~~~-----~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        267 TKLDGTAK--GGVVFAIA-----DELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             ECCCCCCC--ccHHHHHH-----HHHCCCEEEEe--CCCChhhCc
Confidence            99996432  11222211     11244677777  888887663

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.37  E-value=3.4e-05  Score=59.83  Aligned_cols=96  Identities=10%  Similarity=0.204  Sum_probs=66.4

Q ss_pred             eEEEEEEcCCC-------------hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030233           61 KSFCVWDVGGQ-------------NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK  127 (181)
Q Consensus        61 ~~~~i~d~~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK  127 (181)
                      ..+.+.|.||-             +...++...+..+..++|+|+--   -|.+..+.....++..-++.+...|+|++|
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence            46889999992             22334566777889999999842   245566667777777777778999999999


Q ss_pred             CCCCCC--CCHHHHHhhhCccccCCccEEEEEee
Q 030233          128 QDLPNV--MPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus       128 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .|+.+.  .++..+.+.++-..+--+...||-+-
T Consensus       489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVV  522 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVV  522 (980)
T ss_pred             cchhhhccCCHHHHHHHHhcCccchhhcceeEEE
Confidence            998654  56677777775443333334466554

>PRK01889 GTPase RsgA; Reviewed

Probab=98.36  E-value=4.5e-06  Score=62.60  Aligned_cols=84  Identities=20%  Similarity=0.204  Sum_probs=55.5

Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      ..++|.+++|+++..+-....+..++..+ ..   .+++.++|+||+|+.+.. .+........    ..+.+++.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a-~~---~~i~piIVLNK~DL~~~~-~~~~~~~~~~----~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALA-WE---SGAEPVIVLTKADLCEDA-EEKIAEVEAL----APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHH-HH---cCCCEEEEEEChhcCCCH-HHHHHHHHHh----CCCCcEEEEECC
Confidence            46789999999996433333344444333 22   467789999999997531 1112222111    235579999999


Q ss_pred             CCCCHHHHHHHHH
Q 030233          162 SGQGLYEGLDWLS  174 (181)
Q Consensus       162 ~~~~i~~l~~~i~  174 (181)
                      +|.|++++..++.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999998885

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.2e-07  Score=70.61  Aligned_cols=121  Identities=17%  Similarity=0.139  Sum_probs=83.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--------cc-------------cccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--------IV-------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--------~~-------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      +|+++.+-.+||||.-.|++.-.        ..             +...|+......+.+.+.++.++||||+.+|+-.
T Consensus        39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le  118 (753)
T KOG0464|consen   39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE  118 (753)
T ss_pred             cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence            68999999999999998886411        00             1122333334456779999999999999999988


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC---CCHHHHHhhhC
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV---MPTAEVADKLE  144 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~---~~~~~~~~~~~  144 (181)
                      .+..++-.|+++.|||++-.-.-+.+ ..|.    ....-++|-+.++||+|....   ...+.+.+.+.
T Consensus       119 verclrvldgavav~dasagve~qtl-tvwr----qadk~~ip~~~finkmdk~~anfe~avdsi~ekl~  183 (753)
T KOG0464|consen  119 VERCLRVLDGAVAVFDASAGVEAQTL-TVWR----QADKFKIPAHCFINKMDKLAANFENAVDSIEEKLG  183 (753)
T ss_pred             HHHHHHHhcCeEEEEeccCCccccee-eeeh----hccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhC
Confidence            89999999999999999743211222 1222    223357999999999998642   23344444443

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.30  E-value=8.4e-07  Score=67.59  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=45.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEE-ECCeEEEEEEcCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVE-YKNKSFCVWDVGG   70 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g   70 (181)
                      .+.|+++|-|+|||||+||.++|++-...+.|+|-+..-.+ .-.-.+.+.|.||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence            48899999999999999999999999999999996544332 3555788999999

>PRK00098 GTPase RsgA; Reviewed

Probab=98.29  E-value=2.8e-06  Score=62.25  Aligned_cols=54  Identities=17%  Similarity=0.135  Sum_probs=34.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccc-------eeE--EEEEECCeEEEEEEcCCCh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG-------FNV--EAVEYKNKSFCVWDVGGQN   72 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~i~d~~g~~   72 (181)
                      ..++++|.+|+|||||+|++++...........       ++.  ..+.... ...++||||-.
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~  227 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFS  227 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcC
Confidence            468999999999999999999866433222111       121  1122222 34789999943

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.28  E-value=3.5e-05  Score=55.71  Aligned_cols=96  Identities=9%  Similarity=0.047  Sum_probs=52.5

Q ss_pred             CCeEEEEEEcCCChhhHHHH----H---hhc-----cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233           59 KNKSFCVWDVGGQNKIRALW----R---HYF-----RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFAN  126 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~----~---~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  126 (181)
                      .+..+.++||||........    .   ...     ..+|.+++|+|++..  -+... ....+.+..    .+--+++|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence            45789999999965432221    1   111     137899999999632  22222 223322211    23578899


Q ss_pred             CCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233          127 KQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus       127 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |.|...... ..+.-..      ..+.|+..++  +|++++++-
T Consensus       226 KlDe~~~~G-~~l~~~~------~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       226 KLDGTAKGG-IILSIAY------ELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             ccCCCCCcc-HHHHHHH------HHCcCEEEEe--CCCChHhCc
Confidence            999754222 1111111      1234677777  888887664

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.26  E-value=2.7e-06  Score=61.97  Aligned_cols=55  Identities=15%  Similarity=0.106  Sum_probs=34.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCc-------cceeEEE--EEECCeEEEEEEcCCChh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPT-------IGFNVEA--VEYKNKSFCVWDVGGQNK   73 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~i~d~~g~~~   73 (181)
                      -.++++|++|+|||||+|.+.+.........       ..++...  +.... ...++||||...
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~  225 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFRE  225 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCc
Confidence            5689999999999999999998653322111       1122222  22221 236899999644

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.22  E-value=7.2e-06  Score=60.66  Aligned_cols=149  Identities=19%  Similarity=0.171  Sum_probs=85.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-----------------ccCc-------ccee---------------EEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-----------------TTPT-------IGFN---------------VEAVE   57 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-----------------~~~~-------~~~~---------------~~~~~   57 (181)
                      +.+++++|...+|||||+-.+..+....                 ...|       +|++               ...++
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            5799999999999999987776543211                 0111       1111               11122


Q ss_pred             E---CCeEEEEEEcCCChhhHHHHH--hhccCCCEEEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           58 Y---KNKSFCVWDVGGQNKIRALWR--HYFRDTLGLTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        58 ~---~~~~~~i~d~~g~~~~~~~~~--~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      +   ....++++|.+|+++|.....  .--+..|...+++-++-.  +-... +-+-..+.    -.+|+.+|++|+|.-
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa----L~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA----LHVPVFVVVTKIDMC  286 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh----hcCcEEEEEEeeccC
Confidence            2   234688999999999876432  222345777777765421  21111 11111122    368999999999976


Q ss_pred             CCCCHHHHHhhh----Cc---------------------cccCCccEEEEEeeccCCCCHHHHHH
Q 030233          132 NVMPTAEVADKL----EL---------------------YSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus       132 ~~~~~~~~~~~~----~~---------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +....++-.+.+    ..                     .+...+-+++|.+|-.+|+|++.+.-
T Consensus       287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm  351 (641)
T KOG0463|consen  287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM  351 (641)
T ss_pred             cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence            543333322211    11                     01123566899999999999976544

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.21  E-value=2.1e-05  Score=51.62  Aligned_cols=58  Identities=12%  Similarity=0.019  Sum_probs=36.6

Q ss_pred             CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030233           60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD  129 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  129 (181)
                      +..+.++||+|.....   ..++..+|-++++....   -.+.........+...      =++++||.|
T Consensus        91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe---~~D~y~~~k~~~~~~~------~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPG---AGDDIQAIKAGIMEIA------DIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChhh---hhHHHhCCEEEEEECCC---chhHHHHhhhhHhhhc------CEEEEeCCC
Confidence            5689999999854322   34777899999988765   2333332222333332      288999987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.18  E-value=4.1e-05  Score=58.42  Aligned_cols=109  Identities=19%  Similarity=0.137  Sum_probs=60.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc------CC-----ccccc-----------CccceeEEEEEE----------------
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL------GE-----IVTTT-----------PTIGFNVEAVEY----------------   58 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~------~~-----~~~~~-----------~~~~~~~~~~~~----------------   58 (181)
                      +-.|+++|.+|+||||++..++.      ..     ...+.           ...++.......                
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            45689999999999999998862      22     00100           011111111100                


Q ss_pred             -CCeEEEEEEcCCChhhHHH----HHhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           59 -KNKSFCVWDVGGQNKIRAL----WRHY--FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        59 -~~~~~~i~d~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                       .+..+.++||||.......    ....  ...++-+++|+|++-...-......|..   .    -.+--+++||.|..
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~~  252 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDGH  252 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccCC
Confidence             2578999999995433211    1111  2246889999998643222222222221   1    23557889999975


Q ss_pred             C
Q 030233          132 N  132 (181)
Q Consensus       132 ~  132 (181)
                      .
T Consensus       253 a  253 (429)
T TIGR01425       253 A  253 (429)
T ss_pred             C
Confidence            4

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=2.1e-05  Score=59.07  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=63.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc----c-----cC---------------ccceeEEEEE-----------ECCe
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT----T-----TP---------------TIGFNVEAVE-----------YKNK   61 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~----~-----~~---------------~~~~~~~~~~-----------~~~~   61 (181)
                      .-.++++|++|+||||++..++......    .     ..               ..++......           +.+.
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            4478999999999999999997532110    0     00               0111111111           1456


Q ss_pred             EEEEEEcCCChhhHHH---HHhhc---cCCCEEEEEEECCC-cccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCCC
Q 030233           62 SFCVWDVGGQNKIRAL---WRHYF---RDTLGLTFVVDSSD-RERISEARNELHQILSDNELSN-AALLVFANKQDLPN  132 (181)
Q Consensus        62 ~~~i~d~~g~~~~~~~---~~~~~---~~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~-~piilv~nK~D~~~  132 (181)
                      .+.++||+|.......   ....+   ....-.++|++++. .+.+......|..........- .+-=++++|.|...
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~  295 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS  295 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence            8999999996533221   11122   23455688999864 3444544444444422210000 12346779999754

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.11  E-value=1.1e-05  Score=55.36  Aligned_cols=106  Identities=14%  Similarity=0.150  Sum_probs=57.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccc----------------------ccCccceeEEEEE-----------------EC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVT----------------------TTPTIGFNVEAVE-----------------YK   59 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~----------------------~~~~~~~~~~~~~-----------------~~   59 (181)
                      .++++|++|+||||.+-+++......                      +....++......                 .+
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~   82 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK   82 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence            58999999999999998886421000                      0111222221110                 13


Q ss_pred             CeEEEEEEcCCChhhHHH----HHhhc--cCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           60 NKSFCVWDVGGQNKIRAL----WRHYF--RDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~----~~~~~--~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      +..+.++||+|.......    ...++  ...+-+++|+|++... .+......+..+       + +-=++++|.|...
T Consensus        83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDet~  154 (196)
T PF00448_consen   83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------G-IDGLILTKLDETA  154 (196)
T ss_dssp             TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------S-TCEEEEESTTSSS
T ss_pred             CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------c-CceEEEEeecCCC
Confidence            467999999995443221    11111  1578899999997442 223222222221       1 1246699999754

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.07  E-value=6.2e-06  Score=59.50  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      ..+++|.+|+|||||+|++....
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~  188 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPEL  188 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchh
Confidence            57899999999999999998744

>PRK13695 putative NTPase; Provisional

Probab=98.06  E-value=0.00026  Score=47.78  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +++++.|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998654

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.06  E-value=5.5e-06  Score=59.65  Aligned_cols=56  Identities=14%  Similarity=0.280  Sum_probs=41.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC-----cccccCccceeEEEEE---E-CCeEEEEEEcCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE-----IVTTTPTIGFNVEAVE---Y-KNKSFCVWDVGG   70 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~-----~~~~~~~~~~~~~~~~---~-~~~~~~i~d~~g   70 (181)
                      ..+++++|+|.||+|||||+|.+....     .....+-+|++...-.   + +.-.+.+.||||
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG  205 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG  205 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence            357899999999999999999886543     3344555666655432   2 556789999999

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.04  E-value=3e-05  Score=56.03  Aligned_cols=88  Identities=19%  Similarity=0.168  Sum_probs=59.3

Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      +.|-.++|+.+.+|+-=....+.+.-+...   .++..++++||+|+.++..... ....  ..+...+.+++.+|++++
T Consensus        79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~~~--~~y~~~gy~v~~~s~~~~  152 (301)
T COG1162          79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KELL--REYEDIGYPVLFVSAKNG  152 (301)
T ss_pred             ccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HHHH--HHHHhCCeeEEEecCcCc
Confidence            367777777777765323333333333333   5777888899999988655553 1211  122456778999999999


Q ss_pred             CCHHHHHHHHHhhh
Q 030233          164 QGLYEGLDWLSNNI  177 (181)
Q Consensus       164 ~~i~~l~~~i~~~~  177 (181)
                      ++++++.+.+..++
T Consensus       153 ~~~~~l~~~l~~~~  166 (301)
T COG1162         153 DGLEELAELLAGKI  166 (301)
T ss_pred             ccHHHHHHHhcCCe
Confidence            99999999887653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.02  E-value=9.6e-05  Score=49.77  Aligned_cols=66  Identities=18%  Similarity=0.100  Sum_probs=38.2

Q ss_pred             CeEEEEEEcCCChhhH----HHHHhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           60 NKSFCVWDVGGQNKIR----ALWRHYF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      +..+.+.|++|.....    .......  ...+.+++|+|......   .......+.+..   + ..-++.||.|...
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence            4568999999964322    1111111  24899999999864432   223344433321   2 3457779999754

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.01  E-value=0.00012  Score=54.15  Aligned_cols=75  Identities=12%  Similarity=0.165  Sum_probs=42.0

Q ss_pred             eEEEEEEcCCChhhHHHHHhhcc--------CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFR--------DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      ....++++.|..+-..+...++.        ..+.++.|+|+.+-.........+...+...+      ++++||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD------~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC------EEEEeccccCC
Confidence            45688999996654444444322        24789999999643211111112222233322      89999999876


Q ss_pred             CCCHHHHHhhh
Q 030233          133 VMPTAEVADKL  143 (181)
Q Consensus       133 ~~~~~~~~~~~  143 (181)
                      +  .+.+...+
T Consensus       165 ~--~~~~~~~l  173 (318)
T PRK11537        165 E--AEKLRERL  173 (318)
T ss_pred             H--HHHHHHHH
Confidence            3  23444444

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=98.01  E-value=8e-05  Score=44.74  Aligned_cols=97  Identities=15%  Similarity=0.083  Sum_probs=55.7

Q ss_pred             EEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHH-HHhhccCCCEEEEEEECCCcc
Q 030233           20 LLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL-WRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      +++.|..|+||||+...++..-..     .+.....+.    .+.++|+++....... .......+|.++++++... .
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~   71 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-L   71 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-h
Confidence            578899999999999888643211     111111111    7899999985443321 1345567899999998763 3


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233           99 RISEARNELHQILSDNELSNAALLVFAN  126 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piilv~n  126 (181)
                      ++...................+..++.|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          72 AVLGARRLTEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence            4444444332222222223455555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.01  E-value=7.2e-05  Score=56.19  Aligned_cols=108  Identities=16%  Similarity=0.248  Sum_probs=61.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCc-ccccC-----------------------ccceeEEEEE-----------ECCe
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEI-VTTTP-----------------------TIGFNVEAVE-----------YKNK   61 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~-----------------------~~~~~~~~~~-----------~~~~   61 (181)
                      .=.|+++|+.|+||||-+-.++.... .....                       .++.....+.           +.+.
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            44689999999999999887765432 11111                       1111111111           1567


Q ss_pred             EEEEEEcCCChhhHHH----HHhhccC--CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCC
Q 030233           62 SFCVWDVGGQNKIRAL----WRHYFRD--TLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQDLPN  132 (181)
Q Consensus        62 ~~~i~d~~g~~~~~~~----~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~  132 (181)
                      .+.++||.|...+...    ...++..  ..-+.+|++++-.  ...+.+.+..+.      ..|+ =++++|.|...
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~------~~~i~~~I~TKlDET~  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFS------LFPIDGLIFTKLDETT  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhc------cCCcceeEEEcccccC
Confidence            8999999996554432    3333332  3446677887633  334444444442      2232 36789999644

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.00  E-value=3.7e-06  Score=62.45  Aligned_cols=67  Identities=19%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             hHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233            4 LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG   70 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g   70 (181)
                      +++.+.+-....+.+.|+++|-|++||||+||.+-....=...|..|.+.....+ -...+.++|.||
T Consensus       294 llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPG  361 (572)
T KOG2423|consen  294 LLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPG  361 (572)
T ss_pred             HHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCC
Confidence            4555555566788999999999999999999999877755556666644322111 234677899999

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=2.6e-05  Score=65.85  Aligned_cols=109  Identities=20%  Similarity=0.283  Sum_probs=64.3

Q ss_pred             EEEEcCCCCChHHHHHhhhcCCcccc-------cCccceeEEEEEE-CCeEEEEEEcCCC--------hhhHHHHHhhc-
Q 030233           20 LLMVGLDASGKTTILYKMKLGEIVTT-------TPTIGFNVEAVEY-KNKSFCVWDVGGQ--------NKIRALWRHYF-   82 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~i~d~~g~--------~~~~~~~~~~~-   82 (181)
                      -+|+|++|+||||++..-- -.|+-.       ....+  +..+++ -...-.++||+|.        +.....|..++ 
T Consensus       128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g--T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG--TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCC--CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            5899999999999985432 222211       11122  122222 3345568899882        23344455442 


Q ss_pred             --------cCCCEEEEEEECCCccc---------HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           83 --------RDTLGLTFVVDSSDRER---------ISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        83 --------~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                              +..+++|+.+|+.+--+         ...++..+.++.+. -....|+.+++||.|+..
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence                    46799999999864211         12233444444332 225799999999999865

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.99  E-value=1.3e-05  Score=54.27  Aligned_cols=119  Identities=17%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhc-C---C--------cccc------cCccceeEEEEEE---------------------C
Q 030233           19 KLLMVGLDASGKTTILYKMKL-G---E--------IVTT------TPTIGFNVEAVEY---------------------K   59 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~-~---~--------~~~~------~~~~~~~~~~~~~---------------------~   59 (181)
                      -+++.|--|||||||+++++. .   .        +...      ....+.....+..                     .
T Consensus         2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~   81 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY   81 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence            368899999999999999993 1   1        1110      0011122221110                     2


Q ss_pred             --CeEEEEEEcCCChhhHHH--HHh---hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           60 --NKSFCVWDVGGQNKIRAL--WRH---YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        60 --~~~~~i~d~~g~~~~~~~--~~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                        .....++++.|...-...  ...   ..-..+.++.|+|+.+-.........+...++..+      ++++||+|+.+
T Consensus        82 ~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~  155 (178)
T PF02492_consen   82 EERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVS  155 (178)
T ss_dssp             HGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHH
T ss_pred             CCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCC
Confidence              357788899984332222  111   11246899999999764444445556666666543      89999999876


Q ss_pred             CC-CHHHHHhhh
Q 030233          133 VM-PTAEVADKL  143 (181)
Q Consensus       133 ~~-~~~~~~~~~  143 (181)
                      .. ..+.+.+..
T Consensus       156 ~~~~i~~~~~~i  167 (178)
T PF02492_consen  156 DEQKIERVREMI  167 (178)
T ss_dssp             HH--HHHHHHHH
T ss_pred             hhhHHHHHHHHH
Confidence            44 224444433

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.98  E-value=4.9e-05  Score=52.01  Aligned_cols=115  Identities=13%  Similarity=0.148  Sum_probs=63.6

Q ss_pred             CeEEEEEEcCCChhhH-------HHHHhhc--cCCCEEEEEEECCC-cccHHHHHHHH---HHHHcCCCCCCCeEEEEEe
Q 030233           60 NKSFCVWDVGGQNKIR-------ALWRHYF--RDTLGLTFVVDSSD-RERISEARNEL---HQILSDNELSNAALLVFAN  126 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~-------~~~~~~~--~~~d~ii~v~d~~~-~~s~~~~~~~~---~~~~~~~~~~~~piilv~n  126 (181)
                      +-.+.++|.||+-+..       .+....-  .---+++|++|..= -++...+...+   ...+.    -.+|-|=|++
T Consensus        97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvls  172 (273)
T KOG1534|consen   97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLS  172 (273)
T ss_pred             cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhh
Confidence            3568999999965422       2221111  11245777777631 12222222222   22222    3689999999


Q ss_pred             CCCCCCCCCHHHHHhhhCcccc---------------------------CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          127 KQDLPNVMPTAEVADKLELYSL---------------------------GQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       127 K~D~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      |+|+......+++.+.+.-...                           ...-+.|.+....+.++++.++..|...++
T Consensus       173 KMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  173 KMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             HHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            9999876555555554431100                           112445777777777788887777766543

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.96  E-value=7.8e-05  Score=46.05  Aligned_cols=102  Identities=12%  Similarity=0.082  Sum_probs=57.8

Q ss_pred             EEE-cCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           21 LMV-GLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        21 ~~~-G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      +++ +..|+||||+...+...-... ...+.-.+....  ....+.++|+|+.....  ....+..+|.++++.+.+ ..
T Consensus         3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~--~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ--FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC--CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hH
Confidence            444 467899999877664322111 111110000000  11278999999854432  334667899999999876 55


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeC
Q 030233           99 RISEARNELHQILSDNELSNAALLVFANK  127 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piilv~nK  127 (181)
                      ++.........+.+........+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            66666666665544322114567777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.96  E-value=7.9e-06  Score=60.63  Aligned_cols=56  Identities=18%  Similarity=0.295  Sum_probs=44.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG   70 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g   70 (181)
                      ...++++|+|-|++||||+||++.....=...+++|++..--.. -+..+.+.|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCc
Confidence            45789999999999999999999988765566666655443222 567889999999

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=4.5e-05  Score=58.58  Aligned_cols=119  Identities=16%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             HHhhhhCCCCccE-EEEEcCCCCChHHHHHhhhcCC------------cccc---cCccceeEEE--EEE----------
Q 030233            7 RLAKRFFPQCRIK-LLMVGLDASGKTTILYKMKLGE------------IVTT---TPTIGFNVEA--VEY----------   58 (181)
Q Consensus         7 ~~~~~~~~~~~~~-i~~~G~~~~GKssl~~~~~~~~------------~~~~---~~~~~~~~~~--~~~----------   58 (181)
                      ++..-+..+++++ +.++.+...|||||-.+++...            +.++   ....+++...  +..          
T Consensus         8 ~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~   87 (842)
T KOG0469|consen    8 QVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLK   87 (842)
T ss_pred             HHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHH
Confidence            3444445555554 8899999999999999997533            1110   0111222211  111          


Q ss_pred             --------CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233           59 --------KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL  130 (181)
Q Consensus        59 --------~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~  130 (181)
                              .+.-+.++|.||+.+|.+....+++-.|+.+.|+|..+.--.+. ...+...+..    ++.-++++||.|.
T Consensus        88 ~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E----RIkPvlv~NK~DR  162 (842)
T KOG0469|consen   88 FIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE----RIKPVLVMNKMDR  162 (842)
T ss_pred             HhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh----hccceEEeehhhH
Confidence                    34678999999999999999999999999999999865321111 1222333332    4566789999995

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.93  E-value=0.00037  Score=44.94  Aligned_cols=37  Identities=24%  Similarity=0.208  Sum_probs=27.1

Q ss_pred             HHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233            5 ISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      +..+.........-.+++.|++|+|||++++.++..-
T Consensus         7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009           7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3444444443345679999999999999999998654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.91  E-value=0.00035  Score=52.92  Aligned_cols=151  Identities=17%  Similarity=0.174  Sum_probs=80.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC-----------------cccc--cCccceeEE--------EEEE---CCeEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE-----------------IVTT--TPTIGFNVE--------AVEY---KNKSFC   64 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~-----------------~~~~--~~~~~~~~~--------~~~~---~~~~~~   64 (181)
                      ...+-|+++|+..+|||||+.||...-                 .|..  ..|+.++.-        .+..   ...++.
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            456889999999999999999997521                 1111  112111111        1222   446888


Q ss_pred             EEEcCCC--------h-----h------------hHHH----HHhhcc--CCCEEEEEEECC----CcccHHHHHH-HHH
Q 030233           65 VWDVGGQ--------N-----K------------IRAL----WRHYFR--DTLGLTFVVDSS----DRERISEARN-ELH  108 (181)
Q Consensus        65 i~d~~g~--------~-----~------------~~~~----~~~~~~--~~d~ii~v~d~~----~~~s~~~~~~-~~~  108 (181)
                      +.|..|.        .     +            |..-    +...++  ..-++++.-|.+    .++.+....+ .+.
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            9998871        0     0            1100    111221  223455555554    1344444433 444


Q ss_pred             HHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc--CCCCHHHHHHHHH
Q 030233          109 QILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI--SGQGLYEGLDWLS  174 (181)
Q Consensus       109 ~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~l~~~i~  174 (181)
                      .+.+.    ++|.++++|-.+-. .....+++..+..    ..+++++.+++.  +-+.|..+++.+.
T Consensus       175 ELk~i----gKPFvillNs~~P~-s~et~~L~~eL~e----kY~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  175 ELKEI----GKPFVILLNSTKPY-SEETQELAEELEE----KYDVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHHHh----CCCEEEEEeCCCCC-CHHHHHHHHHHHH----HhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence            44333    79999999987733 3334445544432    345566766654  3445555555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.91  E-value=0.00013  Score=56.98  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=59.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC----------ccccc--------------CccceeEEEEE-----------ECCe
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE----------IVTTT--------------PTIGFNVEAVE-----------YKNK   61 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~----------~~~~~--------------~~~~~~~~~~~-----------~~~~   61 (181)
                      .-.++++|++|+||||++..++..-          .....              ...++......           ..+.
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            4578999999999999998886421          00000              01111111111           1457


Q ss_pred             EEEEEEcCCChhhHHH----HH--hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           62 SFCVWDVGGQNKIRAL----WR--HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        62 ~~~i~d~~g~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      .+.++||+|.......    ..  .... ....++|++.+.  +.......+..+..     ..+.-+|+||.|...
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~  498 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG  498 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence            8999999995432211    10  1111 235677777753  34444444444322     235679999999744

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.89  E-value=0.00052  Score=50.77  Aligned_cols=91  Identities=16%  Similarity=0.148  Sum_probs=53.4

Q ss_pred             eEEEEEEcCCChhhHHHHHhhcc--------CCCEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFR--------DTLGLTFVVDSSDRER-ISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      ....++++.|-..=..+...+..        ..|.++-|+|+.+-.. .....+.+...+...+      ++++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD------~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD------VIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc------EEEEecccCC
Confidence            56778888883322222222222        3578999999975322 2224455555555433      8999999998


Q ss_pred             CCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233          132 NVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      .+...+.+...+..   -....+++.+|.
T Consensus       159 ~~~~l~~l~~~l~~---lnp~A~i~~~~~  184 (323)
T COG0523         159 DAEELEALEARLRK---LNPRARIIETSY  184 (323)
T ss_pred             CHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence            85544444444432   234557788776

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.87  E-value=6.7e-05  Score=56.57  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-.|+++|++|+||||++..++.
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999999964

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.86  E-value=6e-05  Score=57.49  Aligned_cols=109  Identities=14%  Similarity=0.157  Sum_probs=59.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc----cc-----c---------------CccceeEEEE-----------EECCe
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV----TT-----T---------------PTIGFNVEAV-----------EYKNK   61 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~----~~-----~---------------~~~~~~~~~~-----------~~~~~   61 (181)
                      .-.++++|++|+||||++..+++....    ..     .               ...++.....           ...+.
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~  270 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK  270 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence            347999999999999999988653100    00     0               0111111111           11456


Q ss_pred             EEEEEEcCCChhhH----HHHHhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           62 SFCVWDVGGQNKIR----ALWRHYF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        62 ~~~i~d~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      .+.++||+|.....    .......  ...+-.++|+|++-.  ...+.+.+..+..     -.+-=++++|.|...
T Consensus       271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~  340 (420)
T PRK14721        271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAA  340 (420)
T ss_pred             CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCC
Confidence            78999999954422    1222221  224567889998732  2233333333211     122347789999754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.82  E-value=4e-05  Score=48.96  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      --+.+.|++|+|||+++++++...
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHh
Confidence            347899999999999999998754

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.81  E-value=9.2e-05  Score=39.76  Aligned_cols=44  Identities=25%  Similarity=0.304  Sum_probs=27.6

Q ss_pred             CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030233           84 DTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQD  129 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  129 (181)
                      -.++++|++|++...  +++.....+..+....  .+.|++.|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            468999999999764  4555556666665442  5899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.80  E-value=0.00022  Score=43.70  Aligned_cols=82  Identities=11%  Similarity=0.068  Sum_probs=48.7

Q ss_pred             EEEEc-CCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           20 LLMVG-LDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        20 i~~~G-~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      |++.| ..|+||||+...++..-.....+..-.+..    ....+.++|+|+.....  ....+..+|.++++.+.+ ..
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d----~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~   74 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLD----PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PL   74 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCC----CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HH
Confidence            56677 668999999776653211111111111100    11678999999864332  236667799999999876 45


Q ss_pred             cHHHHHHHHH
Q 030233           99 RISEARNELH  108 (181)
Q Consensus        99 s~~~~~~~~~  108 (181)
                      ++......+.
T Consensus        75 s~~~~~~~~~   84 (104)
T cd02042          75 DLDGLEKLLE   84 (104)
T ss_pred             HHHHHHHHHH
Confidence            5666555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.78  E-value=0.00034  Score=47.35  Aligned_cols=26  Identities=27%  Similarity=0.212  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      -.++++|++|+|||||++.+++-..+
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p   51 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIP   51 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCC
Confidence            46899999999999999999886543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.77  E-value=0.00017  Score=55.48  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+..|+++|.+|+||||++..++.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~  117 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLAR  117 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            356799999999999999988853

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.76  E-value=0.0007  Score=50.63  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             eEEEEEEcCCChhhHHHHHhhc-------cCCCEEEEEEECCCccc--H--------------------HHHHHHHHHHH
Q 030233           61 KSFCVWDVGGQNKIRALWRHYF-------RDTLGLTFVVDSSDRER--I--------------------SEARNELHQIL  111 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~-------~~~d~ii~v~d~~~~~s--~--------------------~~~~~~~~~~~  111 (181)
                      ....++++.|...-..+...+.       -..++++.|+|+.+-..  +                    ......+...+
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            4678899999665444444331       13578999999964210  0                    01122333333


Q ss_pred             cCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhh
Q 030233          112 SDNELSNAALLVFANKQDLPNVMPTAEVADKL  143 (181)
Q Consensus       112 ~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~  143 (181)
                      ...+      ++++||+|+..+...+.+...+
T Consensus       173 ~~AD------~IvlnK~Dl~~~~~l~~~~~~l  198 (341)
T TIGR02475       173 ACAD------LVILNKADLLDAAGLARVRAEI  198 (341)
T ss_pred             HhCC------EEEEeccccCCHHHHHHHHHHH
Confidence            3322      8999999998755555555554

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK10867 signal recognition particle protein; Provisional

Probab=97.73  E-value=0.00038  Score=53.49  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=18.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhh
Q 030233           17 RIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      +..|+++|++|+||||++-.++
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA  121 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLA  121 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHH
Confidence            4568999999999999766664

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.72  E-value=0.00021  Score=49.79  Aligned_cols=45  Identities=20%  Similarity=0.255  Sum_probs=30.8

Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCC
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN-AALLVFANKQDLP  131 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piilv~nK~D~~  131 (181)
                      .+++|.+|.|+|.+ .+++..... +.++.+.   -+ .++.+|+||.|..
T Consensus       153 ~~~vD~vivVvDpS-~~sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~  198 (255)
T COG3640         153 IEGVDLVIVVVDPS-YKSLRTAER-IKELAEE---LGIKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCCCEEEEEeCCc-HHHHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence            35689999999998 455554433 3333333   24 7899999999954

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.72  E-value=3.1e-05  Score=48.83  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .|++.|++||||||+++.++..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

...

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=8.1e-05  Score=56.57  Aligned_cols=23  Identities=39%  Similarity=0.504  Sum_probs=20.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...++++|++|+||||++..++.
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999874

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.70  E-value=0.00029  Score=52.97  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-.++++|++|+||||++..++.
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44689999999999999988864

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.70  E-value=0.00027  Score=45.89  Aligned_cols=104  Identities=13%  Similarity=0.158  Sum_probs=59.7

Q ss_pred             EEcCCCCChHHHHHhhhcCCcccccCccceeEEE-EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccH
Q 030233           22 MVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA-VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI  100 (181)
Q Consensus        22 ~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~  100 (181)
                      .-|.+|+|||++.-.+...-......+.-++... ...-...+.++|+|+..  .......+..+|.++++.+.+ ..++
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~   81 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSI   81 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHH
Confidence            4568899999997666432100000000000000 00011678999999743  233346778899999999986 4555


Q ss_pred             HHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233          101 SEARNELHQILSDNELSNAALLVFANKQDL  130 (181)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~piilv~nK~D~  130 (181)
                      ......+..+....  ...++.+++|+++.
T Consensus        82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          82 TDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             HHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            55445444443321  35577899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.69  E-value=0.00015  Score=56.33  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      --++++|++|+||||++..+++
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHH
Confidence            4689999999999999999875

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.68  E-value=0.00019  Score=48.23  Aligned_cols=53  Identities=21%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   75 (181)
                      ..-+.++|.+|||||||+++++..-..     .+.....+......+.+ |.+|.+.++
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~~-----~g~~vg~Ik~~~~~~~~-d~~g~Ds~~   58 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALCA-----RGIRPGLIKHTHHDMDV-DKPGKDSYE   58 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHhh-----cCCeEEEEEEcCCCccc-CCCCcHHHH
Confidence            446899999999999999999855211     13333445554444444 777754433

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.68  E-value=3.5e-05  Score=54.09  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -++++|++|||||||++-++|-.
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998855

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.00023  Score=57.97  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=59.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccccc------------------------CccceeEEEE-----------EECCeEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTT------------------------PTIGFNVEAV-----------EYKNKSF   63 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~------------------------~~~~~~~~~~-----------~~~~~~~   63 (181)
                      -++++|+.|+||||.+..+++.......                        ...++.....           ...+..+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            5899999999999999998753311100                        0011111100           1145679


Q ss_pred             EEEEcCCChhh----HHHHHhh--ccCCCEEEEEEECCC-cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           64 CVWDVGGQNKI----RALWRHY--FRDTLGLTFVVDSSD-RERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        64 ~i~d~~g~~~~----~~~~~~~--~~~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      .++||+|....    .......  ....+-+++|+|++. .+.+.++...|......     .+-=++++|.|...
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~  337 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEAT  337 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCC
Confidence            99999993321    1222221  123567889999863 23344443333322110     12246789999754

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.66  E-value=4.3e-05  Score=51.67  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+|+++|+||+||||+..+++..
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PRK08118 topology modulation protein; Reviewed

Probab=97.63  E-value=5e-05  Score=50.91  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +|+|+|++|||||||...+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999754

>PRK07261 topology modulation protein; Provisional

Probab=97.63  E-value=4.8e-05  Score=51.21  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+|+++|++|+|||||...+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.62  E-value=0.00067  Score=52.21  Aligned_cols=132  Identities=17%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc----------ccccC--------------ccceeEEEE-----------EECCeEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI----------VTTTP--------------TIGFNVEAV-----------EYKNKSF   63 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~----------~~~~~--------------~~~~~~~~~-----------~~~~~~~   63 (181)
                      .++++|++|+||||++..++....          ....+              ..++.....           ...+..+
T Consensus       223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~Dl  302 (424)
T PRK05703        223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDV  302 (424)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCE
Confidence            689999999999998877753211          00000              011111100           1145789


Q ss_pred             EEEEcCCChhhH----HHHHhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030233           64 CVWDVGGQNKIR----ALWRHYFR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT  136 (181)
Q Consensus        64 ~i~d~~g~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~  136 (181)
                      .++||+|.....    .....++.   ...-+.+|++++-.  ...+...+..+-..    + +--+++||.|.....  
T Consensus       303 VlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~~~--  373 (424)
T PRK05703        303 ILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETSSL--  373 (424)
T ss_pred             EEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccccc--
Confidence            999999964322    12222333   23567788888532  22333333332111    1 225889999975422  


Q ss_pred             HHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233          137 AEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ..+....     ...++++..++  +|.++
T Consensus       374 G~i~~~~-----~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        374 GSILSLL-----IESGLPISYLT--NGQRV  396 (424)
T ss_pred             cHHHHHH-----HHHCCCEEEEe--CCCCC
Confidence            2222222     12333566655  66665

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.62  E-value=0.00017  Score=48.61  Aligned_cols=43  Identities=21%  Similarity=0.160  Sum_probs=28.3

Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHH--HcCCCCCCCeEEEEEeCCCCCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQI--LSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      |++++|+|+.++.+-.  ...+...  +..   .+.|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~--~~~i~~~~~l~~---~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCR--CPQVEEAVLQAG---GNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCC--CHHHHHHHHhcc---CCCCEEEEEehhhcCCH
Confidence            7899999998753221  1222222  222   36899999999999753

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK04195 replication factor C large subunit; Provisional

Probab=97.60  E-value=0.0011  Score=52.05  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .-.+++.|++|+||||+++.+++.
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999865

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.58  E-value=0.0012  Score=48.10  Aligned_cols=104  Identities=13%  Similarity=0.099  Sum_probs=59.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCCh-----------------------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN-----------------------   72 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----------------------   72 (181)
                      +-..++++|++|.|||+++++|.....+..... .        ....+....+|...                       
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~--------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~  130 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-A--------ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRV  130 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-C--------ccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCH
Confidence            346799999999999999999998664432211 1        12244555555421                       


Q ss_pred             -hhHHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030233           73 -KIRALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQ  128 (181)
Q Consensus        73 -~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~  128 (181)
                       .........++...+=++++|=-.   .-+....+..+..+....+.-++|+|.+|++-
T Consensus       131 ~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  131 AKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             HHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence             112223345566777788887421   12233333333333222333689999998753

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>TIGR00959 ffh signal recognition particle protein

Probab=97.58  E-value=0.00071  Score=52.00  Aligned_cols=22  Identities=50%  Similarity=0.604  Sum_probs=18.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhh
Q 030233           17 RIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      +..++++|++|+||||++-.++
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA  120 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLA  120 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHH
Confidence            4579999999999999965554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR00235 udk uridine kinase

Probab=97.57  E-value=7.6e-05  Score=51.81  Aligned_cols=28  Identities=29%  Similarity=0.127  Sum_probs=23.9

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+++..-|++.|++|||||||++.+++.
T Consensus         2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         2 DKPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3566778999999999999999999753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.55  E-value=0.0001  Score=50.79  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT   44 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~   44 (181)
                      =.++++|++|||||||++++.+-..++
T Consensus        29 evv~iiGpSGSGKSTlLRclN~LE~~~   55 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGLEEPD   55 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCcCCC
Confidence            368999999999999999998765443

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.55  E-value=9.3e-05  Score=40.70  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCChHHHHHhhh
Q 030233           19 KLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~   38 (181)
                      ..++.|+.|+||||++..+.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999998875

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.53  E-value=0.00011  Score=51.22  Aligned_cols=69  Identities=16%  Similarity=0.137  Sum_probs=37.8

Q ss_pred             CeEEEEEEcCCChhhH------HHHHhhccCCCEEEEEEEC------CCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEe
Q 030233           60 NKSFCVWDVGGQNKIR------ALWRHYFRDTLGLTFVVDS------SDRERISEARN-ELHQILSDNELSNAALLVFAN  126 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~------~~~~~~~~~~d~ii~v~d~------~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~n  126 (181)
                      ...+.++|.||+-++-      ..+...++..+.-+.++++      ++|..|-...- .+.-++ +   ...|-|=|+.
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl-~---melphVNvlS  171 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML-H---MELPHVNVLS  171 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH-h---hcccchhhhh
Confidence            4578899999964321      1222333445554444443      34555544322 222222 2   3577788899


Q ss_pred             CCCCCC
Q 030233          127 KQDLPN  132 (181)
Q Consensus       127 K~D~~~  132 (181)
                      |+|+..
T Consensus       172 K~Dl~~  177 (290)
T KOG1533|consen  172 KADLLK  177 (290)
T ss_pred             HhHHHH
Confidence            999854

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.53  E-value=7.5e-05  Score=48.50  Aligned_cols=20  Identities=25%  Similarity=0.517  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHhhhc
Q 030233           20 LLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~   39 (181)
                      |+++|++||||||++..+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999974

...

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.53  E-value=9.9e-05  Score=51.31  Aligned_cols=28  Identities=25%  Similarity=0.204  Sum_probs=24.2

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +..+...|++.|++|||||||++.+.+.
T Consensus         2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          2 MMKKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457789999999999999999999764

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.52  E-value=0.00059  Score=51.74  Aligned_cols=109  Identities=24%  Similarity=0.180  Sum_probs=60.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC----C-------cccccC-----------ccceeEEE-------EEE-------
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG----E-------IVTTTP-----------TIGFNVEA-------VEY-------   58 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~----~-------~~~~~~-----------~~~~~~~~-------~~~-------   58 (181)
                      ..+..|+++|-.|+||||.+-.++.-    .       ...+.|           ..++..+.       +.+       
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence            44677999999999999998777531    0       111111           11111111       111       


Q ss_pred             ---CCeEEEEEEcCCChhhHHH------HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030233           59 ---KNKSFCVWDVGGQNKIRAL------WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD  129 (181)
Q Consensus        59 ---~~~~~~i~d~~g~~~~~~~------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  129 (181)
                         ....+.|+||+|.......      .....-..|=+++|+|+.-.+.--+....|..-+..       .=++++|.|
T Consensus       178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKlD  250 (451)
T COG0541         178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKLD  250 (451)
T ss_pred             HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEccc
Confidence               4468999999995443221      112223578999999997554444444444443222       124556666


Q ss_pred             C
Q 030233          130 L  130 (181)
Q Consensus       130 ~  130 (181)
                      .
T Consensus       251 G  251 (451)
T COG0541         251 G  251 (451)
T ss_pred             C
Confidence            4

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.52  E-value=0.0001  Score=51.42  Aligned_cols=25  Identities=28%  Similarity=0.262  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      -++++|++|||||||+|-+.+-..+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccCC
Confidence            4799999999999999998765544

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.52  E-value=0.0018  Score=43.16  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      -.++++|++|+|||||++.+++...+
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~~   52 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGLYKP   52 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46899999999999999999886543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.51  E-value=9.8e-05  Score=41.82  Aligned_cols=21  Identities=29%  Similarity=0.396  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK06547 hypothetical protein; Provisional

Probab=97.51  E-value=0.00018  Score=48.47  Aligned_cols=34  Identities=29%  Similarity=0.310  Sum_probs=27.2

Q ss_pred             HHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            7 RLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ....+..+.....|++.|.+||||||+.+.+...
T Consensus         5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547          5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3444555677788999999999999999999754

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.49  E-value=0.0001  Score=47.51  Aligned_cols=26  Identities=27%  Similarity=0.199  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      =.++++|++|+|||||++.+++...+
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~~~   37 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLLPP   37 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred             CEEEEEccCCCccccceeeecccccc
Confidence            35799999999999999999887544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK01889 GTPase RsgA; Reviewed

Probab=97.47  E-value=0.0001  Score=55.35  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      -+++++|.+|+|||||+|.+++...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999997553

>PRK08233 hypothetical protein; Provisional

Probab=97.47  E-value=0.00013  Score=49.46  Aligned_cols=25  Identities=16%  Similarity=0.226  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +.+-|++.|.+|||||||.++++..
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhh
Confidence            3567899999999999999999754

>PRK14530 adenylate kinase; Provisional

Probab=97.46  E-value=0.00013  Score=51.01  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..+|+++|+|||||||+.+.++.
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999964

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.42  E-value=0.0015  Score=47.18  Aligned_cols=109  Identities=20%  Similarity=0.160  Sum_probs=60.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCc--------cc--------------ccCccceeEEEEE--------------ECC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEI--------VT--------------TTPTIGFNVEAVE--------------YKN   60 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~--------~~--------------~~~~~~~~~~~~~--------------~~~   60 (181)
                      .-+++++|++|+||||++..++..-.        ..              +....++......              ..+
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence            36899999999999999887754210        00              0111122211110              025


Q ss_pred             eEEEEEEcCCChhhH----HHHHhhc--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           61 KSFCVWDVGGQNKIR----ALWRHYF--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~----~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      ..+.++||+|.....    ......+  ...+-+++|+|++-.  .......+..+..     -.+-=++++|.|...
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~  225 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETA  225 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCC
Confidence            689999999965321    1122222  245678999998632  2233333333311     123357889999755

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.0011  Score=49.53  Aligned_cols=84  Identities=25%  Similarity=0.288  Sum_probs=49.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC--------------ccc-------------ccCccc--eeEEE----------E
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE--------------IVT-------------TTPTIG--FNVEA----------V   56 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~--------------~~~-------------~~~~~~--~~~~~----------~   56 (181)
                      ++--|+++|-.|+||||.+..++...              |..             ..|..+  +....          +
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f  179 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF  179 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence            34569999999999999998886411              100             001111  01111          1


Q ss_pred             EECCeEEEEEEcCCChhhHH-HH-----HhhccCCCEEEEEEECCCccc
Q 030233           57 EYKNKSFCVWDVGGQNKIRA-LW-----RHYFRDTLGLTFVVDSSDRER   99 (181)
Q Consensus        57 ~~~~~~~~i~d~~g~~~~~~-~~-----~~~~~~~d~ii~v~d~~~~~s   99 (181)
                      .-++..+.|.||.|.+.-.. +.     ....-..|-+|+|.|++-...
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa  228 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA  228 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence            12678999999999544222 11     112235799999999975433

>PHA00729 NTP-binding motif containing protein

Probab=97.42  E-value=0.00026  Score=49.48  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=28.2

Q ss_pred             HHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            5 ISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..++.+.+....-.+|++.|+||+|||+|+.+++..
T Consensus         5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729          5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            344555565556678999999999999999998754

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.42  E-value=0.00014  Score=48.95  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      =.++++|++|+|||||+|-++|=..
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            3689999999999999999987443

>PF05729 NACHT: NACHT domain

Probab=97.41  E-value=0.0014  Score=43.43  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +.+.|++|+|||+++.+++..
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            689999999999999998753

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.40  E-value=0.00028  Score=47.33  Aligned_cols=22  Identities=32%  Similarity=0.449  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +|++.|++|+||||++.+++..
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999998753

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.40  E-value=9.4e-05  Score=49.33  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ||++.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6899999999999999999865

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.40  E-value=0.00021  Score=47.46  Aligned_cols=51  Identities=29%  Similarity=0.458  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   75 (181)
                      .+.++|.+|+|||||++++...-     ...+.....++.....+.+ |.+|...++
T Consensus         3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~   53 (159)
T cd03116           3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR   53 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence            48999999999999999998531     1223334455554444443 777754433

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.40  E-value=0.0035  Score=42.19  Aligned_cols=66  Identities=9%  Similarity=-0.016  Sum_probs=44.1

Q ss_pred             EEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           62 SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        62 ~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      .+.++|+|+.....  ....+..+|.++++++.. ..++......+..+...   ......+++|+.|....
T Consensus        64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~  129 (179)
T cd02036          64 DYILIDSPAGIERG--FITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV  129 (179)
T ss_pred             CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc---CCceEEEEEeCCccccc
Confidence            79999999854332  334567899999999886 45566555555544332   23456789999987543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.40  E-value=0.0017  Score=47.38  Aligned_cols=20  Identities=25%  Similarity=0.552  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHhhh
Q 030233           19 KLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~   38 (181)
                      .|.+.|.+||||||+++.+.
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999984

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.00013  Score=47.24  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=22.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +..++|++.|.||+|||||..+++.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            4578999999999999999999974

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.39  E-value=0.0019  Score=49.08  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=60.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCc------------c---cc-----------cCccceeEEEEE-----------EC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEI------------V---TT-----------TPTIGFNVEAVE-----------YK   59 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~------------~---~~-----------~~~~~~~~~~~~-----------~~   59 (181)
                      +-.++++|++|+||||.+..++..-.            .   .+           ....++......           ..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            45799999999999999988864210            0   00           001122111111           14


Q ss_pred             CeEEEEEEcCCChhhHH----HHHhhcc---CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           60 NKSFCVWDVGGQNKIRA----LWRHYFR---DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~----~~~~~~~---~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      +..+.++||+|......    .....+.   ...-+++|+|++..  ...+.+.+......     .+-=++++|.|...
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~  326 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT  326 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence            67899999999543211    1222222   12358899999743  33333444443211     13357889999754

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.38  E-value=0.00015  Score=46.28  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |++.|++|+|||++++.++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999765

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.38  E-value=0.0012  Score=43.16  Aligned_cols=26  Identities=23%  Similarity=0.229  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      -.++++|++|+|||||++.+++...+
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~   52 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELEP   52 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            35799999999999999999886543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.00015  Score=53.66  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHhhhcCC
Q 030233           20 LLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      ++++|++|||||||++.++|-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6899999999999999999854

>PRK06217 hypothetical protein; Validated

Probab=97.34  E-value=0.0002  Score=48.75  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+|+|+|.+||||||+..++...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999754

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.34  E-value=0.00063  Score=49.92  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+++-|+++|-.|+||||-+-.++.
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~  161 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAK  161 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHH
Confidence            3578899999999999999988864

>PRK03839 putative kinase; Provisional

Probab=97.33  E-value=0.00021  Score=48.48  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +|+++|.+|+||||+..+++..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.33  E-value=0.0002  Score=46.35  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |+++|++|+|||||++.++..
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999865

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.32  E-value=0.00022  Score=48.65  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999997653

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.31  E-value=0.0002  Score=51.02  Aligned_cols=21  Identities=29%  Similarity=0.309  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -++++|+.|||||||++.+++
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            469999999999999999987

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.31  E-value=0.00021  Score=45.37  Aligned_cols=21  Identities=33%  Similarity=0.423  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |++.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999765

...

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.31  E-value=0.00019  Score=49.44  Aligned_cols=21  Identities=29%  Similarity=0.290  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |++.|++|||||||++.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999999764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.30  E-value=0.00025  Score=45.40  Aligned_cols=27  Identities=30%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT   44 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~   44 (181)
                      -.+++.|++|+|||+++..++..-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            468999999999999999998765433

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.30  E-value=0.00037  Score=49.18  Aligned_cols=27  Identities=22%  Similarity=0.159  Sum_probs=23.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .+.+-+++.|++|+|||||++.+++.-
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            457889999999999999999997643

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.29  E-value=0.00037  Score=48.40  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+..-|+++|++|+|||||++.+...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            34566889999999999999999754

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.29  E-value=0.00036  Score=50.82  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=21.6

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...++-|++.|++||||||+++.+.+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~   84 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQA   84 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999977643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.28  E-value=0.00024  Score=46.20  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .|+++|+.++|||||+..+++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.28  E-value=0.00022  Score=48.31  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .++++|++||||||+++.++..
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.28  E-value=0.00023  Score=48.49  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -++++|++|||||||+|-++|--
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcCc
Confidence            57899999999999999998743

>PTZ00301 uridine kinase; Provisional

Probab=97.27  E-value=0.00029  Score=48.96  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=19.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      +.+-|++.|++|||||||.+.+.
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~   24 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIV   24 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHH
Confidence            34679999999999999998774

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.26  E-value=0.0034  Score=49.54  Aligned_cols=87  Identities=15%  Similarity=0.123  Sum_probs=45.8

Q ss_pred             CEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCCCCHH-----HHHhhhCccccCCccEEEE
Q 030233           86 LGLTFVVDSSD---RERISEARNELHQILSDNELSNA-ALLVFANKQDLPNVMPTA-----EVADKLELYSLGQRRWSIQ  156 (181)
Q Consensus        86 d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  156 (181)
                      -.+|+|=|+-+   .++ ......+...+..   ... |+|++++=+|........     .....+.........+..+
T Consensus       133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~---~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I  208 (519)
T PF03215_consen  133 KKVILVEDLPNVFHRDT-SRFREALRQYLRS---SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRI  208 (519)
T ss_pred             ceEEEeeccccccchhH-HHHHHHHHHHHHc---CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEE
Confidence            34566656633   222 4444455554444   344 999999966543221111     0111111111234456677


Q ss_pred             EeeccCCCCHHHHHHHHHhh
Q 030233          157 SCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       157 ~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      .+.+....-+.+.+..|+..
T Consensus       209 ~FNpIa~T~mkKaL~rI~~~  228 (519)
T PF03215_consen  209 KFNPIAPTFMKKALKRILKK  228 (519)
T ss_pred             EecCCCHHHHHHHHHHHHHH
Confidence            77777777777777777664

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.26  E-value=0.00027  Score=43.46  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhh
Q 030233           18 IKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~   38 (181)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            357999999999999999876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.24  E-value=0.00023  Score=49.90  Aligned_cols=21  Identities=24%  Similarity=0.180  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |++.|++|||||||++.+++.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            689999999999999999754

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.23  E-value=0.00034  Score=52.13  Aligned_cols=24  Identities=29%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             EEEEcCCCCChHHHHHhhhcCCcc
Q 030233           20 LLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      ++++|++||||||+++.++|=..+
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~p   57 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQP   57 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCC
Confidence            689999999999999999985533

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.22  E-value=0.00029  Score=47.66  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .|+++|++|+||||+++.+++..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=97.22  E-value=0.0005  Score=50.66  Aligned_cols=25  Identities=36%  Similarity=0.375  Sum_probs=22.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      ..+|++.|..||||||++|.+++--
T Consensus       173 r~NILisGGTGSGKTTlLNal~~~i  197 (355)
T COG4962         173 RCNILISGGTGSGKTTLLNALSGFI  197 (355)
T ss_pred             ceeEEEeCCCCCCHHHHHHHHHhcC
Confidence            4799999999999999999998653

>PRK14532 adenylate kinase; Provisional

Probab=97.22  E-value=0.00033  Score=47.84  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++|+++|+|||||||+..+++..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999754

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.21  E-value=0.00036  Score=49.20  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..++|+++|+|||||||+...++..
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3577999999999999999999753

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.21  E-value=0.00033  Score=49.00  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|+|||||++.++|-.
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCc
Confidence            357999999999999999999864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.21  E-value=0.00033  Score=45.34  Aligned_cols=22  Identities=32%  Similarity=0.449  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .|+++|++|+|||+++..++..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999988753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.20  E-value=0.00035  Score=48.81  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|+|||||++.++|-.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999864

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.20  E-value=0.00031  Score=47.80  Aligned_cols=21  Identities=33%  Similarity=0.316  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhh
Q 030233           18 IKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~   38 (181)
                      ..|+++|++||||||+++.++
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999997

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14531 adenylate kinase; Provisional

Probab=97.19  E-value=0.00037  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+|+++|+|||||||+...++..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988653

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.19  E-value=0.0021  Score=47.65  Aligned_cols=24  Identities=29%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +.+|++.|++||||||+++.++..
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~  167 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAE  167 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999864

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.18  E-value=0.00036  Score=49.38  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		6e-71
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		1e-67
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		6e-67
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		5e-65
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		8e-65
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-64
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		5e-64
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		1e-63
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		7e-63
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-62
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		1e-61
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		3e-60
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-59
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		3e-59
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-57
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		8e-57
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		1e-56
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-56
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		6e-56
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		6e-56
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		5e-55
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		5e-55
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		8e-54
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		3e-50
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		7e-44
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		7e-44
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-43
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		5e-43
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		8e-43
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		4e-42
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		6e-42
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		7e-42
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		9e-42
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		9e-42
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		1e-40
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		1e-40
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		5e-38
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		2e-37
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		2e-37
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		4e-37
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-36
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-35
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		4e-29
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		3e-25
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		3e-24
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		3e-24
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		5e-24
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-23
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		1e-23
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		5e-21
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		5e-21
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		1e-20
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		2e-20
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		5e-11
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-09
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-09
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-08
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-08
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-08
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-08
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		8e-08
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-07
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-07
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		4e-07
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-07
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		4e-07
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		5e-07
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-07
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		7e-07
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-06
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-06
3cx7_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		1e-06
1zcb_A	362	Crystal Structure Of G Alpha 13 In Complex With Gdp		1e-06
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-06
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-06
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-06
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-06
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-06
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-06
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-06
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-06
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-06
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		3e-06
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-06
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		3e-06
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		4e-06
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		5e-06
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-06
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		6e-06
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		6e-06
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		6e-06
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		6e-06
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		6e-06
4fmc_F	117	Espg-Rab1 Complex Length = 117		7e-06
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		7e-06
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		7e-06
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		8e-06
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		1e-05
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-05
3cx6_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		1e-05
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-05
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-05
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-05
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-05
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		2e-05
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-05
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-05
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-05
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-05
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-05
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-05
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		3e-05
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		4e-05
2bku_A	177	Kap95p:rangtp Complex Length = 177		4e-05
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		5e-05
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-05
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		6e-05
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		6e-05
1byu_A	216	Canine Gdp-Ran Length = 216		6e-05
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		6e-05
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		7e-05
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		8e-05
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		9e-05
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		9e-05
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-04
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		1e-04
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		1e-04
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		1e-04
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		1e-04
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		1e-04
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		1e-04
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		1e-04
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		1e-04
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		1e-04
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		1e-04
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		1e-04
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		1e-04
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		1e-04
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		1e-04
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		1e-04
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-04
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		1e-04
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		1e-04
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-04
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-04
1cul_C	380	Complex Of Gs-Alpha With The Catalytic Domains Of M		2e-04
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		2e-04
3sn6_A	380	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-04
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		2e-04
1azs_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		2e-04
1cs4_C	394	Complex Of Gs-Alpha With The Catalytic Domains Of M		2e-04
1cjk_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		2e-04
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		2e-04
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		2e-04
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		2e-04
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-04
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-04
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-04
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		3e-04
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-04
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		4e-04
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		4e-04
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		4e-04
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		4e-04
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		4e-04
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		5e-04
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-04
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		6e-04
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		6e-04
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-04
2fh5_B	214	The Structure Of The Mammalian Srp Receptor Length		6e-04
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		6e-04
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		8e-04
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		8e-04
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		8e-04
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		8e-04
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		8e-04
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		8e-04

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score =  263 bits (671), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 148/180 (82%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG    +L  R F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 4   MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DR+R+ EAR+ELH++L+++EL +A 
Sbjct: 64  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQDLPN M  AE+ DKL L+SL QR W IQS  A SG+GLYEGLDWLSNNI+ K
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 143/177 (80%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG + + L K  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           LLVFANKQDLPN M  AE+ DKL L+SL  R W IQ+  A SG GLYEGLDWLSN +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score =  249 bits (636), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 142/176 (80%)
Query: 2   GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
           G + + L K  F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN 
Sbjct: 1   GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 60
Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
           SF VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A L
Sbjct: 61  SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 120
Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           LVFANKQDLPN M  AE+ DKL L+SL  R W IQ+  A SG GLYEGLDWLSN +
Sbjct: 121 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 176

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score =  243 bits (619), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 114/160 (71%), Positives = 135/160 (84%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGGQ+KIR L
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A LLVFANKQDLPN M  A
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           E+ DKL L+SL  R W IQ+  A SG GLYEGLDWLSN +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  242 bits (618), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 115/166 (69%), Positives = 137/166 (82%)
Query: 12  FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQ 71
            F +  +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 72  NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
           +KIR LWRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A LLVFANKQDLP
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 132 NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           N M  AE+ DKL L+SL  R W IQ+  A SG GLYEGLDWLSN +
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 111/178 (62%), Positives = 141/178 (79%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  +SRL  R F +  +++LMVGLDA+GKTTILYK+KLGE+VTT PTIGFNVE VE++N
Sbjct: 1   MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHY+ +T GL FVVDS+DRERI +AR ELH+++++ EL +A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
           +LVFANKQDLPN M  AEV +KL L ++ +R W IQS  A  G GLYEG DWL+ +++
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLN 178

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score =  239 bits (611), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/160 (70%), Positives = 134/160 (83%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGG +KIR L
Sbjct: 3   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPL 62
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A LLVFANKQDLPN M  A
Sbjct: 63  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 122
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           E+ DKL L+SL  R W IQ+  A SG GLYEGLDWLSN +
Sbjct: 123 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 162

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score =  238 bits (607), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/178 (64%), Positives = 138/178 (77%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  IS L  R F + ++++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 1   MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F VWDVGGQ++IR LW+HYF++T GL FVVDS+DRERI E  +EL ++L  +EL +A 
Sbjct: 61  ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
           LL+FANKQDLPN M  +E+ DKL L SL  R W +Q+  A  G GLYEGLDWLSN +S
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELS 178

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  236 bits (601), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 136/171 (79%)
Query: 8   LAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWD 67
           L  R F + ++++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN  F VWD
Sbjct: 20  LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
           VGGQ+KIR LWRHYF++T GL FVVDS+DRER+ E+ +EL ++L ++EL +A LLVFANK
Sbjct: 80  VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 128 QDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
           QD+PN MP +E+ DKL L  L  R W +Q+  A  G GLY+GLDWLS+ +S
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score =  234 bits (596), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 107/177 (60%), Positives = 138/177 (77%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG   S+L    F    +++LMVGLD +GKTT+LYK+KLGE++TT PTIGFNVE V+YKN
Sbjct: 1   MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ++IR+LWRHY+R+T G+ FV+DS+DR RI EAR  + ++L+++EL NA 
Sbjct: 61  ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
            LVFANKQDLP  M  AE+ +KL L+S+  R W IQS  A SG+GLYEGL+WLSNN+
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNL 177

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score =  231 bits (590), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 109/180 (60%), Positives = 140/180 (77%), Gaps = 2/180 (1%)
Query: 2   GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
           G   S+L    F    +++LMVGLD +GKTT+LYK+KLGE++TT PTIGFNVE V+YKN 
Sbjct: 2   GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNI 61
Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
           SF VWDVGGQ++IR+LWRHY+R+T G+ FVVDS+DR RI EAR  + ++L+++EL NAA 
Sbjct: 62  SFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAW 121
Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN 181
           LVFANKQDLP  M  AE+ +KL L+S+  R W IQ+  A SG+GLYEGL+WLSN  S+KN
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN--SLKN 179

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score =  227 bits (578), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 105/164 (64%), Positives = 135/164 (82%), Gaps = 2/164 (1%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LMVGLD +GKTT+LYK+KLGE++TT PTIGFNVE V+YKN SF VWDVGGQ++IR+L
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSL 60
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHY+R+T G+ FVVDS+DR RI EAR  + ++L+++EL NAA LVFANKQDLP  M  A
Sbjct: 61  WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN 181
           E+ +KL L+S+  R W IQ+  A SG+GLYEGL+WLSN  S+KN
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN--SLKN 162

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 138/177 (77%), Gaps = 4/177 (2%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG  +S+L      +  +++LMVGLDA+GKT+ILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 5   MGSWLSKL----LGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            SF VWDVGGQ+KIR LWRHY+++T  + FVVDS+DR+RI EAR EL ++L+++E+ NA 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAI 120
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           LLVFANK DLP  M  +EV +KL L ++  R+W  Q+  A +G GLYEGLDWL++N+
Sbjct: 121 LLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 177

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 104/174 (59%), Positives = 134/174 (77%)
Query: 2   GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
           G   S+L    F    +++LMVGLD +GKTT+LYK+KLGE++TT PTIGFNVE V+Y N 
Sbjct: 2   GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI 61
Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
           SF VWDVGGQ++IR+LWRHY+ +T G+ FVVDS+DR RI EAR  + ++L+++EL NAA 
Sbjct: 62  SFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAW 121
Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175
           LVFANKQDLP  M  AE+ +KL L+S+  R W IQ+  A SG+GLYEGL+WLSN
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN 175

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score =  218 bits (555), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 132/176 (75%), Gaps = 4/176 (2%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MGK++S++    F    +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN
Sbjct: 1   MGKVLSKI----FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN 56
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F VWDVGGQ+KIR LWRHY+  T GL FVVD +DR+RI EAR ELH+I++D E+ +A 
Sbjct: 57  VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 116
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           +L+FANKQDLP+ M   E+ +KL L  +  R W +Q   A SG GLYEGL WL++N
Sbjct: 117 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score =  216 bits (549), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 101/175 (57%), Positives = 131/175 (74%), Gaps = 4/175 (2%)
Query: 2   GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
           GK++S++    F    +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN 
Sbjct: 1   GKVLSKI----FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 56
Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
            F VWDVGGQ+KIR LWRHY+  T GL FVVD +DR+RI EAR ELH+I++D E+ +A +
Sbjct: 57  KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           L+FANKQDLP+ M   E+ +KL L  +  R W +Q   A SG GLYEGL WL++N
Sbjct: 117 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score =  215 bits (547), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/176 (57%), Positives = 131/176 (74%), Gaps = 4/176 (2%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MGK++S++    F    +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN
Sbjct: 1   MGKVLSKI----FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN 56
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F VWDVGG +KIR LWRHY+  T GL FVVD +DR+RI EAR ELH+I++D E+ +A 
Sbjct: 57  VKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI 116
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           +L+FANKQDLP+ M   E+ +KL L  +  R W +Q   A SG GLYEGL WL++N
Sbjct: 117 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 172

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 98/163 (60%), Positives = 124/163 (76%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN  F VWDVGGQ+KIR L
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 382
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHY+  T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M   
Sbjct: 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 442
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           E+ +KL L  +  R W +Q   A SG GLYEGL WL++N   K
Sbjct: 443 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score =  213 bits (541), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 123/159 (77%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN  F VWDVGGQ+KIR L
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHY+  T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M   
Sbjct: 61  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           E+ +KL L  +  R W +Q   A SG GLYEGL WL++N
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score =  213 bits (541), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 123/159 (77%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN  F VWDVGGQ+KIR L
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHY+  T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M   
Sbjct: 61  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           E+ +KL L  +  R W +Q   A SG GLYEGL WL++N
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score =  209 bits (533), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 96/159 (60%), Positives = 122/159 (76%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN  F VWDVGG +KIR L
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPL 62
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHY+  T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M   
Sbjct: 63  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 122
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           E+ +KL L  +  R W +Q   A SG GLYEGL WL++N
Sbjct: 123 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 161

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score =  209 bits (533), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 96/159 (60%), Positives = 122/159 (76%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN  F VWDVGG +KIR L
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPL 63
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHY+  T GL FVVD +DR+RI EAR ELH+I++D E+ +A +L+FANKQDLP+ M   
Sbjct: 64  WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 123
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           E+ +KL L  +  R W +Q   A SG GLYEGL WL++N
Sbjct: 124 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 162

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score =  206 bits (523), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 119/158 (75%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           ++L +GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN  F VWDVGGQ+KIR LW
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           RHY+  T GL FVVD +DR+RI EAR ELH+I++D E  +A +L+FANKQDLP+     E
Sbjct: 62  RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           + +KL L  +  R W +Q   A SG GLYEGL WL++N
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 126/178 (70%), Gaps = 1/178 (0%)
Query: 1   MGKLISRLAKRFFPQCR-IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYK 59
           MG + S +  + +   + +++L++GLD +GKTTILY++++GE+VTT PTIGFNVE + YK
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 60  NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA 119
           N    VWD+GGQ  IR  WR Y+ DT  + FVVDS+D++R+S A  ELH +L + EL +A
Sbjct: 61  NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 120 ALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           ALLVFANKQD P  +  +EV+ +L L  L  R WSI + SAI G+G+ EGLDWL + I
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score =  172 bits (437), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 122/180 (67%), Gaps = 1/180 (0%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG L +R+  R F     K+++VGLD +GKTTILY+  + E+V T+PTIG NVE +   N
Sbjct: 1   MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F +WD+GGQ  +R+ W  Y+ +T  +  VVDS+DRERIS  R EL+++L+  +L  A 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LL+FANKQD+   M  AE++  L+L S+   +W IQ+C A++G+GL +GL+W+ + + ++
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score =  172 bits (437), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 122/180 (67%), Gaps = 1/180 (0%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG L +R+  R F     K+++VGLD +GKTTILY+  + E+V T+PTIG NVE +   N
Sbjct: 1   MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F +WD+GGQ  +R+ W  Y+ +T  +  VVDS+DRERIS  R EL+++L+  +L  A 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LL+FANKQD+   M  AE++  L+L S+   +W IQ+C A++G+GL +GL+W+ + + ++
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 112/160 (70%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++L++GLD +GKTTILY++++GE+VTT PTIGFNVE V YKN  F VWD+GGQ  IR  
Sbjct: 3   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPY 62
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WR Y+ +T  + +VVDS DR+RI  +++EL  +L + EL  A L+VFANKQD+   M  +
Sbjct: 63  WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPS 122
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           E+A+ L L +L  R+W I   SA  G GL E ++WL   +
Sbjct: 123 EMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 162

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score =  170 bits (430), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 122/180 (67%), Gaps = 1/180 (0%)
Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG + ++L   F  Q   K+++VGLD +GKTTILY+  + E+V T+PTIG NVE +  KN
Sbjct: 1   MGLIFAKLWSLFCNQ-EHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN 59
Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F +WD+GGQ  +R+ W  Y+ +T  +  VVDS DRER++  + EL+++L+  +L  AA
Sbjct: 60  THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA 119
Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           +L+FANKQD+   M  AE++  L L S+    W IQSC A++G+GL +GL+W+++ I V+
Sbjct: 120 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR 179

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score =  169 bits (428), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 79/160 (49%), Positives = 112/160 (70%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++L++GLD +GKTTILY++++GE+VTT PTIGFNVE V YKN  F VWD+GG   IR  
Sbjct: 5   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 64
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WR Y+ +T  + +VVDS DR+RI  +++EL  +L + EL  A L+VFANKQD+   M ++
Sbjct: 65  WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS 124
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           E+A+ L L +L  R+W I   SA  G GL E ++WL   +
Sbjct: 125 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 164

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/177 (44%), Positives = 119/177 (67%)
Query: 4   LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSF 63
           L++ L K    +  ++LLM+GLD +GKTTIL K    +I T +PT+GFN++ +E++    
Sbjct: 3   LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKL 62
Query: 64  CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV 123
            +WDVGGQ  +R+ WR+YF  T GL +VVDS+DR+R+ + + EL  +L +  L+ A LL+
Sbjct: 63  NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 122
Query: 124 FANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           FANKQDLP  + +  + + LEL S+    W IQ CSA++G+ L  G+DWL ++IS +
Sbjct: 123 FANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score =  166 bits (421), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/177 (43%), Positives = 118/177 (66%)
Query: 4   LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSF 63
           L++ L K    +  ++LLM+GLD +GKTTIL K    ++ T +PT+GFN++ +E++    
Sbjct: 5   LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKL 64
Query: 64  CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV 123
            +WDVGGQ  +R+ WR+YF  T GL +VVDS+DR+R+ + + EL  +L +  L+ A LL+
Sbjct: 65  NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 124
Query: 124 FANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           FANKQDLP  +    + + LEL S+    W IQ CSA++G+ L  G+DWL ++IS +
Sbjct: 125 FANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score =  166 bits (420), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 77/177 (43%), Positives = 118/177 (66%)
Query: 4   LISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSF 63
           L++ L K    +  ++LLM+GLD +GKTTIL K    ++ T +PT+GFN++ +E++    
Sbjct: 5   LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKL 64
Query: 64  CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV 123
            +WDVGGQ  +R+ WR+YF  T GL +VVDS+DR+R+ + + EL  +L +  L+ A LL+
Sbjct: 65  NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLI 124
Query: 124 FANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           FANKQDLP  +    + + LEL S+    W IQ CSA++G+ L  G+DWL ++IS +
Sbjct: 125 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score =  166 bits (419), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 110/155 (70%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           K+++VGLD +GKTTILY+  + E+V T+PTIG NVE +   N  F +WD+GGQ  +R+ W
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSW 82
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
             Y+ +T  +  VVDS+DRERIS  R EL+++L+  +L  A LL+FANKQD+   M  AE
Sbjct: 83  NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 142
Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
           ++  L+L S+   +W IQ+C A++G+GL +GL+W+
Sbjct: 143 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score =  166 bits (419), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 110/155 (70%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           K+++VGLD +GKTTILY+  + E+V T+PTIG NVE +   N  F +WD+GGQ  +R+ W
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSW 83
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
             Y+ +T  +  VVDS+DRERIS  R EL+++L+  +L  A LL+FANKQD+   M  AE
Sbjct: 84  NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 143
Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
           ++  L+L S+   +W IQ+C A++G+GL +GL+W+
Sbjct: 144 ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 178

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 126/176 (71%), Gaps = 3/176 (1%)
Query: 1   MGKLISRLAKRF--FPQCR-IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVE 57
           MG  ++ L +     P  R I++LM+GLD +GKT+ILY++ LG++VTT PT+G N+E ++
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 58  YKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS 117
           YKN SF VWD+GGQ  +R  WR YF DT  + +VVDS+DR+R+  A++EL+ +L ++EL 
Sbjct: 63  YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 118 NAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
            + LL+FANKQDLP+    AE+A++L + S+  R W+I   S+ +G GL EG+DWL
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 111/163 (68%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           ++LLM+GLD +GKTTIL K    ++ T +PT+GFN++ +E++     +WDVGG   +R+ 
Sbjct: 2   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WR+YF  T GL +VVDS+DR+R+ + + EL  +L +  L+ A LL+FANKQDLP  +   
Sbjct: 62  WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 121
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
            + + LEL S+    W IQ CSA++G+ L  G+DWL ++IS +
Sbjct: 122 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 164

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score =  153 bits (387), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 103/155 (66%)
Query: 26  DASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDT 85
           D +GKTTIL K    ++ T +PT+GFN++ +E++     +WDVGGQ  +R+ WR+YF  T
Sbjct: 27  DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 86  LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL 145
            GL +VVDS+DR+R  + + EL  +L +  L+ A LL+FANKQDLP  +    + + LEL
Sbjct: 87  DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 146 YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
            S+    W IQ CSA++G+ L  G+DWL ++IS +
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 115/167 (68%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73
           P   +++L++GLD +GKTT+L ++   +I   TPT GFN+++V+ +     VWD+GGQ K
Sbjct: 14  PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 73
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
           IR  WR YF +T  L +V+DS+DR+R  E   EL ++L + +LS   +L+FANKQDL   
Sbjct: 74  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 133
Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
            P +E+A+ L L+++  R W IQSCSA++G+G+ +G++W+  N++ K
Sbjct: 134 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 115/167 (68%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73
           P   +++L++GLD +GKTT+L ++   +I   TPT GFN+++V+ +     VWD+GGQ K
Sbjct: 13  PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRK 72
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
           IR  WR YF +T  L +V+DS+DR+R  E   EL ++L + +LS   +L+FANKQDL   
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132
Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
            P +E+A+ L L+++  R W IQSCSA++G+G+ +G++W+  N++ K
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 105/155 (67%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           ++L++GLD +GKTTILY++++GE+VTT PTIGFNVE V YKN  F VWD+GG   IR  W
Sbjct: 9   RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYW 68
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           R Y+ +T  + +VVDS DR+RI  +++EL   L + EL  A L+VFANKQD      ++E
Sbjct: 69  RCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSE 128
Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
            A+ L L +L  R+W I   SA  G GL E  +WL
Sbjct: 129 XANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWL 163

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score =  147 bits (370), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 112/160 (70%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++L++GLD +GKTT+L ++   +I   TPT GFN+++V+ +     VWD+GGQ KIR  
Sbjct: 5   VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPY 64
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WR YF +T  L +V+DS+DR+R  E   EL ++L + +LS   +L+FANKQDL    P +
Sbjct: 65  WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS 124
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           E+A+ L L+++  R W IQSCSA++G+G+ +G++W+  N+
Sbjct: 125 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 111/160 (69%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++L++GLD +GKTT+L ++   +I   TPT GFN+++V+ +     VWD+GG  KIR  
Sbjct: 5   VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPY 64
Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WR YF +T  L +V+DS+DR+R  E   EL ++L + +LS   +L+FANKQDL    P +
Sbjct: 65  WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS 124
Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           E+A+ L L+++  R W IQSCSA++G+G+ +G++W+  N+
Sbjct: 125 EIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT--PTIGFNVEAVEYKNKSFCVWDVGGQNKIR 75
           + +L +GLD SGKTTI+ K+K     +    PTIGF++E  +  + SF V+D+ GQ + R
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81
Query: 76  ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDLPNV 133
            LW HY+++   + FV+DSSDR R+  A+ EL  +L+  ++ +    +L FANK DL + 
Sbjct: 82  NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141
Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           + + +V+  L L ++  + W I +  AI G+GL EG+DWL + I
Sbjct: 142 VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA 76
           ++L +VGL  SGKTT +  +  G+      PT+GFN+  V   N +  +WD+GGQ + R+
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRS 82
Query: 77  LWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT 136
           +W  Y R    + +++D++DRE+I  +RNELH +L   +L    +LV  NK+DLPN +  
Sbjct: 83  MWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDE 142
Query: 137 AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
            ++ +K+ L ++  R     S S      +   L WL
Sbjct: 143 KQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 86/166 (51%), Gaps = 7/166 (4%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           KLL +GLD +GKTT+L+ +K   + T  PT     E +   N  F  +D+GG  + R LW
Sbjct: 25  KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 84
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           + YF +  G+ F+VD++D ER  EAR EL  + +  EL +   ++  NK D PN +  AE
Sbjct: 85  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 144
Query: 139 VADKLELYSL-------GQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           +   L L +        GQR   +  CS +   G  E   WLS  I
Sbjct: 145 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           KLL +GLD +GKTT+L+ +K   + T  PT     E +   N  F  +D+GG  + R LW
Sbjct: 3   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           + YF +  G+ F+VD++D ER  EAR EL  + +  EL +   ++  NK D PN +  AE
Sbjct: 63  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 139 VADKLELYSL-------GQRRWSIQSCSAISGQGLYEGLDWLS 174
           +   L L +        GQR   +  CS +   G  E   WLS
Sbjct: 123 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Query: 10  KRFFPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDV 68
           K  F +  ++L +VGL  SGKTT +  +  G+      PT+GFN+  +   N +  +WD+
Sbjct: 24  KALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDI 83
Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
           GGQ + R++W  Y R    + ++VD++D+E+I  ++NELH +L   +L    +LV  NK+
Sbjct: 84  GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKR 143
Query: 129 DLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
           DLP  +   E+ +K+ L ++  R     S S      +   L WL
Sbjct: 144 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA 76
           ++L +VGL  SGKTT +  +  G+      PT+GFN+  +   N +  +WD+GGQ + R+
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 82
Query: 77  LWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT 136
           +W  Y R    + ++VD++D+E+I  ++NELH +L   +L    +LV  NK+DLP  +  
Sbjct: 83  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE 142
Query: 137 AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
            E+ +K+ L ++  R     S S      +   L WL
Sbjct: 143 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 94/174 (54%), Gaps = 10/174 (5%)
Query: 15  QCRIKLLMVGLDASGKTTILYKMKLGEIVTT--TPTIGFNVEAVEYKNKSFCVWDVGGQN 72
           + +++++M GLD SGKTTI+ ++K  +  +   T T+G+NVE  E    +F V+D+GG  
Sbjct: 15  KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAK 74
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL-------SNAALLVFA 125
           K R LW  Y+ +   + FVVDSSD  R+   ++E+  +L   ++            L FA
Sbjct: 75  KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFA 134
Query: 126 NKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
           NK D       AE+ + L+L +L G   + I + + + G G++EG  WL    S
Sbjct: 135 NKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           KL+ +GLD +GKTT+L+ +K   +    PT+    E +     +F  +D+GG  + R +W
Sbjct: 24  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVW 83
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           ++Y     G+ F+VD +D ER+ E++ EL  +++D  ++N  +L+  NK D P  +    
Sbjct: 84  KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 143
Query: 139 VADKLELYS------------LGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           + +   LY             L  R   +  CS +  QG  EG  W++  I
Sbjct: 144 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 194

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           KL+ +GLD +GKTT+L+ +K   +    PT+    E +     +F  +D+GG  + R +W
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVW 86
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           ++Y     G+ F+VD +D ER+ E++ EL  +++D  ++N  +L+  NK D P  +    
Sbjct: 87  KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 146
Query: 139 VADKLELYS------------LGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           + +   LY             L  R   +  CS +  QG  EG  W++  I
Sbjct: 147 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           KL+ +GLD +GKTT+L+ +K   +    PT+    E +     +F  +D+GG  + R +W
Sbjct: 18  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVW 77
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           ++Y     G+ F+VD +D ER+ E++ EL  +++D  ++N  +L+  NK D P  +    
Sbjct: 78  KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEER 137
Query: 139 VADKLELYS------------LGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           + +   LY             L  R   +  CS +  QG  EG  W++  I
Sbjct: 138 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 188

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 12/171 (7%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           KL+ +GLD +GKTT+L+ +K   +    PT+    E +     +F  +D+GG  + R +W
Sbjct: 37  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVW 96
Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           ++Y     G+ F+VD +D  R+ E++ EL+ +++D  +SN  +L+  NK D  + +   +
Sbjct: 97  KNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEK 156
Query: 139 VADKLELYS------------LGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           + +   LY             L  R   +  CS +  QG  EG  WLS  I
Sbjct: 157 LREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 207

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYK--------NKSFCV- 65
           IKLL +G    GKTT LY+    K      TT  I F  + V Y          K+F V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 66  ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
              WD  GQ + R+L   +FRD +G   + D + ++     RN + Q+ ++    N  ++
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 123 VFANKQDLP-----NVMPTAEVADK 142
           +  NK DLP     N     E+ADK
Sbjct: 146 LIGNKADLPDQREVNERQARELADK 170

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKN--------KSFCV- 65
           IKLL +G    GKTT LY+    K      TT  I F  + V Y          K+F V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66  ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
              WD  G  + R+L   +FRD +G   + D + ++     RN + Q+ ++    N  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDLPN 132
           +  NK DLP+
Sbjct: 132 LIGNKADLPD 141

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEY--------KNKSFCV- 65
           IKLL +G    GKTT LY+    K      TT  I F  + V Y          K+F V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66  ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
              WD  G  + R+L   +FRD +G   + D + ++     RN + Q+ ++    N  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 123 VFANKQDLPN 132
           +  NK DLP+
Sbjct: 132 LIGNKADLPD 141

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKN--------KSFCV- 65
           IKLL +G    GKTT LY+    K      TT  I F  + V Y          K+F V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66  ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
              WD  G  + R+L   +FRD  G     D + ++     RN   Q+ ++    N  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDLPN 132
           +  NK DLP+
Sbjct: 132 LIGNKADLPD 141

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKN--------KSFCV- 65
           IKLL +G    GKTT LY+    K      TT  I F  + V Y          K+F V 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66  ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
              WD  G  + R+L   +FRD  G     D + ++     RN   Q+ ++    N  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 123 VFANKQDLPN 132
           +  NK DLP+
Sbjct: 132 LIGNKADLPD 141

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
           +K+L++G    GK+ +L +    K      TT  I F ++ V+   K     +WD  GQ 
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDL 130
           + R +   Y+R  +G+  V D +D    +  +     +   NE +N  A LL+  NK D+
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDM 120
Query: 131 PNVMPTAEVADKL 143
              + TA+  + L
Sbjct: 121 ETRVVTADQGEAL 133

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
           +K+L++G    GK+ +L +    K      TT  I F ++ V+   K     +WD  GQ 
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDL 130
           + R +   Y+R  +G+  V D +D    +  +     +   NE +N  A LL+  NK D+
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDM 137
Query: 131 PNVMPTAEVADKL 143
              + TA+  + L
Sbjct: 138 ETRVVTADQGEAL 150

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
           +K+L++G    GK+ +L +    K      TT  I F ++ V+   K     +WD  GQ 
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDL 130
           + R +   Y+R  +G+  V D +D    +  +     +   NE +N  A LL+  NK D+
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDM 124
Query: 131 PNVMPTAEVADKL 143
              + TA+  + L
Sbjct: 125 ETRVVTADQGEAL 137

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSFC---VWDVGGQN 72
           K++++G    GK+ +L +    E  + +  TIG  F  ++++ KN       +WD  GQ 
Sbjct: 9   KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + RA+   Y+R  +G   V D + +         L + L DN  SN  +L+  NK DL +
Sbjct: 69  RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE-LRDNADSNIVILLVGNKSDLKH 127
Query: 133 V 133
           +
Sbjct: 128 L 128

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 19  KLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQNK 73
           KLL++G    GKT +L++           +T  I F +  +E   K     +WD  GQ +
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            R +   Y+R  +G+  V D ++ +     RN +  I  ++  ++   ++  NK D+ + 
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI-EEHASADVEKMILGNKCDVNDK 126
Query: 134 MPTA-EVADKLEL 145
              + E  +KL L
Sbjct: 127 RQVSKERGEKLAL 139

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 18  IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            KLL++G    GKT +L++           +T  I F +  +E   K     +WD  GQ 
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R +   Y+R  +G+  V D ++ +     RN +  I  ++  ++   ++  NK D+ +
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI-EEHASADVEKMILGNKCDVND 127
Query: 133 VMPTA-EVADKLEL 145
               + E  +KL L
Sbjct: 128 KRQVSKERGEKLAL 141

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            KLL++G  + GKT+ L++           +T  I F V+ V   +K     +WD  GQ 
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R +   Y+R  +G   + D +++E  +  ++   QI +     NA +++  NK DL +
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT-YSWDNAQVILVGNKCDLED 141
Query: 133 --VMPTAE---VADKL 143
             V+P  +   +AD L
Sbjct: 142 ERVVPAEDGRRLADDL 157

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNK--SFCVWDVGGQN 72
           +K+ ++G    GK++I+++           PTIG  F  + V+Y+N+   F +WD  GQ 
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + RAL   Y+R +     V D +  E  S  +N + + L  +   +  + +  NK DL +
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-LRQHGPPSIVVAIAGNKCDLTD 124
Query: 133 VMPTAE 138
           V    E
Sbjct: 125 VREVME 130

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 19  KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
           K+L++G    GK+ +L +    K      TT  I F ++ V+   K     +WD  GQ +
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDLP 131
            R +   Y+R   G+  V D +D    +  +     +   NE +N  A LL+  NK D  
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDXE 121
Query: 132 NVMPTAEVADKL 143
             + TA+  + L
Sbjct: 122 TRVVTADQGEAL 133

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEI---VTTTPTIGFNVEAVEYKNKS------------ 62
           IK L +G    GKT++LY+   G+      TT  I F  + V Y+               
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 63  FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
             +WD  G  + R+L   +FRD +G   + D ++ +     RN + Q+       N  ++
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 123 VFANKQDLPNVMPTAE 138
           +  NK DL +     E
Sbjct: 132 LCGNKSDLEDQRAVKE 147

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 19  KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
           K+L++G    GK+ +L +    K      TT  I F ++ V+   K     +WD  GQ +
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN--AALLVFANKQDLP 131
            R +   Y+R   G+  V D +D    +  +     +   NE +N  A LL+  NK D  
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTV---NEHANDEAQLLLVGNKSDXE 121
Query: 132 NVMPTAEVADKL 143
             + TA+  + L
Sbjct: 122 TRVVTADQGEAL 133

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 18  IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            KLL++G  + GKT+ L++           +T  I F V+ V    K     +WD  GQ 
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R +   Y+R  +G   + D ++ E  +  ++   QI +     NA +++  NK D+  
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEE 142
Query: 133 --VMPT 136
             V+PT
Sbjct: 143 ERVVPT 148

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 19  KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
           KLL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ +
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDL 130
            R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL
Sbjct: 71  FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDL 126

>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 42  IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS------ 95
           ++   PT G +    E KN  F + DVGGQ   R  W   F     + F+V SS      
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 96  --DRE--RISEARNELHQILSDNELSNAALLVFANKQDL 130
             DR+  R++E+ N    I+++   SN ++++F NK DL
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256

>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 42  IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS------ 95
           ++   PT G +    E KN  F + DVGGQ   R  W   F     + F+V SS      
Sbjct: 182 LLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241
Query: 96  --DRE--RISEARNELHQILSDNELSNAALLVFANKQDL 130
             DR+  R++E+ N    I+++   SN ++++F NK DL
Sbjct: 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ 
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDL 130
           + R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDL 126

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 18  IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ 
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
           + R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL 
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 143
Query: 132 -----NVMPTAEVADKL 143
                +     E AD L
Sbjct: 144 TKKVVDYTTAKEFADSL 160

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ 
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
           + R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL 
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 151
Query: 132 -----NVMPTAEVADKL 143
                +     E AD L
Sbjct: 152 TKKVVDYTTAKEFADSL 168

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 19  KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
           KLL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ +
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP- 131
            R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL  
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 118
Query: 132 ----NVMPTAEVADKL 143
               +     E AD L
Sbjct: 119 KKVVDYTTAKEFADSL 134

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 19  KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
           KLL++G    GK+ +L +       +   +T  + F +  +  +NK+    +WD  GQ +
Sbjct: 11  KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
            R +   Y+R   G+  V D +DR+     +  + +I     + N   L+  NK DL
Sbjct: 71  FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI-DRYAMENVNKLLVGNKCDL 126

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 18  IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ 
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDL 130
           + R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL 133

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ 
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
           + R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL 
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 124
Query: 132 -----NVMPTAEVADKL 143
                +     E AD L
Sbjct: 125 TKKVVDYTTAKEFADSL 141

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 19  KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
           KLL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ +
Sbjct: 8   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP- 131
            R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL  
Sbjct: 68  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTT 125
Query: 132 ----NVMPTAEVADKL 143
               +     E AD L
Sbjct: 126 KKVVDYTTAKEFADSL 141

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNK--SFCVWDVGGQN 72
           +K+ ++G    GK++I+++           PTIG  F  + V+Y+N+   F +WD  G  
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + RAL   Y+R +     V D +  E  S  +N + + L  +   +  + +  NK DL +
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-LRQHGPPSIVVAIAGNKCDLTD 125
Query: 133 VMPTAE 138
           V    E
Sbjct: 126 VREVME 131

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
            K++++G    GK+ +L +    E  + +  TIG  F    +E +NK     +WD  G  
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + RA+   Y+R  +G   V D S         + L + L +N   N A+ +  NK DL +
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTE-LRENADDNVAVGLIGNKSDLAH 129
Query: 133 V--MPTAE 138
           +  +PT E
Sbjct: 130 LRAVPTDE 137

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 19  KLLMVGLDASGKTTILYKMK----LGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
           KLL++G    GK+++L +       G  +TT   + F +  VE   +     +WD  GQ 
Sbjct: 11  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG-VDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
           + R +   Y+R T G+  V D +  E     +  LH+I  +    +   ++  NK D P
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDP 126

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK  +L +       E   +T  + F +  +E   K+    +WD  GQ 
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
           + R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL 
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 134
Query: 132 -----NVMPTAEVADKL 143
                +     E AD L
Sbjct: 135 TKKVVDYTTAKEFADSL 151

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS---FCVWDVGGQ 71
            K+L++G  + GKT+ L++           +T  I F V+ + Y+N       +WD  GQ
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGQ 64
Query: 72  NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
            + R +   Y+R  +G   + D ++ E  +  ++   QI +     NA +L+  NK D+ 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDME 123
Query: 132 N 132
           +
Sbjct: 124 D 124

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK+ +L +           +T  + F ++ VE   K+    +WD  GQ 
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQDLP 131
           + R +   Y+R + G+  V D +D+E  +  +  L +I  D   ++  L L+  NK DL 
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 139
Query: 132 N 132
           +
Sbjct: 140 D 140

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK+ +L +           +T  + F ++ VE   K+    +WD  GQ 
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQDLP 131
           + R +   Y+R + G+  V D +D+E  +  +  L +I  D   ++  L L+  NK DL 
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 126
Query: 132 N 132
           +
Sbjct: 127 D 127

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            KLL++G    GK+ +L +           +T  + F ++ VE   K+    +WD  GQ 
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQDLP 131
           + R +   Y+R + G+  V D +D+E  +  +  L +I  D   ++  L L+  NK DL 
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLK 126
Query: 132 N 132
           +
Sbjct: 127 D 127

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G  A GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 6   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 65
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ E  + A+N + + L      N  + +  NK DL
Sbjct: 66  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 124
Query: 131 PN 132
            N
Sbjct: 125 AN 126

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G  A GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ E  + A+N + + L      N  + +  NK DL
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
            N
Sbjct: 124 AN 125

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G  A GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 6   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 65
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ E  + A+N + + L      N  + +  NK DL
Sbjct: 66  QERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 124
Query: 131 PN 132
            N
Sbjct: 125 AN 126

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
            K++++G    GK+ +L +    E  + +  TIG  F    +E + K     +WD  GQ 
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + RA+   Y+R  +G   V D S         + L + L +N   N A+ +  NK DL +
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSE-LRENADDNVAVGLIGNKSDLAH 132
Query: 133 V--MPTAE 138
           +  +PT E
Sbjct: 133 LRAVPTEE 140

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 20  LLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNKI 74
           LL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ + 
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75  RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQDLP 131
           R +   Y+R   G+  V D +D+E  +  +  L +I  D   S N   L+  NK DL 
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLT 116

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 19  KLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQNK 73
           KLL++G    GK+ +L +       E   +T  + F +  +E   K+    +WD  GQ +
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQI 110
            R +   Y+R   G+  V D +D+E  +  +  L +I
Sbjct: 70  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 23/131 (17%)
Query: 13  FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTT--PTIGFNVEAVEYKNKSFCV----- 65
           F     K+++VG    GKT +L + K G  +  T   T+G     ++++NK   V     
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG-----IDFRNKVLDVDGVKV 60
Query: 66  ----WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSN 118
               WD  GQ + R++   Y+RD   L  + D +++   + I     E+H+        +
Sbjct: 61  KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HD 116
Query: 119 AALLVFANKQD 129
            AL++  NK D
Sbjct: 117 VALMLLGNKVD 127

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
           K++++G    GK+ +L +    E  + +  TIG  F   +++   K+    +WD  GQ +
Sbjct: 22  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            RA+   Y+R  +G   V D +           L + L D+  SN  +++  NK DL ++
Sbjct: 82  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHL 140
Query: 134 --MPTAE 138
             +PT E
Sbjct: 141 RAVPTDE 147

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T  PT G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 176 TRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
            K++++G    GK+ +L +    E  + +  TIG  F   +++   K+    +WD  GQ 
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + RA+   Y+R  +G   V D +           L + L D+  SN  +++  NK DL +
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRH 148
Query: 133 V--MPTAE 138
           +  +PT E
Sbjct: 149 LRAVPTDE 156

>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 42  IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS------ 95
           ++   PT G +    E KN  F + DVGG    R  W   F     + F+V SS      
Sbjct: 158 LLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVL 217
Query: 96  --DRE--RISEARNELHQILSDNELSNAALLVFANKQDL 130
             DR+  R++E+ N    I+++   SN ++++F NK DL
Sbjct: 218 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Query: 18  IKLLMVGLDASGKTTILY-----KMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN 72
            K L++G   +GK+ +L+     K K     T     G  V  V  K     +WD  GQ 
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLVFANKQD 129
           + R++ R Y+R   G   V D + R    E  N L   L+D       N  +++  NK+D
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSR----ETYNSLAAWLTDARTLASPNIVVILCGNKKD 141
Query: 130 LPNVMPTAEVADKLELYSLGQR-RWSIQSCSAISGQGLYEGL 170
           L    P  EV   LE     Q         SA++G+ + E  
Sbjct: 142 LD---PEREVT-FLEASRFAQENELMFLETSALTGENVEEAF 179

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G    GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 5   CQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ E  + A+N + + L      N  + +  NK DL
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
            N
Sbjct: 124 AN 125

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 2   GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEY 58
           G L+ R ++ +      K++++G    GKT+++ +    K  +   TT    F  + +  
Sbjct: 9   GSLVPRGSRAY----SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI 64
Query: 59  KNK--SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSD 113
             K  +  +WD  GQ +  AL   Y+RD+ G   V D +D +   + +N   EL ++L  
Sbjct: 65  GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG- 123
Query: 114 NELSNAALLVFANKQDL 130
           NE+    L +  NK DL
Sbjct: 124 NEI---CLCIVGNKIDL 137

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 9   AKRFFPQCRIKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEA--VEYKNKSF 63
           AK F  Q   K+++ G  A GK++ L ++   +  E ++ T  + F ++   V+ +    
Sbjct: 20  AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVL 79
Query: 64  CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLV 123
            +WD  GQ + R++ + YFR   G+  + D +  +     R E   ++ D       +++
Sbjct: 80  QLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIML 138
Query: 124 FANKQDLPNVMPT 136
             NK D+ +   T
Sbjct: 139 VGNKADIRDTAAT 151

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +KN  F ++DVGGQ   R  W H F D   + F V  S  +++   
Sbjct: 157 TRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHE 216
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++    + ++++F NK+DL
Sbjct: 217 DETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDL 253

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G    GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 5   CQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ E  + A+N + + L      N  + +  NK DL
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
            N
Sbjct: 124 AN 125

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G    GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 5   CQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ E  + A+N + + L      N  + +  NK DL
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
            N
Sbjct: 124 AN 125

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G    GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 5   CQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ E  + A+N + + L      N  + +  NK DL
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
            N
Sbjct: 124 AN 125

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G    GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 5   CQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ E  + A+N + + L      N  + +  NK DL
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 123
Query: 131 PN 132
            N
Sbjct: 124 AN 125

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            K L++G   +GK+ +L++    K  +    T  + F  + +    K     +WD  GQ 
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLVFANKQD 129
           + R++ R Y+R   G   V D + R    E  N L   L+D  +    N  +++  NK+D
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 126
Query: 130 L 130
           L
Sbjct: 127 L 127

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 18  IKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            KL++VG  + GKT ++ + K G   E   +T  + F ++ +E + K     +WD  GQ 
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R + + Y+R   G     D + R       + +  +      SN   L+  NK DL  
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV-RKYAGSNIVQLLIGNKSDLSE 148
Query: 133 V--MPTAEVADKLELYSL 148
           +  +  AE     E Y +
Sbjct: 149 LREVSLAEAQSLAEHYDI 166

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            K L++G   +GK+ +L++    K  +    T  + F  + +    K     +WD  GQ 
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLVFANKQD 129
           + R++ R Y+R   G   V D + R    E  N L   L+D  +    N  +++  NK+D
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 130 L 130
           L
Sbjct: 128 L 128

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G  A GK++++ +   G   E   +T    F  ++V   + +  F +WD  G
Sbjct: 7   CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAG 66
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA-NKQD 129
           Q +  +L   Y+R       V D +++E  + A+  + ++    + S + ++  A NK D
Sbjct: 67  QERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKEL--QRQASPSIVIALAGNKAD 124
Query: 130 LPN 132
           L N
Sbjct: 125 LAN 127

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
           PQ + KL++VG   +GKTT + +   GE      PT+G  V  + +        F VWD 
Sbjct: 7   PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ K   L   Y+        + D + R       N    ++   E  N  +++  NK 
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
           D+
Sbjct: 125 DI 126

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            K++++G    GKT+++ +    K  +   TT    F  + +    K  +  +WD  GQ 
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFANKQD 129
           +  AL   Y+RD+ G   V D +D +   + +N   EL ++L  NE+    L +  NK D
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEI---CLCIVGNKID 122
Query: 130 LP 131
           L 
Sbjct: 123 LE 124

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTP-TIG--FNVEAVEYKNKS--FCVWDVGGQN 72
            K +++G    GK+ +L++    + +   P TIG  F    +E   +     +WD  GQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNE---LSNAALLVFANKQD 129
           + RA+ R Y+R   G   V D + R       N L   L+D       N  +++  NK D
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 130 L 130
           L
Sbjct: 147 L 147

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            K++++G    GKT+++ +    K  +   TT    F  + +    K  +  +WD  GQ 
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFANKQD 129
           +  AL   Y+RD+ G   V D +D +   + +N   EL ++L  NE+    L +  NK D
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEI---CLCIVGNKID 122
Query: 130 LP 131
           L 
Sbjct: 123 LE 124

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G  A GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 4   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
             +  +L   Y+R       V D ++ E  + A+N + + L      N  + +  NK DL
Sbjct: 64  LERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE-LQRQASPNIVIALSGNKADL 122
Query: 131 PN 132
            N
Sbjct: 123 AN 124

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
           PQ + KL++VG   +GKTT + +   GE      PT+G  V  + +        F VWD 
Sbjct: 7   PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ K   L   Y+        + D + R       N    ++   E  N  +++  NK 
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
           D+
Sbjct: 125 DI 126

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 17  RIKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQ 71
           +++++++G    GKT+++ +       E   +T  + F ++ VE + K     +WD  GQ
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 72  NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFANKQD 129
            +  ++   Y+R   G+  V D + +E   +    +  I  D   S +A LL+  NK D
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLD 142

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTP-TIG--FNVEAVEYKNKS--FCVWDVGGQN 72
            K +++G    GK+ +L++    + +   P TIG  F    +E   +     +WD  GQ 
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNE---LSNAALLVFANKQD 129
           + RA+ R Y+R   G   V D + R       N L   L+D       N  +++  NK D
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 130 L 130
           L
Sbjct: 132 L 132

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
           K++++G    GK+ +L +    E  + +  TIG  F   +++   K+    +WD  GQ +
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            R +   Y+R  +G   V D +           L + L D+  SN  +++  NK DL ++
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHL 125
Query: 134 --MPTAE 138
             +PT E
Sbjct: 126 RAVPTDE 132

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G  A GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 4   CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ +  + A+N + + L      N  + +  NK DL
Sbjct: 64  QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE-LQRQASPNIVIALAGNKADL 122
Query: 131 PN 132
            +
Sbjct: 123 AS 124

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
           K++++G    GK+ +L +    E  + +  TIG  F   +++   K+    +WD  G  +
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            RA+   Y+R  +G   V D +           L + L D+  SN  +++  NK DL ++
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHL 149
Query: 134 --MPTAE 138
             +PT E
Sbjct: 150 RAVPTDE 156

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
           K++++G    GK+ +L +    E  + +  TIG  F   +++   K+    +WD  G  +
Sbjct: 10  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            RA+   Y+R  +G   V D +           L + L D+  SN  +++  NK DL ++
Sbjct: 70  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHL 128
Query: 134 --MPTAE 138
             +PT E
Sbjct: 129 RAVPTDE 135

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 145 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 204
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 205 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 152 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 211
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 212 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 153 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 150 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 209
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 210 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 179 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 239 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 147 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 206
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 207 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 18  IKLLMVGLDASGKTTILYKMK---LGEIVTTTPTIGFNVE--AVEYKNKSFCVWDVGGQN 72
           +K+L++G    GK+++L +         +  T  + F V+  +V+       +WD  GQ 
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRE---RISEARNELHQILSDNELSNAALLVFANKQD 129
           + R L   Y+R   G+  V D + R+   ++    NEL    + N++ N    +  NK D
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNX---LVGNKID 132
Query: 130 LPN 132
             N
Sbjct: 133 KEN 135

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 48  TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI---SEAR 104
           T G       +K+ +F ++DVGGQ   R  W H F     + F V  SD + +    E  
Sbjct: 152 TTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 211
Query: 105 NELHQ-------ILSDNELSNAALLVFANKQDL 130
           N +H+       I ++   ++ ++++F NK+DL
Sbjct: 212 NRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 16  CRIKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNKS--FCVWDVGG 70
           C+ KL+++G  A GK++++ +   G   E   +T    F  + V   + +  F +WD  G
Sbjct: 2   CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 61
Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R       V D ++ +  + A+N + + L      N  + +  NK DL
Sbjct: 62  QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE-LQRQASPNIVIALAGNKADL 120
Query: 131 PN 132
            +
Sbjct: 121 AS 122

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS--FCVWDVGGQN 72
            K +++G    GK+ +L +    +   +   T  + F    V    K     +WD  GQ 
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSD---NELSNAALLVFANKQD 129
             R++ R Y+R   G   V D + RE      N L   L D   +  SN  +++  NK D
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETF----NHLTSWLEDARQHSSSNMVIMLIGNKSD 137
Query: 130 LPN 132
           L +
Sbjct: 138 LES 140

>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
           +F ++DVGGQ   R  W   F D   + FVV SS      RE     R+ EA N    I 
Sbjct: 204 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 263
Query: 112 SDNELSNAALLVFANKQDL 130
           ++  L   ++++F NKQDL
Sbjct: 264 NNRWLRTISVILFLNKQDL 282

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 48  TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI---SEAR 104
           T G       +K+ +F ++DVGGQ   R  W H F     + F V  SD + +    E  
Sbjct: 183 TTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 242
Query: 105 NELHQ-------ILSDNELSNAALLVFANKQDL 130
           N +H+       I ++   ++ ++++F NK+DL
Sbjct: 243 NRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275

>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
           +F ++DVGGQ   R  W   F D   + FVV SS      RE     R+ EA N    I 
Sbjct: 204 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 263
Query: 112 SDNELSNAALLVFANKQDL 130
           ++  L   ++++F NKQDL
Sbjct: 264 NNRWLRTISVILFLNKQDL 282

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 42  IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI- 100
           ++   PT G +     +K+  F ++DVGGQ   R  W   F     + F V  SD +++ 
Sbjct: 161 LLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVL 220
Query: 101 --SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
                 N +H+       I ++   ++ ++++F NK+DL
Sbjct: 221 MEDRQTNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259

>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
           +F ++DVGGQ   R  W   F D   + FVV SS      RE     R+ EA N    I 
Sbjct: 218 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277
Query: 112 SDNELSNAALLVFANKQDL 130
           ++  L   ++++F NKQDL
Sbjct: 278 NNRWLRTISVILFLNKQDL 296

>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
           +F ++DVGGQ   R  W   F D   + FVV SS      RE     R+ EA N    I 
Sbjct: 218 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277
Query: 112 SDNELSNAALLVFANKQDL 130
           ++  L   ++++F NKQDL
Sbjct: 278 NNRWLRTISVILFLNKQDL 296

>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD-----RE-----RISEARNELHQIL 111
           +F ++DVGGQ   R  W   F D   + FVV SS      RE     R+ EA N    I 
Sbjct: 218 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277
Query: 112 SDNELSNAALLVFANKQDL 130
           ++  L   ++++F NKQDL
Sbjct: 278 NNRWLRTISVILFLNKQDL 296

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 146 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   +  ++++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 242

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   +  ++++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   +  ++++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 249

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 19  KLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQNK 73
           K++++G    GK+ +L +    E  + +  TIG  F   +++   K+    +WD  G  +
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            RA+   Y+R  +G   V D +           L + L D+  SN  + +  NK DL ++
Sbjct: 67  YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXLVGNKSDLRHL 125
Query: 134 --MPTAE 138
             +PT E
Sbjct: 126 RAVPTDE 132

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 10/161 (6%)
Query: 17  RIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNK--SFCVWDVGGQ 71
            +K+ ++G    GK++I+ +          +PTIG  F  + V   N+   F +WD  GQ
Sbjct: 23  ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82
Query: 72  NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
            +  +L   Y+R +     V D + ++     +  + + L ++   N  + +  NK DL 
Sbjct: 83  ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIAGNKCDLS 141
Query: 132 NV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL 170
           ++  +P  +  +  E  S+G       + +AI+ + L++G+
Sbjct: 142 DIREVPLKDAKEYAE--SIGAIVVETSAKNAINIEELFQGI 180

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
            K++++G    GK+ +L +    E  + +  TIG  F   +++   K+    +WD  G  
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + RA+   Y+R  +G   V D +           L + L D+  SN  + +  NK DL +
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXLVGNKSDLRH 130
Query: 133 V--MPTAE 138
           +  +PT E
Sbjct: 131 LRAVPTDE 138

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD + +   
Sbjct: 176 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   +  ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDL 272

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            K L++G   +GK+ +L++    K  +    T  + F  + +    K     +WD  G  
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLVFANKQD 129
           + R++ R Y+R   G   V D + R    E  N L   L+D  +    N  +++  NK+D
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSR----ETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 130 LP 131
           L 
Sbjct: 125 LD 126

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46  TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSS 95
            PT G      + ++  F + DVGGQ   R  W H F +   + F          +V+S 
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 96  DRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           +  R+ E++     I++     N+++++F NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 47  PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSSD 96
           PT G      + ++  F + DVGGQ   R  W H F +   + F          +V+S +
Sbjct: 181 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 240
Query: 97  RERISEARNELHQILSDNELSNAALLVFANKQDL 130
             R+ E++     I++     N+++++F NK+DL
Sbjct: 241 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 47  PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSSD 96
           PT G      + ++  F + DVGGQ   R  W H F +   + F          +V+S +
Sbjct: 179 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 238
Query: 97  RERISEARNELHQILSDNELSNAALLVFANKQDL 130
             R+ E++     I++     N+++++F NK+DL
Sbjct: 239 ENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46  TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSS 95
            PT G      + ++  F + DVGGQ   R  W H F +   + F          +V+S 
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 231
Query: 96  DRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           +  R+ E++     I++     N+++++F NK+DL
Sbjct: 232 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 18  IKLLMVGLDASGKTTILYKM---KLGEIVTTTPTIGFNVEAVEYKNKS---FCVWDVGGQ 71
            K+L++G  + GKT+ L++           +T  I F V+ + Y+N       +WD  G 
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGL 67
Query: 72  NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
            + R +   Y+R   G     D ++ E  +  ++   QI +     NA +L+  NK D
Sbjct: 68  ERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCD 124

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 46  TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF----------VVDSS 95
            PT G      + ++  F + DVGGQ   R  W H F +   + F          +V+S 
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 96  DRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           +  R+ E++     I++     N+++++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKS--FCVWDVGGQN 72
           IKL+++G  A GK++I+ +    +      PTIG  F  + V     +  F +WD  GQ 
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDN 114
           +  +L   Y+R+      V D +  +   +AR+   ELH+  S +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD 108

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
           PQ + KL++VG   +GKTT + +   GE       T+G  V  + +        F VWD 
Sbjct: 7   PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ K   L   Y+        + D + R       N    ++   E  N  +++  NK 
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
           D+
Sbjct: 125 DI 126

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DV GQ   R  W H F     + F V  SD + +   
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DVG Q   R  W H F     + F V  SD + +   
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor Length = 214

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 20  LLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN---KSFCVWDVGGQNKIRA 76
           +L VGL  SGKT +  ++  G+   T  +I  +    +  N    S  + D+ G   +R 
Sbjct: 10  VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 69
Query: 77  LWRHYFRDTL-GLTFVVDSSDRER-ISEARNELHQILSDN-ELSNA-ALLVFANKQDLPN 132
                F+ +   + FVVDS+  +R + +    L+Q+L D+  L N+ +LL+  NKQD+  
Sbjct: 70  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129
Query: 133 VMPTAEVADKLE 144
                 +  +LE
Sbjct: 130 AKSAKLIQQQLE 141

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI--- 100
           T   T G       +K+  F ++DV GQ   R  W H F     + F V  SD + +   
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 101 SEARNELHQ-------ILSDNELSNAALLVFANKQDL 130
            E  N +H+       I ++   ++ ++++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDL 273

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
           PQ + KL++VG   +GKTT + +   GE       T+G  V  + +        F VWD 
Sbjct: 7   PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ K   L   Y+        + D + R       N    ++   E  N  +++  NK 
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
           D+
Sbjct: 125 DI 126

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
           PQ + KL++VG   +GKTT + +   GE       T+G  V  + +        F VWD 
Sbjct: 12  PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71
Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ K   L   Y+        + D + R       N    ++   E  N  +++  NK 
Sbjct: 72  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 129
Query: 129 DL 130
           D+
Sbjct: 130 DI 131

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
           PQ + KL++VG   +GKTT + +   GE       T+G  V  + +        F VWD 
Sbjct: 7   PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ K   L   Y+        + D + R       N    ++   E  N  +++  NK 
Sbjct: 67  AGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
           D+
Sbjct: 125 DI 126

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNK----SFCVWDV 68
           PQ + KL++VG   +GKTT + +   GE       T+G  V  + +        F VWD 
Sbjct: 7   PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 66
Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ K   L   Y+        + D + R       N    ++   E  N  +++  NK 
Sbjct: 67  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 124
Query: 129 DL 130
           D+
Sbjct: 125 DI 126

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 48  TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERI---SEAR 104
           T G       +K+ +F  +DVGGQ   R  W H F     + F V  SD + +    E  
Sbjct: 177 TTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEX 236
Query: 105 NELHQ-------ILSDNELSNAALLVFANKQDL 130
           N  H+       I ++   ++ ++++F NK+DL
Sbjct: 237 NRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA----VEYKNKSFCVWDV 68
           P  + KL+ +G  + GKT+++ +        T   TIG +  +    +E +     +WD 
Sbjct: 3   PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDT 62
Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ + R+L   Y RD+     V D ++     +    +  + ++   S+  +++  NK 
Sbjct: 63  AGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKT 121
Query: 129 DLPN 132
           DL +
Sbjct: 122 DLAD 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	181
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-105
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-105
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-105
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-104
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-104
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-103
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-103
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-103
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-102
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	1e-102
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-101
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	5e-98
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-97
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-94
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-70
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-64
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-60
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-59
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	1e-46
3llu_A	196	RAS-related GTP-binding protein C; structural geno	4e-40
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	6e-40
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	7e-32
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	6e-20
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	8e-10
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	9e-10
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	1e-09
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-09
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-09
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-09
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-09
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	9e-09
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	9e-09
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-08
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-08
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-08
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	2e-08
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-08
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-08
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-08
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-08
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	4e-08
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-08
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	4e-08
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	4e-08
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-08
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	6e-08
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	7e-08
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	7e-08
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	8e-08
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	8e-08
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	8e-08
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-07
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-07
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-07
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-07
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-07
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-07
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-07
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-07
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-07
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	4e-07
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-07
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-07
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	4e-07
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	8e-07
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	8e-07
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	8e-07
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-06
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-06
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-06
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	2e-06
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	3e-06
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	5e-06
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	6e-06
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-05
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-05
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-05
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-05
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	4e-05
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	5e-05
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	7e-05
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	7e-05
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	8e-05
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	1e-04
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-04
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-04
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-04
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-04
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-04
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-04
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-04
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-04

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  298 bits (766), Expect = e-105
 Identities = 79/180 (43%), Positives = 120/180 (66%), Gaps = 1/180 (0%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG L++ L K    +  ++LLM+GLD +GKTTIL K    ++ T +PT+GFN++ +E++ 
Sbjct: 3   MG-LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 61

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
               +WDVGGQ  +R+ WR+YF  T GL +VVDS+DR+R+ + + EL  +L +  L+ A 
Sbjct: 62  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LL+FANKQDLP  +    + + LEL S+    W IQ CSA++G+ L  G+DWL ++IS +
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  298 bits (766), Expect = e-105
 Identities = 83/181 (45%), Positives = 126/181 (69%), Gaps = 3/181 (1%)

Query: 1   MGKLISRLAKRF---FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVE 57
           MG  ++ L +         +I++LM+GLD +GKT+ILY++ LG++VTT PT+G N+E ++
Sbjct: 3   MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62

Query: 58  YKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS 117
           YKN SF VWD+GGQ  +R  WR YF DT  + +VVDS+DR+R+  A++EL+ +L ++EL 
Sbjct: 63  YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122

Query: 118 NAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
            + LL+FANKQDLP+    AE+A++L + S+  R W+I   S+ +G GL EG+DWL   +
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

Query: 178 S 178
            
Sbjct: 183 R 183

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  297 bits (763), Expect = e-105
 Identities = 80/180 (44%), Positives = 122/180 (67%), Gaps = 1/180 (0%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           MG L +R+  R F     K+++VGLD +GKTTILY+  + E+V T+PTIG NVE +   N
Sbjct: 1   MGILFTRI-WRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 59

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F +WD+GGQ  +R+ W  Y+ +T  +  VVDS+DRERIS  R EL+++L+  +L  A 
Sbjct: 60  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LL+FANKQD+   M  AE++  L+L S+   +W IQ+C A++G+GL +GL+W+ + + ++
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  294 bits (756), Expect = e-104
 Identities = 91/179 (50%), Positives = 126/179 (70%), Gaps = 1/179 (0%)

Query: 1   MGKLISRLAKRFFPQCR-IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYK 59
           MG + S +  + +   + +++L++GLD +GKTTILY++++GE+VTT PTIGFNVE + YK
Sbjct: 1   MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60

Query: 60  NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA 119
           N    VWD+GGQ  IR  WR Y+ DT  + FVVDS+D++R+S A  ELH +L + EL +A
Sbjct: 61  NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120

Query: 120 ALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
           ALLVFANKQD P  +  +EV+ +L L  L  R WSI + SAI G+G+ EGLDWL + I 
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  294 bits (756), Expect = e-104
 Identities = 55/179 (30%), Positives = 93/179 (51%), Gaps = 2/179 (1%)

Query: 3   KLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNK 61
              S L  R   +  ++L +VGL  SGKTT +  +  G+      PT+GFN+  +   N 
Sbjct: 9   HHSSGLVPRG-SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNV 67

Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
           +  +WD+GGQ + R++W  Y R    + ++VD++D+E+I  ++NELH +L   +L    +
Sbjct: 68  TIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV 127

Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LV  NK+DLP  +   E+ +K+ L ++  R     S S      +   L WL  +   +
Sbjct: 128 LVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  294 bits (754), Expect = e-103
 Identities = 111/180 (61%), Positives = 140/180 (77%), Gaps = 4/180 (2%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
            G L SR+    F + ++++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN
Sbjct: 17  RGSLFSRI----FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 72

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F VWDVGGQ+KIR LWRHYF++T GL FVVDS+DRER+ E+ +EL ++L ++EL +A 
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           LLVFANKQD+PN MP +E+ DKL L  L  R W +Q+  A  G GLY+GLDWLS+ +S +
Sbjct: 133 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  293 bits (753), Expect = e-103
 Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
            G     LA         KLL +GLD +GKTT+L+ +K   + T  PT     E +   N
Sbjct: 7   FGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F  +D+GG  + R LW+ YF +  G+ F+VD++D ER  EAR EL  + +  EL +  
Sbjct: 67  IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP 126

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSL-------GQRRWSIQSCSAISGQGLYEGLDWL 173
            ++  NK D PN +  AE+   L L +        GQR   +  CS +   G  E   WL
Sbjct: 127 FVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186

Query: 174 SNNI 177
           S  I
Sbjct: 187 SQYI 190

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  292 bits (751), Expect = e-103
 Identities = 76/178 (42%), Positives = 121/178 (67%), Gaps = 1/178 (0%)

Query: 4   LISRLAK-RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKS 62
           L+S L K +  P   +++L++GLD +GKTT+L ++   +I   TPT GFN+++V+ +   
Sbjct: 2   LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61

Query: 63  FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
             VWD+GGQ KIR  WR YF +T  L +V+DS+DR+R  E   EL ++L + +LS   +L
Sbjct: 62  LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL 121

Query: 123 VFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           +FANKQDL    P +E+A+ L L+++  R W IQSCSA++G+G+ +G++W+  N++ K
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  289 bits (742), Expect = e-102
 Identities = 114/161 (70%), Positives = 135/161 (83%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGGQ+KIR L
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A LLVFANKQDLPN M  A
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
           E+ DKL L+SL  R W IQ+  A SG GLYEGLDWLSN + 
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  289 bits (742), Expect = e-102
 Identities = 79/163 (48%), Positives = 113/163 (69%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++L++GLD +GKTTILY++++GE+VTT PTIGFNVE V YKN  F VWD+GG   IR  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 67

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WR Y+ +T  + +VVDS DR+RI  +++EL  +L + EL  A L+VFANKQD+   M ++
Sbjct: 68  WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS 127

Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           E+A+ L L +L  R+W I   SA  G GL E ++WL   +  +
Sbjct: 128 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  288 bits (739), Expect = e-101
 Identities = 76/177 (42%), Positives = 116/177 (65%), Gaps = 2/177 (1%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
                S L  R   + ++  ++VGLD +GKTTILY+  + E+V T+PTIG NVE +   N
Sbjct: 7   HHHHSSGLVPRGSQEHKV--IIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 64

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F +WD+GGQ  +R+ W  Y+ +T  +  VVDS+DRERIS  R EL+++L+  +L  A 
Sbjct: 65  TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 124

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           LL+FANKQD+   M  AE++  L+L S+   +W IQ+C A++G+GL +GL+W+ + +
Sbjct: 125 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  280 bits (719), Expect = 5e-98
 Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
                S L      +   KL+ +GLD +GKTT+L+ +K   +    PT+    E +    
Sbjct: 9   YSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
            +F  +D+GG  + R +W++Y     G+ F+VD +D ER+ E++ EL  +++D  ++N  
Sbjct: 69  MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP 128

Query: 121 LLVFANKQDLPNVMPTAEVADKLELY------------SLGQRRWSIQSCSAISGQGLYE 168
           +L+  NK D P  +    + +   LY             L  R   +  CS +  QG  E
Sbjct: 129 ILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGE 188

Query: 169 GLDWLSNNI 177
           G  W++  I
Sbjct: 189 GFRWMAQYI 197

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  278 bits (714), Expect = 2e-97
 Identities = 67/182 (36%), Positives = 104/182 (57%), Gaps = 6/182 (3%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNVEAVEY 58
                S L  R   +  +  L +GLD SGKTTI+ K+K          PTIGF++E  + 
Sbjct: 7   HHHHSSGLVPRGSKEVHV--LCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS 64

Query: 59  KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN 118
            + SF V+D+ GQ + R LW HY+++   + FV+DSSDR R+  A+ EL  +L+  ++ +
Sbjct: 65  SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH 124

Query: 119 --AALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
               +L FANK DL + + + +V+  L L ++  + W I +  AI G+GL EG+DWL + 
Sbjct: 125 RRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ 184

Query: 177 IS 178
           I 
Sbjct: 185 IQ 186

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  277 bits (709), Expect = 1e-94
 Identities = 114/162 (70%), Positives = 135/162 (83%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           ++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGGQ+KIR LW
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 226

Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           RHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A LLVFANKQDLPN M  AE
Sbjct: 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 286

Query: 139 VADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           + DKL L+SL  R W IQ+  A SG GLYEGLDWLSN +  +
Sbjct: 287 ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  212 bits (541), Expect = 1e-70
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 9/167 (5%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN---KSFCVWDVGGQNK 73
           +  +L VGL  SGKT +  ++  G+   T  +I  +    +  N    S  + D+ G   
Sbjct: 7   QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 66

Query: 74  IRA-LWRHYFRDTLGLTFVVDSSDRER-ISEARNELHQILSDNELSNAA--LLVFANKQD 129
           +R  L   +      + FVVDS+  +R + +    L+Q+L D+     +  LL+  NKQD
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQD 126

Query: 130 LPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN 176
           +        +  +LE      R     + S +           L   
Sbjct: 127 IAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS--TAPAQLGKK 171

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  194 bits (495), Expect = 6e-64
 Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 26/182 (14%)

Query: 17  RIKLLMVGLDASGKTTILYKMK-------LGEIVT----TTPTIGFN-----VEAVEYKN 60
             K++  G   SGKTT L  +         GE+V+       T+ F+     +  V+   
Sbjct: 14  NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSD-----NE 115
             F ++ V GQ    A  +   R   G+ FV DS+   R+      +  +  +       
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLT 132

Query: 116 LSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN 175
           L +  +++  NK+DLP+ +P   V   ++     + ++ +    A  G+G++E L  +S 
Sbjct: 133 LDDVPIVIQVNKRDLPDALPVEMVRAVVDP----EGKFPVLEAVATEGKGVFETLKEVSR 188

Query: 176 NI 177
            +
Sbjct: 189 LV 190

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  186 bits (473), Expect = 2e-60
 Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 14/173 (8%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA 76
           +  +++ G   SGKT++L  +    +  T  +    + A +Y      + D  G  K+R 
Sbjct: 12  QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRY 70

Query: 77  LWRHYFRDTL----GLTFVVDSS-DRERISEARNELHQILSDNELSNAA---LLVFANKQ 128
               Y +       GL F+VDS+ D ++++     L  ILS  E S      +L+  NK 
Sbjct: 71  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 130

Query: 129 DLPNVMPTAEVADKL--ELYSLGQRR-WSIQSCSAISGQ--GLYEGLDWLSNN 176
           +L    P +++ D L  E+  + +RR  S+        +       LD L + 
Sbjct: 131 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQST 183

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  182 bits (463), Expect = 3e-59
 Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 11/146 (7%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA 76
           +  +++ G   SGKT++L  +    +  T  +    + A +Y      + D  G  K+R 
Sbjct: 48  QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRY 106

Query: 77  LWRHYFRDTL----GLTFVVDSS-DRERISEARNELHQILSDNELSNAA---LLVFANKQ 128
               Y +       GL F+VDS+ D ++++     L  ILS  E S      +L+  NK 
Sbjct: 107 KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 166

Query: 129 DLPNVMPTAEVADKL--ELYSLGQRR 152
           +L    P +++ D L  E+  + +RR
Sbjct: 167 ELFTARPPSKIKDALESEIQKVIERR 192

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score =  151 bits (382), Expect = 1e-46
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 5/128 (3%)

Query: 58  YKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRER--ISEARNELHQILSDNE 115
           +   +      G +  +    +       G  +V ++   +R    +  + +  +     
Sbjct: 99  FSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF 158

Query: 116 LS-NAALLVF-ANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
            S    LLV     Q     MP   +A +L L  L    W +Q   A +  G   G++W+
Sbjct: 159 GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWI 217

Query: 174 SNNISVKN 181
              +  K 
Sbjct: 218 LEEVESKR 225

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score =  133 bits (337), Expect = 4e-40
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 10  KRFFPQCRIKLLMVGLDASGKTTI----LYKMKLGEIVTTTPTIGFNVEAVEYK-NKSFC 64
             +F   + ++L++GL  SGK++I     +KM   E +    T     + +      +F 
Sbjct: 13  NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQ 72

Query: 65  VWDVGGQNKIRALW---RHYFRDTLGLTFVVDSSDRERISEARNELHQILS--DNELSNA 119
           +WD  GQ             FR T  L +V+D+ D     EA   LH  +S       + 
Sbjct: 73  IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM--EALTRLHITVSKAYKVNPDM 130

Query: 120 ALLVFANKQDL 130
              VF +K D 
Sbjct: 131 NFEVFIHKVDG 141

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score =  136 bits (344), Expect = 6e-40
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 67  DVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL---SNAALLV 123
             G +  +    +       G  +V ++   +R        H +   +     S   LLV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252

Query: 124 FA-NKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN 181
            +   Q     MP   +A +L L  L    W +Q   A +  G   G++W+   +  K 
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score =  115 bits (289), Expect = 7e-32
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 11/139 (7%)

Query: 17  RIKLLMVGLDASGKTTI----LYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ 71
             KLL++G   SGK+++           +      TI      + +  N +  +WD GGQ
Sbjct: 3   GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 72  -----NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS-NAALLVFA 125
                N       H F+    L  V D    E + +       +    + S +A + V  
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 126 NKQDLPNVMPTAEVADKLE 144
           +K DL  +    E+   + 
Sbjct: 123 HKMDLVQLDKREELFQIMM 141

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 84.0 bits (207), Expect = 6e-20
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 20  LLMVGLDASGKTTIL----YKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR 75
           +L++G+   GK++I     + M+  + +    T   ++E          V ++ GQ    
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60

Query: 76  ALW---RHYFRDTLGLTFVVDSSDRERISEARNELHQILS--DNELSNAALLVFANKQDL 130
                    F+    L +V+DS D      A   L  I+        +  + V  +K D 
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYI--NAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 54.1 bits (131), Expect = 8e-10
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 16/136 (11%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WD 67
           +K+L++G    GK+ +L +    +   +   TIG     +++K K+  +         WD
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG-----IDFKIKTVDINGKKVKLQIWD 58

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R +   Y+R  +G+  V D +D    +  +     + +++    A LL+  NK
Sbjct: 59  TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV-NEHANDEAQLLLVGNK 117

Query: 128 QDLPNVMPTAEVADKL 143
            D+   + TA+  + L
Sbjct: 118 SDMETRVVTADQGEAL 133

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 13/138 (9%)

Query: 17  RIKLLMVGLDASGKTTILY---KMKLGEIVTTTPTIG--FNVEAVEYKNKS-----FCVW 66
           R+KL++VG   SGKTT+L    K K  ++   + T+G       ++ ++K        VW
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 67  DVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFA 125
           D  G+ +  +   H+         V D S  +  +   +  L  I      S++ +++  
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI--KARASSSPVILVG 119

Query: 126 NKQDLPNVMPTAEVADKL 143
              D+ +         K+
Sbjct: 120 THLDVSDEKQRKACMSKI 137

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 55.2 bits (132), Expect = 1e-09
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 42  IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----- 96
           +     T G      +    +F ++DVGGQ   R  W   F D   + FVV SS      
Sbjct: 198 LRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVI 257

Query: 97  -----RERISEARNELHQILSDNELSNAALLVFANKQDL 130
                  R+ EA N    I ++  L   ++++F NKQDL
Sbjct: 258 REDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIG--FNVEAVEYKNKS--FCVWDV 68
           PQ + KL++VG   +GKTT + +   GE       T+G   +            F VWD 
Sbjct: 12  PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 71

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ K   L   Y+        + D + R       N    ++   E  N  +++  NK 
Sbjct: 72  AGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKV 129

Query: 129 DLPNVMPTAE 138
           D+ +    A+
Sbjct: 130 DIKDRKVKAK 139

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 16/136 (11%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WD 67
           +K+L++G    GK+ +L +    +   +   TIG     +++K K+  +         WD
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG-----IDFKIKTVDINGKKVKLQLWD 75

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R +   Y+R  +G+  V D +D    +  +     + +++    A LL+  NK
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNK 134

Query: 128 QDLPNVMPTAEVADKL 143
            D+   + TA+  + L
Sbjct: 135 SDMETRVVTADQGEAL 150

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WD 67
            KLL++G    GKT +L++        T   TIG     +++K ++  +         WD
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG-----IDFKIRTIELDGKRIKLQIWD 63

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R +   Y+R  +G+  V D ++ +     RN +  I  ++  ++   ++  NK
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI-EEHASADVEKMILGNK 122

Query: 128 QDLPN 132
            D+ +
Sbjct: 123 CDVND 127

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV---------WD 67
            KLL++G    GK+ +L +        +   TIG     V++K ++  +         WD
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG-----VDFKIRTIELDGKTIKLQIWD 88

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R +   Y+R   G+  V D +D+E  +  +  L +I       N   L+  NK
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-DRYASENVNKLLVGNK 147

Query: 128 QDLPN 132
            DL  
Sbjct: 148 CDLTT 152

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 51.4 bits (124), Expect = 9e-09
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WD 67
            KLL++G  + GKT+ L++            T+G     +++K K+            WD
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG-----IDFKVKTVYRHDKRIKLQIWD 77

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R +   Y+R  +G   + D +++E  +  ++   QI       NA +++  NK
Sbjct: 78  TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI-KTYSWDNAQVILVGNK 136

Query: 128 QDLPN 132
            DL +
Sbjct: 137 CDLED 141

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 51.4 bits (124), Expect = 9e-09
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV---------WD 67
            K +++G    GK+ +L +            TIG     VE+  +   +         WD
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-----VEFGARMVNIDGKQIKLQIWD 76

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ   R++ R Y+R   G   V D + RE  +   + L      +  SN  +++  NK
Sbjct: 77  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIMLIGNK 135

Query: 128 QDLPN 132
            DL +
Sbjct: 136 SDLES 140

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 16/148 (10%)

Query: 1   MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYK 59
            G +    AK F  Q   K+++ G  A GK++ L ++   E     + T+G     V+++
Sbjct: 12  SGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG-----VDFQ 66

Query: 60  NKSFCV---------WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQI 110
            K+  V         WD  GQ + R++ + YFR   G+  + D +  +     R  +  I
Sbjct: 67  MKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI 126

Query: 111 LSDNELSNAALLVFANKQDLPNVMPTAE 138
             D       +++  NK D+ +   T  
Sbjct: 127 -EDAAHETVPIMLVGNKADIRDTAATEG 153

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 21/139 (15%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFCV---------WD 67
           +K+L++G    GK+++L +            TIG     V++K K+  V         WD
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-----VDFKVKTISVDGNKAKLAIWD 70

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RISEARNELHQILSDNELSNAALLVF 124
             GQ + R L   Y+R   G+  V D + R+   ++    NEL    + N++ N  +LV 
Sbjct: 71  TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN--MLV- 127

Query: 125 ANKQDLPNVMPTAEVADKL 143
            NK D  N         K 
Sbjct: 128 GNKIDKENREVDRNEGLKF 146

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 16  CRIKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKS--FCVWDVGG 70
             IKL+++G  A GK++I+ +    +      PTIG  F  + V     +  F +WD  G
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 71  QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDL 130
           Q +  +L   Y+R+      V D +  +   +AR+ + + L +    +  + +  NK D 
Sbjct: 62  QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDX 120

Query: 131 PNVMPTAEVA 140
                  +VA
Sbjct: 121 LQEGGERKVA 130

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE----- 98
              PT G +    E KN  F + DVGGQ   R  W   F     + F+V SS+ +     
Sbjct: 184 ARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLME 243

Query: 99  -----RISEARNELHQILSDNELSNAALLVFANKQDL 130
                R++E+ N    I+++   SN ++++F NK DL
Sbjct: 244 DRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSF--CVWDVGGQN 72
            KLL++G  + GKT+ L++            T+G  F V+ V    K     +WD  GQ 
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R +   Y+R  +G   + D ++ E  +  ++   QI       NA +++  NK D+  
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI-KTYSWDNAQVILVGNKCDMEE 142

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV---------WD 67
            KLL++G    GK+ +L +        +   TIG     V++K ++  +         WD
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG-----VDFKIRTIELDGKTIKLQIWD 71

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R +   Y+R   G+  V D +D+E  +  +  L +I       N   L+  NK
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-DRYASENVNKLLVGNK 130

Query: 128 QDLPN 132
            DL  
Sbjct: 131 CDLTT 135

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV---------WD 67
            K++++G    GKT +L +    E    +  TIG     VE+  ++  +         WD
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG-----VEFSTRTVMLGTAAVKAQIWD 80

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             G  + RA+   Y+R  +G   V D +  +  +     L ++  D+  +   +++  NK
Sbjct: 81  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL-YDHAEATIVVMLVGNK 139

Query: 128 QDLPN 132
            DL  
Sbjct: 140 SDLSQ 144

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 17/126 (13%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT--PTIGFNVEAVEYKNKSFCV---------W 66
            K+++VG    GKT +L + K G  +  T   T+G     ++++NK   V         W
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG-----IDFRNKVLDVDGVKVKLQMW 65

Query: 67  DVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFAN 126
           D  GQ + R++   Y+RD   L  + D +++      +  L +I  +    + AL++  N
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI-HEYAQHDVALMLLGN 124

Query: 127 KQDLPN 132
           K D  +
Sbjct: 125 KVDSAH 130

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV---------WD 67
            KLL++G    GK+++L +        +   TIG     V++K ++  +         WD
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG-----VDFKIRTVEINGEKVKLQIWD 64

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R +   Y+R T G+  V D +  E     +  LH+I  +    +   ++  NK
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNK 122

Query: 128 QDLPN 132
            D P 
Sbjct: 123 NDDPE 127

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIG--FNVEAVEYKNKS--FCVWDVGGQN 72
            K+L++G  + GKT+ L++            T+G  F V+ +   +K     +WD  G  
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R +   Y+R  +G   + D ++ E  +  ++   QI       NA +L+  NK D+ +
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVLLVGNKCDMED 127

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV---------WD 67
            K++++G    GKT ++ +   G        TIG     V++  K+  +         WD
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG-----VDFMIKTVEINGEKVKLQIWD 81

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R++ + Y+R    L    D +  E        L +I      +    ++  NK
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI-EQYASNKVITVLVGNK 140

Query: 128 QDLPN 132
            DL  
Sbjct: 141 IDLAE 145

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 16/124 (12%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WDV 68
           K L++G   +GK+ +L++    +    +  TIG     VE+ ++   V         WD 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG-----VEFGSRVVNVGGKTVKLQIWDT 81

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ + R++ R Y+R   G   V D + RE  +     L          N  +++  NK+
Sbjct: 82  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA-RTLASPNIVVILCGNKK 140

Query: 129 DLPN 132
           DL  
Sbjct: 141 DLDP 144

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WDV 68
           K++++G    GK+ +L +    E  + +  TIG     VE+  +S  V         WD 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG-----VEFATRSIQVDGKTIKAQIWDT 61

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ + R +   Y+R  +G   V D +           L ++  D+  SN  +++  NK 
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL-RDHADSNIVIMLVGNKS 120

Query: 129 DLPN 132
           DL +
Sbjct: 121 DLRH 124

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 16/124 (12%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WDV 68
           K +++G    GK+ +L++    + +     TIG     VE+  +   V         WD 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG-----VEFGTRIIEVSGQKIKLQIWDT 71

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ + RA+ R Y+R   G   V D + R   +   + L     +    N  +++  NK 
Sbjct: 72  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIILIGNKA 130

Query: 129 DLPN 132
           DL  
Sbjct: 131 DLEA 134

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 50.1 bits (119), Expect = 7e-08
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 42  IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----- 96
           + T   T G       +K+  F ++DVGGQ   R  W H F     + F V  SD     
Sbjct: 174 LRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 233

Query: 97  -----RERISEARNELHQILSDNELSNAALLVFANKQDL 130
                  R+ E+      I ++   ++ ++++F NK+DL
Sbjct: 234 AEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WD 67
           ++++++G    GKT+++ +            T+G     V++K K+  +         WD
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG-----VDFKIKTVELRGKKIRLQIWD 81

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ +  ++   Y+R   G+  V D + +E   +    +  I       +A LL+  NK
Sbjct: 82  TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI-DKYASEDAELLLVGNK 140

Query: 128 QDLPN 132
            D   
Sbjct: 141 LDCET 145

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKS--FCVWDV 68
           P  + KL+ +G  + GKT+++ +        T   TIG  F  + +  ++++    +WD 
Sbjct: 13  PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 72

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            G  + R+L   Y RD+     V D ++     +    +  +      S+  +++  NK 
Sbjct: 73  AGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKT 131

Query: 129 DLPN 132
           DL +
Sbjct: 132 DLAD 135

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 48.7 bits (117), Expect = 8e-08
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 16/124 (12%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WDV 68
           K L++G   +GK+ +L++    +    +  TIG     VE+ +K   V         WD 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG-----VEFGSKIINVGGKYVKLQIWDT 66

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ + R++ R Y+R   G   V D + RE  +   N L          N  +++  NK+
Sbjct: 67  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVIILCGNKK 125

Query: 129 DLPN 132
           DL  
Sbjct: 126 DLDA 129

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WD 67
            KLL++G    GK+ +L +            TIG     V++K K+  +         WD
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG-----VDFKIKTVELDGKTVKLQIWD 63

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R +   Y+R + G+  V D +D+E  +  +  L +I      S    L+  NK
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI-DRYATSTVLKLLVGNK 122

Query: 128 QDLPN 132
            DL +
Sbjct: 123 CDLKD 127

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 18/138 (13%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WDV 68
           K++++G    GK++++ +    +       TIG     VE+ NK   V         WD 
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG-----VEFLNKDLEVDGHFVTMQIWDT 63

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVFA 125
            GQ + R+L   ++R +          D    + +S  + E        E  +   ++  
Sbjct: 64  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123

Query: 126 NKQDLPNVMPTAEVADKL 143
           NK D+     + E A   
Sbjct: 124 NKIDISERQVSTEEAQAW 141

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 16/124 (12%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WDV 68
           K++++G    GK+ +L +    E  + +  TIG     VE+  ++  +         WD 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG-----VEFATRTLEIEGKRIKAQIWDT 69

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ + RA+   Y+R  +G   V D S         + L ++  +N   N A+ +  NK 
Sbjct: 70  AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL-RENADDNVAVGLIGNKS 128

Query: 129 DLPN 132
           DL +
Sbjct: 129 DLAH 132

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIG--FNVEAVEYKNKSFC---------- 64
           IKLL +G    GKTT LY+    +       T+G  F  + V Y  +             
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 65  --VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
             +WD  GQ + R+L   +FRD +G   + D + ++     RN + Q+ ++    N  ++
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 123 VFANKQDLPN 132
           +  NK DLP+
Sbjct: 146 LIGNKADLPD 155

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 21/143 (14%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV---------WDV 68
           K++++G    GK+ +L +    E  + +  TIG     VE+  +S  V         WD 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG-----VEFATRSIQVDGKTIKAQIWDT 85

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            G  + RA+   Y+R  +G   V D +           L ++  D+  SN  +++  NK 
Sbjct: 86  AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL-RDHADSNIVIMLVGNKS 144

Query: 129 DLPN--VMPTAE---VADKLELY 146
           DL +   +PT E    A+K  L 
Sbjct: 145 DLRHLRAVPTDEARAFAEKNGLS 167

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-IVTTTPTIG---FNVEAVEYKNKS--FCVWDVGGQN 72
           K+ ++G    GKTT + ++  G        T+G     V  ++ +     F VWD  GQ 
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           K   L   Y+    G     D + R         + +       + A ++V ANK D+ N
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF-QAVVGNEAPIVVCANKIDIKN 131

Query: 133 --VMPTAEV---ADKLEL 145
              +    V         
Sbjct: 132 RQKISKKLVMEVLKGKNY 149

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 16/125 (12%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV---------WD 67
            KL++VG  + GKT ++ + K G        TIG     V++  K+  +         WD
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG-----VDFTMKTLEIQGKRVKLQIWD 84

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ + R + + Y+R   G     D + R       + +  +      SN   L+  NK
Sbjct: 85  TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV-RKYAGSNIVQLLIGNK 143

Query: 128 QDLPN 132
            DL  
Sbjct: 144 SDLSE 148

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 19/129 (14%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV----------W 66
           +K++++G    GKT+++++    +       TIG      ++  K   V          W
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG-----ADFLTKEVTVDGDKVATMQVW 63

Query: 67  DVGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLV 123
           D  GQ + ++L   ++R       V D ++    E I   R+E     + N       ++
Sbjct: 64  DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123

Query: 124 FANKQDLPN 132
             NK D   
Sbjct: 124 LGNKIDAEE 132

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKS--FCVWDV 68
           P  + KL+ +G  + GKT+++ +        T   TIG  F  + +  ++++    +WD 
Sbjct: 11  PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 70

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ + R+L   Y RD+     V D ++     +    +  +      S+  +++  NK 
Sbjct: 71  AGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIMLVGNKT 129

Query: 129 DLPN 132
           DL +
Sbjct: 130 DLSD 133

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV------------EAVEYKN 60
               IK+ ++G   +GKT++L ++         + T G NV               E K 
Sbjct: 38  HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKE 97

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
             F  WD GGQ  + A  + +   +     ++DS            + +         + 
Sbjct: 98  CLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEK-----YGGKSP 152

Query: 121 LLVFANKQDLPN 132
           ++V  NK D   
Sbjct: 153 VIVVMNKIDENP 164

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 46.7 bits (112), Expect = 4e-07
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKS--FCVWDV 68
               +K+ ++G    GK++I+++           PTIG  F  + V+Y+N+   F +WD 
Sbjct: 3   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFA 125
            G  + RAL   Y+R +     V D +  E  S  +N   EL Q        +  + +  
Sbjct: 63  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAG 118

Query: 126 NKQDLPN 132
           NK DL +
Sbjct: 119 NKCDLTD 125

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV---------WD 67
           +K++++G    GKT+++ +    +       TIG      ++  K   V         WD
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG-----ADFLTKEVMVDDRLVTMQIWD 63

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVF 124
             GQ + ++L   ++R       V D +     + +   R+E     S  +  N   +V 
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123

Query: 125 ANKQDLPN-VMPTAEVADKLE 144
            NK DL N  + T        
Sbjct: 124 GNKIDLENRQVATKRAQAWCY 144

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 20/133 (15%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV------- 65
              ++K++++G  ASGKT++               TIG     +++  +   +       
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG-----LDFFLRRITLPGNLNVT 57

Query: 66  ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNA 119
              WD+GGQ     +   Y     G+  V D ++    E + +    + ++  ++E +  
Sbjct: 58  LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE-TQP 116

Query: 120 ALLVFANKQDLPN 132
            + +  NK DL +
Sbjct: 117 LVALVGNKIDLEH 129

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 44  TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD------- 96
              PT G      + ++  F + DVGGQ   R  W H F +   + F+V  S+       
Sbjct: 150 VRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209

Query: 97  ---RERISEARNELHQILSDNELSNAALLVFANKQDL 130
                R+ E++     I++     N+++++F NK+DL
Sbjct: 210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKS--FCVWDV 68
               +K+ ++G    GK++I+ +           PTIG  F  + V   N+   F +WD 
Sbjct: 20  AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 79

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ +  +L   Y+R +     V D + ++     +  + ++  ++   N  + +  NK 
Sbjct: 80  AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL-KEHGPENIVMAIAGNKC 138

Query: 129 DLPN 132
           DL +
Sbjct: 139 DLSD 142

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 46.0 bits (110), Expect = 8e-07
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 12/127 (9%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKS--FCVWDV 68
             C+ KL+++G  A GK++++ +   G+       TIG  F  + V   + +  F +WD 
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFA 125
            GQ +  +L   Y+R       V D ++ E  + A+N   EL +  S     N  + +  
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSG 118

Query: 126 NKQDLPN 132
           NK DL N
Sbjct: 119 NKADLAN 125

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 25/135 (18%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV----------- 65
           IK L +G    GKT++LY+   G+       T+G     ++++ K               
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG-----IDFREKRVVYRANGPDGAVGR 66

Query: 66  --------WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELS 117
                   WD  G  + R+L   +FRD +G   + D ++ +     RN + Q+       
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126

Query: 118 NAALLVFANKQDLPN 132
           N  +++  NK DL +
Sbjct: 127 NPDIVLCGNKSDLED 141

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEAVEYKNKSFCV---------WD 67
           IK+++VG  A GK++++ +   G        TIG     V++  +   V         WD
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG-----VDFLERQIQVNDEDVRLMLWD 60

Query: 68  VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
             GQ +  A+ + Y+R       V  ++DRE      +   ++    E+ +    +  NK
Sbjct: 61  TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNK 118

Query: 128 QDLPN 132
            DL +
Sbjct: 119 IDLLD 123

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 38/177 (21%), Positives = 60/177 (33%), Gaps = 15/177 (8%)

Query: 6   SRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFN-VEAVEYKNKSF 63
           S +   +F    IK ++VG  A GKT +L             PT+  N    V    K  
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 78

Query: 64  CV--WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
            +  WD  GQ     L    +  T                  R + +  +  +   N  +
Sbjct: 79  NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPI 137

Query: 122 LVFANKQDLPNVMPTAEVADKLEL----YSLGQR-RWSIQS-----CSAISGQGLYE 168
           ++   K DL +   T E   + +L    Y  G      I +     CSA++ +GL  
Sbjct: 138 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 194

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 22/129 (17%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCV---------WD 67
            K++++G    GKT + Y+   G     T  TIG     V+++ ++  +         WD
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG-----VDFRERAVDIDGERIKIQLWD 75

Query: 68  VGGQNKIR-ALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLV 123
             GQ + R ++ +HY+R+   + FV D ++      +     E  Q L  N++    +LV
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP--RILV 133

Query: 124 FANKQDLPN 132
             NK DL +
Sbjct: 134 -GNKCDLRS 141

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKS--FCVWDVGGQN 72
            K++++G    GKT+++ +    +       T+G  F  + +    K     +WD  GQ 
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFANKQD 129
           +  AL   Y+RD+ G   V D +D +   + +N   EL ++L +       L +  NK D
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKID 122

Query: 130 LPN 132
           L  
Sbjct: 123 LEK 125

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 26/169 (15%)

Query: 20  LLMVGLDASGKTTILYKMKLGEI-VTTTP--TIGFNVEAVEYKNKSFCVWDVGG------ 70
           +++ G    GK++ +  +    + V +    T    V   ++K   + + D  G      
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91

Query: 71  -------QNKIRALWRHYFRDTLGLTFVVDSSDRERIS--EARNELHQILSDNELSNAAL 121
                     I AL  H     L   F++D S++  ++  E  N  + I   +  SN ++
Sbjct: 92  ENRNTIEMTTITAL-AHINGVIL---FIIDISEQCGLTIKEQINLFYSI--KSVFSNKSI 145

Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSC--SAISGQGLYE 168
           ++  NK D  N+   +     L    L   +  I+    S ++G G+ +
Sbjct: 146 VIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQ 194

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 23/164 (14%)

Query: 20  LLMVGLDASGKTTILYKMKLGEIVTTTP---TIGFNVEAVEYKNKSFCVWDV-------- 68
           +++ G    GK+T+L  +   +    +    T G NV   E     + + D         
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229

Query: 69  GGQNKI--RALWRHYFRDTLGLTFVVDSSDRER--ISEARNELHQILSDNELSNAALLVF 124
             +N+I  +A+    +   L + ++ D S+     + E  +   ++    E  +   LV 
Sbjct: 230 SERNEIEKQAILALRYLGNL-IIYIFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPFLVV 286

Query: 125 ANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE 168
            NK D+ +      +   ++     ++  +    SA+ G G+  
Sbjct: 287 INKIDVADEENIKRLEKFVK-----EKGLNPIKISALKGTGIDL 325

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 51  FNVEAV-EYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE----------R 99
           F+     +   + + ++DVGGQ   R  W H F     + F    S+ +          R
Sbjct: 172 FSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNR 231

Query: 100 ISEARNELHQILSDNELSNAALLVFANKQDL 130
           + E +     +L        + ++F NK D+
Sbjct: 232 MMETKELFDWVLKQPCFEKTSFMLFLNKFDI 262

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 4/118 (3%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG-FNVEAVEYKNKSFC--VWDVGGQNKI 74
           KL++VG    GK+ +  +      V+   PTI     +            + D  GQ + 
Sbjct: 11  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 70

Query: 75  RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
            A+   Y R   G   V   +DR+  +E      QIL   +  +  +++  NK DL +
Sbjct: 71  GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           KL++VG    GK+ +  ++     V    PTI   +  + V    ++    + D  GQ +
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 81

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
             A+   Y R   G   V   ++ +  ++      QI    +  +  +++  NK DLP 
Sbjct: 82  YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           KL++VG D  GK+ +  ++     V    PTI   +  + V    ++    + D  GQ +
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 64

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
             A+   Y R   G   V   ++ +   +  +   QI    +  +  +++  NK DLP+
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 12/127 (9%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIG--FNVEAVEYKNKS--FCVWDV 68
                KL+++G   +GK++++ +    + V     TIG  F  + +   + +  F +WD 
Sbjct: 9   KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDT 68

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARN---ELHQILSDNELSNAALLVFA 125
            GQ +  +L   Y+R       V D +++     A+    EL    +     N  + +  
Sbjct: 69  AGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAG 124

Query: 126 NKQDLPN 132
           NK DL +
Sbjct: 125 NKSDLLD 131

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 4/118 (3%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG-FNVEAVEYKNKSFC--VWDVGGQNKI 74
           K++++G    GK+ +  +   G  +    PTI  F  + +E  +      + D  G  + 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 75  RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
            ++   Y ++  G   V    +++   + +    QI+         +++  NK DL +
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 4/118 (3%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG-FNVEAVEYKNKSFC--VWDVGGQNKI 74
           KL++VG    GK+ +  +      V    PTI    ++  E  N+     V D  GQ + 
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79

Query: 75  RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
            A+   Y R   G   V   +D+            IL   +  +  +++ ANK DL +
Sbjct: 80  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 30/133 (22%), Positives = 43/133 (32%), Gaps = 23/133 (17%)

Query: 17  RIKLLMVGLDASGKTTIL--YKMKLGE-IVTTTPTIGFNVEAVEYKNKSFCV-------- 65
           R K+ +VG    GK+ ++  +  K  + +     T G     VE       +        
Sbjct: 20  RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG-----VEVVVAPVTIPDTTVSVE 74

Query: 66  ---WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNA 119
               D  G +  +     Y+        V D S     E        L     D E    
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134

Query: 120 ALLVFANKQDLPN 132
           A+LV ANK DLP 
Sbjct: 135 AVLV-ANKTDLPP 146

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 63  FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
           F +WD  GQ +  ++   Y+R       V D S+   +  A+  ++Q+      SN  ++
Sbjct: 95  FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIII 151

Query: 123 VFANKQDLPNVMPTAEVADKL 143
           + ANK D            K 
Sbjct: 152 LVANKIDKNKFQVDILEVQKY 172

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           K++MVG    GK+ +  +    E V    PT    +  + V    +     + D  GQ  
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 78

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
             A+  +YFR   G   V   ++ E  +   +   QIL   E  N   L+  NK DL +
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           KL++VG    GK+ +  ++     V    PTI   +  + V    ++    + D  GQ +
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEE 63

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
             A+   Y R   G   V   ++ +   +      QI    +  +  +++  NK DL  
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           K++MVG    GK+ +  +    E V    PT    +  + V    +     + D  GQ  
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 64

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
             A+  +YFR   G   V   ++ E  +   +   QIL   E  N   L+  NK DL +
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 11/121 (9%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           ++++ G    GK++++ +   G    T  PTI   +    +          + D  G ++
Sbjct: 10  RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQV-ISCDKSVCTLQITDTTGSHQ 68

Query: 74  IRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVFANKQDL 130
             A+ R           V   + +   E +      + QI    E  +  +++  NK D 
Sbjct: 69  FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE--DIPVMLVGNKCDE 126

Query: 131 P 131
            
Sbjct: 127 T 127

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           K++MVG    GK+ +  +    E V    PT    +  + V    +     + D  GQ  
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQED 74

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
             A+  +YFR   G   V   ++ E  +   +   QIL   E  N   L+  NK DL +
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 34/166 (20%), Positives = 54/166 (32%), Gaps = 15/166 (9%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN--VEAVEYKNKSFCV--WDVGGQN 72
            IK ++VG  A GKT +L                F+     V    K   +  WD  GQ 
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
               L    +  T                  R + +  +  +   N  +++   K DL +
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRD 123

Query: 133 VMPTAEVADKLEL----YSLGQR-RWSIQS-----CSAISGQGLYE 168
              T E   + +L    Y  G      I +     CSA++ +GL  
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 169

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           KL+++G    GK+ +  +   G  V    PTI   +  + VE   +     + D  G  +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTEQ 63

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
             A+   Y ++  G   V   + +   ++ ++   QIL   +  +  +++  NK DL +
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 11/122 (9%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDVGGQNK 73
           ++ + G    GK++++ +   G    +  PT+   +    +          + D  G ++
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV-ISCDKSICTLQITDTTGSHQ 63

Query: 74  IRALWRHYFRDTLGLTFVVDSSDR---ERISEARNELHQILSDNELSNAALLVFANKQDL 130
             A+ R           V   + R   E +     ++ +I  D E  +  +++  NK D 
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE--SIPIMLVGNKCDE 121

Query: 131 PN 132
             
Sbjct: 122 SP 123

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG--FNVEAVEYKNKSFC--VWDV 68
                K+ ++G  + GK+++  +   G+ V +  PTI   F    +    + +   + D 
Sbjct: 3   QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDT 61

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ++     + Y  D  G   V   +  +     +    ++L         +++  NK+
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 129 DLPN 132
           DL  
Sbjct: 122 DLHM 125

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 17 RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA---VEYKNKSFCVWDVGGQN 72
          + K+++VG    GKT +L+            PT+  N  A   ++ +     +WD  G  
Sbjct: 7  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66

Query: 73 KIRALWRHYFRDTLG--LTFVVDSSD 96
              +    + D+    + F +   +
Sbjct: 67 YYDNVRPLSYPDSDAVLICFDISRPE 92

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFNVEA---VEYKNKSFCVWDVGGQN 72
           R KL++VG    GKT +L  +       T  PT+  N  A    E +     +WD  G  
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86

Query: 73  KIRALWRHYFRDT--LGLTFVVDSSD 96
               +    + D+  + L F +   +
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPE 112

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 17/167 (10%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFN-VEAVEYKNK--SFCVWDVGGQN 72
           R KL++VG  A GKT +L      E      PT+  N V  +E   K     +WD  GQ 
Sbjct: 25  RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 84

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNE-LHQILSDNELSNAALLVFANKQDLP 131
               L    + DT  +         + +     + + ++       N  +++ ANK+DL 
Sbjct: 85  DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP--NVPIILVANKKDLR 142

Query: 132 NVMPTAEVADKLEL----YSLGQR-RWSIQS-----CSAISGQGLYE 168
           +         +++        G+     IQ+     CSA + +G+ E
Sbjct: 143 SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVRE 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	100.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.98
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.98
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.98
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.98
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.98
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.98
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.98
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.98
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.98
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.98
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.98
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.98
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.98
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.98
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.98
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.98
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.98
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.98
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.98
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.98
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.98
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.98
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.98
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.98
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.98
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.98
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.98
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.97
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.97
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.94
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.94
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.93
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.92
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.92
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.91
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.9
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.9
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.9
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.9
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.9
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.89
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.89
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.89
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.89
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.89
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.89
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.89
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.89
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.88
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.87
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.87
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.87
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.86
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.86
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.85
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.85
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.83
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.83
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.83
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.83
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.82
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.82
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.8
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.78
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.77
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.75
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.71
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.71
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.71
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.69
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.69
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.68
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.67
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.66
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.66
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.64
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.64
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.62
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.61
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.61
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.56
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.54
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.51
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.34
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.33
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.12
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.11
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.1
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.1
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.05
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.02
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.01
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.01
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.99
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.95
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.9
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.86
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.68
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.54
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.53
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.45
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.3
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.29
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.19
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.09
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.07
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.01
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.78
2xxa_A	433	Signal recognition particle protein; protein trans	97.77
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.72
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.67
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.61
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.56
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.5
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.5
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.49
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.49
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.49
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.48
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.46
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.45
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.44
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.44
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.44
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.43
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.42
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.41
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.39
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.38
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.37
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.37
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.33
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.33
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.33
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.32
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.31
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.31
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.31
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.31
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.3
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.29
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.29
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.28
1g6h_A	257	High-affinity branched-chain amino acid transport	97.27
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.27
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.27
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.27
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.26
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.26
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.26
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.26
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.25
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.25
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.25
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.24
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.24
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.24
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.24
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.24
3end_A	307	Light-independent protochlorophyllide reductase ir	97.23
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.23
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.23
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.22
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.22
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.22
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.22
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.21
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.21
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.21
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.2
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.2
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.2
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.2
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.2
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.2
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.2
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.2
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.19
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.19
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.18
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.18
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.18
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.18
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.18
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.17
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.16
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.16
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.16
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.15
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.14
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.13
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.13
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.13
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.12
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.12
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.11
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.11
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.11
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.1
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.1
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.1
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.1
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.09
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.09
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.08
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.08
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.06
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.05
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.05
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.04
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.04
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.04
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.02
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.02
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.02
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.02
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.01
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.01
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.01
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.01
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.0
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.0
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.0
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.99
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.99
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.99
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.99
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.99
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.99
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.98
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.98
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.97
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.97
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.96
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.96
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.95
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.93
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.92
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.92
1via_A	175	Shikimate kinase; structural genomics, transferase	96.91
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.91
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.9
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.9
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.9
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.9
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.89
3bos_A	242	Putative DNA replication factor; P-loop containing	96.89
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.88
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.87
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.87
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.87
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.86
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.86
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.85
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.85
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.84
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.84
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.83
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.83
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.83
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.82
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.82
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.81
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.81
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.8
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.79
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.79
3co5_A	143	Putative two-component system transcriptional RES	96.79
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.78
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.77
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.76
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.76
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.75
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.72
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.72
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.72
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.71
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.71
2og2_A	359	Putative signal recognition particle receptor; nuc	96.7
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.7
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.7
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.69
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.69
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.68
3uc9_A	233	Increased recombination centers protein 6; rossman	96.68
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.67
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.66
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.65
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.65
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.64
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.63
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.63
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.6
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.6
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.59
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.58
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.57
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.56
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.56
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.56
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.55
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.54
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.54
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.51
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.5
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.49
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.49
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.49
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.47
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.47
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.47
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.46
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.46
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.45
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.44
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.44
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.44
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.43
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.42
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.42
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.41
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.41
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.38
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.36
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.35
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.35
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.34
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.33
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.33
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.33
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.32
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.32
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.32
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.31
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.3
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.29
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.29
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.29
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.28
2qgz_A	308	Helicase loader, putative primosome component; str	96.28
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.26
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.26
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.23
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.22
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.22
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.21
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.2
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.2
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.2
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.18
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.15
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.15
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.14
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.14
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.13
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.13
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.11
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.11
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	96.11
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.11
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.11
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.09
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.08
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.04
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.03
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.03
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.99
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.97
3pvs_A	447	Replication-associated recombination protein A; ma	95.94
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.9

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=5.7e-39  Score=217.40  Aligned_cols=180  Identities=51%  Similarity=0.922  Sum_probs=156.9

Q ss_pred             CcchHHHHhhhhCC-CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233            1 MGKLISRLAKRFFP-QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   79 (181)
                      ||.+++++.+.+++ ++.++|+++|++|+|||||+++++++.+..+.+|.+.....+.+.+..+.+|||||++.+...+.
T Consensus         1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (183)
T 1moz_A            1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR   80 (183)
T ss_dssp             -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred             CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence            89999999998887 89999999999999999999999988888888999988888888899999999999999888899


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .+++.+|++++|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  160 (183)
T 1moz_A           81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS  160 (183)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence            99999999999999999999999999999987765457899999999999988777788887776655555677999999


Q ss_pred             ccCCCCHHHHHHHHHhhhhcc
Q 030233          160 AISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (181)
                      |++|+|++++|++|.+.+.++
T Consensus       161 a~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          161 AIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             GGGTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhc
Confidence            999999999999999988654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-38  Score=216.23  Aligned_cols=178  Identities=44%  Similarity=0.838  Sum_probs=153.7

Q ss_pred             CcchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233            1 MGKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~   80 (181)
                      ||.+++++++ ++..+.++|+++|++|+|||||+++++++.+..+.+|.+.+...+.+.+..+.+|||||++.+...+..
T Consensus         1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   79 (187)
T 1zj6_A            1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT   79 (187)
T ss_dssp             -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred             CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence            8988999888 777889999999999999999999999888778888998888888889999999999999999999999


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +++.+|++++|+|++++++++....|+..++......+.|+++|+||+|+.+....+++.+.+....+...+++++++||
T Consensus        80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa  159 (187)
T 1zj6_A           80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCA  159 (187)
T ss_dssp             HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccC
Confidence            99999999999999999999999999999887644468999999999999877777777777665444556789999999


Q ss_pred             cCCCCHHHHHHHHHhhhhc
Q 030233          161 ISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++|+|++++|++|.+.+..
T Consensus       160 ~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          160 LTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             TTTBTHHHHHHHHHHHHCC
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999988754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=9e-39  Score=217.63  Aligned_cols=180  Identities=47%  Similarity=0.893  Sum_probs=157.2

Q ss_pred             CcchHHHHhh--hhCC-CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233            1 MGKLISRLAK--RFFP-QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus         1 ~~~~~~~~~~--~~~~-~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      ||.+++++.+  +++. ++.++|+++|++|+|||||+++++++.+..+.||.+.....+...+..+.+|||||++.+...
T Consensus         3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~   82 (189)
T 2x77_A            3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY   82 (189)
T ss_dssp             ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred             hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence            7777777777  5666 789999999999999999999999988888888999888888889999999999999998888


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      +..+++.+|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.+........++++++
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK  162 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence            88899999999999999999999999999998887655578999999999999887777788877765555566789999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhcc
Q 030233          158 CSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +||++|+|++++|+++.+.+.++
T Consensus       163 ~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          163 SSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             ccCCCccCHHHHHHHHHHHHHhc
Confidence            99999999999999999988765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=8.8e-38  Score=212.18  Aligned_cols=178  Identities=44%  Similarity=0.853  Sum_probs=147.5

Q ss_pred             CcchHHHHhhhhCC-CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHH
Q 030233            1 MGKLISRLAKRFFP-QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   79 (181)
                      || +++ +.++++. .+.++|+++|++|+|||||+++++++....+.||.+.....+.+.+..+.+|||||++.+...+.
T Consensus         3 mg-~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~   80 (186)
T 1ksh_A            3 MG-LLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR   80 (186)
T ss_dssp             ----------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred             cc-hhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence            66 455 4455555 78899999999999999999999998877778899988888888999999999999999999999


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .+++.+|++++|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++|
T Consensus        81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1ksh_A           81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS  160 (186)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence            99999999999999999999999999999888765556899999999999988777777777766544455678999999


Q ss_pred             ccCCCCHHHHHHHHHhhhhcc
Q 030233          160 AISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (181)
                      |++|+|++++|+++.+.+.++
T Consensus       161 a~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          161 AVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999988754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=4.7e-38  Score=214.73  Aligned_cols=176  Identities=62%  Similarity=1.059  Sum_probs=151.6

Q ss_pred             HHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccC
Q 030233            5 ISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRD   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~   84 (181)
                      +..+++++++++.++|+++|++|+|||||+++++++.+....||.+.....+...+..+.+|||||++.+...+..+++.
T Consensus        17 ~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   96 (192)
T 2b6h_A           17 RGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQN   96 (192)
T ss_dssp             CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHT
T ss_pred             HHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence            34466777888999999999999999999999999888878889888888888899999999999999999999999999


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      +|++++|+|+++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++||++|.
T Consensus        97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~  176 (192)
T 2b6h_A           97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGT  176 (192)
T ss_dssp             CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence            99999999999999999999999998876555689999999999998877778888877665555677899999999999


Q ss_pred             CHHHHHHHHHhhhhcc
Q 030233          165 GLYEGLDWLSNNISVK  180 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~~  180 (181)
                      |++++|++|.+.+.++
T Consensus       177 gi~~l~~~l~~~i~~q  192 (192)
T 2b6h_A          177 GLYDGLDWLSHELSKR  192 (192)
T ss_dssp             THHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999988764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=4.5e-37  Score=208.02  Aligned_cols=167  Identities=43%  Similarity=0.843  Sum_probs=146.6

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      |.+.++|+++|++|+|||||++++++..+..+.+|.+++...+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d   92 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID   92 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence            46789999999999999999999999988888899998888888889999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL  173 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  173 (181)
                      +++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|+|++++|+++
T Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  172 (181)
T 1fzq_A           93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV  172 (181)
T ss_dssp             TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence            99999999999999888776445689999999999998777777777766554445567799999999999999999999


Q ss_pred             Hhhhhcc
Q 030233          174 SNNISVK  180 (181)
Q Consensus       174 ~~~~~~~  180 (181)
                      .+.+.++
T Consensus       173 ~~~~~~~  179 (181)
T 1fzq_A          173 CKNVNAK  179 (181)
T ss_dssp             HHTC---
T ss_pred             HHHHHhc
Confidence            9988664

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=6.4e-37  Score=203.82  Aligned_cols=164  Identities=70%  Similarity=1.133  Sum_probs=144.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR   97 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   97 (181)
                      ++|+++|++|+|||||+++++++.+....||.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   80 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence            58999999999999999999998887788898888778888899999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233           98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      +++.....|+..++......+.|+++|+||+|+.+....+++...+....+...+++++++||++|.|++++|+++.+.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A           81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            99999999999888765556899999999999988777777877776555556678899999999999999999999998


Q ss_pred             hccC
Q 030233          178 SVKN  181 (181)
Q Consensus       178 ~~~~  181 (181)
                      .+++
T Consensus       161 ~~~k  164 (164)
T 1r8s_A          161 RNQK  164 (164)
T ss_dssp             ----
T ss_pred             hhcC
Confidence            7763

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=1.7e-36  Score=202.94  Aligned_cols=167  Identities=47%  Similarity=0.866  Sum_probs=149.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      .+.++|+++|++|+|||||+++++++.+..+.+|.+.....+.+....+.+|||||++.+...+..+++.+|++++|+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   84 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS   84 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence            45799999999999999999999999888888999988888888999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      ++++++.....++..++......+.|+++|+||+|+.+....+++...+....+...+++++++||++|+|++++|+++.
T Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (171)
T 1upt_A           85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV  164 (171)
T ss_dssp             TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence            99999999999999888765556899999999999988777777877776555566778999999999999999999999


Q ss_pred             hhhhccC
Q 030233          175 NNISVKN  181 (181)
Q Consensus       175 ~~~~~~~  181 (181)
                      +.+.+++
T Consensus       165 ~~i~~~q  171 (171)
T 1upt_A          165 ETLKSRQ  171 (171)
T ss_dssp             HHHHTCC
T ss_pred             HHHhhcC
Confidence            9988763

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=9.7e-39  Score=221.19  Aligned_cols=162  Identities=19%  Similarity=0.321  Sum_probs=122.9

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTL   86 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d   86 (181)
                      ..|++++||+++|++|||||||+++++.+.+. .+.||++.+...  +..  ....+.+|||+|+++|..+++.+++.++
T Consensus         8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~   87 (216)
T 4dkx_A            8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA   87 (216)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred             CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence            34778999999999999999999999998864 457888866544  333  4478899999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      ++++|||+++++||..+..|+..+..... +++|+++|+||+|+.+.  .+.++.....     ...++.|++|||++|+
T Consensus        88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a-----~~~~~~~~e~SAktg~  161 (216)
T 4dkx_A           88 AAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKA-----KELNVMFIETSAKAGY  161 (216)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTB
T ss_pred             EEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHH-----HHhCCeeEEEeCCCCc
Confidence            99999999999999999999998866432 67999999999998653  3334333322     2345689999999999


Q ss_pred             CHHHHHHHHHhhhhc
Q 030233          165 GLYEGLDWLSNNISV  179 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (181)
                      ||+++|+.|++.+.+
T Consensus       162 nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          162 NVKQLFRRVAAALPG  176 (216)
T ss_dssp             SHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999988754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=2.9e-36  Score=205.55  Aligned_cols=165  Identities=36%  Similarity=0.606  Sum_probs=141.6

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +..+.++|+++|++|+|||||+++++++.+..+.+|.+.+...+.+.+..+.+|||||++.++..+..+++.+|++++|+
T Consensus        19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   98 (190)
T 1m2o_B           19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV   98 (190)
T ss_dssp             -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence            45677899999999999999999999998888888999888888889999999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc-------cCCccEEEEEeeccCCCC
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS-------LGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~  165 (181)
                      |++++++++....|+..++......+.|+++|+||+|+.+..+.+++.+......       .....+++++|||++|+|
T Consensus        99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  178 (190)
T 1m2o_B           99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG  178 (190)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred             ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence            9999999999999999987765456899999999999988667777777665432       233567899999999999


Q ss_pred             HHHHHHHHHhhh
Q 030233          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 i~~l~~~i~~~~  177 (181)
                      ++++|++|.+.+
T Consensus       179 i~~l~~~l~~~l  190 (190)
T 1m2o_B          179 YLEAFQWLSQYI  190 (190)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhC
Confidence            999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=8.6e-36  Score=202.84  Aligned_cols=168  Identities=31%  Similarity=0.597  Sum_probs=146.4

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ..++.++|+++|++|+|||||+++++++.+. .+.+|.+.+...+......+.+|||||++.+...+..+++.+|++++|
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   97 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   97 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence            4456899999999999999999999988865 567888988888888999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +|+++++++.....|+..++......+.|+++|+||+|+.+..+.+++.+.+........+++++++||++|.|++++|+
T Consensus        98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~  177 (188)
T 1zd9_A           98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ  177 (188)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence            99999999999999999887764446899999999999987767777777766555555678899999999999999999


Q ss_pred             HHHhhhhcc
Q 030233          172 WLSNNISVK  180 (181)
Q Consensus       172 ~i~~~~~~~  180 (181)
                      +|.+.+.++
T Consensus       178 ~l~~~~~~~  186 (188)
T 1zd9_A          178 WLIQHSKSR  186 (188)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhh
Confidence            999988765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=4.1e-36  Score=206.02  Aligned_cols=165  Identities=30%  Similarity=0.604  Sum_probs=135.3

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +..+.++|+++|++|+|||||+++++++.+..+.+|.+.+...+.+.+..+.+|||||++.++..+..+++.+|++++|+
T Consensus        21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  100 (198)
T 1f6b_A           21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV  100 (198)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence            55678999999999999999999999988888888888888888888899999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc---------c---CCccEEEEEeec
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS---------L---GQRRWSIQSCSA  160 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa  160 (181)
                      |+++++++.....|+..+++.....+.|+++|+||+|+.+..+.+++........         .   ....+++++|||
T Consensus       101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  180 (198)
T 1f6b_A          101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV  180 (198)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence            9999999999999999988765556899999999999987667777776654321         1   125678999999


Q ss_pred             cCCCCHHHHHHHHHhhh
Q 030233          161 ISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~  177 (181)
                      ++|+|++++|++|.+.+
T Consensus       181 ~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          181 LKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999999998875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=6.9e-36  Score=202.12  Aligned_cols=164  Identities=45%  Similarity=0.837  Sum_probs=144.2

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      +.+.++|+++|++|+|||||+++++++.+..+.+|.+.+...+.+.+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   97 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD   97 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            45679999999999999999999999998888889998888888899999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL  173 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  173 (181)
                      +++++++.....|+..++......+.|+++|+||+|+.+....+++.+.+........+++++++||++|+|++++|++|
T Consensus        98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  177 (181)
T 2h17_A           98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  177 (181)
T ss_dssp             TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence            99999999999999988776444689999999999998877778888777655555667899999999999999999999


Q ss_pred             Hhhh
Q 030233          174 SNNI  177 (181)
Q Consensus       174 ~~~~  177 (181)
                      .+.+
T Consensus       178 ~~~l  181 (181)
T 2h17_A          178 MSRL  181 (181)
T ss_dssp             HTC-
T ss_pred             HhhC
Confidence            8753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=1.3e-35  Score=203.42  Aligned_cols=168  Identities=35%  Similarity=0.651  Sum_probs=143.4

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCccc--ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT--TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .+...++|+++|++|+|||||+++++++.+..  +.+|.+.....+......+.+|||||++.+...+..+++.+|++|+
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   92 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF   92 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence            34567899999999999999999999998654  4889998888888899999999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCC-------CCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-CCccEEEEEeeccC
Q 030233           91 VVDSSDRERISEARNELHQILSDNEL-------SNAALLVFANKQDLPNVMPTAEVADKLELYSL-GQRRWSIQSCSAIS  162 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~  162 (181)
                      |||+++++++.....|+..++.....       .+.|+++|+||+|+......+++...+..... ...+++++++||++
T Consensus        93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  172 (199)
T 4bas_A           93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK  172 (199)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred             EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence            99999999999999999988765221       37999999999999887777888777765433 45678999999999


Q ss_pred             CCCHHHHHHHHHhhhhcc
Q 030233          163 GQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (181)
                      |+|++++|++|.+.+.++
T Consensus       173 g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          173 GTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHH
Confidence            999999999999987653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.9e-35  Score=199.33  Aligned_cols=167  Identities=38%  Similarity=0.701  Sum_probs=142.0

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC--cccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ..+.++|+++|++|+|||||++++++..  ...+.+|.+.....+.+.+..+.+|||||++.+...+..+++.+|++++|
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   97 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV   97 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            4567999999999999999999999887  45567888888888888889999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCC--CCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNEL--SNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|+++++++.....|+..++.....  .+.|+++|+||+|+.+....+++............+++++++||++|+|++++
T Consensus        98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  177 (190)
T 2h57_A           98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG  177 (190)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence            9999999999999999888776443  57999999999999887777777776654444445789999999999999999


Q ss_pred             HHHHHhhhhcc
Q 030233          170 LDWLSNNISVK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |++|.+.+.+.
T Consensus       178 ~~~l~~~i~~~  188 (190)
T 2h57_A          178 VDWLQDQIQTV  188 (190)
T ss_dssp             HHHHHHHC---
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.6e-35  Score=213.23  Aligned_cols=168  Identities=68%  Similarity=1.101  Sum_probs=146.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      ..+.++|+++|++|+|||||++++.++.+....||.+.....+...+..+.+|||||++.+...+..+++.+|++|+|||
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D  241 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD  241 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            34668999999999999999999999988777789998888888999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWL  173 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  173 (181)
                      +++++++.....++..++......++|+++|+||+|+.+....+++...+........+++++++||++|+|++++|++|
T Consensus       242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l  321 (329)
T 3o47_A          242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL  321 (329)
T ss_dssp             TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence            99999999999999998887666789999999999999888888888888777667788899999999999999999999


Q ss_pred             HhhhhccC
Q 030233          174 SNNISVKN  181 (181)
Q Consensus       174 ~~~~~~~~  181 (181)
                      .+.+.+++
T Consensus       322 ~~~l~~~k  329 (329)
T 3o47_A          322 SNQLRNQK  329 (329)
T ss_dssp             HHHHTC--
T ss_pred             HHHHHhcC
Confidence            99988764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=2.5e-34  Score=191.62  Aligned_cols=159  Identities=16%  Similarity=0.136  Sum_probs=107.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVD   93 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d   93 (181)
                      .++|+++|++|+|||||++++++.......++.+.+... +..  ....+.+||+||++.+...+..+++.+|++++|||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   81 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence            589999999999999999999988776666666655542 333  44678999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           94 SSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ++++++++....|+..+.......+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|+|++++|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~  156 (166)
T 3q72_A           82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA-----VVFDCKFIETSAALHHNVQALFE  156 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH-----HHTTCEEEECBGGGTBSHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHH
Confidence            99999999999999998876555789999999999997532  233322221     22345899999999999999999


Q ss_pred             HHHhhhhcc
Q 030233          172 WLSNNISVK  180 (181)
Q Consensus       172 ~i~~~~~~~  180 (181)
                      ++.+.+.++
T Consensus       157 ~l~~~~~~~  165 (166)
T 3q72_A          157 GVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999988765

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-33  Score=188.56  Aligned_cols=159  Identities=21%  Similarity=0.335  Sum_probs=127.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +.++|+++|++|+|||||+++++++.+. .+.++.+.+..  .+...  ...+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            4689999999999999999999988854 45677775543  34443  3589999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-----CHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-----PTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      |+|++++.++.....|+..+.... ..+.|+++|+||+|+....     ..++.....     ...+++++++||++|.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g  155 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN  155 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred             EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence            999999999999999888876543 2579999999999986531     222222211     22345899999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 030233          166 LYEGLDWLSNNISVK  180 (181)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (181)
                      ++++|++|.+.+.++
T Consensus       156 i~~l~~~l~~~i~~k  170 (170)
T 1ek0_A          156 VNDVFLGIGEKIPLK  170 (170)
T ss_dssp             HHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999988653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=188.74  Aligned_cols=160  Identities=14%  Similarity=0.109  Sum_probs=117.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE--EEEECC--eEEEEEEcCCChh--hHHHHHhhccCCCEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNK--IRALWRHYFRDTLGL   88 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~--~~~~~~~~~~~~d~i   88 (181)
                      ++.++|+++|++|+|||||++++++..+....++.+.+..  .+.+.+  ..+.+|||||++.  +......+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            4578999999999999999999999887666666665543  344444  4789999999887  566778888999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ++|||+++++++.....|+..+.......+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|+|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi  156 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA-----VVFDCKFIETSATLQHNV  156 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHHTSEEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH-----HHcCCeEEEEecCCCCCH
Confidence            9999999999999999998888765444689999999999997532  233322211     123457999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 030233          167 YEGLDWLSNNISV  179 (181)
Q Consensus       167 ~~l~~~i~~~~~~  179 (181)
                      +++|++|.+.+.+
T Consensus       157 ~~l~~~l~~~~~~  169 (175)
T 2nzj_A          157 AELFEGVVRQLRL  169 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=4.3e-32  Score=184.02  Aligned_cols=160  Identities=15%  Similarity=0.202  Sum_probs=124.9

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      ..+++.++|+++|++|+|||||+++++++.+.. +.+|.+.....+.+.+  ..+.+|||+|++.+.     +++.+|++
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            345678999999999999999999999988654 4555444444555555  677889999998877     67789999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN----VMPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      ++|||++++++++.+..|+..+.......+.|+++|+||+|+..    ....++.......    ...+.|+++||++|+
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGL  165 (184)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTB
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCC
Confidence            99999999999999999999887765446799999999999842    2333333333211    123589999999999


Q ss_pred             CHHHHHHHHHhhhhcc
Q 030233          165 GLYEGLDWLSNNISVK  180 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~~  180 (181)
                      |++++|+++.+.+.++
T Consensus       166 gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          166 NVERVFQDVAQKVVAL  181 (184)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999987654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.6e-32  Score=184.70  Aligned_cols=162  Identities=20%  Similarity=0.206  Sum_probs=128.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      +.+.++|+++|++|+|||||+++++++.+. .+.++.+.... .....+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            346799999999999999999999988754 44566654432 233344  45677999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeecc-CCCCH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAI-SGQGL  166 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i  166 (181)
                      +|||+++++++..+..|+..+.......+.|+++|+||+|+.+  ....++......     ..+++++++||+ +|+|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~~v  169 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT-----KYNIPYIETSAKDPPLNV  169 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH-----HHTCCEEEEBCSSSCBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH-----HhCCeEEEeccCCCCCCH
Confidence            9999999999999999988886644446899999999999865  233333333221     223579999999 99999


Q ss_pred             HHHHHHHHhhhhcc
Q 030233          167 YEGLDWLSNNISVK  180 (181)
Q Consensus       167 ~~l~~~i~~~~~~~  180 (181)
                      +++|++|.+.+.++
T Consensus       170 ~~l~~~l~~~i~~q  183 (183)
T 3kkq_A          170 DKTFHDLVRVIRQQ  183 (183)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.8e-32  Score=183.83  Aligned_cols=160  Identities=19%  Similarity=0.299  Sum_probs=129.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ++.++|+++|++|+|||||+++++++.+. .+.++.+.+......    ....+.+|||||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            46799999999999999999999998854 567788766554333    4578999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+  ....++..+..     ...+++++++||++|.|++
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAINIE  174 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBSHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence            9999999999999988888775542 35799999999999864  23344444433     2234689999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|++|.+.+.+.
T Consensus       175 ~l~~~l~~~i~~~  187 (192)
T 2fg5_A          175 ELFQGISRQIPPL  187 (192)
T ss_dssp             HHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=6e-32  Score=180.47  Aligned_cols=160  Identities=22%  Similarity=0.350  Sum_probs=128.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      +++.++|+++|++|+|||||+++++++.+.. +.++.+.+...  +...  ...+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            4567999999999999999999999887543 45666655433  3333  56899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ++|+|+++++++.....|+..+.... .++.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi  156 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNV  156 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCH
Confidence            99999999999999998888876542 257999999999998642  2233333322     224468999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 030233          167 YEGLDWLSNNISV  179 (181)
Q Consensus       167 ~~l~~~i~~~~~~  179 (181)
                      +++|++|.+.+.+
T Consensus       157 ~~l~~~i~~~~~~  169 (170)
T 1r2q_A          157 NEIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=2.2e-32  Score=182.20  Aligned_cols=160  Identities=19%  Similarity=0.247  Sum_probs=126.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ++.++|+++|++|+|||||+++++++.+. .+.+|.+..... +..  ....+.+|||||++.+...+..+++.+|++++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            35789999999999999999999988754 455666654432 222  35689999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |+|++++++++....|+..+.......+.|+++|+||+|+.+..  ..++......    ...+.+++++||++|.|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~  156 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHH
Confidence            99999999999988888877664334689999999999996532  2333333221    11256899999999999999


Q ss_pred             HHHHHHhhhh
Q 030233          169 GLDWLSNNIS  178 (181)
Q Consensus       169 l~~~i~~~~~  178 (181)
                      +|++|.+.+.
T Consensus       157 l~~~l~~~i~  166 (167)
T 1c1y_A          157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998774

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=9.1e-32  Score=184.80  Aligned_cols=160  Identities=23%  Similarity=0.365  Sum_probs=123.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCcccee--EEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFN--VEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||+++++++.+. .+.+|.+.+  ...+.+.+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            34689999999999999999999988864 455666644  34455554  68999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccE-EEEEeeccCCCCH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRW-SIQSCSAISGQGL  166 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  166 (181)
                      +|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+  ....++......     ..++ +++++||++|+|+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAE-----HYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCSEEEECBTTTTBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHH-----HcCCCEEEEEeCCCCCCH
Confidence            9999999999999998888876543 35799999999999965  233444443321     2234 7999999999999


Q ss_pred             HHHHHHHHhhhhcc
Q 030233          167 YEGLDWLSNNISVK  180 (181)
Q Consensus       167 ~~l~~~i~~~~~~~  180 (181)
                      +++|++|.+.+.++
T Consensus       181 ~~l~~~l~~~i~~~  194 (201)
T 2hup_A          181 EEAFLRVATELIMR  194 (201)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=192.41  Aligned_cols=165  Identities=15%  Similarity=0.126  Sum_probs=125.4

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEE---EECCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAV---EYKNKSFCVWDVGGQNKIRALWRHYFRDTL   86 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d   86 (181)
                      .+...+.++|+++|++|+|||||+++++++.+.. +.+|.+......   ......+.+|||||++.+...+..+++.+|
T Consensus        18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            3444678999999999999999999999988543 456666444222   225678999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      ++++|||+++++++..+..|+..+.......++|+++|+||+|+.+..  ..++.....     ...+++++++||++|.
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~  172 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA-----ESWGATFMESSARENQ  172 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECCTTCHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH-----HHhCCeEEEEeCCCCC
Confidence            999999999999999999999998876555689999999999986432  223322222     2234589999999999


Q ss_pred             CHHHHHHHHHhhhhcc
Q 030233          165 GLYEGLDWLSNNISVK  180 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~~  180 (181)
                      |++++|++|.+.+.++
T Consensus       173 ~v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          173 LTQGIFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999987654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.5e-31  Score=180.54  Aligned_cols=162  Identities=17%  Similarity=0.282  Sum_probs=127.5

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .++..++|+++|++|+|||||++++++..+.. ..++.+.+..  .+...  ...+.+|||||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34567999999999999999999999887544 3456664443  34443  4689999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+..  ..++.....     ...+++++++||++|+|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g  161 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATN  161 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCC
Confidence            999999999999999999988876643 2589999999999996532  333443332     12345799999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 030233          166 LYEGLDWLSNNISVK  180 (181)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (181)
                      ++++|++|.+.+.++
T Consensus       162 i~~l~~~l~~~~~~~  176 (181)
T 2efe_B          162 VKEIFYEIARRLPRV  176 (181)
T ss_dssp             HHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999987654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=5.7e-32  Score=180.19  Aligned_cols=161  Identities=23%  Similarity=0.280  Sum_probs=125.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ++.++|+++|++|+|||||+++++++.+. .+.++.+.... .+...+  ..+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            45789999999999999999999988754 34555554443 234443  589999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |+|+++++++.....|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  156 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDK  156 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHH
Confidence            9999999999999998888876544457999999999998652  3333333332     22345799999999999999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|+++.+.+.++
T Consensus       157 l~~~l~~~i~~~  168 (168)
T 1u8z_A          157 VFFDLMREIRAR  168 (168)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999988653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.7e-32  Score=184.24  Aligned_cols=161  Identities=15%  Similarity=0.144  Sum_probs=127.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .+.++|+++|++|+|||||+++++++.+ ..+.++.+.... .+...+  ..+.+|||||++.+...+..+++.+|++++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   83 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   83 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence            4679999999999999999999997774 445667665543 233444  678999999999998888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |+|++++++++.+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~  158 (181)
T 3t5g_A           84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD  158 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence            9999999999999999988876555568999999999998643  2333333322     22345799999999999999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|+++.+.+.++
T Consensus       159 l~~~l~~~~~~~  170 (181)
T 3t5g_A          159 VFRRIILEAEKM  170 (181)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=3.4e-32  Score=185.99  Aligned_cols=161  Identities=24%  Similarity=0.319  Sum_probs=126.8

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccc-----------cCccceeEEEEEE-----CCeEEEEEEcCCChhhHH
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----------TPTIGFNVEAVEY-----KNKSFCVWDVGGQNKIRA   76 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----------~~~~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~   76 (181)
                      .+...++|+++|++|+|||||++.+.+.....+           .+|.+.+......     ....+.+|||||++.+..
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            345679999999999999999987776554432           3355444433221     346899999999999999


Q ss_pred             HHHhhccCCCEEEEEEECC------CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCC
Q 030233           77 LWRHYFRDTLGLTFVVDSS------DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQ  150 (181)
Q Consensus        77 ~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~  150 (181)
                      .+..+++.+|++++|||++      +.+++..+..|+..+.  ....+.|+++|+||+|+.+....+++.+....     
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----  162 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-----  162 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----
Confidence            9999999999999999999      5567777777777762  23368999999999999887777777766542     


Q ss_pred             ccE-EEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          151 RRW-SIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       151 ~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      .++ +++++||++|+|++++|++|.+.+.++
T Consensus       163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          163 EGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            344 799999999999999999999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.7e-31  Score=179.87  Aligned_cols=158  Identities=13%  Similarity=0.133  Sum_probs=121.0

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ..++.++|+++|++|+|||||+++++++.+..+.+|.+.... .+...+  ..+.+|||||++.     ..+++.+|+++
T Consensus         3 ~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            345789999999999999999999999987777787775533 344443  6789999999887     35677899999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHc--CCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           90 FVVDSSDRERISEARNELHQILS--DNELSNAALLVFANKQDLPN----VMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~piilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      +|||+++++++..+..|+..+..  ....++.|+++|+||+|+.+    ....++......    ...+++++++||++|
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~  153 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYG  153 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEecccc
Confidence            99999999999999886544422  22235799999999999842    233333333221    113568999999999


Q ss_pred             CCHHHHHHHHHhhhhc
Q 030233          164 QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (181)
                      +|++++|+++.+.+.+
T Consensus       154 ~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          154 LNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             BTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.3e-32  Score=183.76  Aligned_cols=161  Identities=20%  Similarity=0.331  Sum_probs=129.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||++++++..+. .+.++.+.+..  .+...  ...+.+|||||++.+...+..+++.+|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            35689999999999999999999998854 45666665544  33343  468999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++.....     ...+++++++||++|+|+++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  167 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC  167 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence            999999999999999998888765444689999999999995432 233333322     22345799999999999999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|++|.+.+.+.
T Consensus       168 l~~~l~~~~~~~  179 (195)
T 1x3s_A          168 AFEELVEKIIQT  179 (195)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhh
Confidence            999999987653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-31  Score=180.81  Aligned_cols=161  Identities=20%  Similarity=0.357  Sum_probs=120.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEEE--EEECC--eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVEA--VEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .++.++|+++|++|+|||||+++++++.+.  .+.++.+.+...  +...+  ..+.+|||||++.+...+..+++.+|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            456799999999999999999999998864  456677665543  34444  589999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g  160 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLN  160 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence            9999999999999998888887765422 579999999999997532  233333222     12345799999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 030233          166 LYEGLDWLSNNISVK  180 (181)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (181)
                      ++++|+++.+.+.++
T Consensus       161 i~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          161 VDLAFTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.7e-31  Score=181.97  Aligned_cols=160  Identities=24%  Similarity=0.395  Sum_probs=129.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE---EEEEC-----------CeEEEEEEcCCChhhHHHHH
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE---AVEYK-----------NKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~---~~~~~-----------~~~~~i~d~~g~~~~~~~~~   79 (181)
                      .+.++|+++|++|+|||||+++++++.+. ...+|.+.+..   .+...           ...+.+|||||++.+...+.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            45799999999999999999999988753 45677776554   33333           46899999999999999999


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEE
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      .+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.  ...++......     ..++++++
T Consensus        89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~  163 (195)
T 3bc1_A           89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE-----KYGIPYFE  163 (195)
T ss_dssp             HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEE
T ss_pred             HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCCEEE
Confidence            999999999999999999999999999888876544468999999999998652  23333333221     12347999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhc
Q 030233          158 CSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +||++|.|++++|++|.+.+.+
T Consensus       164 ~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          164 TSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.98  E-value=1.6e-31  Score=178.51  Aligned_cols=159  Identities=16%  Similarity=0.158  Sum_probs=115.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECC--eEEEEEEcCCChhhHH-HHHhhccCCCEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKN--KSFCVWDVGGQNKIRA-LWRHYFRDTLGLTF   90 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~i~d~~g~~~~~~-~~~~~~~~~d~ii~   90 (181)
                      .++|+++|++|+|||||++++++.....   ..++.......+...+  ..+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            4799999999999999999998766332   2223334444444544  6788999999998876 67777888999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||+++++++.....|+..+.......+.|+++|+||+|+.+  ....++.....     ...+++++++||++|+|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~  156 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRE  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHH
Confidence            999999999999999999887765445899999999999863  23333333322     22345899999999999999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|+++.+.+..+
T Consensus       157 l~~~l~~~i~~~  168 (169)
T 3q85_A          157 LFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988765

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.98  E-value=9.8e-32  Score=180.93  Aligned_cols=162  Identities=19%  Similarity=0.274  Sum_probs=126.8

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccc--eeEEEEEECC---eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIG--FNVEAVEYKN---KSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~--~~~~~~~~~~---~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      +++.++|+++|++|+|||||+++++++.+. .+.+|.+  +....+.+.+   ..+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            456899999999999999999999988754 4456666  3344555654   799999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      +++|+|+++++++..+..|+..+.....  ...+|+++|+||+|+.+.  ...++.....     ...+++++++||++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCC
Confidence            9999999999999988888777654210  123458999999998652  2233333322     123458999999999


Q ss_pred             CCHHHHHHHHHhhhhcc
Q 030233          164 QGLYEGLDWLSNNISVK  180 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~~  180 (181)
                      +|++++|++|.+.+.+.
T Consensus       158 ~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             TTHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999988765

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.98  E-value=8.9e-33  Score=186.37  Aligned_cols=163  Identities=21%  Similarity=0.277  Sum_probs=129.2

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      .+.+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...+  ..+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            3457899999999999999999999988753 44566665443 344444  5789999999999998899999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ++|+|+++++++.....|+..++......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv  159 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVAYFEASAKLRLNV  159 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCH
Confidence            999999999999999999888865544468999999999998653  2223332221     223558999999999999


Q ss_pred             HHHHHHHHhhhhcc
Q 030233          167 YEGLDWLSNNISVK  180 (181)
Q Consensus       167 ~~l~~~i~~~~~~~  180 (181)
                      +++|++|.+.+.++
T Consensus       160 ~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          160 DEAFEQLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.98  E-value=2.8e-31  Score=178.72  Aligned_cols=160  Identities=21%  Similarity=0.307  Sum_probs=126.8

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      ..+.++|+++|++|+|||||+++++++.+. .+.++.+.+..  .+...  ...+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            345799999999999999999999998854 34566665433  34443  46899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi  165 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENV  165 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTH
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence            99999999999999888887775532 257999999999999642  2333433332     123458999999999999


Q ss_pred             HHHHHHHHhhhhc
Q 030233          167 YEGLDWLSNNISV  179 (181)
Q Consensus       167 ~~l~~~i~~~~~~  179 (181)
                      +++|+++.+.+.+
T Consensus       166 ~~l~~~l~~~i~~  178 (179)
T 1z0f_A          166 EDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=4.8e-32  Score=185.39  Aligned_cols=168  Identities=19%  Similarity=0.233  Sum_probs=126.0

Q ss_pred             HHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEEC--CeEEEEEEcCCChhhHHHHHhhc
Q 030233            7 RLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEYK--NKSFCVWDVGGQNKIRALWRHYF   82 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~   82 (181)
                      ++++++.+.+.++|+++|++|+|||||+++++++.+. .+.+|.+..... +...  ...+.+|||||++. ...+..++
T Consensus        18 ~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~   96 (196)
T 2atv_A           18 LYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHM   96 (196)
T ss_dssp             ---------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHH
T ss_pred             cchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhh
Confidence            3455566678899999999999999999999998754 445666654432 3443  46799999999988 77788899


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeec
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +.+|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||
T Consensus        97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa  171 (196)
T 2atv_A           97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSA  171 (196)
T ss_dssp             HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCT
T ss_pred             ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECC
Confidence            999999999999999999999888887766433468999999999998652  2333333222     123458999999


Q ss_pred             cCCC-CHHHHHHHHHhhhhcc
Q 030233          161 ISGQ-GLYEGLDWLSNNISVK  180 (181)
Q Consensus       161 ~~~~-~i~~l~~~i~~~~~~~  180 (181)
                      ++|+ |++++|++|.+.+.++
T Consensus       172 ~~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          172 CTGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             TTCTTCHHHHHHHHHHHHHHH
T ss_pred             CcCCcCHHHHHHHHHHHHHhh
Confidence            9999 9999999999987653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.98  E-value=2.3e-31  Score=178.93  Aligned_cols=162  Identities=15%  Similarity=0.268  Sum_probs=126.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||+++++++.+. ...++.+.+..  .+...+  ..+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   84 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   84 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence            45789999999999999999999988754 45667765543  344444  58999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           90 FVVDSSDRERISEARNELHQILSD---NELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +|+|++++.++.....|+..+...   ....+.|+++|+||+|+... ...++......    ....++++++||++|+|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~g  160 (177)
T 1wms_A           85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATN  160 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCCC
Confidence            999999999999888888776543   12257899999999998632 33444443322    12345799999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 030233          166 LYEGLDWLSNNISVK  180 (181)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (181)
                      ++++|+++.+.+.++
T Consensus       161 i~~l~~~l~~~~~~~  175 (177)
T 1wms_A          161 VAAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=1.5e-31  Score=183.72  Aligned_cols=158  Identities=19%  Similarity=0.262  Sum_probs=126.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +.++|+++|++|+|||||+++++++.+. .+.+|.+.+..  .+.+.+  ..+.+|||||++.+...+..+++.+|++++
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL  104 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            4689999999999999999999988754 45667665543  344444  589999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|+++
T Consensus       105 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A          105 TYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence            999999999999988888775532 257999999999998642  2233333222     12345799999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|+++.+.+.+
T Consensus       179 l~~~l~~~i~~  189 (201)
T 2ew1_A          179 LFLDLACRLIS  189 (201)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.98  E-value=3.1e-32  Score=181.99  Aligned_cols=159  Identities=23%  Similarity=0.336  Sum_probs=127.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ++.++|+++|++|+|||||+++++++.+ ..+.++.+.+...  +...  ...+.+|||||.+.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4578999999999999999999999885 4456777765443  3343  478999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|++++.++.....|+..+... ..+..|+++|+||+|+.+..  ..++.....     ...+.+++++||++|.|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  157 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ  157 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence            999999999999988888777553 23689999999999996532  233332222     1234589999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~i~~~i~~  169 (170)
T 1z0j_A          158 ELFIEISRRIPS  169 (170)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhc
Confidence            999999988753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.98  E-value=7.2e-32  Score=183.17  Aligned_cols=160  Identities=22%  Similarity=0.283  Sum_probs=123.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE-EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV-EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .++++|+++|++|+|||||+++++++.+.. +.++.+... ..+...+  ..+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            457899999999999999999999887543 444544332 2333444  457889999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      |+|+++++++.....|+..+.......+.|+++|+||+|+.+... .+......     ...+++++++||++|+|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l  156 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA-----RSYGIPFIETSAKTRQGVDDA  156 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999988887755556899999999999975432 33332222     122347999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+++.+.+.+
T Consensus       157 ~~~l~~~~~~  166 (189)
T 4dsu_A          157 FYTLVREIRK  166 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.98  E-value=1.9e-31  Score=183.56  Aligned_cols=164  Identities=23%  Similarity=0.256  Sum_probs=129.8

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE-EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCC
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV-EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTL   86 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d   86 (181)
                      ...+++.++|+++|++|+|||||++++.++.+. .+.+|.+... ..+...+  ..+.+|||||++.+...+..+++.+|
T Consensus         8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   87 (206)
T 2bov_A            8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   87 (206)
T ss_dssp             ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence            344567899999999999999999999988753 4456665443 3344444  58999999999999999999999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      ++++|||+++++++.....|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~  162 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRA  162 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCC
Confidence            99999999999999999999888876544458999999999998653  3333433332     1234579999999999


Q ss_pred             CHHHHHHHHHhhhhc
Q 030233          165 GLYEGLDWLSNNISV  179 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (181)
                      |++++|++|.+.+.+
T Consensus       163 gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          163 NVDKVFFDLMREIRA  177 (206)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.98  E-value=8.2e-33  Score=184.10  Aligned_cols=160  Identities=16%  Similarity=0.232  Sum_probs=125.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCcccee-EEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFN-VEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~-~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +++++|+++|++|+|||||+++++++.+. .+.++.+.. ...+...+  ..+.+|||||++.+...+..+++.+|++++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            35789999999999999999999988754 344555433 23344444  459999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |+|++++.+++....|+..+.......+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|+|+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  155 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-----EEWGCPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSCEEEECTTCHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH-----HHhCCCEEEecCCCCcCHHH
Confidence            99999999999999998888765444689999999999986432  223222221     11234799999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|+++.+.+.+
T Consensus       156 l~~~l~~~~~~  166 (167)
T 1kao_A          156 LFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.9e-32  Score=187.58  Aligned_cols=160  Identities=13%  Similarity=0.143  Sum_probs=119.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC--cccccCccceeE--EEEEECC--eEEEEEEcCCChh-hHHHHHhhccCCCE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNK-IRALWRHYFRDTLG   87 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~-~~~~~~~~~~~~d~   87 (181)
                      ...++|+++|++|+|||||++++++..  +....++++.+.  ..+.+.+  ..+.+|||+|.+. +..+...+++.+++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            356899999999999999999999754  333334454433  3344544  4678999999877 55567777889999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +++|||++++++|..+..|+..+.......++|+++|+||+|+.+.  ...++... +    +...++++++|||++|+|
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~-~----a~~~~~~~~e~SAk~g~~  189 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA-C----AVVFDCKFIETSAAVQHN  189 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHH-H----HHHcCCEEEEEeCCCCCC
Confidence            9999999999999999998887765433357999999999998642  22222211 1    112345799999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 030233          166 LYEGLDWLSNNISV  179 (181)
Q Consensus       166 i~~l~~~i~~~~~~  179 (181)
                      ++++|+++.+.+..
T Consensus       190 v~elf~~l~~~i~~  203 (211)
T 2g3y_A          190 VKELFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.98  E-value=1.2e-31  Score=179.15  Aligned_cols=159  Identities=21%  Similarity=0.294  Sum_probs=119.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||+++++++.+. ...++.+.+..  .+..  ....+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            45789999999999999999999988754 45566665544  3333  3458999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  157 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE  157 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence            9999999999999988887765432 247999999999998652  2333333322     1234589999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~~~~  169 (170)
T 1z08_A          158 ELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.98  E-value=2.1e-32  Score=186.12  Aligned_cols=162  Identities=20%  Similarity=0.323  Sum_probs=123.9

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhH-HHHHhhccCCC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIR-ALWRHYFRDTL   86 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~-~~~~~~~~~~d   86 (181)
                      ..++.++|+++|++|+|||||+++++++.+. ...++.+.+.  ..+...+  ..+.+|||||++.+. ..+..+++.+|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            3456799999999999999999999988754 3556666443  3444544  689999999999998 78889999999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCC-
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISG-  163 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-  163 (181)
                      ++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++| 
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~  170 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-----DTHSMPLFETSAKNPN  170 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEECCSSSGG
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH-----HHcCCEEEEEeCCcCC
Confidence            99999999999999999999888876544468999999999999653  2233332222     123447999999999 


Q ss_pred             --CCHHHHHHHHHhhhhc
Q 030233          164 --QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 --~~i~~l~~~i~~~~~~  179 (181)
                        +|++++|++|.+.+.+
T Consensus       171 ~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          171 DNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             GGSCHHHHHHHHC-----
T ss_pred             cccCHHHHHHHHHHHHhh
Confidence              9999999999988754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.98  E-value=8e-32  Score=184.75  Aligned_cols=164  Identities=20%  Similarity=0.325  Sum_probs=117.8

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCC
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDT   85 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~   85 (181)
                      ...+.+.++|+++|++|+|||||+++++++.+. .+.++.+.+.  ..+...+  ..+.+|||||++.+...+..+++.+
T Consensus        22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  101 (199)
T 2p5s_A           22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA  101 (199)
T ss_dssp             ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred             CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence            344567899999999999999999999998853 4556666443  3344443  6799999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC--------CCCHHHHHhhhCccccCCccEEEEE
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN--------VMPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      |++++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+        ....++.....     ...++++++
T Consensus       102 d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~  175 (199)
T 2p5s_A          102 DGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLA-----MTYGALFCE  175 (199)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHH-----HHHTCEEEE
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHH-----HHcCCeEEE
Confidence            9999999999999999988888776543 224789999999999852        12222222211     223458999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhcc
Q 030233          158 CSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +||++|+|++++|++|.+.+.++
T Consensus       176 ~SA~~g~gv~el~~~l~~~i~~~  198 (199)
T 2p5s_A          176 TSAKDGSNIVEAVLHLAREVKKR  198 (199)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHTC-
T ss_pred             eeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.98  E-value=2.8e-32  Score=186.52  Aligned_cols=161  Identities=17%  Similarity=0.176  Sum_probs=122.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccc--eeEEEEEECC--eEEEEEEcCCChhhHH-HHHhhccCCCEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIG--FNVEAVEYKN--KSFCVWDVGGQNKIRA-LWRHYFRDTLGL   88 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~-~~~~~~~~~d~i   88 (181)
                      ...++|+++|++|||||||++++++... ....++.+  .....+.+.+  ..+.+|||+|++.+.. ++..+++.+|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            4578999999999999999999976432 12223333  2333444443  5788999999988765 778888999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      ++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|+
T Consensus       101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-----HHhCCEEEEEcCCCCCCH
Confidence            999999999999999999988766433357999999999999653  2333333222     122357999999999999


Q ss_pred             HHHHHHHHhhhhcc
Q 030233          167 YEGLDWLSNNISVK  180 (181)
Q Consensus       167 ~~l~~~i~~~~~~~  180 (181)
                      +++|+++.+.+.++
T Consensus       176 ~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          176 RELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.98  E-value=1.5e-32  Score=184.92  Aligned_cols=162  Identities=20%  Similarity=0.340  Sum_probs=126.4

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .|++.++|+++|++|+|||||+++++++.+. .+.++.+.+.  ..+...+  ..+.+|||||++.+...+..+++.+|+
T Consensus        10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   89 (179)
T 2y8e_A           10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV   89 (179)
T ss_dssp             --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            3567899999999999999999999987754 3456665443  3344444  589999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~  163 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYN  163 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence            999999999999999988888776532 257999999999998643  2233333222     22345899999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 030233          166 LYEGLDWLSNNISVK  180 (181)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (181)
                      ++++|++|.+.+.++
T Consensus       164 i~~l~~~l~~~~~~~  178 (179)
T 2y8e_A          164 VKQLFRRVAAALPGM  178 (179)
T ss_dssp             HHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.98  E-value=7.3e-32  Score=182.44  Aligned_cols=158  Identities=21%  Similarity=0.370  Sum_probs=100.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ..++|+++|++|+|||||+++++++.+. .+.++.+.+..  .+.+.+  ..+.+|||||++.+...+..+++.+|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   86 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence            4689999999999999999999987754 44566664443  455555  789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|+++
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  160 (183)
T 2fu5_C           87 VYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVEN  160 (183)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHH
Confidence            999999999999998888776532 257999999999999753  2333333322     22345899999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|++|.+.+.+
T Consensus       161 l~~~l~~~i~~  171 (183)
T 2fu5_C          161 AFFTLARDIKA  171 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.98  E-value=3.4e-31  Score=179.50  Aligned_cols=159  Identities=22%  Similarity=0.343  Sum_probs=126.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||+++++++.+. .+.++.+.+.  ..+...+  ..+.+|||||++.+...+..+++.+|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999988754 4456666443  3344444  68999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|++
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  161 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE  161 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence            99999999999999888877654322 57999999999998642  2333333322     2234689999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       162 ~l~~~l~~~~~~  173 (186)
T 2bme_A          162 EAFVQCARKILN  173 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.98  E-value=4.8e-32  Score=185.18  Aligned_cols=160  Identities=21%  Similarity=0.341  Sum_probs=127.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...++|+++|++|+|||||+++++++.+. .+.++.+.+..  .+...+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            35689999999999999999999988754 44566664443  444554  68999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+...  .++.....     ...+++++++||++|+|++
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~  167 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNATNVE  167 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Confidence            9999999999999998887775542 25799999999999875432  22222222     1233479999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|++|.+.+.++
T Consensus       168 ~l~~~l~~~i~~~  180 (196)
T 3tkl_A          168 QSFMTMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.98  E-value=1.2e-31  Score=183.13  Aligned_cols=160  Identities=22%  Similarity=0.259  Sum_probs=123.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .++.++|+++|++|+|||||+++++++.+. .+.+|.+..... +...  ...+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            345799999999999999999999998854 456676655443 3333  356799999999999999999999999999


Q ss_pred             EEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEE-EEEeeccCC
Q 030233           90 FVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWS-IQSCSAISG  163 (181)
Q Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~  163 (181)
                      +|+|+++++++..+ ..|+..+...  ..+.|+++|+||+|+.+.    ...++......     ..++. ++++||++|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~  172 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQ-----KLGCVAYIEASSVAK  172 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHH-----HHTCSCEEECBTTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHH-----hcCCCEEEEeecCCC
Confidence            99999999999997 4455554332  257999999999998642    33333333221     12233 999999999


Q ss_pred             CCHHHHHHHHHhhhhcc
Q 030233          164 QGLYEGLDWLSNNISVK  180 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~~  180 (181)
                      +|++++|+++.+.+.++
T Consensus       173 ~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          173 IGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             BSHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            99999999999988765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.98  E-value=6e-31  Score=182.22  Aligned_cols=163  Identities=26%  Similarity=0.377  Sum_probs=121.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEEC---CeEEEEEEcCCChhhHH-HHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYK---NKSFCVWDVGGQNKIRA-LWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~d~~g~~~~~~-~~~~~~~~~d~ii~   90 (181)
                      .+.++|+++|++|+|||||+++++++.+....++.......+.+.   ...+.+|||||++.+.. .+..+++.+|++++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~   84 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF   84 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEE
Confidence            457999999999999999999999988776666666666666665   68899999999999998 78889999999999


Q ss_pred             EEECCCcc-cHHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc----------------------
Q 030233           91 VVDSSDRE-RISEARNELHQILSD--NELSNAALLVFANKQDLPNVMPTAEVADKLEL----------------------  145 (181)
Q Consensus        91 v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~----------------------  145 (181)
                      |+|+++.. ++.....++..++..  ....+.|+++|+||+|+.+....+.+...+..                      
T Consensus        85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~  164 (214)
T 2fh5_B           85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA  164 (214)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred             EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence            99998853 466666666555432  12257999999999999876555443332210                      


Q ss_pred             -cccC---------C--ccEEEEEeeccCC------CCHHHHHHHHHhhh
Q 030233          146 -YSLG---------Q--RRWSIQSCSAISG------QGLYEGLDWLSNNI  177 (181)
Q Consensus       146 -~~~~---------~--~~~~~~~~Sa~~~------~~i~~l~~~i~~~~  177 (181)
                       ....         .  ..+.|++|||++|      +|++++|++|.+.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence             0001         1  1788999999999      99999999998753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.98  E-value=1.6e-31  Score=181.04  Aligned_cols=162  Identities=23%  Similarity=0.277  Sum_probs=128.6

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      +++.++|+++|++|+|||||++++++..+. .+.++.+.... .+...+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            456799999999999999999999988754 34555554443 234444  57999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|+++++++.....|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  169 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD  169 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHH
Confidence            99999999999999998888876544458999999999998652  3334443333     2234589999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|++|.+.+.++
T Consensus       170 ~l~~~l~~~i~~~  182 (187)
T 2a9k_A          170 KVFFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.98  E-value=3.2e-31  Score=180.83  Aligned_cols=159  Identities=20%  Similarity=0.340  Sum_probs=127.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||++++++..+. .+.++.+.+...  +..  ....+.+|||||.+.+...+..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45689999999999999999999998865 445666655443  333  4568899999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+...  ...++.....     ...+++++++||++|+|++
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  176 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE  176 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence            9999999999999888888876543 357999999999998653  2233333322     2234589999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       177 ~l~~~l~~~i~~  188 (193)
T 2oil_A          177 LAFETVLKEIFA  188 (193)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.98  E-value=7.1e-31  Score=180.44  Aligned_cols=159  Identities=19%  Similarity=0.351  Sum_probs=126.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...++|+++|++|+|||||++++++..+. .+.++.+.+...  +...  ...+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            34689999999999999999999998864 456677655443  3333  468999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  159 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVK  159 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCHH
Confidence            9999999999999988888775532 3579999999999997532  233333222     1224579999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       160 ~l~~~l~~~i~~  171 (203)
T 1zbd_A          160 QTFERLVDVICE  171 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.98  E-value=1.2e-31  Score=182.78  Aligned_cols=159  Identities=21%  Similarity=0.307  Sum_probs=124.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||+++++++.+.. ..++.+.+.  ..+...+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            457899999999999999999999888543 445555443  3444544  68999999999999988889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|++
T Consensus        99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  172 (191)
T 2a5j_A           99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVE  172 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence            9999999999999998888876532 257999999999999642  2333333322     2234589999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       173 ~l~~~l~~~i~~  184 (191)
T 2a5j_A          173 EAFINTAKEIYR  184 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=1.1e-32  Score=187.82  Aligned_cols=159  Identities=23%  Similarity=0.388  Sum_probs=127.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ..+||+++|++|+|||||+++++++.+ ....++.+.+...  +..  ....+.+|||||++.+...+..+++.+|++++
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL  101 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence            568999999999999999999998875 3445666644443  332  56889999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||+++++++..+..|+..+... ...+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|+++
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  175 (191)
T 3dz8_A          102 MYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLA-----EQLGFDFFEASAKENISVRQ  175 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence            99999999999999888887653 2358999999999998643  2233322222     22345899999999999999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|++|.+.+.++
T Consensus       176 l~~~l~~~i~~~  187 (191)
T 3dz8_A          176 AFERLVDAICDK  187 (191)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.97  E-value=5.5e-31  Score=179.63  Aligned_cols=161  Identities=19%  Similarity=0.321  Sum_probs=122.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...++|+++|++|+|||||+++++++.+. ...++.+.+..  .+.+.+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35689999999999999999999988754 44566664443  344444  68999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.  ...++......    ...+.+++++||++|+|++
T Consensus       104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A          104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCHH
Confidence            999999999999988887666443 2257999999999998653  22333332221    1135689999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|++|.+.+.++
T Consensus       179 ~l~~~l~~~i~~~  191 (192)
T 2il1_A          179 EIFLKLVDDILKK  191 (192)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.97  E-value=7.4e-32  Score=179.81  Aligned_cols=159  Identities=19%  Similarity=0.335  Sum_probs=126.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||+++++++.+. .+.++.+.+..  .+...  ...+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999988754 44666664443  34443  468999999999999888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|++++++++....|+..+....  .+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  155 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS  155 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence            9999999999999888888776543  57899999999998652  2333333322     1234589999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|++|.+.+.++
T Consensus       156 ~l~~~l~~~~~~~  168 (168)
T 1z2a_A          156 EVFKYLAEKHLQK  168 (168)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999987653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.97  E-value=2.7e-31  Score=184.35  Aligned_cols=160  Identities=26%  Similarity=0.433  Sum_probs=126.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC------------CeEEEEEEcCCChhhHHHHH
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK------------NKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~------------~~~~~i~d~~g~~~~~~~~~   79 (181)
                      .+.++|+++|++|+|||||+++++++.+. .+.+|.+.+..  .+.+.            ...+.+|||||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            45689999999999999999999988754 34556654433  23332            57899999999999999999


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEE
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      .+++.+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...++++++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~  177 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE  177 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence            999999999999999999999999888887755443368999999999998653  2233333322     123457999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhc
Q 030233          158 CSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +||++|+|++++|++|.+.+.+
T Consensus       178 ~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          178 TSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.97  E-value=1e-31  Score=179.46  Aligned_cols=159  Identities=21%  Similarity=0.354  Sum_probs=121.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ..++|+++|++|+|||||+++++++.+. ...++.+.+..  .+...  ...+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            4689999999999999999999988753 45566664443  34443  3689999999999998888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      |+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++.....     ...+++++++||++|+|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l  155 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDNVNEI  155 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHH
Confidence            999999999999888888776542 2579999999999995432 233332222     122347999999999999999


Q ss_pred             HHHHHhhhhcc
Q 030233          170 LDWLSNNISVK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |+++.+.+.++
T Consensus       156 ~~~l~~~~~~~  166 (170)
T 1g16_A          156 FFTLAKLIQEK  166 (170)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999988654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.97  E-value=1.1e-31  Score=186.01  Aligned_cols=161  Identities=20%  Similarity=0.167  Sum_probs=124.9

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      .++..++|+++|++|+|||||+++++++.+. .+.+|.+..... +..  ....+.+|||+|++.+...+..+++.+|++
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            3456799999999999999999999998864 446777765542 222  457899999999999999999999999999


Q ss_pred             EEEEECCCcccHHH-HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhhCccccCCccE
Q 030233           89 TFVVDSSDRERISE-ARNELHQILSDNELSNAALLVFANKQDLPNV--------------MPTAEVADKLELYSLGQRRW  153 (181)
Q Consensus        89 i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~  153 (181)
                      ++|||+++++++.. ...|+..+....  ++.|+++|+||+|+.++              ...++.....     ...++
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~  175 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA-----KQLGA  175 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH-----HHHTC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH-----HHcCC
Confidence            99999999999998 577777765532  58999999999998642              2333322222     22344


Q ss_pred             -EEEEeeccCCCC-HHHHHHHHHhhhhcc
Q 030233          154 -SIQSCSAISGQG-LYEGLDWLSNNISVK  180 (181)
Q Consensus       154 -~~~~~Sa~~~~~-i~~l~~~i~~~~~~~  180 (181)
                       +|++|||++|.| ++++|+++.+.+.++
T Consensus       176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          176 EIYLEGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             SEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             CEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence             799999999998 999999999887654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.97  E-value=3.6e-32  Score=183.40  Aligned_cols=158  Identities=23%  Similarity=0.377  Sum_probs=125.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...++|+++|++|+|||||+++++++.+. .+.++.+.+.  ..+...+  ..+.+|||||++.+...+..+++.+|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            45789999999999999999999988754 4456665443  3455555  78999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|+++++++..+..|+..+....  ++.|+++|+||+|+.+..  ..++.....     ...+++++++||++|+|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  159 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNVE  159 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence            9999999999999998888876542  579999999999986532  222222222     1234479999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       160 ~l~~~l~~~~~~  171 (181)
T 3tw8_B          160 EMFNCITELVLR  171 (181)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=1.5e-30  Score=178.73  Aligned_cols=158  Identities=22%  Similarity=0.335  Sum_probs=126.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEECC------------------------------
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYKN------------------------------   60 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~~------------------------------   60 (181)
                      ..+.++|+++|++|+|||||++++++..+. .+.++.+.....  +...+                              
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            356799999999999999999999998754 445666644333  33332                              


Q ss_pred             ---------eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           61 ---------KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        61 ---------~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                               ..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+...   ...|+++|+||+|..
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcc
Confidence                     78999999999999999999999999999999999999999998888888664   249999999999943


Q ss_pred             C-CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          132 N-VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       132 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      . ....+++.....     ..+++++++||++|+|++++|++|.+.+.+
T Consensus       161 ~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          161 KFQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             -CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            2 233444444332     234589999999999999999999988765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=4.2e-31  Score=175.55  Aligned_cols=160  Identities=20%  Similarity=0.261  Sum_probs=125.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +.++|+++|++|+|||||+++++++.+. ...++.+.... .+...  ...+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            4689999999999999999999988754 34455554332 23333  35689999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      +|++++.++.....|+..+.......+.|+++|+||+|+.+.. ..++.....     ...+++++++||++|.|++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~  156 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA-----RSYGIPYIETSAKTRQGVEDAF  156 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEEECTTTCTTHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHH
Confidence            9999999999998888877654333579999999999987632 333333322     1223479999999999999999


Q ss_pred             HHHHhhhhcc
Q 030233          171 DWLSNNISVK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      +++.+.+.++
T Consensus       157 ~~l~~~~~~~  166 (166)
T 2ce2_X          157 YTLVREIRQH  166 (166)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.97  E-value=3.4e-31  Score=180.17  Aligned_cols=159  Identities=21%  Similarity=0.375  Sum_probs=126.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...++|+++|++|+|||||+++++++.+. .+.++.+.+...  +...  ...+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            35689999999999999999999998864 456676655443  3333  468999999999999988999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~  173 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINVK  173 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHH
Confidence            9999999999999988887775532 3579999999999986532  233333222     1224589999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       174 ~l~~~l~~~i~~  185 (189)
T 2gf9_A          174 QVFERLVDVICE  185 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=1.1e-31  Score=181.18  Aligned_cols=163  Identities=15%  Similarity=0.234  Sum_probs=114.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEEC---CeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEYK---NKSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      +.+.++|+++|++|+|||||++++++..+. .+.++.+.+...  +...   ...+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            346799999999999999999999998754 445666544333  3333   4689999999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCC---CCHHHHHhhhCccccCCccEEEEEeecc
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDN---ELSNAALLVFANKQDLPNV---MPTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      +++|+|++++.++.....|+..+....   ...+.|+++|+||+|+...   ...++......    ...+.+++++||+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~  160 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK  160 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence            999999999999999988887775432   2357899999999998542   22333333221    1234579999999


Q ss_pred             CCCCHHHHHHHHHhhhhcc
Q 030233          162 SGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~~  180 (181)
                      +|+|++++|++|.+.+.++
T Consensus       161 ~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          161 NAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999887653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=6.6e-32  Score=180.62  Aligned_cols=160  Identities=15%  Similarity=0.190  Sum_probs=123.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +.++|+++|++|+|||||+++++++.+. .+.++.+.+... +...  ...+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            4689999999999999999999988754 445666544433 3333  35789999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           92 VDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +|++++.++.....|+..+.+.. ...+.|+++|+||+|+....  ...+.....     ...+++++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  156 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE  156 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEecCCCCcCHHH
Confidence            99999999988888877665431 22478999999999986432  222222211     22345899999999999999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|++|.+.+.++
T Consensus       157 l~~~l~~~~~~~  168 (172)
T 2erx_A          157 LFQELLNLEKRR  168 (172)
T ss_dssp             HHHHHHHTCCSS
T ss_pred             HHHHHHHHHhhh
Confidence            999999988765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=6.1e-31  Score=181.17  Aligned_cols=159  Identities=22%  Similarity=0.353  Sum_probs=126.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+.+..  .+.+.+  ..+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            45689999999999999999999998854 44566665443  444444  58999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|+|++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE  159 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence            9999999999999999888775542 2579999999999997632  233333322     1234579999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       160 ~l~~~l~~~i~~  171 (206)
T 2bcg_Y          160 DAFLTMARQIKE  171 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=8.7e-32  Score=186.95  Aligned_cols=161  Identities=22%  Similarity=0.281  Sum_probs=126.4

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE--C--C-eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY--K--N-KSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~--~--~-~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      +...++|+++|++|+|||||+++++++.+. .+.++.+........  .  . ..+.+|||||++.+...+..++..+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            346799999999999999999999987754 446777766555444  1  1 789999999999998888899999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.  ...+......     ...+++++++||++|.|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~g  161 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL-----KGKNYEYFEISAKTAHN  161 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT-----TTCCCEEEEEBTTTTBT
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCcEEEEecCCCCC
Confidence            999999999999999888887775432 246899999999998753  2222222222     33556899999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 030233          166 LYEGLDWLSNNISVK  180 (181)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (181)
                      ++++|++|.+.+.++
T Consensus       162 v~~l~~~l~~~~~~~  176 (218)
T 4djt_A          162 FGLPFLHLARIFTGR  176 (218)
T ss_dssp             TTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.97  E-value=1.8e-31  Score=183.79  Aligned_cols=160  Identities=18%  Similarity=0.192  Sum_probs=96.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC--Ccc-cccCccce--eEEEEEEC----CeEEEEEEcCCChhhHHHHHhhccCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG--EIV-TTTPTIGF--NVEAVEYK----NKSFCVWDVGGQNKIRALWRHYFRDT   85 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~--~~~-~~~~~~~~--~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~   85 (181)
                      ...++|+++|++|+|||||++++++.  .+. .+.+|.+.  ....+.+.    ...+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46789999999999999999999988  543 55666663  33445554    56899999999999999999999999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCC--CCCCeEEEEEeCCCCCC---CCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNE--LSNAALLVFANKQDLPN---VMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      |++++|+|++++.++..+..|+..+.....  ..+.|+++|+||+|+.+   ....++......     ..+++++++||
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa  172 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT-----TNTLDFFDVSA  172 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH-----HTTCEEEECCC
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH-----HcCCEEEEecc
Confidence            999999999999999999999888866432  25799999999999975   233344433321     23358999999


Q ss_pred             cC-CCCHHHHHHHHHhhhhc
Q 030233          161 IS-GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~-~~~i~~l~~~i~~~~~~  179 (181)
                      ++ |.|++++|++|.+.+.+
T Consensus       173 ~~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          173 NPPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             -------CHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99 99999999999987654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=2.7e-31  Score=180.45  Aligned_cols=162  Identities=14%  Similarity=0.142  Sum_probs=120.8

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      .+.+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+..  ....+.+|||||++.+... ..+++.+|++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            4457899999999999999999999988854 45667765542 2333  3467899999999887764 5688999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCC--CCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeec-cCC
Q 030233           89 TFVVDSSDRERISEARNELHQILSDN--ELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSA-ISG  163 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~  163 (181)
                      ++|||+++++++..+..|+..+....  ...+.|+++|+||+|+...  ...++.....     ...+++++++|| ++|
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g  170 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDF  170 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcc
Confidence            99999999999999999888876531  1147999999999998642  2333333322     123458999999 899


Q ss_pred             CCHHHHHHHHHhhhhcc
Q 030233          164 QGLYEGLDWLSNNISVK  180 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~~  180 (181)
                      +|++++|+++.+.+.++
T Consensus       171 ~gv~~lf~~l~~~i~~~  187 (187)
T 3c5c_A          171 EHVQHVFHEAVREARRE  187 (187)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             ccHHHHHHHHHHHHhhC
Confidence            99999999999988653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=8.2e-32  Score=187.50  Aligned_cols=161  Identities=23%  Similarity=0.343  Sum_probs=129.6

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      .+...++|+++|++|+|||||+++++.+.+ ..+.++.+.+......    ....+.+|||||++.+...+..+++.+|+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            456789999999999999999999776653 4557777766665443    45789999999999999889999999999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +++|||++++.++..+..|+..+....  .+.|+++|+||+|+.+.....+.     .......+++++++||++|.|++
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~  163 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNFE  163 (221)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGG-----CCHHHHHTCEEEECBGGGTBTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHH-----HHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999888886642  47999999999999764332211     11123345689999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|++|.+.+...
T Consensus       164 ~l~~~l~~~l~~~  176 (221)
T 3gj0_A          164 KPFLWLARKLIGD  176 (221)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999987653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=8.7e-31  Score=179.30  Aligned_cols=161  Identities=15%  Similarity=0.178  Sum_probs=124.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ...++|+++|++|+|||||+++++++.+. .+.++.+.+... +...  ...+.+|||||++.+...+..+++.+|++++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            35789999999999999999999988754 345666644433 2233  4579999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCC-CCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNE-LSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||++++.++.....|+..+..... ..+.|+++|+||+|+.+.. ..++.....     ...+++++++||++|+|+++
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~  160 (199)
T 2gf0_A           86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA-----QEWKCAFMETSAKMNYNVKE  160 (199)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHH-----HHhCCeEEEEecCCCCCHHH
Confidence            9999999999888887766544211 2478999999999997532 223322221     12345799999999999999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|++|.+.+.++
T Consensus       161 l~~~l~~~~~~~  172 (199)
T 2gf0_A          161 LFQELLTLETRR  172 (199)
T ss_dssp             HHHHHHHHCSSS
T ss_pred             HHHHHHHHHhhh
Confidence            999999987654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=1.3e-30  Score=177.28  Aligned_cols=163  Identities=20%  Similarity=0.251  Sum_probs=115.7

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      ..++.++|+++|.+|+|||||+++++++.+.. +.++.+.... .+...+  ..+.+|||||++.+...+..+++.+|++
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            34577999999999999999999999887543 3445544332 344443  5699999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC-CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV-MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      ++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ...++..+...     ..+++++++||++|.|++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  171 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAK-----SYGIPFIETSAKTRQGVE  171 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence            999999999999998888877755433357999999999998753 23333333321     223479999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|++|.+.+.++
T Consensus       172 ~l~~~l~~~~~~~  184 (190)
T 3con_A          172 DAFYTLVREIRQY  184 (190)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.97  E-value=7.2e-31  Score=180.17  Aligned_cols=159  Identities=22%  Similarity=0.340  Sum_probs=119.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      .+.++|+++|++|+|||||+++++++.+. .+.++.+.+.  ..+...+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            35689999999999999999999988754 3456655443  3444554  78999999999988888889999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|++++.++..+..|+..+..... .+.|+++|+||+|+...  ...++.....     ...+++++++||++|+|++
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~  176 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE  176 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence            99999999999999988887755322 57999999999998642  2233333322     2234689999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       177 ~l~~~l~~~i~~  188 (200)
T 2o52_A          177 EAFLKCARTILN  188 (200)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=7.4e-31  Score=180.74  Aligned_cols=162  Identities=17%  Similarity=0.229  Sum_probs=125.6

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEE--EEC--CeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAV--EYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      +.+.++|+++|++|+|||||++++++..+. .+.++.+.+....  ...  ...+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            346799999999999999999999998754 4556666554443  333  36899999999999998888999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           89 TFVVDSSDRERISEARNELHQILSDN---ELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      ++|+|++++.++..+..|+..+....   ...+.|+++|+||+|+.... ..++......    ...+++++++||++|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~  160 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI  160 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence            99999999999998888887765432   12478999999999997432 3333333221    1244579999999999


Q ss_pred             CHHHHHHHHHhhhhc
Q 030233          165 GLYEGLDWLSNNISV  179 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (181)
                      |++++|++|.+.+.+
T Consensus       161 gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          161 NVEQAFQTIARNALK  175 (207)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1e-30  Score=180.79  Aligned_cols=160  Identities=20%  Similarity=0.340  Sum_probs=124.3

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      ....++|+++|++|+|||||++++++..+ ....++.+.+.  ..+...+  ..+.+|||||++.+...+..+++.+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34578999999999999999999998875 34556666443  3455555  6899999999999988888999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      ++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++.....     ...+++++++||++|.|++
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~  170 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA-----KELGIPFIESSAKNDDNVN  170 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence            99999999999999888887776542 2478999999999985322 223332222     1123479999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|++|.+.+.+
T Consensus       171 ~l~~~l~~~~~~  182 (213)
T 3cph_A          171 EIFFTLAKLIQE  182 (213)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=1.2e-30  Score=176.73  Aligned_cols=161  Identities=19%  Similarity=0.210  Sum_probs=122.2

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      +...++|+++|++|+|||||+++++++.+. .+.+|.+.... .+..  ....+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            456799999999999999999999998764 34666665443 2333  3468999999999999999999999999999


Q ss_pred             EEEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhhCccccCCccEE
Q 030233           90 FVVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNV--------------MPTAEVADKLELYSLGQRRWS  154 (181)
Q Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~  154 (181)
                      +|||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+.              .+.++.......    ....+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~  157 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAAT  157 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH----cCCcE
Confidence            99999999999988 56666554321  57999999999998642              222222222111    11247


Q ss_pred             EEEeecc-CCCCHHHHHHHHHhhhhcc
Q 030233          155 IQSCSAI-SGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       155 ~~~~Sa~-~~~~i~~l~~~i~~~~~~~  180 (181)
                      ++++||+ +|+|++++|+++.+.+.++
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~k  184 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACVNK  184 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence            9999999 6899999999999987653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-31  Score=185.50  Aligned_cols=161  Identities=24%  Similarity=0.382  Sum_probs=121.8

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      ....++|+++|++|+|||||++++++..+. .+.++.+.+.  ..+...+  ..+.+|||||++.+...+..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            355789999999999999999999998864 4456666443  3455555  6899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      |+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|+|+
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi  163 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENV  163 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCH
Confidence            99999999999999998888775542 257899999999998642  2333333322     223458999999999999


Q ss_pred             HHHHHHHHhhhhcc
Q 030233          167 YEGLDWLSNNISVK  180 (181)
Q Consensus       167 ~~l~~~i~~~~~~~  180 (181)
                      +++|++|.+.+.++
T Consensus       164 ~~l~~~l~~~i~~~  177 (223)
T 3cpj_B          164 DKAFEELINTIYQK  177 (223)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.3e-30  Score=176.67  Aligned_cols=158  Identities=17%  Similarity=0.151  Sum_probs=122.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...+  ..+.+|||||++.+...+..+++.+|++++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   95 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   95 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence            35689999999999999999999988754 44566654442 344443  789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--------------CHHHHHhhhCccccCCccE-E
Q 030233           91 VVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVM--------------PTAEVADKLELYSLGQRRW-S  154 (181)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~-~  154 (181)
                      |||+++++++.... .|+..+....  ++.|+++|+||+|+.+..              ..++.....     ...+. +
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~  168 (194)
T 2atx_A           96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA-----KEIGACC  168 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH-----HHHTCSC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH-----HHcCCcE
Confidence            99999999999987 5666665432  479999999999997531              112221111     11222 6


Q ss_pred             EEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          155 IQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++++||++|+|++++|+++.+.+..
T Consensus       169 ~~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          169 YVECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999988753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=4.2e-30  Score=176.44  Aligned_cols=165  Identities=20%  Similarity=0.237  Sum_probs=121.2

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE-EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV-EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      ++...++|+++|++|+|||||+++++++.+. .+.++.+... ..+...+  ..+.+|||||++.+...+..+++.+|++
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            4456799999999999999999999988754 3455655443 2344444  5899999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---------ccccCCccE-EEEE
Q 030233           89 TFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---------LYSLGQRRW-SIQS  157 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~  157 (181)
                      ++|||+++++++.... .|+..+...  .++.|+++|+||+|+.+.....+......         ...+...+. ++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            9999999999999984 455544332  14799999999999976421111110000         000011222 7999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhc
Q 030233          158 CSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +||++|+|++++|++|.+.+.+
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=2.6e-30  Score=177.88  Aligned_cols=164  Identities=21%  Similarity=0.234  Sum_probs=118.2

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      ...++.++|+++|++|+|||||+++++++.+. .+.++.+.... .+..  ....+.+|||||++.+...+..+++.+|+
T Consensus        25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 4gzl_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  104 (204)
T ss_dssp             -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            34567899999999999999999999988754 44555543332 2333  34567799999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc---------cc-CCccEEEE
Q 030233           88 LTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY---------SL-GQRRWSIQ  156 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~  156 (181)
                      +++|||++++.++.... .|+..+....  .+.|+++|+||+|+.+.....+........         .. .....+++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  182 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL  182 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEE
Confidence            99999999999999987 5655554432  579999999999987532211111111000         00 11224699


Q ss_pred             EeeccCCCCHHHHHHHHHhhh
Q 030233          157 SCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       157 ~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      ++||++|+|++++|+++.+.+
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          183 ECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTT
T ss_pred             EeeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999998865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=2.5e-30  Score=175.09  Aligned_cols=164  Identities=20%  Similarity=0.204  Sum_probs=121.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ++.++|+++|++|+|||||+++++++.+. .+.++.+.... .+...  ...+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            56799999999999999999999987754 34555554332 23333  3567799999999999999999999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---------ccccCCcc-EEEEEee
Q 030233           91 VVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---------LYSLGQRR-WSIQSCS  159 (181)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~S  159 (181)
                      |+|++++.++.... .|+..+....  ++.|+++|+||+|+.+.....+......         ...+...+ .+++++|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            99999999999987 5666654432  3799999999999865321111100000         00011123 3899999


Q ss_pred             ccCCCCHHHHHHHHHhhhhcc
Q 030233          160 AISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (181)
                      |++|+|++++|+++.+.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCccCHHHHHHHHHHHHhcc
Confidence            999999999999999987653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.4e-30  Score=178.42  Aligned_cols=167  Identities=21%  Similarity=0.263  Sum_probs=120.3

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      ++++.+++|+++|++|+|||||+++++++.+.. +.++.+.... .+...+  ..+.+|||||++.+...+..+++.+|+
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (207)
T 2fv8_A           20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (207)
T ss_dssp             GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred             cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence            445678999999999999999999999987543 4456554432 244444  689999999999999899999999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc---------ccCCcc-EEEE
Q 030233           88 LTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY---------SLGQRR-WSIQ  156 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~  156 (181)
                      +++|+|+++++++.... .|+..+...  .++.|+++|+||+|+.+.....+........         .+...+ .+++
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  177 (207)
T 2fv8_A          100 ILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYL  177 (207)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEE
Confidence            99999999999999884 555555432  1579999999999987532211111111000         001112 2799


Q ss_pred             EeeccCCCCHHHHHHHHHhhhhcc
Q 030233          157 SCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       157 ~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ++||++|+|++++|++|.+.+.++
T Consensus       178 ~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          178 ECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=179.09  Aligned_cols=164  Identities=16%  Similarity=0.170  Sum_probs=104.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...  ...+.+|||||++.+...+..+++.+|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            46799999999999999999999988754 34555554332 23343  3579999999999999999999999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhC---------ccccCCccE-EEEEee
Q 030233           91 VVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLE---------LYSLGQRRW-SIQSCS  159 (181)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S  159 (181)
                      |||++++.++..+. .|+..+....  .+.|+++|+||+|+.......+......         ...+...+. +++++|
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            99999999999987 5666654432  5789999999999976322111110000         000111233 899999


Q ss_pred             ccCCCCHHHHHHHHHhhhhcc
Q 030233          160 AISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (181)
                      |++|+|++++|++|.+.+.+.
T Consensus       190 A~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999987654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.97  E-value=1.7e-30  Score=178.22  Aligned_cols=161  Identities=17%  Similarity=0.155  Sum_probs=117.0

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      ..+.+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...+  ..+.+|||||++.+...+..+++.+|+
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            34567899999999999999999999988754 44566654433 344444  577899999999999889999999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhhCccccCCcc
Q 030233           88 LTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNV--------------MPTAEVADKLELYSLGQRR  152 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~  152 (181)
                      +++|||+++++++.... .|+..+....  ++.|+++|+||+|+.+.              ...++.....     ...+
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~  167 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-----EEIK  167 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-----HhcC
Confidence            99999999999999987 5766665432  47999999999998642              1122222211     1122


Q ss_pred             -EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          153 -WSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       153 -~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                       .+++++||++|+|++++|+++.+.+.+
T Consensus       168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          168 AASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence             379999999999999999999988754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=1.2e-30  Score=180.44  Aligned_cols=160  Identities=18%  Similarity=0.156  Sum_probs=122.3

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ..+.++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...  ...+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            456799999999999999999999988754 45566665443 23333  368999999999999999999999999999


Q ss_pred             EEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----------CHHHHHhhhCccccCCcc-EEEEE
Q 030233           90 FVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVM----------PTAEVADKLELYSLGQRR-WSIQS  157 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~  157 (181)
                      +|||+++++++.... .|+..+....  ++.|+++|+||+|+.+..          ..++.....     ...+ .++++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~  158 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIE  158 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEE
Confidence            999999999999987 5666664432  479999999999986532          222222211     1122 37999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhcc
Q 030233          158 CSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +||++|+|++++|+++.+.+.++
T Consensus       159 ~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          159 CSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             ccCCCCCCHHHHHHHHHHHHhhh
Confidence            99999999999999999887653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=5.7e-31  Score=180.10  Aligned_cols=162  Identities=18%  Similarity=0.215  Sum_probs=116.1

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE--E---ECCeEEEEEEcCCChhhHHHH---HhhccC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV--E---YKNKSFCVWDVGGQNKIRALW---RHYFRD   84 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~i~d~~g~~~~~~~~---~~~~~~   84 (181)
                      .+++.++|+++|++|+|||||++++.+............+...+  .   .....+.+|||||++.+....   ..+++.
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            34578999999999999999999988765443322222222222  2   255799999999999987776   789999


Q ss_pred             CCEEEEEEECCCc--ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhhCcccc----CCccEE
Q 030233           85 TLGLTFVVDSSDR--ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVADKLELYSL----GQRRWS  154 (181)
Q Consensus        85 ~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~----~~~~~~  154 (181)
                      +|++|+|||++++  +++.....|+..+...  ..+.|+++|+||+|+.+...    .+.+........+    ...+++
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS  173 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence            9999999999987  6677777777766432  25899999999999875221    1222222211111    256789


Q ss_pred             EEEeeccCCCCHHHHHHHHHhhh
Q 030233          155 IQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      |+++||++ +|++++|+.+.+.+
T Consensus       174 ~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          174 FYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEECTTS-THHHHHHHHHHHHT
T ss_pred             eEEEEech-hhHHHHHHHHHHHh
Confidence            99999999 99999999998875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=3.8e-30  Score=177.23  Aligned_cols=160  Identities=19%  Similarity=0.210  Sum_probs=122.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .+.++|+++|++|+|||||++++++..+.. +.+|.+.... .+..  ....+.+|||||++.+...+..+++.+|++++
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            457899999999999999999999988643 4566665443 2333  34789999999999999999999999999999


Q ss_pred             EEECCCcccHHHH-HHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhhCccccCCccEEE
Q 030233           91 VVDSSDRERISEA-RNELHQILSDNELSNAALLVFANKQDLPNV--------------MPTAEVADKLELYSLGQRRWSI  155 (181)
Q Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~  155 (181)
                      |||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+.              ...++.......    .....|
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~  179 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ----IGAATY  179 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH----HTCSEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH----cCCCEE
Confidence            9999999999988 56666664432  57999999999998642              122222221110    012479


Q ss_pred             EEeecc-CCCCHHHHHHHHHhhhhcc
Q 030233          156 QSCSAI-SGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       156 ~~~Sa~-~~~~i~~l~~~i~~~~~~~  180 (181)
                      ++|||+ +|+|++++|+.+.+.+.++
T Consensus       180 ~e~SAk~~~~gv~~lf~~l~~~~l~~  205 (205)
T 1gwn_A          180 IECSALQSENSVRDIFHVATLACVNK  205 (205)
T ss_dssp             EECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred             EEeeeccCCcCHHHHHHHHHHHHhhC
Confidence            999999 6899999999999887653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=8.6e-31  Score=178.72  Aligned_cols=159  Identities=13%  Similarity=0.133  Sum_probs=113.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC--cccccCccceeE--EEEEECC--eEEEEEEcCCChh-hHHHHHhhccCCCE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE--IVTTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNK-IRALWRHYFRDTLG   87 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~-~~~~~~~~~~~~d~   87 (181)
                      +..++|+++|++|+|||||++++++..  +....++++.+.  ..+.+.+  ..+.+|||+|.+. +..+...+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            457899999999999999999999633  333333444332  3344544  4668999999765 34456667788999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +++|||++++++|.....|+..+.......+.|+++|+||+|+...  ...++... ..    ...+.++++|||++|+|
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~-~a----~~~~~~~~e~SA~~g~~  158 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA-XA----VVFDXKFIETSAAVQHN  158 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHH-HH----HHhCCceEEeccccCCC
Confidence            9999999999999999888877655333357999999999998642  22222111 11    12335799999999999


Q ss_pred             HHHHHHHHHhhhh
Q 030233          166 LYEGLDWLSNNIS  178 (181)
Q Consensus       166 i~~l~~~i~~~~~  178 (181)
                      ++++|+++.+.+.
T Consensus       159 v~~lf~~l~~~~~  171 (192)
T 2cjw_A          159 VKELFEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=9.8e-31  Score=176.61  Aligned_cols=160  Identities=18%  Similarity=0.157  Sum_probs=111.6

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE---EEECCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA---VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      .+++.++|+++|++|+|||||+++++++.+. .+.+|.+.....   +......+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            3467899999999999999999999988753 344555432221   222446678999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC------------HHHHHhhhCccccCCcc-EE
Q 030233           89 TFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMP------------TAEVADKLELYSLGQRR-WS  154 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~  154 (181)
                      ++|+|+++++++.... .|+..+....  ++.|+++|+||+|+.+...            .++.....     ...+ .+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~  156 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK-----KLIGAPA  156 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH-----HHHTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH-----HHcCCCE
Confidence            9999999999999987 4666554432  4799999999999865321            12211111     1123 37


Q ss_pred             EEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          155 IQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++++||++|+|++++|+++.+.+.+
T Consensus       157 ~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          157 YIECSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999988754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=1.2e-30  Score=176.76  Aligned_cols=162  Identities=20%  Similarity=0.266  Sum_probs=116.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC--Cc-ccccCccceeEEEEEE-------CCeEEEEEEcCCChhhHHHHHhhccCCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG--EI-VTTTPTIGFNVEAVEY-------KNKSFCVWDVGGQNKIRALWRHYFRDTL   86 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~--~~-~~~~~~~~~~~~~~~~-------~~~~~~i~d~~g~~~~~~~~~~~~~~~d   86 (181)
                      +++|+++|++|+|||||++++++.  .+ ..+.+|.+.+......       ....+.+|||+|++.+...++.+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999985  33 3456777766554432       4668999999999999888888899999


Q ss_pred             EEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccE----EEEEeecc
Q 030233           87 GLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRW----SIQSCSAI  161 (181)
Q Consensus        87 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~  161 (181)
                      ++++|+|++++ .++..+..|+..+....  ++.|+++|+||+|+.+...................++    .++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999987 57888888988875532  4789999999999875222111111111111112222    49999999


Q ss_pred             CCC-CHHHHHHHHHhhhhcc
Q 030233          162 SGQ-GLYEGLDWLSNNISVK  180 (181)
Q Consensus       162 ~~~-~i~~l~~~i~~~~~~~  180 (181)
                      +|. +++++++.+.+.+.+.
T Consensus       160 ~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          160 EESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHCC
T ss_pred             cCchhHHHHHHHHHHHHhcc
Confidence            997 9999999999887654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.3e-32  Score=187.40  Aligned_cols=159  Identities=21%  Similarity=0.345  Sum_probs=117.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccce--eEEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGF--NVEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~--~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +.++|+++|++|+|||||++++++..+.. ..++.+.  ....+...+  ..+.+|||||++.+...+..+++.+|++++
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV  111 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999887543 3455543  334455555  679999999999999888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT--AEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+....  ++...     .....+++++++||++|+|+++
T Consensus       112 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~vSA~~g~gv~~  185 (199)
T 3l0i_B          112 VYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKE-----FADSLGIPFLETSAKNATNVEQ  185 (199)
T ss_dssp             CC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CH-----HHHTTTCCBCCCCC---HHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHH-----HHHHcCCeEEEEECCCCCCHHH
Confidence            999999999999999888875543 357999999999998653211  11111     1122345799999999999999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|++|.+.+.++
T Consensus       186 l~~~l~~~l~~~  197 (199)
T 3l0i_B          186 SFMTMAAEIKKR  197 (199)
T ss_dssp             HHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.96  E-value=4.5e-29  Score=170.28  Aligned_cols=161  Identities=14%  Similarity=0.101  Sum_probs=109.5

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEE-CCeEEEEEEcCC----------ChhhHHHHHh
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY-KNKSFCVWDVGG----------QNKIRALWRH   80 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g----------~~~~~~~~~~   80 (181)
                      .+...++|+++|++|+|||||++++++.. .....++.+.+...... .+..+.+|||||          ++.+...+..
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            34567999999999999999999999987 44455555544332211 234799999999          6777777888


Q ss_pred             hccCC---CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEE
Q 030233           81 YFRDT---LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        81 ~~~~~---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      +++.+   |++++|+|++++.++....  +...+..   .+.|+++|+||+|+.+.....................++++
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence            87766   9999999999877766532  1122222   47899999999999764443322222211111234568999


Q ss_pred             eeccCCCCHHHHHHHHHhhhh
Q 030233          158 CSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      +||++|+|++++|++|.+.+.
T Consensus       174 ~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          174 FSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999998775

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=6.5e-29  Score=167.10  Aligned_cols=162  Identities=18%  Similarity=0.169  Sum_probs=119.0

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccc-cC--ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TP--TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      +..+.++|+++|++|+|||||+++++++.+... .+  +.......+...+..+.+|||||++.+...+..++..+|+++
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            346789999999999999999999998875432 22  333444556778889999999999998888888889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc--ccCCc--cEEEEEeeccCCCC
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY--SLGQR--RWSIQSCSAISGQG  165 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~Sa~~~~~  165 (181)
                      +|+|++++..... ...+..+..    .+.|+++|+||+|+.+. ..+++...+...  .....  ..+++++||++|+|
T Consensus        84 ~v~d~~~~~~~~~-~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (178)
T 2lkc_A           84 LVVAADDGVMPQT-VEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG  157 (178)
T ss_dssp             EEEETTCCCCHHH-HHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred             EEEECCCCCcHHH-HHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence            9999987433222 222333222    47899999999999763 334444333221  11122  37899999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 030233          166 LYEGLDWLSNNISVK  180 (181)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (181)
                      ++++|++|.+.+...
T Consensus       158 v~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          158 LDHLLEMILLVSEME  172 (178)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999999887654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=2.8e-29  Score=181.47  Aligned_cols=157  Identities=16%  Similarity=0.141  Sum_probs=116.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccc----ccCccceeEEEEEECCeEEEEEEcCCChhhHH---HHHhhccCCCEEEEE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVT----TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA---LWRHYFRDTLGLTFV   91 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~d~ii~v   91 (181)
                      ||+++|++|+|||||++++.++.++.    ..+|.++....+. ....+++|||+|+++|..   .+..++++++++|+|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV   79 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV   79 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence            68999999999999999988765443    5688887776652 458899999999999964   478899999999999


Q ss_pred             EECCCc--ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhhCccccCC----ccEEEEEeecc
Q 030233           92 VDSSDR--ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVADKLELYSLGQ----RRWSIQSCSAI  161 (181)
Q Consensus        92 ~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~Sa~  161 (181)
                      ||++++  +.+.....|+..+...  .+++|+++++||+|+.++..    .+++........+..    .++.|++|||+
T Consensus        80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk  157 (331)
T 3r7w_B           80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF  157 (331)
T ss_dssp             CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred             EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence            999987  2223333333333221  25799999999999976432    133444333333332    57899999999


Q ss_pred             CCCCHHHHHHHHHhhhhc
Q 030233          162 SGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~~~  179 (181)
                      + .||.++|..+.+.+.+
T Consensus       158 d-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          158 D-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             S-SHHHHHHHHHHTTSST
T ss_pred             C-CcHHHHHHHHHHHHHh
Confidence            8 6999999999988764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.96  E-value=9.4e-29  Score=168.53  Aligned_cols=160  Identities=19%  Similarity=0.211  Sum_probs=115.4

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEE-ECCeEEEEEEcCC----------ChhhHHHHHhh
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVE-YKNKSFCVWDVGG----------QNKIRALWRHY   81 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~d~~g----------~~~~~~~~~~~   81 (181)
                      .+...++|+++|++|+|||||++++++.......++.+.+..... ..+..+.+|||||          .+.+...+..+
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   98 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY   98 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence            345678999999999999999999999886666676665544322 2455788999999          66677777777


Q ss_pred             ccCC---CEEEEEEECCCcccHHHH--HHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEE
Q 030233           82 FRDT---LGLTFVVDSSDRERISEA--RNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQ  156 (181)
Q Consensus        82 ~~~~---d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (181)
                      ++.+   |++++|+|+++..+....  ..|+..       .+.|+++|+||+|+.+....+...+...........++++
T Consensus        99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 3pqc_A           99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII  171 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred             HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence            7665   999999999875443332  222222       2689999999999976444443333322211122445799


Q ss_pred             EeeccCCCCHHHHHHHHHhhhhc
Q 030233          157 SCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       157 ~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++||++|+|++++|+++.+.+.+
T Consensus       172 ~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          172 PTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEecCCCCCHHHHHHHHHHHhhc
Confidence            99999999999999999998865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=6.1e-28  Score=168.71  Aligned_cols=161  Identities=17%  Similarity=0.160  Sum_probs=110.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCeEEEEEEcCCC------hh----hHHHHHhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNKSFCVWDVGGQ------NK----IRALWRHY   81 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~------~~----~~~~~~~~   81 (181)
                      .+.++|+++|++|+|||||++++++..+...   ..|.......+......+.+|||||.      +.    +.. +..+
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~  105 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-ITAL  105 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HHHh
Confidence            4679999999999999999999999876421   11333444445567889999999998      43    222 2345


Q ss_pred             ccCCCEEEEEEECCCcccHH--HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHH-HhhhCccccCCcc--EEEE
Q 030233           82 FRDTLGLTFVVDSSDRERIS--EARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEV-ADKLELYSLGQRR--WSIQ  156 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~--~~~~  156 (181)
                      +..+|++++|+|++++.++.  ....++..+...  ..+.|+++|+||+|+.+....... .... .......+  ++++
T Consensus       106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLI-KQILDNVKNPIKFS  182 (228)
T ss_dssp             HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHH-HHHHHHCCSCEEEE
T ss_pred             hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHH-HHHHHhcCCCceEE
Confidence            67889999999999987764  233455555433  247999999999999754322111 1111 00111222  6899


Q ss_pred             EeeccCCCCHHHHHHHHHhhhhc
Q 030233          157 SCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       157 ~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++||++|+|++++|++|.+.+.+
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=6e-31  Score=181.02  Aligned_cols=164  Identities=21%  Similarity=0.233  Sum_probs=120.2

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLG   87 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~   87 (181)
                      +...+.++|+++|++|+|||||+++++++.+. .+.++.+.... .+..  ....+.+|||||++.+...+..+++.+|+
T Consensus        25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 3th5_A           25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV  104 (204)
Confidence            44567899999999999999999999987753 33444443222 1222  44677799999999999999999999999


Q ss_pred             EEEEEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH---------HHHhhhCccccCCccE-EEE
Q 030233           88 LTFVVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMPTA---------EVADKLELYSLGQRRW-SIQ  156 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~  156 (181)
                      +++|+|++++.++.... .|+..+... . ++.|+++|+||+|+.+.....         .+........+...+. +++
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  182 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL  182 (204)
Confidence            99999999999999887 555554332 2 379999999999997532111         1111111112233344 799


Q ss_pred             EeeccCCCCHHHHHHHHHhhh
Q 030233          157 SCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       157 ~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      ++||++|+|++++|++|.+.+
T Consensus       183 ~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          183 ECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999999998765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.96  E-value=3.1e-28  Score=163.31  Aligned_cols=152  Identities=15%  Similarity=0.190  Sum_probs=109.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChhh----HH--H--HHhhcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNKI----RA--L--WRHYFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~~----~~--~--~~~~~~   83 (181)
                      ...+|+++|++|+|||||++++++.......+    +.......+.+.+..+.+|||||.+.+    ..  .  ...+++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE   82 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence            45799999999999999999999876432222    223344556678888999999997542    11  1  224578


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      .+|++++|+|++++.++. ...|+..+.... ..++|+++|+||+|+.+...          ......+.+++++||++|
T Consensus        83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~g  150 (172)
T 2gj8_A           83 QADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTG  150 (172)
T ss_dssp             TCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTC
T ss_pred             hCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCCC
Confidence            999999999999888775 345555554432 24799999999999854211          111224568999999999


Q ss_pred             CCHHHHHHHHHhhhhc
Q 030233          164 QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (181)
                      +|++++|++|.+.+..
T Consensus       151 ~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          151 EGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             TTHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHhhh
Confidence            9999999999987653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=1.8e-27  Score=158.46  Aligned_cols=148  Identities=21%  Similarity=0.235  Sum_probs=107.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCc--cceeEEEEEECCeEEEEEEcCCChhhH------HHHHhhcc--C
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPT--IGFNVEAVEYKNKSFCVWDVGGQNKIR------ALWRHYFR--D   84 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~   84 (181)
                      +.++|+++|++|+|||||++++++..+. ...++  .......+.+.+..+.+|||||++.+.      .....+++  .
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   81 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence            4689999999999999999999987632 22232  233344566678899999999987653      44555654  8


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEeec
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +|++++|+|+++.+   ....|+..+..    .+.|+++|+||+|+...    ...+.+.+..        +++++++||
T Consensus        82 ~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~SA  146 (165)
T 2wji_A           82 PDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA  146 (165)
T ss_dssp             CSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred             CCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------CCCEEEEEc
Confidence            99999999998743   33446655544    36899999999997431    1223333322        246999999


Q ss_pred             cCCCCHHHHHHHHHhhhh
Q 030233          161 ISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~  178 (181)
                      ++|+|++++|+++.+.+.
T Consensus       147 ~~~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          147 AKKMGIEELKKAISIAVK  164 (165)
T ss_dssp             GGTBSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHhh
Confidence            999999999999998774

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=9.1e-28  Score=158.92  Aligned_cols=147  Identities=19%  Similarity=0.220  Sum_probs=106.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChh-------hHHHHHhhccCCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNK-------IRALWRHYFRDTL   86 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~d   86 (181)
                      ++|+++|++|+|||||++++++..+....+    +.......+...+..+.+|||||...       +...+..+++.+|
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE   81 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence            589999999999999999999887432222    22334445666888999999999876       4566777889999


Q ss_pred             EEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccE-EEEEeeccCCCC
Q 030233           87 GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRW-SIQSCSAISGQG  165 (181)
Q Consensus        87 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  165 (181)
                      ++++|+|++++.+..  ..++...+..   .+.|+++|+||+|+.+.  .++..+.     . ..+. +++++||++|.|
T Consensus        82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-----~-~~~~~~~~~~Sa~~~~g  148 (161)
T 2dyk_A           82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPL-----Y-GLGFGDPIPTSSEHARG  148 (161)
T ss_dssp             EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGG-----G-GGSSCSCEECBTTTTBS
T ss_pred             EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHH-----H-hCCCCCeEEEecccCCC
Confidence            999999998764432  2334344333   47899999999998753  1111111     1 1222 689999999999


Q ss_pred             HHHHHHHHHhhh
Q 030233          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 i~~l~~~i~~~~  177 (181)
                      ++++|+++.+.+
T Consensus       149 v~~l~~~l~~~l  160 (161)
T 2dyk_A          149 LEELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             hHHHHHHHHHhC
Confidence            999999998875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=1.9e-27  Score=172.94  Aligned_cols=162  Identities=19%  Similarity=0.203  Sum_probs=121.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC--c--ccccCccceeEEEEEE-CCeEEEEEEcCCChhh-----HHHHHhhccCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE--I--VTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKI-----RALWRHYFRDT   85 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~--~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~-----~~~~~~~~~~~   85 (181)
                      ..+||+++|++|+|||||+++++++.  +  ..+.+|.+.....+.+ .+..+.+|||||++.+     ...+..+++.+
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            36899999999999999999999874  2  2466788888777776 6789999999999988     56788888999


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCCCCHHH---HHhhhCccccCCc---cEEEEEe
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSD-NELSNAALLVFANKQDLPNVMPTAE---VADKLELYSLGQR---RWSIQSC  158 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~  158 (181)
                      |++++|||+++++++..+..|...+... ...+++|+++|+||+|+.+.....+   +............   .++++++
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t  161 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT  161 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence            9999999999999999887664433221 1125799999999999875222210   1111111111222   3689999


Q ss_pred             eccCCCCHHHHHHHHHhhhh
Q 030233          159 SAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ||++ .++.++|..+.+.+.
T Consensus       162 Sa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          162 SIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CTTS-SHHHHHHHHHHHTTC
T ss_pred             eecC-ChHHHHHHHHHHHHc
Confidence            9999 899999999887654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=6.3e-27  Score=171.80  Aligned_cols=159  Identities=18%  Similarity=0.189  Sum_probs=119.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ...++|+++|++|+|||||+++++++.+. .+.+|.+.... .+...+  ..+.+|||||++.+...+..+++.+|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            45689999999999999999999988753 44555554332 234444  456699999999999999999999999999


Q ss_pred             EEECCCcccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------HHHHHhhhCccccCCcc-EE
Q 030233           91 VVDSSDRERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMP--------------TAEVADKLELYSLGQRR-WS  154 (181)
Q Consensus        91 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~-~~  154 (181)
                      |||++++.++.... .|+..+....  .+.|+++|+||+|+.+...              .++.....     ...+ .+
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~  305 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA-----KEIGAVK  305 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH-----HHTTCSE
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH-----HHcCCcE
Confidence            99999999999887 4555554322  3799999999999864311              11111111     1123 37


Q ss_pred             EEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          155 IQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ++++||++|+|++++|+++.+.+.+.
T Consensus       306 ~~~~Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          306 YLECSALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=9.3e-27  Score=169.29  Aligned_cols=160  Identities=16%  Similarity=0.157  Sum_probs=119.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEEC-CeEEEEEEcCCChh----------hHHHH
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYK-NKSFCVWDVGGQNK----------IRALW   78 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~d~~g~~~----------~~~~~   78 (181)
                      |...-.|+++|.+|+|||||+|++++..+....+.++++    ....... +.++.+|||||...          +...+
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            445668999999999999999999998865444444433    3334556 89999999999743          34567


Q ss_pred             HhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC-CCCCHHHHHhhhCccccCCccEEEEE
Q 030233           79 RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP-NVMPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        79 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      ..+++.+|++++|+|++++.+......|+..+..    .+.|+++|+||+|+. +..........+...  .....++++
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~~  160 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIVP  160 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEEE
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEEE
Confidence            7888899999999999988888776665665543    478999999999987 433333332222211  112346999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhc
Q 030233          158 CSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +||++|.|++++|+++.+.+.+
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EeCCCCCCHHHHHHHHHHhCcc
Confidence            9999999999999999988764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=5.2e-28  Score=164.28  Aligned_cols=160  Identities=18%  Similarity=0.226  Sum_probs=108.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEECCeEEEEEEcCC-----------ChhhHHHHHhhccC-
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEYKNKSFCVWDVGG-----------QNKIRALWRHYFRD-   84 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~~~~~~~~-   84 (181)
                      ++|+++|++|+|||||++++++..+.. ..++.......+...  .+.+|||||           ++.+...+..+++. 
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   79 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999887543 334333333334444  789999999           66777777777776 


Q ss_pred             CCEEEEEEECCCcccHHHH-HHHHHH--------HHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccE
Q 030233           85 TLGLTFVVDSSDRERISEA-RNELHQ--------ILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRW  153 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~  153 (181)
                      ++++++|+++.+..++... ..|...        +.......+.|+++|+||+|+....  ..+++...+... ......
T Consensus        80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~  158 (190)
T 2cxx_A           80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDK  158 (190)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHH
T ss_pred             hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCC
Confidence            7766666666666777665 333321        1111111479999999999987643  122233333221 011134


Q ss_pred             EEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          154 SIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +++++||++|+|++++|+++.+.+.++
T Consensus       159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          159 VFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            589999999999999999999987654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.95  E-value=2.7e-27  Score=164.78  Aligned_cols=163  Identities=13%  Similarity=0.164  Sum_probs=110.1

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEE----EEE-ECCeEEEEEEcCCC----------hhhH
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVE----AVE-YKNKSFCVWDVGGQ----------NKIR   75 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~----~~~-~~~~~~~i~d~~g~----------~~~~   75 (181)
                      ..+...++|+++|.+|+|||||+|++++.. .....++.+++..    .+. ..+..+.+|||||.          +.+.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            344567899999999999999999999987 3333343333322    222 24578999999994          4455


Q ss_pred             HHHHhhccC---CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccC---
Q 030233           76 ALWRHYFRD---TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLG---  149 (181)
Q Consensus        76 ~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~---  149 (181)
                      .....+++.   +|++++|+|+.+..+  .....+...+..   .+.|+++|+||+|+...................   
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~  178 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD  178 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence            666666655   788999999987533  222333333333   478999999999987633322222211111111   


Q ss_pred             ---CccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          150 ---QRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       150 ---~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                         ....+++++||++|+|++++|++|.+.+..
T Consensus       179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence               356789999999999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=2.1e-26  Score=156.21  Aligned_cols=153  Identities=20%  Similarity=0.230  Sum_probs=113.8

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCcc--ceeEEEEEECCeEEEEEEcCCChhhH------HHHHhhcc
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTI--GFNVEAVEYKNKSFCVWDVGGQNKIR------ALWRHYFR   83 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~i~d~~g~~~~~------~~~~~~~~   83 (181)
                      .+++.++|+++|++|+|||||++++++..+ ....++.  ......+...+..+.+|||||++.+.      ..+..++.
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            356789999999999999999999998763 2223332  33445566788999999999987763      44555554


Q ss_pred             --CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEE
Q 030233           84 --DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        84 --~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                        .++++++|+|.++   +.....|+..+..    .+.|+++|+||+|+...    ...+++.+..        ++++++
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~  147 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVP  147 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEE
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh--------CCCeEE
Confidence              5999999999864   5566667766654    37899999999997532    1233333332        346999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhcc
Q 030233          158 CSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +||++|+|++++|+++.+.+.++
T Consensus       148 ~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          148 LSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             EEecCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999887654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.94  E-value=3.8e-27  Score=161.47  Aligned_cols=159  Identities=21%  Similarity=0.369  Sum_probs=120.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCcccee--EEEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFN--VEAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ...++|+++|++|+|||||++++++..+. .+.++.+..  ...+.+.+  ..+.+||++|++.+...+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            34689999999999999999999998754 344565543  34455554  56789999999988888888889999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|+|+.++.++.....|+..+... ...+.|+++++||+|+...  ...++.....     ...++.++++||+++.|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~~d~Sal~~~~i~  156 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVE  156 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence            999999998888887787665432 2247899999999998642  2223322221     2244579999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|+++.+.+.+
T Consensus       157 ~l~~~l~~~~~~  168 (199)
T 2f9l_A          157 EAFKNILTEIYR  168 (199)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.3e-28  Score=174.74  Aligned_cols=161  Identities=12%  Similarity=0.102  Sum_probs=111.0

Q ss_pred             CCCccEEEEEcCC---------CCChHHHHHhhhcC---Cc-ccccCcc-ceeE--EE----------------EEECCe
Q 030233           14 PQCRIKLLMVGLD---------ASGKTTILYKMKLG---EI-VTTTPTI-GFNV--EA----------------VEYKNK   61 (181)
Q Consensus        14 ~~~~~~i~~~G~~---------~~GKssl~~~~~~~---~~-~~~~~~~-~~~~--~~----------------~~~~~~   61 (181)
                      +++.+||+++|++         |+|||||+++++++   .+ ..+.+|. +...  ..                +.....
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            4567999999999         99999999999984   33 3333432 1110  00                122457


Q ss_pred             EEEEEE-----------------------cCCChhhHHHHHhhcc---------------------CCCEEEEEEECCCc
Q 030233           62 SFCVWD-----------------------VGGQNKIRALWRHYFR---------------------DTLGLTFVVDSSDR   97 (181)
Q Consensus        62 ~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~~   97 (181)
                      .+.+||                       ++|++.+...+..+++                     ++|++++|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            889999                       5566666666666666                     69999999999998


Q ss_pred             --ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233           98 --ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus        98 --~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                        +++..+..|+..+.......++|+++|+||+|+......++......    ...+++++++||++|.|++++|++|.+
T Consensus       176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL----SKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHH----TSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHH----hcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence              99999999988876542225799999999999865222222221111    113557999999999999999999998


Q ss_pred             hhh
Q 030233          176 NIS  178 (181)
Q Consensus       176 ~~~  178 (181)
                      .+.
T Consensus       252 ~l~  254 (255)
T 3c5h_A          252 LID  254 (255)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.94  E-value=6.8e-27  Score=177.41  Aligned_cols=159  Identities=15%  Similarity=0.116  Sum_probs=115.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCC----------hhhHHHHH-h
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQ----------NKIRALWR-H   80 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~-~   80 (181)
                      ..++|+++|.+|+|||||+|++++.......+..++    ....+...+..+.+|||||+          +.|...+. .
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~  253 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK  253 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence            458999999999999999999999875433332232    23346668889999999997          56665544 4


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEe
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSC  158 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      +++.+|++++|+|++++.+++.. .|+..+..    .+.|+++|+||+|+.+...  .+++.+............+++++
T Consensus       254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (436)
T 2hjg_A          254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM  328 (436)
T ss_dssp             HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence            77889999999999988887664 35544433    4799999999999976443  23343333222222345589999


Q ss_pred             eccCCCCHHHHHHHHHhhhhc
Q 030233          159 SAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ||++|+|++++|+.+.+.+.+
T Consensus       329 SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          329 SALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             CTTTCTTGGGHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHHHHHHHHHH
Confidence            999999999999999887653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=2.4e-26  Score=166.39  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=112.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChh--------hHHHHHhhcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNK--------IRALWRHYFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~   83 (181)
                      +..+|+++|.+|+|||||+|++++..+....+.++++    ...+...+.++.+|||||..+        +......+++
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~   85 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   85 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence            4567999999999999999999998765333322222    223445789999999999765        5666778899


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      .+|++++|+|++++.+..  ..++...+.... ++.|+++|+||+|+.+... ..+....+      ....+++++||++
T Consensus        86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~  156 (301)
T 1wf3_A           86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD  156 (301)
T ss_dssp             SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred             cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence            999999999998764433  455544444321 4799999999999875322 11222221      1233699999999


Q ss_pred             CCCHHHHHHHHHhhhhc
Q 030233          163 GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (181)
                      |.|++++++.+.+.+.+
T Consensus       157 g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          157 ERQVAELKADLLALMPE  173 (301)
T ss_dssp             HHHHHHHHHHHHTTCCB
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999987654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=1.1e-25  Score=159.75  Aligned_cols=150  Identities=20%  Similarity=0.255  Sum_probs=108.8

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccC--ccceeEEEEEECCeEEEEEEcCCChhhHH------HHHhhc--
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTP--TIGFNVEAVEYKNKSFCVWDVGGQNKIRA------LWRHYF--   82 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--   82 (181)
                      +++.++|+++|++|+|||||+|++++..+. ...+  |.......+...+..+.+|||||...+..      ....++  
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            456789999999999999999999987743 2222  23333444556789999999999765542      334444  


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEe
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSC  158 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      ..+|++++|+|+++.++.   ..++..+..    .+.|+++|+||+|+...    .+.+.+.+.+        +++++++
T Consensus        82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~  146 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFT  146 (258)
T ss_dssp             SCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEEC
T ss_pred             cCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEE
Confidence            589999999999886543   335555544    37999999999997432    1233344333        3479999


Q ss_pred             eccCCCCHHHHHHHHHhhhh
Q 030233          159 SAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ||++|.|++++|+++.+.+.
T Consensus       147 SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          147 SSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCcCHHHHHHHHHHHhh
Confidence            99999999999999988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=7e-27  Score=167.37  Aligned_cols=150  Identities=17%  Similarity=0.155  Sum_probs=107.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccC--ccceeEEEEEECCeEEEEEEcCCChhhH----------HHHHhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTP--TIGFNVEAVEYKNKSFCVWDVGGQNKIR----------ALWRHY   81 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~~~   81 (181)
                      |++++|+++|.+|+|||||+|++++.... ...+  |.......+...+..+.+|||||...+.          ..+..+
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            35789999999999999999999988742 1222  2233344455678899999999976544          223333


Q ss_pred             c--cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhhCccccCCccEEE
Q 030233           82 F--RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM----PTAEVADKLELYSLGQRRWSI  155 (181)
Q Consensus        82 ~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~  155 (181)
                      +  +.+|++++|+|+++.++......++.   .    .+.|+++|+||+|+.+..    ..+.+.+.+        ++++
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~  145 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQLL---E----LGIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPV  145 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHHH---H----HTCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCE
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHHH---h----cCCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCE
Confidence            3  68999999999987554444333333   2    268999999999975422    223333332        3479


Q ss_pred             EEeeccCCCCHHHHHHHHHhhhhc
Q 030233          156 QSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +++||++|+|++++++++.+.+.+
T Consensus       146 i~~SA~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          146 IPLVSTRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             EECCCGGGHHHHHHHHHHHTCCCC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999987754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.93  E-value=2.5e-26  Score=156.43  Aligned_cols=156  Identities=21%  Similarity=0.371  Sum_probs=119.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeE--EEEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNV--EAVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ..++++++|++|||||||++++++..++ .+.+|.+.+.  ..+.+.+  ..+.+||++|.+++...+..+++.++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            3589999999999999999999998854 4566666543  3455555  456679999998888888888889999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |+|+.+..++..+..|+..+... ...+.|+++++||+|+.+.  ...+......     ....+.++++||+++.|+++
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence            99999988888877777665432 1247899999999998642  2222222221     23455799999999999999


Q ss_pred             HHHHHHhhh
Q 030233          169 GLDWLSNNI  177 (181)
Q Consensus       169 l~~~i~~~~  177 (181)
                      +|+.+.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=1.8e-26  Score=163.56  Aligned_cols=144  Identities=17%  Similarity=0.130  Sum_probs=104.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccC--ccceeEEEEEECCeEEEEEEcCCChhhHH----------HHHhhc--
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTP--TIGFNVEAVEYKNKSFCVWDVGGQNKIRA----------LWRHYF--   82 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~~--   82 (181)
                      .+|+++|.+|+|||||+|++.+.... ...|  |.......+.+.+..+.+|||||...+..          ....++  
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            47999999999999999999988632 2222  23344555667888999999999765542          455666  


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhhCccccCCccEEEEEe
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM----PTAEVADKLELYSLGQRRWSIQSC  158 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      +.+|++++|+|+++.++....   ...+ ..   .+.|+++|+||+|+....    ..+.+.+.+        +++++++
T Consensus        82 ~~~d~vi~VvDas~~~~~~~l---~~~l-~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~  146 (256)
T 3iby_A           82 LEYDCIINVIDACHLERHLYL---TSQL-FE---LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPI  146 (256)
T ss_dssp             SCCSEEEEEEEGGGHHHHHHH---HHHH-TT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEEC
T ss_pred             CCCCEEEEEeeCCCchhHHHH---HHHH-HH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEE
Confidence            889999999999875544332   2222 22   378999999999975422    223333333        3479999


Q ss_pred             eccCCCCHHHHHHHHHhh
Q 030233          159 SAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~  176 (181)
                      ||++|+|++++|+++.+.
T Consensus       147 SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          147 QAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             BGGGTBSHHHHHHHHHTC
T ss_pred             ECCCCCCHHHHHHHHHhh
Confidence            999999999999999876

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.93  E-value=2.1e-25  Score=167.71  Aligned_cols=164  Identities=14%  Similarity=0.040  Sum_probs=115.6

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE-----------------------EEECCeEEEEEEcC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA-----------------------VEYKNKSFCVWDVG   69 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~i~d~~   69 (181)
                      ..+..++|+++|++++|||||++++++............+...                       .......+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            3466899999999999999999999985432211000000000                       00112689999999


Q ss_pred             CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc--cc
Q 030233           70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL--YS  147 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~--~~  147 (181)
                      |++++.......+..+|++++|+|+++..++....+++..+...   ...|+++|+||+|+.+....++..+.+..  ..
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999876677777776655433   23689999999999763322222222111  11


Q ss_pred             cCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          148 LGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ......+++++||++|+|+++++++|.+.+..
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            12346689999999999999999999987643

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.93  E-value=2.8e-25  Score=169.32  Aligned_cols=154  Identities=15%  Similarity=0.115  Sum_probs=96.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCc----cceeEEEEEECCeEEEEEEcCCChhhHHHH--------Hhhcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPT----IGFNVEAVEYKNKSFCVWDVGGQNKIRALW--------RHYFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~--------~~~~~   83 (181)
                      ..++|+++|.+|+|||||+|++++.......+.    .......+.+.+..+.+|||||...+...+        ..+++
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~  311 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA  311 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence            468999999999999999999998863322222    233344567789999999999987765433        34678


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      .+|++++|+|++++.++.....+..-+...   .+.|+++|+||+|+.+....+.  +.+...    ...+++++||++|
T Consensus       312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~vSAktg  382 (476)
T 3gee_A          312 EADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGISALNG  382 (476)
T ss_dssp             SCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEECBTTTT
T ss_pred             cCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEEEECCC
Confidence            899999999999987775332222222112   2689999999999976443322  111110    1136999999999


Q ss_pred             CCHHHHHHHHHhhhh
Q 030233          164 QGLYEGLDWLSNNIS  178 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~  178 (181)
                      +|+++++++|.+.+.
T Consensus       383 ~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          383 DGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BSHHHHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.93  E-value=1.1e-25  Score=171.68  Aligned_cols=160  Identities=16%  Similarity=0.152  Sum_probs=113.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccc----eeEEEEEECCeEEEEEEcCC----------ChhhHHHHH-
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG----FNVEAVEYKNKSFCVWDVGG----------QNKIRALWR-   79 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~g----------~~~~~~~~~-   79 (181)
                      ...++|+++|.+++|||||+|++++.......+..+    .....+...+..+.+|||||          ++.+...+. 
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            356899999999999999999999876333222222    22345667888999999999          677777655 


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEE
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      .+++.+|++++|+|+++..+  ....++...+..   .+.|+++|+||+|+.+...  .+++.+............++++
T Consensus       273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            47789999999999986533  333333333333   4799999999999975332  2333333322221223457999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhc
Q 030233          158 CSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +||++|+|++++|+++.+.+.+
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999987654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=3.5e-25  Score=168.03  Aligned_cols=151  Identities=21%  Similarity=0.295  Sum_probs=101.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE----EECCeEEEEEEcCCCh--------hhHHHHHhhccC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV----EYKNKSFCVWDVGGQN--------KIRALWRHYFRD   84 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~   84 (181)
                      .++|+++|.+|+|||||+|++++.......+++|++....    .+.+..+.+|||||.+        .+...+..+++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            4689999999999999999999887665666667654432    3367789999999975        677778889999


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      +|++++|+|+.++.+..  ..++..+++.   .+.|+++|+||+|+.+...  +.   ....  ....-.++++||++|.
T Consensus        83 ad~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~---~~~~--~lg~~~~~~iSA~~g~  150 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI---YDFY--SLGFGEPYPISGTHGL  150 (436)
T ss_dssp             CSEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CC---CSSG--GGSSCCCEECBTTTTB
T ss_pred             CCEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--hH---HHHH--HcCCCCeEEEeCcCCC
Confidence            99999999998765543  3456565554   5789999999999865311  11   1111  1111158999999999


Q ss_pred             CHHHHHHHHHhhhhc
Q 030233          165 GLYEGLDWLSNNISV  179 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~  179 (181)
                      |++++++++.+.+.+
T Consensus       151 gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          151 GLGDLLDAVAEHFKN  165 (436)
T ss_dssp             THHHHHHHHHHTGGG
T ss_pred             ChHHHHHHHHHhcCc
Confidence            999999999988753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=4.4e-25  Score=157.55  Aligned_cols=148  Identities=18%  Similarity=0.212  Sum_probs=104.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEEEEEEC-CeEEEEEEcCCChhhH------HHHHhhcc--CC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEYK-NKSFCVWDVGGQNKIR------ALWRHYFR--DT   85 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~i~d~~g~~~~~------~~~~~~~~--~~   85 (181)
                      ..++|+++|++|+|||||+|++++.. .....|...+......+. +..+.+|||||...+.      .....++.  .+
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~   81 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA   81 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence            35799999999999999999999875 222222222222222222 6789999999987664      45556665  69


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC----CCHHHHHhhhCccccCCccEEEEEeecc
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV----MPTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      |++++|+|+++.++.   ..|...+..    .+.|+++|+||+|+...    ...+.+.+.+        +++++++||+
T Consensus        82 d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA~  146 (272)
T 3b1v_A           82 DSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSAL  146 (272)
T ss_dssp             SEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBTT
T ss_pred             CEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEcc
Confidence            999999999875443   344444443    37899999999997431    2233343333        3479999999


Q ss_pred             CCCCHHHHHHHHHhhhh
Q 030233          162 SGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~~  178 (181)
                      +|+|++++|+++.+.+.
T Consensus       147 ~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          147 KQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TTBSHHHHHHHHHHSCT
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=4.3e-25  Score=171.44  Aligned_cols=158  Identities=20%  Similarity=0.266  Sum_probs=110.5

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEE--------E----CCeEEEEEEcCCChhhHHHHH
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVE--------Y----KNKSFCVWDVGGQNKIRALWR   79 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~--------~----~~~~~~i~d~~g~~~~~~~~~   79 (181)
                      .+.+.+||+++|.+|+|||||++++.+..+ ....+|.+.+.....        .    ....+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            456789999999999999999999998875 445677776665432        1    258999999999999999888


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEE
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      .+++.+|++++|+|+++.+.   ...|+..+....  ++.|+++|+||+|+.+..  ..+++.....     ..+.++++
T Consensus       117 ~~l~~~d~ii~V~D~s~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~  186 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHR  186 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEE
T ss_pred             HHccCCcEEEEEEeCCCchh---HHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEE
Confidence            89999999999999976544   445555554432  368999999999997533  3334444332     23346999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhcc
Q 030233          158 CSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +||++|.|++++++.+.+.+.+.
T Consensus       187 vSA~~g~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          187 ISCKNGDGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             CCC-----CTTHHHHHHHHHTCT
T ss_pred             EecCcccCHHHHHHHHHHHHhcc
Confidence            99999999999999999887653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=1.8e-26  Score=160.16  Aligned_cols=119  Identities=24%  Similarity=0.370  Sum_probs=95.3

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCccc----ccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccC----C
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVT----TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRD----T   85 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~   85 (181)
                      ..+.++|+++|++|+|||||++++++..+..    ..++.+...     ....+.+|||||++.+...+..+++.    +
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   83 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV   83 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence            3467899999999999999999999887543    233332221     56688999999999998888888877    8


Q ss_pred             CEEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHH
Q 030233           86 LGLTFVVDSS-DRERISEARNELHQILSDN---ELSNAALLVFANKQDLPNVMPTA  137 (181)
Q Consensus        86 d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~~~  137 (181)
                      |++++|+|++ +++++.....|+..++...   ...+.|+++|+||+|+.......
T Consensus        84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~  139 (218)
T 1nrj_B           84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS  139 (218)
T ss_dssp             EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred             CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence            9999999999 8899999999888876532   22579999999999998765533

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.92  E-value=1.4e-24  Score=164.78  Aligned_cols=150  Identities=22%  Similarity=0.244  Sum_probs=102.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCChh---------hHHHHHhhccC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQNK---------IRALWRHYFRD   84 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~   84 (181)
                      .+|+++|.+|+|||||+|++++.......+++++    ....+.+.+..+.+|||||.+.         +..++..+++.
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            4799999999999999999998874433344443    3456677889999999999653         45677889999


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHH-HhhhCccccCCccEEEEEeeccCC
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEV-ADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      +|++++|+|+.+..+..  ..++...++.   .+.|+++|+||+|+.+.. ..+. .+...   .+.  .+++++||++|
T Consensus        82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~---lg~--~~~~~iSA~~g  150 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS---LGF--GEPIPVSAEHN  150 (439)
T ss_dssp             CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG---GSS--CSCEECBTTTT
T ss_pred             CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh---cCC--CCEEEEeccCC
Confidence            99999999998654432  2333333332   368999999999975310 1111 12111   111  14799999999


Q ss_pred             CCHHHHHHHHHhhhh
Q 030233          164 QGLYEGLDWLSNNIS  178 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~  178 (181)
                      .|++++++++.+.+.
T Consensus       151 ~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          151 INLDTMLETIIKKLE  165 (439)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcc
Confidence            999999999988775

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=9.9e-24  Score=150.93  Aligned_cols=151  Identities=20%  Similarity=0.190  Sum_probs=109.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccC--ccceeEEEEEECCeEEEEEEcCCChhhHH------HHHhhc--c
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTP--TIGFNVEAVEYKNKSFCVWDVGGQNKIRA------LWRHYF--R   83 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~   83 (181)
                      ++.++|+++|++|+|||||+|++++..+. ...+  +.......+.+.+..+.+|||||...+..      ....++  .
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            35689999999999999999999988752 2223  23334445666888999999999766543      455555  6


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC----CCCHHHHHhhhCccccCCccEEEEEee
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN----VMPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      .+|++++|+|+++.   .....++..+...   ...|+++|+||+|+.+    ....+.+.+.+        +++++++|
T Consensus        81 ~~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~S  146 (271)
T 3k53_A           81 NADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTN  146 (271)
T ss_dssp             CCSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECB
T ss_pred             CCcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEE
Confidence            89999999999864   3334445555443   2399999999999643    12334444443        24699999


Q ss_pred             ccCCCCHHHHHHHHHhhhhc
Q 030233          160 AISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~  179 (181)
                      |++|.|++++|+.+.+.+.+
T Consensus       147 a~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          147 AKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             GGGTBTHHHHHHHHHHHHHT
T ss_pred             eCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999887654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.92  E-value=5.7e-24  Score=157.59  Aligned_cols=158  Identities=15%  Similarity=0.138  Sum_probs=115.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEECCeEEEEEEcCCChhh---------HHHHHhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYKNKSFCVWDVGGQNKI---------RALWRHYF   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~---------~~~~~~~~   82 (181)
                      ...++++++|.+|+|||||+|++++.....   ...|.......+...+..+.+|||||....         ........
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            456899999999999999999999877321   123445555566667889999999996432         11222445


Q ss_pred             cCCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           83 RDTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      ..+|++++|+|++++.  ++.....++..+....  .+.|+++|+||+|+......++.....     ...+.+++++||
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA  317 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA  317 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence            5799999999998876  6777777877776532  278999999999987632222222221     123457999999


Q ss_pred             cCCCCHHHHHHHHHhhhhc
Q 030233          161 ISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++|+|++++++++.+.+..
T Consensus       318 ~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          318 LKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTTBTHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999987753

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.92  E-value=7.3e-24  Score=153.97  Aligned_cols=134  Identities=21%  Similarity=0.314  Sum_probs=108.6

Q ss_pred             CccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 030233           47 PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS----------DRERISEARNELHQILSDNEL  116 (181)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~  116 (181)
                      +|.|+....+...+..+++|||+|++.++..|..++++++++|+|+|++          +..++.+...|+..+......
T Consensus       153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~  232 (327)
T 3ohm_A          153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF  232 (327)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence            3567777778889999999999999999999999999999999999664          678899999999999888777


Q ss_pred             CCCeEEEEEeCCCCCC------------------CCCHHHHHhhh-----CccccCCccEEEEEeeccCCCCHHHHHHHH
Q 030233          117 SNAALLVFANKQDLPN------------------VMPTAEVADKL-----ELYSLGQRRWSIQSCSAISGQGLYEGLDWL  173 (181)
Q Consensus       117 ~~~piilv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  173 (181)
                      .+.|+++++||+|+..                  ..+.++..+.+     .........+.++++||++++||+.+|+.+
T Consensus       233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v  312 (327)
T 3ohm_A          233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAV  312 (327)
T ss_dssp             TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHH
Confidence            7899999999999853                  12333333321     111124467889999999999999999999


Q ss_pred             Hhhhhcc
Q 030233          174 SNNISVK  180 (181)
Q Consensus       174 ~~~~~~~  180 (181)
                      .+.+.++
T Consensus       313 ~~~Il~~  319 (327)
T 3ohm_A          313 KDTILQL  319 (327)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9988764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=2.2e-24  Score=158.80  Aligned_cols=133  Identities=23%  Similarity=0.348  Sum_probs=107.2

Q ss_pred             ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 030233           48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----------RERISEARNELHQILSDNELS  117 (181)
Q Consensus        48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~  117 (181)
                      |.|+....+.+.+..+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...|+..+.......
T Consensus       180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~  259 (353)
T 1cip_A          180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT  259 (353)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred             eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence            5566666777789999999999999999999999999999999999998          567999999999998876667


Q ss_pred             CCeEEEEEeCCCCCC-----------------CCCHHHHHhhhC-----cccc-CCccEEEEEeeccCCCCHHHHHHHHH
Q 030233          118 NAALLVFANKQDLPN-----------------VMPTAEVADKLE-----LYSL-GQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus       118 ~~piilv~nK~D~~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      +.|+++++||+|+..                 ..+.++......     .... ....+.+++|||++|+||+++|+++.
T Consensus       260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~  339 (353)
T 1cip_A          260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT  339 (353)
T ss_dssp             TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence            899999999999842                 123444333322     1100 13578899999999999999999999


Q ss_pred             hhhhcc
Q 030233          175 NNISVK  180 (181)
Q Consensus       175 ~~~~~~  180 (181)
                      +.+.++
T Consensus       340 ~~i~~~  345 (353)
T 1cip_A          340 DVIIKN  345 (353)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=1.1e-24  Score=166.15  Aligned_cols=154  Identities=23%  Similarity=0.305  Sum_probs=104.1

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE----EECCeEEEEEEcCC--------ChhhHHHHHh
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV----EYKNKSFCVWDVGG--------QNKIRALWRH   80 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~d~~g--------~~~~~~~~~~   80 (181)
                      ..+...+|+++|.+|||||||+|++++.......+++|++....    .+.+..+.+|||||        ++.+...+..
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            34567899999999999999999999987665566666665433    23677899999999        7778888899


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      +++.+|++++|+|..+  ++.....++...+..   .+.|+++|+||+|+....  ....+...   .+..  .++++||
T Consensus        99 ~~~~ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~---lg~~--~~~~iSA  166 (456)
T 4dcu_A           99 AMDEADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS---LGFG--EPYPISG  166 (456)
T ss_dssp             HHHHCSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG---GSSS--SEEECCT
T ss_pred             hHhhCCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH---cCCC--ceEEeec
Confidence            9999999999999865  344555666666665   579999999999986421  11111111   1111  3679999


Q ss_pred             cCCCCHHHHHHHHHhhhh
Q 030233          161 ISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~  178 (181)
                      ++|.|+.++++.+.+.+.
T Consensus       167 ~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          167 THGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TTCTTHHHHHHHHHTTGG
T ss_pred             ccccchHHHHHHHHhhcc
Confidence            999999999999988765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=1.9e-24  Score=158.56  Aligned_cols=156  Identities=23%  Similarity=0.292  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-eEEEEEEcCCChh----hHHHHHhh---ccCCCE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-KSFCVWDVGGQNK----IRALWRHY---FRDTLG   87 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~i~d~~g~~~----~~~~~~~~---~~~~d~   87 (181)
                      +|+++|.+++|||||++++++..+.  .+ ..|...+...+.+.+ ..+.+|||||...    +..+...+   ++.+++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~  239 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV  239 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence            6899999999999999999987632  21 234445555566654 7999999999533    22233333   345999


Q ss_pred             EEEEEECCC---cccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccC
Q 030233           88 LTFVVDSSD---RERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        88 ii~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      +++|+|+++   +++++....|...+.... ...+.|+++|+||+|+..... .+++.+.+.      ...+++++||++
T Consensus       240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~------~~~~v~~iSA~t  313 (342)
T 1lnz_A          240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT------DDYPVFPISAVT  313 (342)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC------SCCCBCCCSSCC
T ss_pred             EEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh------cCCCEEEEECCC
Confidence            999999998   788888888887776542 235799999999999875211 122222221      114699999999


Q ss_pred             CCCHHHHHHHHHhhhhcc
Q 030233          163 GQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~~  180 (181)
                      ++|+++++++|.+.+.+.
T Consensus       314 g~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          314 REGLRELLFEVANQLENT  331 (342)
T ss_dssp             SSTTHHHHHHHHHHHTSC
T ss_pred             CcCHHHHHHHHHHHHhhC
Confidence            999999999999988653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=7.9e-25  Score=164.41  Aligned_cols=152  Identities=15%  Similarity=0.146  Sum_probs=107.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECCe-EEEEEEcCCChhhHHH-------HHhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKNK-SFCVWDVGGQNKIRAL-------WRHYF   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~i~d~~g~~~~~~~-------~~~~~   82 (181)
                      ...++|+++|++++|||||++++++..+....    .|.......+.+.+. .+.+|||||++++...       ...++
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l  111 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF  111 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence            35689999999999999999999988754322    233344455666544 9999999998765432       45678


Q ss_pred             cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccC
Q 030233           83 RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        83 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      ..+|++++|+|+...   .....|+..+.+.    +.|+++|+||+|+......+ ..+.+.    ...+.+++++||++
T Consensus       112 ~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~~-~~~~l~----~~~g~~v~~vSAkt  179 (423)
T 3qq5_A          112 YRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAEE-LKGLYE----SRYEAKVLLVSALQ  179 (423)
T ss_dssp             TSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCTH-HHHHSS----CCTTCCCCCCSSCC
T ss_pred             hcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHHH-HHHHHH----HHcCCCEEEEECCC
Confidence            899999999999332   2344555555443    78999999999998755542 223222    23345899999999


Q ss_pred             CCCHHHHHHHHHhhhh
Q 030233          163 GQGLYEGLDWLSNNIS  178 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~  178 (181)
                      |+|++++|++|.+.+.
T Consensus       180 g~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          180 KKGFDDIGKTISEILP  195 (423)
T ss_dssp             TTSTTTHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999999874

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.91  E-value=6.6e-23  Score=154.35  Aligned_cols=159  Identities=15%  Similarity=0.079  Sum_probs=103.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc----c--ccCccceeEEEEEE---------------C--------CeEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV----T--TTPTIGFNVEAVEY---------------K--------NKSFCV   65 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~----~--~~~~~~~~~~~~~~---------------~--------~~~~~i   65 (181)
                      +..++|+++|+.++|||||++++.+....    +  ...|....+.....               .        ...+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            45789999999999999999999865321    1  12244433332221               1        168999


Q ss_pred             EEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHHh
Q 030233           66 WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVAD  141 (181)
Q Consensus        66 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~  141 (181)
                      |||||+++|.......+..+|++++|+|+++........+.+..+...   ...|+++++||+|+.....    .+++.+
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~  162 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE  162 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence            999999999988888888899999999998643122222222222222   2358999999999976432    233344


Q ss_pred             hhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          142 KLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      .+...  .....+++++||++|+|+++++++|.+.+.
T Consensus       163 ~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          163 FVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            33221  224568999999999999999999998664

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=5.5e-24  Score=162.36  Aligned_cols=149  Identities=21%  Similarity=0.263  Sum_probs=111.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECCeEEEEEEcCCCh-hhH--------HHHHhhcc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKNKSFCVWDVGGQN-KIR--------ALWRHYFR   83 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~d~~g~~-~~~--------~~~~~~~~   83 (181)
                      .++|+++|.+|+|||||+|++++.......    .|.......+.+.+..+.+|||||.. .+.        .....+++
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~  322 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE  322 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence            489999999999999999999987633222    23344456677789999999999987 432        23446778


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      .+|++++|+|++++.++.... .+.. +     .+.|+++|+||+|+.+..+.+++.....      ...+++++||++|
T Consensus       323 ~aD~vl~VvD~s~~~s~~~~~-il~~-l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg  389 (482)
T 1xzp_A          323 KADIVLFVLDASSPLDEEDRK-ILER-I-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKG  389 (482)
T ss_dssp             HCSEEEEEEETTSCCCHHHHH-HHHH-H-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGT
T ss_pred             cccEEEEEecCCCCCCHHHHH-HHHH-h-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCC
Confidence            899999999999887775532 2332 2     3689999999999976545455444321      2235899999999


Q ss_pred             CCHHHHHHHHHhhhh
Q 030233          164 QGLYEGLDWLSNNIS  178 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~  178 (181)
                      +|+++++++|.+.+.
T Consensus       390 ~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          390 EGLEKLEESIYRETQ  404 (482)
T ss_dssp             CCHHHHHHHHHHHTH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=7.1e-24  Score=160.97  Aligned_cols=159  Identities=16%  Similarity=0.123  Sum_probs=107.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCcccee----EEEEEECCeEEEEEEcCCChhhHHH------------HH
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNKIRAL------------WR   79 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~d~~g~~~~~~~------------~~   79 (181)
                      ..++++++|++|+|||||+|++++.......+..+++    ...+.+.+..+.+|||||.......            ..
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~  258 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV  258 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence            3589999999999999999999988754333333332    3456678889999999997543221            13


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEE
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      .+++.+|++++|+|+.+..+...  .++...+..   .+.|+++|+||+|+.+...  .+++.+............++++
T Consensus       259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (439)
T 1mky_A          259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  333 (439)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence            45677999999999987666543  233333333   4789999999999875322  3333333222111223457999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhc
Q 030233          158 CSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +||++|.|++++|+.+.+.+.+
T Consensus       334 ~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          334 TSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999876644

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.91  E-value=4.8e-24  Score=163.25  Aligned_cols=160  Identities=17%  Similarity=0.103  Sum_probs=111.2

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC----cc------cccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE----IV------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR   83 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   83 (181)
                      +++.++|+++|++++|||||++++.+..    ..      ....|.......+.+.+..+.+|||||+++|.......+.
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence            4568999999999999999999999876    11      1123445555556678899999999999999999999999


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc--c-CCccEEEEEeec
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS--L-GQRRWSIQSCSA  160 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~Sa  160 (181)
                      .+|++++|+|+++... ....+.+..+ ..   .++|+++++||+|+.+....+.+.+.+....  . .....+++++||
T Consensus        96 ~aD~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA  170 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  170 (482)
T ss_dssp             SCCEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hCCEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence            9999999999987321 1122222222 22   3678899999999976322222222221110  0 122568999999


Q ss_pred             cCCCCHHHHHHHHHhhhh
Q 030233          161 ISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~  178 (181)
                      ++|+|+++++++|.+.+.
T Consensus       171 ~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          171 KTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhhc
Confidence            999999999999998653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.91  E-value=1.8e-23  Score=151.52  Aligned_cols=156  Identities=18%  Similarity=0.128  Sum_probs=107.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccce----eEEEEEECCeEEEEEEcCCCh-hhH--------HHHHhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF----NVEAVEYKNKSFCVWDVGGQN-KIR--------ALWRHY   81 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~d~~g~~-~~~--------~~~~~~   81 (181)
                      .+..+|+++|++|+|||||+|++++.......+.+++    ....+...+..+.+|||||.+ ...        ......
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            3456899999999999999999999875433322222    223455678899999999987 322        123456


Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCcc-EEEEEeec
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRR-WSIQSCSA  160 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa  160 (181)
                      ++.+|++++|+|+++   +.....++...+..   .+.|+++++||+|+...  ...+.+..... ....+ ..++++||
T Consensus        86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l-~~~~~~~~~i~iSA  156 (301)
T 1ega_A           86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQFL-ASQMNFLDIVPISA  156 (301)
T ss_dssp             CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHHH-HTTSCCSEEEECCT
T ss_pred             HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHHH-HHhcCcCceEEEEC
Confidence            678899999999976   33344455544443   47899999999998751  22222221110 01112 26999999


Q ss_pred             cCCCCHHHHHHHHHhhhhc
Q 030233          161 ISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++|.|++++++.+.+.+.+
T Consensus       157 ~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          157 ETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             TTTTTHHHHHHHHHTTCCB
T ss_pred             CCCCCHHHHHHHHHHhCCc
Confidence            9999999999999987654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.90  E-value=2.2e-23  Score=151.98  Aligned_cols=133  Identities=23%  Similarity=0.300  Sum_probs=106.2

Q ss_pred             CccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCC
Q 030233           47 PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS----------DRERISEARNELHQILSDNEL  116 (181)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~  116 (181)
                      +|.|+....+...+..+++|||+|++.++..|..++++++++|+|+|++          +..++.+...|+..++.....
T Consensus       147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~  226 (340)
T 4fid_A          147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL  226 (340)
T ss_dssp             CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred             ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence            3567777778888999999999999999999999999999999999998          678999999999999988777


Q ss_pred             CCCeEEEEEeCCCCCCC-----------------CCHHHHHhhhCccc-----------cCC-----------ccEEEEE
Q 030233          117 SNAALLVFANKQDLPNV-----------------MPTAEVADKLELYS-----------LGQ-----------RRWSIQS  157 (181)
Q Consensus       117 ~~~piilv~nK~D~~~~-----------------~~~~~~~~~~~~~~-----------~~~-----------~~~~~~~  157 (181)
                      .+.|+++++||+|+..+                 ...++..+.+....           ...           +.+.+++
T Consensus       227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~  306 (340)
T 4fid_A          227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP  306 (340)
T ss_dssp             TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred             CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence            88999999999997531                 12222222111111           111           4688999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhc
Q 030233          158 CSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +||+++.||+.+|+.+.+.+.+
T Consensus       307 TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          307 TNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             ECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeeCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999887653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.90  E-value=1.7e-23  Score=159.01  Aligned_cols=150  Identities=16%  Similarity=0.132  Sum_probs=100.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccccc--C--ccceeEEEEEECCeEEEEEEcCCChhhHHHHH--------hhcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTT--P--TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR--------HYFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~--------~~~~   83 (181)
                      ..++|+++|++|+|||||+|++++.......  +  |..+....+.+.+..+.+|||||...+.....        ..+.
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~  302 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN  302 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence            4588999999999999999999986533222  2  22233345667889999999999766543322        3567


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCC
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISG  163 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (181)
                      .+|++++|+|++++.+... ..++..+      ...|+++|+||+|+.+.....   . .  ... ....+++++||++|
T Consensus       303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~---~-~--~~~-~~~~~~i~iSAktg  368 (462)
T 3geh_A          303 TADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT---S-L--EYP-ENITQIVHTAAAQK  368 (462)
T ss_dssp             SCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST---T-C--CCC-TTCCCEEEEBTTTT
T ss_pred             cCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH---H-H--HHh-ccCCcEEEEECCCC
Confidence            8999999999998766544 3344433      236999999999987632221   1 1  100 13457999999999


Q ss_pred             CCHHHHHHHHHhhhhc
Q 030233          164 QGLYEGLDWLSNNISV  179 (181)
Q Consensus       164 ~~i~~l~~~i~~~~~~  179 (181)
                      +|+++++++|.+.+..
T Consensus       369 ~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          369 QGIDSLETAILEIVQT  384 (462)
T ss_dssp             BSHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999988754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.90  E-value=3.3e-23  Score=156.13  Aligned_cols=160  Identities=16%  Similarity=0.115  Sum_probs=108.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCc----cc--ccCccceeEEEEEE---------------C--------CeEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEI----VT--TTPTIGFNVEAVEY---------------K--------NKSFC   64 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~----~~--~~~~~~~~~~~~~~---------------~--------~~~~~   64 (181)
                      .+..++|+++|++++|||||++++.+...    .+  ...|....+....+               .        ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            45578999999999999999999986431    11  12255443333222               0        16899


Q ss_pred             EEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHH
Q 030233           65 VWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVA  140 (181)
Q Consensus        65 i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~  140 (181)
                      +|||||+++|.......+..+|++++|+|+++........+.+..+...   ...|+++++||+|+.+...    .+++.
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~  163 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK  163 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence            9999999999888888888999999999998642122222222222111   2368999999999876321    12222


Q ss_pred             hhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          141 DKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      +.+...  .....+++++||++|+|+++++++|.+.+.
T Consensus       164 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          164 EFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            222211  124568999999999999999999998664

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.90  E-value=9.8e-23  Score=157.16  Aligned_cols=114  Identities=16%  Similarity=0.126  Sum_probs=88.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC------------------Cccc-------ccCccceeEEEEEECCeEEEEEEcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG------------------EIVT-------TTPTIGFNVEAVEYKNKSFCVWDVGG   70 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~------------------~~~~-------~~~~~~~~~~~~~~~~~~~~i~d~~g   70 (181)
                      +..+|+++|++++|||||+++++..                  ....       ...|.......+.+.+..+.+|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            4568999999999999999999621                  1111       23345556667788999999999999


Q ss_pred             ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233           71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM  134 (181)
Q Consensus        71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  134 (181)
                      +.++...+...++.+|++|+|+|+++..+.+....| ..+. .   .++|+++|+||+|+....
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~-~---~~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR-L---RHTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH-T---TTCCEEEEEECTTSCCSC
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH-H---cCCCEEEEEeCCCCcccc
Confidence            999999999999999999999999987665554433 3332 2   378999999999997543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.90  E-value=1.6e-22  Score=149.60  Aligned_cols=159  Identities=21%  Similarity=0.134  Sum_probs=106.1

Q ss_pred             ccE-EEEEcCCCCChHHHHHhhhcCCcc---cccCccceeEEEEEECCeEEEEEEcCCC---------hhhHHHHHhhcc
Q 030233           17 RIK-LLMVGLDASGKTTILYKMKLGEIV---TTTPTIGFNVEAVEYKNKSFCVWDVGGQ---------NKIRALWRHYFR   83 (181)
Q Consensus        17 ~~~-i~~~G~~~~GKssl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~d~~g~---------~~~~~~~~~~~~   83 (181)
                      .++ |+++|.+|+|||||+|++++....   ....|.+.....+.+.+..+.+|||+|.         +.+..... .+.
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~  256 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK  256 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence            355 999999999999999999987742   2345666667778888899999999996         23444433 567


Q ss_pred             CCCEEEEEEECCCcc--cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhh--hCccccCCccEEEEEe
Q 030233           84 DTLGLTFVVDSSDRE--RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-VADK--LELYSLGQRRWSIQSC  158 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~  158 (181)
                      .+|++++|+|++++.  .......+.. ++......+.|+++|+||+|+.+.. ... ....  +... ......+++++
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~~~~-~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~-l~~~~~~~~~~  333 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE-LYSPIFDVIPI  333 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHHHHH-HHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH-HCSCEEEEEEC
T ss_pred             hCCEEEEEEECCCCcchHHHHHHHHHH-HHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH-hcCCCCcEEEE
Confidence            899999999998875  3443333332 2222222578999999999987543 221 1111  0000 00124468999


Q ss_pred             eccCCCCHHHHHHHHHhhhhc
Q 030233          159 SAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       159 Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ||++|+|++++++.|.+.+..
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHHhcc
Confidence            999999999999999887653

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.89  E-value=4.2e-23  Score=153.14  Aligned_cols=146  Identities=7%  Similarity=0.020  Sum_probs=110.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      +|+++|++++|||||+++++     ....|.+.....+...+..+.+|||||+++|.......++.+|++++|+| + ..
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g   95 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG   95 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred             EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence            89999999999999999998     44556666666677788899999999999998888888899999999999 4 44


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeE-EEEEe-CCCCCCCCCHH----HHHhhhCccccCCccEEEEE--eeccC---CCCHH
Q 030233           99 RISEARNELHQILSDNELSNAAL-LVFAN-KQDLPNVMPTA----EVADKLELYSLGQRRWSIQS--CSAIS---GQGLY  167 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i~  167 (181)
                      .+....+++..+...    ++|. ++++| |+|+ +....+    ++.+.+...  ....+++++  +||++   |+|++
T Consensus        96 ~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~  168 (370)
T 2elf_A           96 LDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD  168 (370)
T ss_dssp             CCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred             CcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence            455555655554332    5666 88999 9998 422112    222222211  223568999  99999   99999


Q ss_pred             HHHHHHHhhhh
Q 030233          168 EGLDWLSNNIS  178 (181)
Q Consensus       168 ~l~~~i~~~~~  178 (181)
                      ++++.|.+.+.
T Consensus       169 ~L~~~l~~~~~  179 (370)
T 2elf_A          169 ELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhcc
Confidence            99999987754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.89  E-value=1.5e-22  Score=157.64  Aligned_cols=157  Identities=19%  Similarity=0.190  Sum_probs=109.7

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC--ccc----------------ccCccceeEEEEEEC-----CeEEEEEEcCCCh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE--IVT----------------TTPTIGFNVEAVEYK-----NKSFCVWDVGGQN   72 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~-----~~~~~i~d~~g~~   72 (181)
                      +..+|+++|+.++|||||+++++...  ...                ...|.......+.+.     ...+.+|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            34689999999999999999997521  110                111222222233332     3789999999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCcc
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRR  152 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  152 (181)
                      +|...+...++.+|++++|+|+++..+.+....|.... .    .++|+++|+||+|+.... .+.....+... .+...
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~  157 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDP  157 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCG
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCc
Confidence            99999999999999999999999887777766655443 2    378999999999997643 33322222111 11122


Q ss_pred             EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          153 WSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      .+++++||++|.|++++++++.+.+..
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             ccEEEEEeecCCCchHHHHHHHHhccc
Confidence            248999999999999999999988754

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.89  E-value=1.7e-22  Score=157.52  Aligned_cols=157  Identities=20%  Similarity=0.212  Sum_probs=106.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC--ccc----------------ccCccceeEEEEEEC-----CeEEEEEEcCCCh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE--IVT----------------TTPTIGFNVEAVEYK-----NKSFCVWDVGGQN   72 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~-----~~~~~i~d~~g~~   72 (181)
                      +..+|+++|+.++|||||+++++...  ...                ...|.......+.+.     ...+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            34689999999999999999998632  110                011222222234343     3789999999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCcc
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRR  152 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  152 (181)
                      +|...+...+..+|++++|+|+++..+.+....|.... .    .++|+++|+||+|+.... .+.....+... .+...
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~-lg~~~  155 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDI-VGIDA  155 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHH-TCCCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHH-hCCCc
Confidence            99999999999999999999999877776666655443 2    368999999999997643 33222222111 01111


Q ss_pred             EEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          153 WSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      .+++++||++|.|++++++++.+.+..
T Consensus       156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          156 TDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             ceEEEeecccCCCchhHHHHHhhcCCC
Confidence            248999999999999999999988754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.89  E-value=9e-23  Score=153.52  Aligned_cols=160  Identities=20%  Similarity=0.201  Sum_probs=112.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcC--------Ccc------------cccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLG--------EIV------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNK   73 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~--------~~~------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   73 (181)
                      .+..++|+++|++++|||||++++++.        .+.            ....|.......+...+..+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            346789999999999999999999873        111            112233343444555778999999999999


Q ss_pred             hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HH----HHHhhhCccc
Q 030233           74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMP-TA----EVADKLELYS  147 (181)
Q Consensus        74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~----~~~~~~~~~~  147 (181)
                      |.......+..+|++++|+|+++... ....+++..+..    .++| +++++||+|+.+... .+    ++.+.+....
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999987643 334455544433    2577 899999999975211 11    1222221111


Q ss_pred             cCCccEEEEEeeccCCCC------------------HHHHHHHHHhhhh
Q 030233          148 LGQRRWSIQSCSAISGQG------------------LYEGLDWLSNNIS  178 (181)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~------------------i~~l~~~i~~~~~  178 (181)
                      +.....+++++||++|.|                  ++++++.+.+.+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            111246899999999987                  8889998887654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.89  E-value=1.7e-23  Score=158.68  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=101.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC--Ccc--------------------------------cccCccceeEEEEEECC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG--EIV--------------------------------TTTPTIGFNVEAVEYKN   60 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~   60 (181)
                      +..++|+++|++++|||||++++++.  .+.                                ....|.......+...+
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45689999999999999999999864  221                                11234444455566688


Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHH-------HHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEAR-------NELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-------~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      ..+.+|||||+++|...+...+..+|++++|+|+++ .+|+...       +.+......   ...|+++++||+|+.+.
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence            899999999999999999999999999999999997 5565332       222222121   23468999999999763


Q ss_pred             C-CH---H----HHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233          134 M-PT---A----EVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus       134 ~-~~---~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      . +.   +    ++........+....++++++||++|+|+.++
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence            1 11   1    22222211111122468999999999999743

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.89  E-value=2.6e-22  Score=152.20  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=104.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEECC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYKN   60 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~~   60 (181)
                      +..++|+++|++++|||||+++|++..  ..                                ....|.......+...+
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            456899999999999999999996532  00                                01234444555566788


Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCccc---HH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRER---IS---EARNELHQILSDNELSNAA-LLVFANKQDLPNV  133 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~  133 (181)
                      ..+.+|||||+++|...+...+..+|++++|+|+++...   |.   ...+.+..+..    .++| +++++||+|+...
T Consensus        95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~  170 (439)
T 3j2k_7           95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV  170 (439)
T ss_pred             eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence            899999999999999999999999999999999987431   11   22222222222    2455 9999999998642


Q ss_pred             CC----HHHHHhhh----CccccC-CccEEEEEeeccCCCCHHHHHH
Q 030233          134 MP----TAEVADKL----ELYSLG-QRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus       134 ~~----~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ..    .+++.+.+    ....+. ...++++++||++|.|++++.+
T Consensus       171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            11    12222221    111111 1257899999999999999544

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=4.9e-22  Score=150.66  Aligned_cols=151  Identities=14%  Similarity=0.101  Sum_probs=102.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC---ccc---------------------------------ccCccceeEEEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE---IVT---------------------------------TTPTIGFNVEAVEY   58 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~---~~~---------------------------------~~~~~~~~~~~~~~   58 (181)
                      +..++|+++|++++|||||+++|++..   +..                                 ...|.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            446899999999999999999998653   110                                 01222333444555


Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--H
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--T  136 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~  136 (181)
                      ....+.+|||||+++|...+...+..+|++++|+|+++... ....+++..+...   ...|+++|+||+|+.+...  .
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~  177 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF  177 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence            78899999999999999998889999999999999987542 2333444333222   2347999999999975321  1


Q ss_pred             HHHHhhhCc--cccC--CccEEEEEeeccCCCCHHHH
Q 030233          137 AEVADKLEL--YSLG--QRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus       137 ~~~~~~~~~--~~~~--~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +.+......  ...+  ....+++++||++|.|++++
T Consensus       178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            112221111  0112  34578999999999999874

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.89  E-value=7.1e-23  Score=153.64  Aligned_cols=158  Identities=17%  Similarity=0.101  Sum_probs=109.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC-------cc------------cccCccceeEEEEEECCeEEEEEEcCCChhhHH
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE-------IV------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA   76 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   76 (181)
                      ..++|+++|++++|||||++++++..       +.            ....|.......+...+..+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998731       11            112233333334455678999999999999998


Q ss_pred             HHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-----HHHHhhhCccccCC
Q 030233           77 LWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-----AEVADKLELYSLGQ  150 (181)
Q Consensus        77 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-----~~~~~~~~~~~~~~  150 (181)
                      .....+..+|++++|+|+++....+ ..+.+..+..    .++| +++++||+|+.+....     +++.+.+....+..
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            8889999999999999998754333 2333333322    3677 7899999998752111     12222222111112


Q ss_pred             ccEEEEEeeccCCCC----------HHHHHHHHHhhhh
Q 030233          151 RRWSIQSCSAISGQG----------LYEGLDWLSNNIS  178 (181)
Q Consensus       151 ~~~~~~~~Sa~~~~~----------i~~l~~~i~~~~~  178 (181)
                      ..++++++||++|.|          ++++++.|.+.+.
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            246899999999775          8999999988664

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=3e-22  Score=142.40  Aligned_cols=161  Identities=12%  Similarity=0.155  Sum_probs=103.3

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC-ccc-cc---CccceeEEEEEECCeEEEEEEcCCChhh-----------HHH
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE-IVT-TT---PTIGFNVEAVEYKNKSFCVWDVGGQNKI-----------RAL   77 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----------~~~   77 (181)
                      ....++|+++|++|+|||||+|++++.. +.. ..   .|.......+.+.+..+.+|||||...+           ...
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999999877 322 22   2334445556678899999999996543           223


Q ss_pred             HHhhccCCCEEEEEEECCCcccH-HHHHHHHHHHHcCCCCCCCeEEEEEe-CCCCCCCCCHHH---------HHhhhCcc
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERI-SEARNELHQILSDNELSNAALLVFAN-KQDLPNVMPTAE---------VADKLELY  146 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piilv~n-K~D~~~~~~~~~---------~~~~~~~~  146 (181)
                      ....++.+|++++|+|+++.... .....++..+... . ...|+++++| |+|+... ....         +.......
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-D-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-G-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-h-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence            34467889999999999863222 2233344443321 1 1345665565 9999743 3332         11111111


Q ss_pred             ccCCccEEE--EEeeccCCCCHHHHHHHHHhhhhc
Q 030233          147 SLGQRRWSI--QSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       147 ~~~~~~~~~--~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                        ......+  +++||++|.|++++|++|.+.+..
T Consensus       176 --~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          176 --GGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             --TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence              1111012  889999999999999999988765

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.89  E-value=1.4e-22  Score=155.42  Aligned_cols=152  Identities=16%  Similarity=0.156  Sum_probs=103.2

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEEC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYK   59 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|++++|||||+++|++..  +.                                ....|.......+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            3457999999999999999999997652  10                                0123444555566678


Q ss_pred             CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHH------HHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERIS------EARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      +..+.+|||||+++|...+...+..+|++++|+|+++..+..      ...+.+......   ...|+|+|+||+|+.+.
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGGTT
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcEEEEEECcCcccc
Confidence            899999999999999999999999999999999998764322      222222222222   23579999999998752


Q ss_pred             C--CHHHHHhhhC----ccccCCccEEEEEeeccCCCCHHH
Q 030233          134 M--PTAEVADKLE----LYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       134 ~--~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      .  ..+++...+.    ........++++++||++|+|+++
T Consensus       187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            1  1122222221    111122367899999999999975

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.89  E-value=3e-24  Score=165.17  Aligned_cols=158  Identities=15%  Similarity=0.109  Sum_probs=110.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccc-cC--ccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-TP--TIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +.++|+++|++++|||||+++|.+..+... .+  |..+....+.. .+..+.+|||||++.|..++...+..+|++++|
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            568899999999999999999987653221 11  22222222333 455799999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC---HHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP---TAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +|+++....+.. ..+..+..    .++|+++++||+|+.+...   ..++..............+++++||++|+|+++
T Consensus        83 VDa~dg~~~qt~-e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           83 VAADDGVMKQTV-ESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             CBSSSCCCHHHH-HHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EECCCCccHHHH-HHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            999875544333 33333332    3689999999999865321   122222111111112357899999999999999


Q ss_pred             HHHHHHhhhh
Q 030233          169 GLDWLSNNIS  178 (181)
Q Consensus       169 l~~~i~~~~~  178 (181)
                      +++++...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999987653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.3e-23  Score=142.93  Aligned_cols=124  Identities=26%  Similarity=0.421  Sum_probs=94.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccc----cCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccC----CC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT----TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRD----TL   86 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~d   86 (181)
                      .+.++|+++|++|+|||||++++++..+...    .++...     .+....+.+|||||++.+...+..++..    +|
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  120 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK  120 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence            4678999999999999999999998875432    222221     2256788999999998876666666654    89


Q ss_pred             EEEEEEECC-CcccHHHHHHHHHHHHcCC---CCCCCeEEEEEeCCCCCCCCCHHHHHhhh
Q 030233           87 GLTFVVDSS-DRERISEARNELHQILSDN---ELSNAALLVFANKQDLPNVMPTAEVADKL  143 (181)
Q Consensus        87 ~ii~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~~~~~~~~~  143 (181)
                      ++++|+|++ +++++.....|+..++...   ...+.|+++|+||+|+.+....+++...+
T Consensus       121 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             EEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            999999999 8899999888888776532   22579999999999998877776666554

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.88  E-value=6e-23  Score=160.09  Aligned_cols=156  Identities=21%  Similarity=0.153  Sum_probs=107.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEE----------------ECCeEEEEEEcCCChh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVE----------------YKNKSFCVWDVGGQNK   73 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~----------------~~~~~~~i~d~~g~~~   73 (181)
                      .+.++|+++|++++|||||++++.+......     .++.+.......                +....+.+|||||+++
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            4578999999999999999999987654322     223343332211                1122699999999999


Q ss_pred             hHHHHHhhccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------H
Q 030233           74 IRALWRHYFRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--------------T  136 (181)
Q Consensus        74 ~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~  136 (181)
                      |..++...++.+|++|+|+|+++   +.++....    .+..    .++|+++++||+|+.+...              .
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~  154 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD  154 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence            99888888899999999999998   44444332    2222    4789999999999864211              0


Q ss_pred             H-----------HHHhhhCcccc----------CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          137 A-----------EVADKLELYSL----------GQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       137 ~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      +           ++...+....+          .....+++++||++|+|++++++++...+.
T Consensus       155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            1           11111110000          124568999999999999999999987653

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.7e-23  Score=159.69  Aligned_cols=152  Identities=16%  Similarity=0.157  Sum_probs=104.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc--c--------------------------------ccCccceeEEEEEECC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV--T--------------------------------TTPTIGFNVEAVEYKN   60 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~--~--------------------------------~~~~~~~~~~~~~~~~   60 (181)
                      +..++|+++|++++|||||+++|++....  .                                ...|.......+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45789999999999999999999865311  0                                1234445555677788


Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI---SEARNELHQILSDNELSNAALLVFANKQDLPNVM  134 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  134 (181)
                      ..+.+|||||+++|...+...++.+|++|+|+|+++..   ++   ......+......   ...|+|+|+||+|+.+..
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l---gi~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT---TCCEEEEEEECTTTTTTC
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc---CCCeEEEEEecccccchh
Confidence            89999999999999999999999999999999998631   11   1222222222222   235699999999987621


Q ss_pred             C--HHHHHhhh----CccccCCccEEEEEeeccCCCCHHHH
Q 030233          135 P--TAEVADKL----ELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus       135 ~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      .  .+++...+    .........++++++||++|.|++++
T Consensus       322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            1  12222222    11111223568999999999999865

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.88  E-value=1.2e-22  Score=145.44  Aligned_cols=157  Identities=12%  Similarity=0.184  Sum_probs=90.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc--cc-------cCccceeEEEEEEC----CeEEEEEEcCCCh-------hhH
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV--TT-------TPTIGFNVEAVEYK----NKSFCVWDVGGQN-------KIR   75 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~-------~~~~~~~~~~~~~~----~~~~~i~d~~g~~-------~~~   75 (181)
                      ..++|+++|.+|+|||||+|++++....  .+       .+|.+.+.......    ...+.+|||||..       .+.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            4789999999999999999998876622  22       45566555555442    2489999999962       233


Q ss_pred             HHH-------Hhhcc-------------CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233           76 ALW-------RHYFR-------------DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP  135 (181)
Q Consensus        76 ~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  135 (181)
                      .+.       ..++.             .+|+++++++.+.. ++......+...+..    ++|+++|+||+|+.....
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~-~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e  161 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH-GLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS-SCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC-CCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence            332       33333             27799999987642 233333333333333    789999999999875333


Q ss_pred             HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          136 TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      .......... .....+++++++||.+++|+++++++|.+.+.
T Consensus       162 ~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          162 CQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            3222222211 11234557899999999999999999987653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=6.8e-22  Score=138.96  Aligned_cols=159  Identities=12%  Similarity=0.091  Sum_probs=99.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccc-----cCccceeEEEEEECCeEEEEEEcCCC-----------hhhHHH
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-----TPTIGFNVEAVEYKNKSFCVWDVGGQ-----------NKIRAL   77 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~d~~g~-----------~~~~~~   77 (181)
                      ....++|+++|++|+|||||+|++++..+...     ..|.......+.+.+..+.+|||||.           ..+...
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999999875332     22334445566778899999999993           234455


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHH--------HHHhhhCcccc
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTA--------EVADKLELYSL  148 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~--------~~~~~~~~~~~  148 (181)
                      ....++.+|++++|+|+++....  ...++..+.... .....|+++|+||+|+......+        .+.....    
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~----  179 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD----  179 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH----
T ss_pred             HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH----
Confidence            55666788999999999764432  222333322110 00235999999999987643333        1222211    


Q ss_pred             CCccEEEEEeecc-----CCCCHHHHHHHHHhhhhc
Q 030233          149 GQRRWSIQSCSAI-----SGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       149 ~~~~~~~~~~Sa~-----~~~~i~~l~~~i~~~~~~  179 (181)
                       ..+..++.++..     ++.++.++++.+.+.+.+
T Consensus       180 -~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 -IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             -HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence             112235555544     347999999998877654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.87  E-value=1.3e-21  Score=141.78  Aligned_cols=155  Identities=16%  Similarity=0.157  Sum_probs=100.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccc-------cCcc-----------------c---eeE---------------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT-------TPTI-----------------G---FNV---------------   53 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-------~~~~-----------------~---~~~---------------   53 (181)
                      ..++|+++|.+|+|||||+|++++..+...       .|+.                 |   ++.               
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            467999999999999999999999875311       1210                 0   000               


Q ss_pred             ------------EEEEE-CCeEEEEEEcCCCh-------------hhHHHHHhhccCCCEEE-EEEECCCcccHHHHHHH
Q 030233           54 ------------EAVEY-KNKSFCVWDVGGQN-------------KIRALWRHYFRDTLGLT-FVVDSSDRERISEARNE  106 (181)
Q Consensus        54 ------------~~~~~-~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~~  106 (181)
                                  ..+.. ....+.+|||||..             .+......+++.++.++ +|+|+++..+......+
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                        00111 13689999999953             45567778888888776 79999865433332233


Q ss_pred             HHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233          107 LHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus       107 ~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      +..+ ..   .+.|+++|+||+|+.+... ..+..... .........+++++||++|.|++++++++.+
T Consensus       185 ~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          185 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             HHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             HHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            3333 22   4789999999999875433 22221110 1111112357999999999999999999865

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.87  E-value=1e-23  Score=160.99  Aligned_cols=153  Identities=21%  Similarity=0.232  Sum_probs=106.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+.++|+++|++++|||||++++.+..+...   ..|.......+.+.+..+.+|||||++.|..++...+..+|++++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            4678999999999999999999987543221   1222222233444667899999999999998888888999999999


Q ss_pred             EECCCc---ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc--ccCC--ccEEEEEeeccCCC
Q 030233           92 VDSSDR---ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY--SLGQ--RRWSIQSCSAISGQ  164 (181)
Q Consensus        92 ~d~~~~---~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~Sa~~~~  164 (181)
                      +|+++.   ++...    +..+..    .++|+++++||+|+..... +.+...+...  ....  ...+++++||++|+
T Consensus        82 Vda~~g~~~qT~e~----l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           82 VAADDGVMPQTIEA----IQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EETTTBSCTTTHHH----HHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             eecccCccHHHHHH----HHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            999873   33332    222222    3689999999999965321 1122211110  0011  23689999999999


Q ss_pred             CHHHHHHHHHhh
Q 030233          165 GLYEGLDWLSNN  176 (181)
Q Consensus       165 ~i~~l~~~i~~~  176 (181)
                      |++++++++...
T Consensus       153 gI~eLle~I~~~  164 (501)
T 1zo1_I          153 GIDELLDAILLQ  164 (501)
T ss_dssp             TCTTHHHHTTTT
T ss_pred             Ccchhhhhhhhh
Confidence            999999998764

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.87  E-value=6.1e-22  Score=150.87  Aligned_cols=150  Identities=17%  Similarity=0.147  Sum_probs=103.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC--Ccc--------------------------------cccCccceeEEEEEECC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG--EIV--------------------------------TTTPTIGFNVEAVEYKN   60 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~--~~~--------------------------------~~~~~~~~~~~~~~~~~   60 (181)
                      +..++|+++|++++|||||+++|++.  .+.                                ....|.......+...+
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45689999999999999999999864  111                                12345555566677788


Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cHH---HHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RIS---EARNELHQILSDNELSNA-ALLVFANKQDLPNV  133 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~  133 (181)
                      ..+.+|||||+++|.......+..+|++|+|+|+++..   +|+   ...+.+.....    .++ ++++++||+|+.+.
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~  160 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW  160 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccC
Confidence            99999999999999999999999999999999998642   221   22233332222    245 49999999999742


Q ss_pred             CC--HHHHHhhh----CccccCCccEEEEEeeccCCCCHHH
Q 030233          134 MP--TAEVADKL----ELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       134 ~~--~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      ..  .+++...+    ....+....++++++||++|.|+.+
T Consensus       161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            11  11222211    1111111246899999999999874

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.86  E-value=4e-23  Score=157.71  Aligned_cols=156  Identities=15%  Similarity=0.177  Sum_probs=91.7

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEE
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAV   56 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~   56 (181)
                      .+..+..++|+++|++++|||||+++|+...  +.                                ....|++.....+
T Consensus        37 ~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~  116 (467)
T 1r5b_A           37 DMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYF  116 (467)
T ss_dssp             HHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEE
T ss_pred             hhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEE
Confidence            3345667899999999999999999997421  11                                1233444444556


Q ss_pred             EECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc---ccHH---HHHHHHHHHHcCCCCCCCe-EEEEEeCCC
Q 030233           57 EYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR---ERIS---EARNELHQILSDNELSNAA-LLVFANKQD  129 (181)
Q Consensus        57 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~D  129 (181)
                      ...+..+.+|||||+++|...+...+..+|++|+|+|+++.   .+|+   ...+.+.....    .++| +++++||+|
T Consensus       117 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~D  192 (467)
T 1r5b_A          117 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMD  192 (467)
T ss_dssp             ECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTT
T ss_pred             ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECcc
Confidence            66788999999999999999988899999999999999875   2222   12222222211    3566 999999999


Q ss_pred             CCCCC-CHH---H----HHhhhCcc-ccC-CccEEEEEeeccCCCCHHHHH
Q 030233          130 LPNVM-PTA---E----VADKLELY-SLG-QRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus       130 ~~~~~-~~~---~----~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      +.... +.+   .    +...+... .+. ..+++++++||++|.|+++++
T Consensus       193 l~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          193 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            96421 111   1    22222111 111 126789999999999998754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.86  E-value=2.9e-21  Score=157.62  Aligned_cols=160  Identities=18%  Similarity=0.160  Sum_probs=108.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC-------ccc--------ccCccce----eEEEEEECCeEEEEEEcCCChhh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE-------IVT--------TTPTIGF----NVEAVEYKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~-------~~~--------~~~~~~~----~~~~~~~~~~~~~i~d~~g~~~~   74 (181)
                      .+..++|+++|++++|||||++++.+..       +..        ...+.|+    ....+......+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3456899999999999999999998631       000        0112232    22334456789999999999999


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCCH-----HHHHhhhCcccc
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMPT-----AEVADKLELYSL  148 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~-----~~~~~~~~~~~~  148 (181)
                      .......+..+|++|+|+|+++.... ...+++..+..    .++| +|+++||+|+.+....     +++.+.+....+
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            99999999999999999999875322 23344433322    2577 8999999999752211     122222221111


Q ss_pred             CCccEEEEEeeccCC--------CCHHHHHHHHHhhhh
Q 030233          149 GQRRWSIQSCSAISG--------QGLYEGLDWLSNNIS  178 (181)
Q Consensus       149 ~~~~~~~~~~Sa~~~--------~~i~~l~~~i~~~~~  178 (181)
                      ....++++++||++|        +|++++++.|.+.+.
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            223568999999999        469999999988664

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.85  E-value=1.1e-20  Score=130.14  Aligned_cols=159  Identities=19%  Similarity=0.186  Sum_probs=98.5

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCC-cccccCccceeEE--EEEECCeEEEEEEcCCCh----------hhHHHH
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVE--AVEYKNKSFCVWDVGGQN----------KIRALW   78 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~i~d~~g~~----------~~~~~~   78 (181)
                      +......+|+++|++|+|||||++++++.. .....++.|.+..  .+.+.+ .+.+|||||..          .+....
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            344567899999999999999999999877 3334555554432  233333 67899999973          233333


Q ss_pred             Hhhc---cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH----HHHHhhhCccccCCc
Q 030233           79 RHYF---RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT----AEVADKLELYSLGQR  151 (181)
Q Consensus        79 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~----~~~~~~~~~~~~~~~  151 (181)
                      ..++   ..++++++++|+.++.+....  .+...+..   .+.|+++++||+|+.+....    ..+......   -..
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~  171 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNG  171 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCS
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCC
Confidence            3344   468999999999876554321  12222222   46899999999998753211    112221111   112


Q ss_pred             cEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          152 RWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      .+.++++||+++.|++++++.|.+.+.+
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999887643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.85  E-value=1.1e-19  Score=140.25  Aligned_cols=114  Identities=19%  Similarity=0.141  Sum_probs=83.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC--cc-----------------------cccCccceeEEEEEECCeEEEEEEcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE--IV-----------------------TTTPTIGFNVEAVEYKNKSFCVWDVGG   70 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~--~~-----------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g   70 (181)
                      +..+|+++|++++|||||+++++...  ..                       ....|.......+.+.+..+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            46899999999999999999998632  10                       001122233445667889999999999


Q ss_pred             ChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233           71 QNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM  134 (181)
Q Consensus        71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  134 (181)
                      +.+|......+++.+|++|+|+|+++...- .....+.. ...   .++|+++++||+|+....
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~-~~~---~~ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEV-TRL---RDTPILTFMNKLDRDIRD  150 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHH-HTT---TTCCEEEEEECTTSCCSC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHH-HHH---cCCCEEEEEcCcCCcccc
Confidence            999998888899999999999999875332 22233333 232   478999999999997643

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.85  E-value=4.3e-20  Score=146.77  Aligned_cols=114  Identities=20%  Similarity=0.109  Sum_probs=87.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC--Ccc-------------------cccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG--EIV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNK   73 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   73 (181)
                      .+..+|+++|++++|||||+++++..  .+.                   ....|.......+.+.+..+.+|||||+.+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            45678999999999999999999831  110                   223455555666777899999999999999


Q ss_pred             hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      +...+..+++.+|++|+|+|+++..+.+....|. .+..    .++|+++++||+|+...
T Consensus        90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccC
Confidence            9999999999999999999999877766654443 3333    37899999999998764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=5.6e-22  Score=146.86  Aligned_cols=157  Identities=13%  Similarity=0.218  Sum_probs=81.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc-cc-c--------cCccceeEEEEEE--CC--eEEEEEEcCCC-------hh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VT-T--------TPTIGFNVEAVEY--KN--KSFCVWDVGGQ-------NK   73 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~-~--------~~~~~~~~~~~~~--~~--~~~~i~d~~g~-------~~   73 (181)
                      ...++|+++|++|+|||||++++++... .. .        .+|.+.....+..  .+  ..+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            3468999999999999999999876542 21 1        1344433333222  22  47999999998       44


Q ss_pred             hHHHHH-------hhccCC-------------CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           74 IRALWR-------HYFRDT-------------LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        74 ~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      +..++.       .+++.+             |+++|+++.. ..++......+...+.    .++|+|+|+||+|+...
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence            444433       444332             3455555542 4556565543433332    47899999999998763


Q ss_pred             CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      .....+.... ...+...+++++++||++|.+ ++.|.++.+.+.
T Consensus       190 ~ev~~~k~~i-~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~  232 (361)
T 2qag_A          190 KERERLKKRI-LDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK  232 (361)
T ss_dssp             HHHHHHHHHH-HHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence            2222211111 112234567899999999998 777777776654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.84  E-value=1.4e-22  Score=158.40  Aligned_cols=160  Identities=23%  Similarity=0.207  Sum_probs=89.3

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEEEEEC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEAVEYK   59 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~~~~~   59 (181)
                      .+..++|+++|++++|||||+++|++..  ..                                ....|.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            3456799999999999999999996421  00                                0112333333345556


Q ss_pred             CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCC
Q 030233           60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI---SEARNELHQILSDNELSNAA-LLVFANKQDLPN  132 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~  132 (181)
                      +..+.+|||||+++|.......+..+|++|+|+|+++..   ++   ......+..+..    .++| +|+|+||+|+.+
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence            788999999999998888888888999999999997532   11   112222222222    2454 999999999875


Q ss_pred             CC--CHH----HHHhhh-CccccCCccEEEEEeeccCCCCHH--------------HHHHHHHhhh
Q 030233          133 VM--PTA----EVADKL-ELYSLGQRRWSIQSCSAISGQGLY--------------EGLDWLSNNI  177 (181)
Q Consensus       133 ~~--~~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~--------------~l~~~i~~~~  177 (181)
                      ..  ..+    ++...+ ....+....++++++||++|.|+.              +|++.|...+
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            21  112    222222 222223346789999999999998              7888887654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.83  E-value=1.2e-20  Score=139.35  Aligned_cols=133  Identities=28%  Similarity=0.353  Sum_probs=100.5

Q ss_pred             CccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCC
Q 030233           47 PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----------RERISEARNELHQILSDNEL  116 (181)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~  116 (181)
                      +|.|+....+.+.+..+.+|||+|++.++..|..++++++++|+|+|+++          ..++.+...|+..+......
T Consensus       187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~  266 (362)
T 1zcb_A          187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF  266 (362)
T ss_dssp             CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred             CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence            35677777788899999999999999999999999999999999999998          77999999999999887666


Q ss_pred             CCCeEEEEEeCCCCCC------------------CCCHHHHHhhh-----CccccC-CccEEEEEeeccCCCCHHHHHHH
Q 030233          117 SNAALLVFANKQDLPN------------------VMPTAEVADKL-----ELYSLG-QRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus       117 ~~~piilv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      .+.|+|+++||+|+..                  ..+.++.....     .+.... ...+.+++|||++|+||+++|++
T Consensus       267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~  346 (362)
T 1zcb_A          267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD  346 (362)
T ss_dssp             TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence            7899999999999852                  13344443322     111111 34678999999999999999999


Q ss_pred             HHhhhhc
Q 030233          173 LSNNISV  179 (181)
Q Consensus       173 i~~~~~~  179 (181)
                      +.+.+.+
T Consensus       347 v~~~i~~  353 (362)
T 1zcb_A          347 VKDTILH  353 (362)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.83  E-value=2.4e-19  Score=142.05  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=84.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc---------------------cccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV---------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNK   73 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   73 (181)
                      .+..+|+++|++|+|||||++++++....                     ....+.......+......+.+|||||+++
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            45678999999999999999999843211                     012233344445666889999999999999


Q ss_pred             hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      +...+..+++.+|++++|+|+.+..... ...++..+..    .++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence            9999999999999999999987653332 2344444433    378999999999987

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.83  E-value=2.3e-20  Score=148.43  Aligned_cols=159  Identities=20%  Similarity=0.213  Sum_probs=105.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccce--------------eEE--------------------------
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF--------------NVE--------------------------   54 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~--------------~~~--------------------------   54 (181)
                      ...++|+++|.+|+|||||+|++++.......+.+++              +..                          
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            4578999999999999999999998774332221111              110                          


Q ss_pred             -----------------EEEECC----eEEEEEEcCCChh---hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHH
Q 030233           55 -----------------AVEYKN----KSFCVWDVGGQNK---IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQI  110 (181)
Q Consensus        55 -----------------~~~~~~----~~~~i~d~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  110 (181)
                                       .+.+..    ..+.+|||||...   ....+..+++.+|++++|+|++++.+......+... 
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~-  225 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY-  225 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH-
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH-
Confidence                             000100    3689999999654   345566788899999999999887776665444333 


Q ss_pred             HcCCCCCCCeEEEEEeCCCCCCCC-----CHHH-------HHh----hhCccccC-----CccEEEEEeecc--------
Q 030233          111 LSDNELSNAALLVFANKQDLPNVM-----PTAE-------VAD----KLELYSLG-----QRRWSIQSCSAI--------  161 (181)
Q Consensus       111 ~~~~~~~~~piilv~nK~D~~~~~-----~~~~-------~~~----~~~~~~~~-----~~~~~~~~~Sa~--------  161 (181)
                      +..   .+.|+++|+||+|+....     ..+.       +..    .+.. ...     ....+++++||+        
T Consensus       226 l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~-~~~~~g~~~~~~~v~~vSAk~al~~~~~  301 (695)
T 2j69_A          226 IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAE-YCTVEGQNIYDERVFELSSIQALRRRLK  301 (695)
T ss_dssp             TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGG-GGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred             HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCcEEEEeChHHHHhhcc
Confidence            232   367899999999986432     1111       211    1110 001     123468999999        


Q ss_pred             ------CCCCHHHHHHHHHhhhh
Q 030233          162 ------SGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       162 ------~~~~i~~l~~~i~~~~~  178 (181)
                            +|.|++++++.+.+.+.
T Consensus       302 ~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          302 NPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             CTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             CchhhhhccCHHHHHHHHHHHHH
Confidence                  99999999999988764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.83  E-value=8.2e-20  Score=133.18  Aligned_cols=161  Identities=15%  Similarity=0.116  Sum_probs=98.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc-ccc----cCcc---ceeEE--------------------------------
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTT----TPTI---GFNVE--------------------------------   54 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~----~~~~---~~~~~--------------------------------   54 (181)
                      ...++|+++|.+|+|||||+|++++..+ +..    ...+   .....                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            3467999999999999999999999875 211    1111   00000                                


Q ss_pred             --------------------E---EEECCeEEEEEEcCCChh-------------hHHHHHhhccCCCEEEEEEECCCcc
Q 030233           55 --------------------A---VEYKNKSFCVWDVGGQNK-------------IRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        55 --------------------~---~~~~~~~~~i~d~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                                          .   .......+.+|||||...             +......++..+|++++|+|.++..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                                0   111346799999999643             5566778889999999999975332


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccC---CCCHHHHHHHHH
Q 030233           99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAIS---GQGLYEGLDWLS  174 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~l~~~i~  174 (181)
                      ........+...+..   .+.|+++|+||+|+..... ..+.... ..........++..+|+.+   +.|+.++++.+.
T Consensus       182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~  257 (315)
T 1jwy_B          182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTG-RVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI  257 (315)
T ss_dssp             STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTT-SSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhC-CCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence            111111122222333   4789999999999875433 1121111 0111112233455566666   899999999987


Q ss_pred             hhhhc
Q 030233          175 NNISV  179 (181)
Q Consensus       175 ~~~~~  179 (181)
                      +.+..
T Consensus       258 ~~~~~  262 (315)
T 1jwy_B          258 LYFKN  262 (315)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            76643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.82  E-value=2.7e-19  Score=142.25  Aligned_cols=116  Identities=17%  Similarity=0.123  Sum_probs=87.8

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhc--CCcc-------------------cccCccceeEEEEEECCeEEEEEEcCCC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKL--GEIV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQ   71 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~   71 (181)
                      .+.+..+|+++|++|+|||||+++++.  +.+.                   ....|.......+.+.+..+.+|||||+
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~   85 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH   85 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence            345678999999999999999999984  2111                   1123444445556778899999999999


Q ss_pred             hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           72 NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        72 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      .++...+..+++.+|++++|+|+++..+......| ..+..    .+.|+++|+||+|+...
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence            99999999999999999999999987666555443 33333    37899999999999764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.82  E-value=6.6e-21  Score=141.85  Aligned_cols=132  Identities=24%  Similarity=0.306  Sum_probs=104.4

Q ss_pred             ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCC----------cccHHHHHHHHHHHHcCCCCC
Q 030233           48 TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSD----------RERISEARNELHQILSDNELS  117 (181)
Q Consensus        48 ~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~  117 (181)
                      |+|+....+.+.+..+.+|||+|++.++..|..++++++++|+|||+++          ..+|.+...|+..+.......
T Consensus       204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~  283 (402)
T 1azs_C          204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR  283 (402)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred             eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence            5677777778889999999999999999999999999999999999998          889999999999998876667


Q ss_pred             CCeEEEEEeCCCCCCC-----C-C--------------------------HHHHHhhhCcc--c------cCCccEEEEE
Q 030233          118 NAALLVFANKQDLPNV-----M-P--------------------------TAEVADKLELY--S------LGQRRWSIQS  157 (181)
Q Consensus       118 ~~piilv~nK~D~~~~-----~-~--------------------------~~~~~~~~~~~--~------~~~~~~~~~~  157 (181)
                      +.|+++|+||+|+...     . .                          .++........  .      .....+.+++
T Consensus       284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~  363 (402)
T 1azs_C          284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF  363 (402)
T ss_dssp             SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred             CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence            8999999999997421     0 0                          11111110000  0      0123577899


Q ss_pred             eeccCCCCHHHHHHHHHhhhhc
Q 030233          158 CSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      |||++++||+++|+++.+.+.+
T Consensus       364 TSA~d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          364 TCAVDTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeecCcCHHHHHHHHHHHHHH
Confidence            9999999999999999887754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.82  E-value=1.2e-18  Score=138.60  Aligned_cols=115  Identities=14%  Similarity=0.027  Sum_probs=85.0

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECC-------eEEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKN-------KSFCV   65 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~-------~~~~i   65 (181)
                      +.+..+|+++|+.++|||||+++++...  +.                   ....|+......+.+.+       ..+.+
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3556799999999999999999997431  11                   11223333334455555       89999


Q ss_pred             EEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           66 WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        66 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      |||||+.+|...+...++.+|++|+|+|+++....+... .+.....    .++|+++++||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence            999999999999999999999999999998765444433 3333322    37899999999998653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=6.9e-20  Score=130.38  Aligned_cols=116  Identities=12%  Similarity=0.106  Sum_probs=79.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh-------c-
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY-------F-   82 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~-------~-   82 (181)
                      ++.++|+++|.+|+|||||+|++++.......+    |.......+...+..+.+|||||++++......+       + 
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~  113 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV  113 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence            468999999999999999999999987433222    3334455566788999999999986653222111       1 


Q ss_pred             -cCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCC-CCCCeEEEEEeCCCCC
Q 030233           83 -RDTLGLTFVVDSSDRERISEA-RNELHQILSDNE-LSNAALLVFANKQDLP  131 (181)
Q Consensus        83 -~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~D~~  131 (181)
                       ..+|++++|+|++... +... ..++..+..... ....|+++|+||+|+.
T Consensus       114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence             2689999999987644 4333 344444433211 1124899999999985

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.80  E-value=1.8e-20  Score=137.96  Aligned_cols=121  Identities=18%  Similarity=0.345  Sum_probs=93.0

Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC----------CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCC
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS----------DRERISEARNELHQILSDNELSNAALLVFANKQ  128 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~  128 (181)
                      ....+.+|||+|++.++..|..++++++++|+|+|++          +..++.+...|+..+.......+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            3578999999999999999999999999999999998          788999999999999887656789999999999


Q ss_pred             CCCCC----CC-------------------HHHHHhhhCccc-----------cCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233          129 DLPNV----MP-------------------TAEVADKLELYS-----------LGQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus       129 D~~~~----~~-------------------~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      |+..+    .+                   .++.........           .....+.+++|||++++||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            97421    00                   111111111100           002346689999999999999999999


Q ss_pred             hhhhc
Q 030233          175 NNISV  179 (181)
Q Consensus       175 ~~~~~  179 (181)
                      +.+.+
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.80  E-value=6.2e-19  Score=132.17  Aligned_cols=156  Identities=22%  Similarity=0.230  Sum_probs=104.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-eEEEEEEcCCChhh-------HHHHHhhccCCCE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-KSFCVWDVGGQNKI-------RALWRHYFRDTLG   87 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~i~d~~g~~~~-------~~~~~~~~~~~d~   87 (181)
                      .++++|++|+|||||++++++....  .+ ..|...+...+.+.+ ..+.+||+||....       ..........++.
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~  238 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV  238 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHh
Confidence            5899999999999999999887421  11 122333344455554 78999999996321       1112233457999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCH
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGL  166 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (181)
                      +++++|++ ...+..+..+...+.... .....|.++++||+|+......+.+.+..     ...+.+++.+||++++|+
T Consensus       239 lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~gi  312 (416)
T 1udx_A          239 LLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAGL  312 (416)
T ss_dssp             EEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTTH
T ss_pred             hhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccCH
Confidence            99999998 556666665555443321 11357899999999987631112222222     223457999999999999


Q ss_pred             HHHHHHHHhhhhcc
Q 030233          167 YEGLDWLSNNISVK  180 (181)
Q Consensus       167 ~~l~~~i~~~~~~~  180 (181)
                      ++++++|.+.+.+.
T Consensus       313 ~eL~~~i~~~l~~~  326 (416)
T 1udx_A          313 PALKEALHALVRST  326 (416)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=1.1e-18  Score=124.67  Aligned_cols=117  Identities=11%  Similarity=0.083  Sum_probs=78.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccc----eeEEEEEECCeEEEEEEcCCChhhH-------HHHHhh--
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIG----FNVEAVEYKNKSFCVWDVGGQNKIR-------ALWRHY--   81 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~--   81 (181)
                      ...++|+++|.+|+|||||+|++++..+....++.+    .....+...+..+.+|||||..++.       .....+  
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            357999999999999999999999887543333333    2233455678899999999976543       122222  


Q ss_pred             ccCCCEEEEEEECCCcccHHHH-HHHHHHHHcCCC-CCCCeEEEEEeCCCCCC
Q 030233           82 FRDTLGLTFVVDSSDRERISEA-RNELHQILSDNE-LSNAALLVFANKQDLPN  132 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~piilv~nK~D~~~  132 (181)
                      ...+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+..
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence            2468999999998653 34333 244444432211 01269999999999865

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.78  E-value=1.8e-19  Score=133.62  Aligned_cols=149  Identities=12%  Similarity=0.184  Sum_probs=94.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcccccC-cc----------------------------------------------
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTTP-TI----------------------------------------------   49 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~-~~----------------------------------------------   49 (181)
                      -.+|+++|++|+|||||+|++++..+..... +.                                              
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~  113 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR  113 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence            3489999999999999999999977522111 00                                              


Q ss_pred             ------ceeEE--EEE---ECCeEEEEEEcCCChhh-------------HHHHHhhccCCCEEEEEEECCCcccHHHHHH
Q 030233           50 ------GFNVE--AVE---YKNKSFCVWDVGGQNKI-------------RALWRHYFRDTLGLTFVVDSSDRERISEARN  105 (181)
Q Consensus        50 ------~~~~~--~~~---~~~~~~~i~d~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~  105 (181)
                            ++...  .+.   .....+.+|||||...+             ......+++.+|++++|+|..+.+....  .
T Consensus       114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~  191 (360)
T 3t34_A          114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--D  191 (360)
T ss_dssp             TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--H
T ss_pred             hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--H
Confidence                  00000  111   12456899999997664             6677888999999999998765443322  1


Q ss_pred             HHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233          106 ELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus       106 ~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      ++..+ ......+.|+++|+||+|+..... ..+......    ...+.+|+++|+.++.++++.+..
T Consensus       192 ~~~l~-~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          192 AIKIS-REVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRS----FKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHH-HHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSS----SCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHH-HHhcccCCCEEEEEeCCccCCCcccHHHHHcCcc----ccccCCeEEEEECChHHhccCCCH
Confidence            22111 212224789999999999875322 222222211    223457999999998888776544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.77  E-value=4.5e-19  Score=131.15  Aligned_cols=155  Identities=15%  Similarity=0.141  Sum_probs=94.7

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cc------cCc----------------------------------------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TT------TPT----------------------------------------   48 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~------~~~----------------------------------------   48 (181)
                      ..++|+++|.+++|||||+|++++..+. ..      .|+                                        
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998753 11      121                                        


Q ss_pred             ---cceeE----EEEEE-CCeEEEEEEcCCCh-------------hhHHHHHhhccCCCE-EEEEEECCCcccHHHHHHH
Q 030233           49 ---IGFNV----EAVEY-KNKSFCVWDVGGQN-------------KIRALWRHYFRDTLG-LTFVVDSSDRERISEARNE  106 (181)
Q Consensus        49 ---~~~~~----~~~~~-~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~  106 (181)
                         .++..    ..+.. ....+.+|||||..             .+......++..++. +++|+|++....-.....+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i  189 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV  189 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence               00000    01111 24679999999942             455667677766654 4556666532111111122


Q ss_pred             HHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233          107 LHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus       107 ~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      +..+ ..   .+.|+++|+||+|+.+... ........ ..........++++||++|.|++++++.+.+
T Consensus       190 ~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          190 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHH-CT---TCTTEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHh-Cc---CCCceEEEeccccccCcchhHHHHHhCC-cccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3322 22   4789999999999975432 22222211 1111122347899999999999999998875

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.76  E-value=2.8e-17  Score=127.51  Aligned_cols=110  Identities=15%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC------------------cc-------cccCccceeEEEEEECCeEEEEEEcCCChh
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE------------------IV-------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNK   73 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~------------------~~-------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~   73 (181)
                      +|+++|+.++|||||..+++...                  ..       ....|+......+.+.+..++++||||+.+
T Consensus        33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD  112 (548)
T 3vqt_A           33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD  112 (548)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred             eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence            69999999999999999996211                  00       113345555667888999999999999999


Q ss_pred             hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           74 IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        74 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      |.......++-+|++|+|+|+...-.-+. ...|....+    .++|.++++||+|....
T Consensus       113 F~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          113 FSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred             HHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhc
Confidence            99999999999999999999985432222 333444444    37999999999998664

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.75  E-value=3.1e-19  Score=129.16  Aligned_cols=157  Identities=13%  Similarity=0.185  Sum_probs=77.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC-Cccccc---------CccceeEEEEEE----CCeEEEEEEcCCC-------hh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG-EIVTTT---------PTIGFNVEAVEY----KNKSFCVWDVGGQ-------NK   73 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~-~~~~~~---------~~~~~~~~~~~~----~~~~~~i~d~~g~-------~~   73 (181)
                      .-.++|+++|++|+|||||++++++. .++...         ++.......+..    ....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34689999999999999999998875 333221         222211111212    2468999999997       44


Q ss_pred             hHHHHH-------hhccC-------------CCEEEEEEECCCcccHHHHHH-HHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           74 IRALWR-------HYFRD-------------TLGLTFVVDSSDRERISEARN-ELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        74 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      +.....       .+++.             +++++|+.+.+. .+++.... .+..+ .    .+.|+++|+||+|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCC
Confidence            433332       33322             234566655432 23444332 22222 1    3579999999999875


Q ss_pred             CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ........+.. ...+...+++++++||++| |++++|.++.+.+.+
T Consensus       170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            22111111111 1111234568999999999 999999999887754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.74  E-value=1.9e-18  Score=127.93  Aligned_cols=152  Identities=15%  Similarity=0.143  Sum_probs=94.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC------Cc--ccccCcc---------------------ceeEE-----------
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG------EI--VTTTPTI---------------------GFNVE-----------   54 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~------~~--~~~~~~~---------------------~~~~~-----------   54 (181)
                      .+...|+++|.+|+|||||+++++..      ..  ....+..                     +....           
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~  156 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV  156 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence            45678999999999999999999632      10  0000000                     00000           


Q ss_pred             ---------EEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030233           55 ---------AVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA  125 (181)
Q Consensus        55 ---------~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  125 (181)
                               .+...+..+.++||||....   .......+|++++|+|....+.+..+.         ......|+++|+
T Consensus       157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVl  224 (355)
T 3p32_A          157 TRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVV  224 (355)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEE
T ss_pred             hHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEE
Confidence                     00124678999999995432   223457899999999987654432211         111346899999


Q ss_pred             eCCCCCCCCCHHHHHhhhC----ccc--cCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          126 NKQDLPNVMPTAEVADKLE----LYS--LGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       126 nK~D~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ||+|+.+..........+.    ...  ...+..+++++||++|+|+++++++|.+.+.
T Consensus       225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            9999865322222222111    110  0122457999999999999999999988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=3.8e-19  Score=128.81  Aligned_cols=135  Identities=19%  Similarity=0.124  Sum_probs=101.2

Q ss_pred             HHHHhhhcCCcc--cccCccceeEEEEEE-CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc-cHHHHHHHH
Q 030233           32 TILYKMKLGEIV--TTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE-RISEARNEL  107 (181)
Q Consensus        32 sl~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~  107 (181)
                      +|+.+++.+.+.  .+.||+|.... +.. .+..+.+||+  ++++..++..+++++|++++|+|+++++ ++..+..|+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l  108 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL  108 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence            688888888764  56789995544 333 2347999999  8889999999999999999999999987 788888888


Q ss_pred             HHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          108 HQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       108 ~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      ..+..    .++|+++|+||+|+.+....++..+.....  ... ++++++||++|+|++++|+.+...
T Consensus       109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~--~~~-~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A          109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY--SGL-YPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH--TTT-SCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHH--hhh-CcEEEEECCCCcCHHHHHHHhcCC
Confidence            76543    479999999999997532211122222111  111 579999999999999999987654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=1.3e-19  Score=135.57  Aligned_cols=80  Identities=21%  Similarity=0.240  Sum_probs=47.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc--c-----ccCccceeEEEE-----------------EEC---CeEEEEEEcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV--T-----TTPTIGFNVEAV-----------------EYK---NKSFCVWDVGG   70 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~--~-----~~~~~~~~~~~~-----------------~~~---~~~~~i~d~~g   70 (181)
                      ++|+++|.+|+|||||+|++++....  .     ..++.+.....+                 .+.   ...+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987621  1     122233221110                 111   25799999999


Q ss_pred             Chh----hHHHHH---hhccCCCEEEEEEECCCc
Q 030233           71 QNK----IRALWR---HYFRDTLGLTFVVDSSDR   97 (181)
Q Consensus        71 ~~~----~~~~~~---~~~~~~d~ii~v~d~~~~   97 (181)
                      ...    ...+..   ..++.+|++++|+|+.+.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            754    222333   346789999999999875

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.71  E-value=1.8e-17  Score=128.59  Aligned_cols=114  Identities=19%  Similarity=0.209  Sum_probs=80.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc--cccCccceeEE-EEEE----------------------------------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV--TTTPTIGFNVE-AVEY----------------------------------   58 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~--~~~~~~~~~~~-~~~~----------------------------------   58 (181)
                      ..++|+++|.+|+|||||+|++++..+.  ...+.+.++.. .+..                                  
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            4579999999999999999999998753  11111111110 0000                                  


Q ss_pred             -----CC---eEEEEEEcCCChh-----------hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC
Q 030233           59 -----KN---KSFCVWDVGGQNK-----------IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA  119 (181)
Q Consensus        59 -----~~---~~~~i~d~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  119 (181)
                           ..   ..+.+|||||...           +...+..++..+|++++|+|+++.........++..+. .   .+.
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-~---~~~  219 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-G---HED  219 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-T---CGG
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-h---cCC
Confidence                 00   3689999999764           55677778889999999999987554555555555443 2   368


Q ss_pred             eEEEEEeCCCCCCC
Q 030233          120 ALLVFANKQDLPNV  133 (181)
Q Consensus       120 piilv~nK~D~~~~  133 (181)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            99999999998763

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=125.36  Aligned_cols=156  Identities=10%  Similarity=0.163  Sum_probs=72.7

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccc---------cCccceeEEEE--EE--CCeEEEEEEcCCChhhH-------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT---------TPTIGFNVEAV--EY--KNKSFCVWDVGGQNKIR-------   75 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---------~~~~~~~~~~~--~~--~~~~~~i~d~~g~~~~~-------   75 (181)
                      -.++|+++|++|+|||||++++++..++..         .++.+.....+  +.  ....+++||++|.....       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            457899999999999999999998765211         11222111111  11  22478999999975531       


Q ss_pred             HH-------H-----------HhhccCCCEEEEEEECCCc-ccHHHHH-HHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC
Q 030233           76 AL-------W-----------RHYFRDTLGLTFVVDSSDR-ERISEAR-NELHQILSDNELSNAALLVFANKQDLPNVMP  135 (181)
Q Consensus        76 ~~-------~-----------~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  135 (181)
                      .+       .           ...+.++++.+++|+.... .+++... .++..+ .    .+.|+|+|+||+|+.....
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHHH
Confidence            11       0           1123344443444433322 3455554 344444 2    3689999999999875222


Q ss_pred             HHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          136 TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      ...+.... ...+...+++++++||.++.+++++|..+...+
T Consensus       185 v~~~k~~i-~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          185 CQQFKKQI-MKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHH-HHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHH-HHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            22111111 111123456799999999999999988887654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.71  E-value=5e-17  Score=109.70  Aligned_cols=173  Identities=16%  Similarity=0.244  Sum_probs=115.3

Q ss_pred             HHhhhhCCCCccEEEEEcCCC-CChHHHHHhhhcCC-cc-------cccC--ccceeEE-----EEEE------------
Q 030233            7 RLAKRFFPQCRIKLLMVGLDA-SGKTTILYKMKLGE-IV-------TTTP--TIGFNVE-----AVEY------------   58 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~~~G~~~-~GKssl~~~~~~~~-~~-------~~~~--~~~~~~~-----~~~~------------   58 (181)
                      ++.+++.++..+++++.|+.- .=..+|+.++.... ..       ....  ..|+...     .+++            
T Consensus         6 ~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~   85 (227)
T 3l82_B            6 SFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERD   85 (227)
T ss_dssp             CSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC------
T ss_pred             HHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhh
Confidence            456678899999999999642 44668999998765 11       1111  1112111     1111            


Q ss_pred             --------CCeEEEEEEcC------CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHH---HHHHcCCC-CCCCe
Q 030233           59 --------KNKSFCVWDVG------GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNEL---HQILSDNE-LSNAA  120 (181)
Q Consensus        59 --------~~~~~~i~d~~------g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~p  120 (181)
                              .-.++.....|      |+..++..|..+++++|++|||+|.+|++.+. ....+   ..++.... ..+.|
T Consensus        86 ~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gap  164 (227)
T 3l82_B           86 RAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRP  164 (227)
T ss_dssp             -------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSC
T ss_pred             hhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCe
Confidence                    01233344444      78888999999999999999999999886554 44444   34444432 36899


Q ss_pred             EEEEEeCC-CCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhccC
Q 030233          121 LLVFANKQ-DLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN  181 (181)
Q Consensus       121 iilv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  181 (181)
                      +++++||. |++...+..++.+.+.+.... +.+.+..|||.+|+|+.+-++||.+.+..++
T Consensus       165 LLVlANKqqDlp~Ams~~EI~e~L~L~~l~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          165 LLVLSCISQGDVKRMPCFYLAHELHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             EEEEEEESSTTSCBCCHHHHHHHTTGGGGC-SCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             EEEEeCCCcCccCCCCHHHHHHHcCCcCCC-CCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            99999995 788888999999999887664 7899999999999999999999999987653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.69  E-value=5.3e-17  Score=131.52  Aligned_cols=113  Identities=16%  Similarity=0.071  Sum_probs=85.6

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCC------------cc-------cccCccceeEEEEEEC---------------
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGE------------IV-------TTTPTIGFNVEAVEYK---------------   59 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~------------~~-------~~~~~~~~~~~~~~~~---------------   59 (181)
                      +.+..+|+++|++++|||||+++++...            +.       ....|+......+.+.               
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3456789999999999999999998641            11       1122333333334343               


Q ss_pred             -CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           60 -NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        60 -~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                       +..+.+|||||+.+|...+..+++.+|++|+|+|+.+..+++....|.. ...    .++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcc
Confidence             6789999999999999999999999999999999998877777554443 322    368999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.69  E-value=3.5e-17  Score=120.74  Aligned_cols=150  Identities=17%  Similarity=0.161  Sum_probs=87.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC------C--cccccCcc-----------------------------------cee
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG------E--IVTTTPTI-----------------------------------GFN   52 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~------~--~~~~~~~~-----------------------------------~~~   52 (181)
                      ....|+++|.+|+|||||+|++++.      .  .....|+.                                   +++
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t  152 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT  152 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence            3678999999999999999999862      1  00000000                                   000


Q ss_pred             EE------EEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233           53 VE------AVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFAN  126 (181)
Q Consensus        53 ~~------~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  126 (181)
                      ..      .+...+..+.++||+|....   .......+|.+++|+|+.+++..+.+..   .+      ...|.++|+|
T Consensus       153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN  220 (349)
T 2www_A          153 RTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT  220 (349)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred             HHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence            00      00125568899999995322   2334568999999999976533221111   11      2357899999


Q ss_pred             CCCCCCCCCH----HHHHhhhCcccc--CCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          127 KQDLPNVMPT----AEVADKLELYSL--GQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       127 K~D~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      |+|+.+....    ..+...+.....  ..+..+++.+||++|+|+++++++|.+.+
T Consensus       221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            9998642111    122222221110  11234789999999999999999998765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.68  E-value=2.7e-17  Score=114.05  Aligned_cols=149  Identities=17%  Similarity=0.198  Sum_probs=92.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-------ccCcc----------ceeEEEE------------------EEC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-------TTPTI----------GFNVEAV------------------EYK   59 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-------~~~~~----------~~~~~~~------------------~~~   59 (181)
                      .+..+|+++|.+|+|||||++++++.....       ..+..          +.....+                  ...
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            456789999999999999999998642110       00100          1111111                  113


Q ss_pred             CeEEEEEEcCCChhhHHHHHhhc-cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCH
Q 030233           60 NKSFCVWDVGGQNKIRALWRHYF-RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPT  136 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~  136 (181)
                      +..+.+|||+|....    +..+ ...+.+++|+|+.+....  ...+ ...      .+.|+++|+||+|+.+.  ...
T Consensus       108 ~~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~  174 (221)
T 2wsm_A          108 DCDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEAVGADV  174 (221)
T ss_dssp             TCSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred             CCCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcchhhHH
Confidence            457889999994111    1111 256889999998754321  1111 111      14688999999998542  244


Q ss_pred             HHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          137 AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      +++.......   ....+++++||++|+|++++++++.+.+..
T Consensus       175 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          175 EKMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            4444433211   234579999999999999999999987754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.67  E-value=7.2e-16  Score=122.58  Aligned_cols=155  Identities=15%  Similarity=0.150  Sum_probs=97.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccC--cc--------------------------------------------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTP--TI--------------------------------------------   49 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~--~~--------------------------------------------   49 (181)
                      .-++|+++|.+++|||||+|++++..+.+...  ++                                            
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            45799999999999999999999977521110  00                                            


Q ss_pred             ----cee----EEEEEE-CCeEEEEEEcCCChh-------------hHHHHHhhc-cCCCEEEEEEECCCcccHHHHHHH
Q 030233           50 ----GFN----VEAVEY-KNKSFCVWDVGGQNK-------------IRALWRHYF-RDTLGLTFVVDSSDRERISEARNE  106 (181)
Q Consensus        50 ----~~~----~~~~~~-~~~~~~i~d~~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~  106 (181)
                          ++.    ...+.. ....+.++||||...             .......++ ..+|++++|+|++....-......
T Consensus       130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                000    001111 234688999999432             333444444 478999999999864322222222


Q ss_pred             HHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233          107 LHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus       107 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      +..+ ..   .+.|+++|+||+|+.+.... ..+... ..........+++.+||++|.|++++++.+.+
T Consensus       210 l~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          210 AKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            3333 32   47899999999999764332 222221 11111223457899999999999999998876

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.66  E-value=1.3e-16  Score=113.41  Aligned_cols=116  Identities=12%  Similarity=-0.024  Sum_probs=68.9

Q ss_pred             eEEEEEEcCCChhhHHHH------HhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALW------RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM  134 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  134 (181)
                      ..+.+|||||........      ...+.. +++++++|+....+..................+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            479999999987654331      124456 8999999885433322222111111110011368999999999987532


Q ss_pred             CHHHHHhhhCc--------------------------cccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          135 PTAEVADKLEL--------------------------YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       135 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ..+++.+.+..                          .. .....+++++||++|+|++++++++.+.+.
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTE-VLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHH-HSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHH-hcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            22222221100                          00 012236899999999999999999988765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.66  E-value=5.5e-17  Score=128.07  Aligned_cols=156  Identities=17%  Similarity=0.180  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC--Ccc------------c-------ccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLG--EIV------------T-------TTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~--~~~------------~-------~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      +|+++|+.++|||||..+++..  ...            +       ...|+......+.+.+..++++|||||.+|...
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E   83 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE   83 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence            5899999999999999999631  110            0       122344444456778899999999999999999


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH---HHhhhCcc--------
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE---VADKLELY--------  146 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~---~~~~~~~~--------  146 (181)
                      ....++-+|++|+|+|+...-.- .....|....+.    ++|.++++||+|.........   +.+.+...        
T Consensus        84 v~raL~~~DgavlVVDa~~GV~~-qT~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~  158 (638)
T 3j25_A           84 VYRSLSVLDGAILLISAKDGVQA-QTRILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE  158 (638)
T ss_dssp             HHHHHTTCSEEECCEESSCTTCS-HHHHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHhCEEEEEEeCCCCCcH-HHHHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence            99999999999999999753221 223334444333    789999999999866443322   22211100        


Q ss_pred             ------------------------------------------------ccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          147 ------------------------------------------------SLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       147 ------------------------------------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                                                                      .....-.+++..||.+|.|++.+++.+.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcccc
Confidence                                                            00112357888999999999999999988765


Q ss_pred             c
Q 030233          179 V  179 (181)
Q Consensus       179 ~  179 (181)
                      .
T Consensus       239 ~  239 (638)
T 3j25_A          239 S  239 (638)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.64  E-value=1.3e-16  Score=117.43  Aligned_cols=108  Identities=14%  Similarity=0.112  Sum_probs=66.8

Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH-
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA-  137 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~-  137 (181)
                      .+..+.++||||.......   ....+|++++|+|+...+.+..+..   ..      .+.|.++|+||+|+.+..... 
T Consensus       147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred             cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence            4678999999996654432   3578999999999975432211100   00      145789999999987532222 


Q ss_pred             ---HHHhhhCcccc--CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          138 ---EVADKLELYSL--GQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       138 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                         ++...+.....  ..+..+++++||++|+|+++++++|.+.+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence               12221111100  112347899999999999999999988654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.64  E-value=6.6e-15  Score=108.35  Aligned_cols=80  Identities=24%  Similarity=0.239  Sum_probs=56.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc--cc-cCccceeEEEEEECC-----------------eEEEEEEcCCChhhHH
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV--TT-TPTIGFNVEAVEYKN-----------------KSFCVWDVGGQNKIRA   76 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~--~~-~~~~~~~~~~~~~~~-----------------~~~~i~d~~g~~~~~~   76 (181)
                      .++|+++|.+|+|||||+|++.+....  .+ ..|.+.+...+.+.+                 ..+.+|||||..++..
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            368999999999999999999987621  11 123333333444433                 5799999999876542


Q ss_pred             ----H---HHhhccCCCEEEEEEECCC
Q 030233           77 ----L---WRHYFRDTLGLTFVVDSSD   96 (181)
Q Consensus        77 ----~---~~~~~~~~d~ii~v~d~~~   96 (181)
                          +   ....++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                1   2345789999999999985

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.8e-14  Score=106.53  Aligned_cols=111  Identities=18%  Similarity=0.156  Sum_probs=74.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc--cc-ccCccceeEEEEEECCeEEEEEEcCCChh-------hHHHHHhhccCCCE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI--VT-TTPTIGFNVEAVEYKNKSFCVWDVGGQNK-------IRALWRHYFRDTLG   87 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~d~   87 (181)
                      .+|+++|.|++|||||+|++.+...  .. ...|.......+.+.+.++++.||||-..       ........++.+|+
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~  152 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL  152 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence            5899999999999999999998662  12 23455556667888999999999999422       11223455678999


Q ss_pred             EEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCC
Q 030233           88 LTFVVDSSDRER-ISEARNELHQILSDNELSNAALLVFANKQDL  130 (181)
Q Consensus        88 ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~  130 (181)
                      +++|+|++++.. ++.+...+...  .....+.|.++++||.|.
T Consensus       153 il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          153 LFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             EEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred             cccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence            999999987632 12222222221  112235677777888875

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.61  E-value=3.5e-14  Score=113.46  Aligned_cols=115  Identities=17%  Similarity=0.111  Sum_probs=80.1

Q ss_pred             CCCCcc-EEEEEcCCCCChHHHHHhhhcCC--------c------c-------cccCccceeEEEEEE-------CCeEE
Q 030233           13 FPQCRI-KLLMVGLDASGKTTILYKMKLGE--------I------V-------TTTPTIGFNVEAVEY-------KNKSF   63 (181)
Q Consensus        13 ~~~~~~-~i~~~G~~~~GKssl~~~~~~~~--------~------~-------~~~~~~~~~~~~~~~-------~~~~~   63 (181)
                      .|..++ +|+++|+.++|||||..+++...        .      .       ....|+......+.+       .++.+
T Consensus         8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i   87 (709)
T 4fn5_A            8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV   87 (709)
T ss_dssp             SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred             CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence            344555 59999999999999999996321        0      0       011222233333444       26899


Q ss_pred             EEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           64 CVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        64 ~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      +++|||||.+|.......++-+|++|+|+|+...-.- .....|....+.    ++|.++++||+|...
T Consensus        88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~-qT~~v~~~a~~~----~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP-QSETVWRQANKY----GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred             EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCch-hHHHHHHHHHHc----CCCeEEEEccccccC
Confidence            9999999999999999999999999999999754222 223344444443    799999999999865

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.61  E-value=1.1e-15  Score=107.96  Aligned_cols=111  Identities=21%  Similarity=0.331  Sum_probs=88.5

Q ss_pred             cCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHH---HHHcCCC-CCCCeEEEEEeC-CCCCCCCCHHHHHhh
Q 030233           68 VGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELH---QILSDNE-LSNAALLVFANK-QDLPNVMPTAEVADK  142 (181)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~piilv~nK-~D~~~~~~~~~~~~~  142 (181)
                      .+|+...+..|..+++++|++|||+|.+|++.+. ....+.   .++.... ..+.|+++++|| -|+....+..++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4578889999999999999999999999987654 333222   3343221 257999999996 589888999999999


Q ss_pred             hCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          143 LELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +.+.... +.+.+..|||.+|+|+.+-++|+.+.+.++
T Consensus       273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            9887664 789999999999999999999999998765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.56  E-value=3.5e-17  Score=113.85  Aligned_cols=59  Identities=15%  Similarity=0.188  Sum_probs=42.7

Q ss_pred             CeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          119 AALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       119 ~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      .|.++|+||+|+.+.  ...+++.......   ....+++++||++|+|++++|+++.+.+..+
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            577999999998642  2344443333211   2345799999999999999999999887654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.54  E-value=6.6e-14  Score=103.56  Aligned_cols=79  Identities=20%  Similarity=0.219  Sum_probs=53.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc--ccc-cCccceeEEEEEE---------------------CCeEEEEEEcCCChh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI--VTT-TPTIGFNVEAVEY---------------------KNKSFCVWDVGGQNK   73 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~--~~~-~~~~~~~~~~~~~---------------------~~~~~~i~d~~g~~~   73 (181)
                      ++|+++|.+|+|||||+|++.+...  ..+ ..|...+.....+                     ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5789999999999999999987531  111 1122222222222                     245799999999754


Q ss_pred             h-------HHHHHhhccCCCEEEEEEECCC
Q 030233           74 I-------RALWRHYFRDTLGLTFVVDSSD   96 (181)
Q Consensus        74 ~-------~~~~~~~~~~~d~ii~v~d~~~   96 (181)
                      .       .......++.+|++++|+|+.+
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            3       2334456789999999999975

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.51  E-value=2.9e-14  Score=104.61  Aligned_cols=152  Identities=14%  Similarity=0.135  Sum_probs=88.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc------CCc--ccccCc--------------cc-----eeEEE------------
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL------GEI--VTTTPT--------------IG-----FNVEA------------   55 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~------~~~--~~~~~~--------------~~-----~~~~~------------   55 (181)
                      .+...++++|++|+|||||++.+++      +..  ....+.              ++     .....            
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~  132 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  132 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence            4456899999999999999999974      221  000000              00     00000            


Q ss_pred             ----------EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030233           56 ----------VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA  125 (181)
Q Consensus        56 ----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  125 (181)
                                +...+..+.++||||...-..   .....+|.+++++|+...+..+.+....         ...+.++++
T Consensus       133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvl  200 (337)
T 2qm8_A          133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAV  200 (337)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEE
Confidence                      112577899999999644221   2346799999999986433221111101         123557788


Q ss_pred             eCCCCCCCCC-----HHHHHhhhCcccc--CCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          126 NKQDLPNVMP-----TAEVADKLELYSL--GQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       126 nK~D~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ||+|+.....     .+.+.........  ..+..+++.+||++|.|++++++.|.+...
T Consensus       201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9999754211     1222222222110  011346888999999999999999987653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.34  E-value=7.8e-13  Score=95.72  Aligned_cols=100  Identities=19%  Similarity=0.147  Sum_probs=72.1

Q ss_pred             ChhhHHHHHhhccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccC
Q 030233           71 QNKIRALWRHYFRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLG  149 (181)
Q Consensus        71 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~  149 (181)
                      ++++..+...++.++|++++|+|+++++ ++..+..|+..+..    .++|+++|+||+|+.+....+........  +.
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~--~~  139 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISI--YR  139 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH--HH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHH--HH
Confidence            5556666667899999999999999886 88888888876543    47999999999999753210111111111  11


Q ss_pred             CccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          150 QRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      ..+.+++++||++|+|++++++.+...
T Consensus       140 ~~g~~~~~~SA~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          140 DAGYDVLKVSAKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             HTTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred             HCCCeEEEEECCCCCCHHHHHhhccCc
Confidence            224579999999999999999887653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.33  E-value=3.7e-12  Score=94.67  Aligned_cols=84  Identities=19%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEEC-----------------CeEEEEEEcCCChhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEYK-----------------NKSFCVWDVGGQNKI   74 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------------~~~~~i~d~~g~~~~   74 (181)
                      ...++|+++|.+|+|||||+|++.+.....   ...|...+...+.+.                 ...+.+|||||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            456899999999999999999999875311   122333334444432                 346999999997764


Q ss_pred             HH-------HHHhhccCCCEEEEEEECCCcc
Q 030233           75 RA-------LWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        75 ~~-------~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      ..       .+...++.+|++++|+|+.+.+
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            43       4566788999999999997543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.12  E-value=1.8e-10  Score=86.37  Aligned_cols=138  Identities=16%  Similarity=0.182  Sum_probs=72.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEE---C-C--eEEEEEEcCCChhh------------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEY---K-N--KSFCVWDVGGQNKI------------   74 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~---~-~--~~~~i~d~~g~~~~------------   74 (181)
                      ..++++++|++|+|||||+|.++|......   ....+.....+.+   . .  ..+.++|++|....            
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            346799999999999999999998753211   1112222222211   1 1  37899999984321            


Q ss_pred             --HHHHHhhc-------------cC--CCE-EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH
Q 030233           75 --RALWRHYF-------------RD--TLG-LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT  136 (181)
Q Consensus        75 --~~~~~~~~-------------~~--~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~  136 (181)
                        ...+..++             .+  +|+ ++++.|...  ++...+..+...+.    .+.|+|+|.||+|.......
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~  194 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD----SKVNIIPIIAKADAISKSEL  194 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh----hCCCEEEEEcchhccchHHH
Confidence              11111111             11  234 445556543  33334333444433    47899999999998764333


Q ss_pred             HHHHhhhCccccCCccEEEEEeec
Q 030233          137 AEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      ..+...+.. .+...+++++.+|.
T Consensus       195 ~~l~~~I~~-~L~~~gi~I~~is~  217 (427)
T 2qag_B          195 TKFKIKITS-ELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHH-HHBTTBCCCCCCC-
T ss_pred             HHHHHHHHH-HHHHcCCcEEecCC
Confidence            333333321 11334556666664

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.11  E-value=6.2e-11  Score=87.96  Aligned_cols=101  Identities=20%  Similarity=0.130  Sum_probs=68.0

Q ss_pred             CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCc--c
Q 030233           70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLEL--Y  146 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--~  146 (181)
                      ..++|++....+++.++++++|+|+.++.     ..|...+.+.  ..+.|+++|+||+|+.+... .+.+.+....  .
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence            46889999999999999999999998753     2232222221  13689999999999975432 2233222110  0


Q ss_pred             ccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      ..+....+++.+||++|+|++++++.+.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            0111122699999999999999999997654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.10  E-value=1.8e-09  Score=82.83  Aligned_cols=153  Identities=16%  Similarity=0.099  Sum_probs=86.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhh------cCCcc--c---ccCc-----------cceeEEE-----------------E
Q 030233           16 CRIKLLMVGLDASGKTTILYKMK------LGEIV--T---TTPT-----------IGFNVEA-----------------V   56 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~------~~~~~--~---~~~~-----------~~~~~~~-----------------~   56 (181)
                      +...|+++|.+|+||||+++.++      +....  .   +.+.           .++....                 .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999998      44311  0   0110           0111111                 0


Q ss_pred             EECCeEEEEEEcCCChhhH----HHHHhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCC
Q 030233           57 EYKNKSFCVWDVGGQNKIR----ALWRHY--FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQD  129 (181)
Q Consensus        57 ~~~~~~~~i~d~~g~~~~~----~~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D  129 (181)
                      ...+..+.++||||.....    ......  ...+|.+++|+|+............+..        ..|+ .+|+||+|
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~--------~~~i~gvVlNK~D  251 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKD--------KVDVASVIVTKLD  251 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHH--------HHCCCCEEEECTT
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHh--------hcCceEEEEeCCc
Confidence            1156789999999965321    111111  2268999999999764332222121211        2464 89999999


Q ss_pred             CCCCCCH-HHHHhhhCccc--c--C--Cc----cEEEEEeeccCCCC-HHHHHHHHHhh
Q 030233          130 LPNVMPT-AEVADKLELYS--L--G--QR----RWSIQSCSAISGQG-LYEGLDWLSNN  176 (181)
Q Consensus       130 ~~~~~~~-~~~~~~~~~~~--~--~--~~----~~~~~~~Sa~~~~~-i~~l~~~i~~~  176 (181)
                      ....... ..+........  .  .  ..    ..+.+.+|+..|.| ++++++++.+.
T Consensus       252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            8753322 12222222110  0  0  00    11234579999999 99999999865

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.10  E-value=8.3e-12  Score=92.69  Aligned_cols=116  Identities=11%  Similarity=0.152  Sum_probs=69.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC-----CcccccCccceeEEEEEE-CCeEEEEEEcCCChhhH--------HHHHhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG-----EIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIR--------ALWRHYF   82 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~--------~~~~~~~   82 (181)
                      ..+++++|.+|+|||||+|++.+.     ......+.++++.....+ -+..+.++||||-....        ......+
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~  241 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT  241 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence            457999999999999999999986     333333444544444333 22348999999943211        1122222


Q ss_pred             --cCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH
Q 030233           83 --RDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA  137 (181)
Q Consensus        83 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~  137 (181)
                        ...+.++++++....--+..+.. + ..+..   .+.|+++++||.|.......+
T Consensus       242 ~~~~i~~~~~~l~~~~~~~~g~l~~-l-~~l~~---~~~~~~~v~~k~d~~~~~~~~  293 (369)
T 3ec1_A          242 PKREIHPRVYQLNEGQTLFFGGLAR-L-DYIKG---GRRSFVCYMANELTVHRTKLE  293 (369)
T ss_dssp             CSSCCCCEEEEECTTEEEEETTTEE-E-EEEES---SSEEEEEEECTTSCEEEEEGG
T ss_pred             cccccCceEEEEcCCceEEECCEEE-E-EEccC---CCceEEEEecCCcccccccHH
Confidence              56899999999842210001000 1 11122   468999999999986543333

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.05  E-value=1e-09  Score=81.79  Aligned_cols=82  Identities=20%  Similarity=0.224  Sum_probs=57.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccc----cCccceeEEEEEECC-----------------eEEEEEEcCCCh-
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTT----TPTIGFNVEAVEYKN-----------------KSFCVWDVGGQN-   72 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----------------~~~~i~d~~g~~-   72 (181)
                      ....+++++|++|+|||||+|.+++......    ..|...+...+.+.+                 ..+.+||+||.. 
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3467999999999999999999998653111    113334444455543                 468999999932 


Q ss_pred             ------hhHHHHHhhccCCCEEEEEEECCC
Q 030233           73 ------KIRALWRHYFRDTLGLTFVVDSSD   96 (181)
Q Consensus        73 ------~~~~~~~~~~~~~d~ii~v~d~~~   96 (181)
                            .+.......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  233345566788999999999863

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.02  E-value=1.7e-10  Score=85.65  Aligned_cols=102  Identities=15%  Similarity=0.113  Sum_probs=68.3

Q ss_pred             CChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCc--c
Q 030233           70 GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLEL--Y  146 (181)
Q Consensus        70 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~--~  146 (181)
                      .+++|++....+++.++++++|+|+.++.+  .....+...+     .+.|+++|+||+|+.+... .+.+.+....  .
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence            478899999999899999999999998753  1111122221     3689999999999976432 2333322211  1


Q ss_pred             ccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ..+.....++.+||++|.|++++++.+.+...
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            11112236899999999999999999976543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.01  E-value=3e-10  Score=81.36  Aligned_cols=102  Identities=17%  Similarity=0.117  Sum_probs=67.4

Q ss_pred             EEEcCCCh-hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhh
Q 030233           65 VWDVGGQN-KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKL  143 (181)
Q Consensus        65 i~d~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~  143 (181)
                      +-..||+. .........+..+|+++.|+|+.++.+...  ..+..++     .+.|.++|+||+|+.+....+...+.+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            45678876 455667778899999999999998866542  1222332     368999999999997622222222222


Q ss_pred             CccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          144 ELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                           ...+.+++.+||.+|.|++++++.+.+.+.
T Consensus        76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             -----HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence                 122347899999999999999998877654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.01  E-value=9.7e-11  Score=86.92  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC------cccccCccceeEEEEEE-CCeEEEEEEcCCChhhH--------HHHHhh
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE------IVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQNKIR--------ALWRHY   81 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~~~--------~~~~~~   81 (181)
                      ..+++++|.+|+|||||+|++.+..      .....+.++++.....+ -+..+.++||||-....        ......
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~  239 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI  239 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence            4689999999999999999998853      22234455555444333 12238999999942211        112222


Q ss_pred             --ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHH
Q 030233           82 --FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVA  140 (181)
Q Consensus        82 --~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~  140 (181)
                        ....+.+++++|....--+..+. .+ ..+..   .+.|+++++||+|.......+...
T Consensus       240 ~~~~~i~~~~~~l~~~~~~~~g~l~-~~-d~l~~---~~~~~~~v~nk~d~~~~~~~~~~~  295 (368)
T 3h2y_A          240 TPTKEIKPMVFQLNEEQTLFFSGLA-RF-DYVSG---GRRAFTCHFSNRLTIHRTKLEKAD  295 (368)
T ss_dssp             SCSSCCCCEEEEECTTEEEEETTTE-EE-EEEES---SSEEEEEEECTTSCEEEEEHHHHH
T ss_pred             ccccccCceEEEEcCCCEEEEcceE-EE-EEecC---CCceEEEEecCccccccccHHHHH
Confidence              25678899999874210000100 01 11122   468999999999987654444433

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.99  E-value=1.4e-09  Score=77.32  Aligned_cols=112  Identities=13%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccccc-------Cccc-eeEEEEEE------CCeEEEEEEcCCChh---------
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTT-------PTIG-FNVEAVEY------KNKSFCVWDVGGQNK---------   73 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~-------~~~~-~~~~~~~~------~~~~~~i~d~~g~~~---------   73 (181)
                      .++++++|++|+|||||+|.+++...+...       +... .....+.+      -...++++|++|...         
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            578999999999999999999975422211       0000 01111211      123789999998321         


Q ss_pred             -hHH--------HHHhh----------ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233           74 -IRA--------LWRHY----------FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus        74 -~~~--------~~~~~----------~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                       ...        .....          +..+++.++++|... .+++.....+...+..   . .++|+|++|+|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L~~---~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHLSK---V-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHHHT---T-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHHHh---c-CcEEEEEeccccCCH
Confidence             010        01111          113588899998642 2233333333333333   2 899999999998763

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.95  E-value=9.9e-09  Score=77.01  Aligned_cols=157  Identities=12%  Similarity=0.128  Sum_probs=86.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccccc-Ccc-c--ee--EEEEEECC-eEEEEEEcCCChh----hHHH-HHhhcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTT-PTI-G--FN--VEAVEYKN-KSFCVWDVGGQNK----IRAL-WRHYFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~-~~~-~--~~--~~~~~~~~-~~~~i~d~~g~~~----~~~~-~~~~~~   83 (181)
                      ....++++|++|+|||||+|.++|-..+... .+. +  ++  ....+... ..+.++|++|...    .... ....+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3458999999999999999999985422211 111 0  00  11112222 2589999998432    1111 111233


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC---------CCCCHHHHHhhhCccc------c
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP---------NVMPTAEVADKLELYS------L  148 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~---------~~~~~~~~~~~~~~~~------~  148 (181)
                      ..+..++ ++....   ...+..+...+..   .+.|+++|.||.|+.         +....+++.+.+....      .
T Consensus       148 ~~~~~~~-lS~G~~---~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          148 EYDFFII-ISATRF---KKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             GCSEEEE-EESSCC---CHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCeEE-eCCCCc---cHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455555 776521   1222222222222   368999999999863         2223343333322110      0


Q ss_pred             CCccEEEEEeec--cCCCCHHHHHHHHHhhhhc
Q 030233          149 GQRRWSIQSCSA--ISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       149 ~~~~~~~~~~Sa--~~~~~i~~l~~~i~~~~~~  179 (181)
                      +.....++.+|+  .++.|++++.+.+.+.+.+
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence            011225788999  6667799999999887754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.90  E-value=9.8e-10  Score=78.67  Aligned_cols=58  Identities=21%  Similarity=0.306  Sum_probs=36.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQ   71 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~   71 (181)
                      ....++++++|.+|+|||||+|++.+.......+.++++.....+ .+..+.++||||-
T Consensus       117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~  175 (282)
T 1puj_A          117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGI  175 (282)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCC
T ss_pred             CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCCCEEEEECcCc
Confidence            346789999999999999999999988755555555554433111 2347899999994

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.86  E-value=5.4e-10  Score=79.18  Aligned_cols=55  Identities=22%  Similarity=0.309  Sum_probs=35.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCCCh
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGGQN   72 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g~~   72 (181)
                      ++++++|.+|+|||||+|++.+.......++++++.....+ .+..+.+|||||..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~  155 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGIL  155 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEEC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcc
Confidence            69999999999999999999988766666666655432222 24578999999943

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.68  E-value=1.5e-08  Score=76.66  Aligned_cols=153  Identities=17%  Similarity=0.181  Sum_probs=80.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC------Cc--cc---ccCc-----------cc--------eeEE-------EE-EE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG------EI--VT---TTPT-----------IG--------FNVE-------AV-EY   58 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~------~~--~~---~~~~-----------~~--------~~~~-------~~-~~   58 (181)
                      ...|+++|.+|+||||+++.++..      ..  ..   +.+.           .+        .+..       .+ ..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            357999999999999999999762      10  00   0000           00        0000       00 01


Q ss_pred             CCeEEEEEEcCCChhhHHH----HH--hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCC-e-EEEEEeCCCC
Q 030233           59 KNKSFCVWDVGGQNKIRAL----WR--HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNA-A-LLVFANKQDL  130 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~----~~--~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D~  130 (181)
                      .+..+.++||||.......    ..  .....+|.+++|+|+.....   .......+ ..    .. | ..+|+||+|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~~----~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-KE----AVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-HT----TSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-hh----cccCCeEEEEeCCCC
Confidence            5678999999996543211    11  11225899999999864431   11222222 21    34 4 7899999998


Q ss_pred             CCCCC-HHHHHhhhCccc--c--C------CccEEEEEeeccCCCC-HHHHHHHHHhhh
Q 030233          131 PNVMP-TAEVADKLELYS--L--G------QRRWSIQSCSAISGQG-LYEGLDWLSNNI  177 (181)
Q Consensus       131 ~~~~~-~~~~~~~~~~~~--~--~------~~~~~~~~~Sa~~~~~-i~~l~~~i~~~~  177 (181)
                      ..... ...+........  .  +      ....+...+|+..|.| +..+++.+.+.+
T Consensus       251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~  309 (432)
T 2v3c_C          251 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV  309 (432)
T ss_dssp             CSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred             ccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            54221 111222221110  0  0      0011223567778887 777666665443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.54  E-value=1.6e-07  Score=70.92  Aligned_cols=109  Identities=20%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc------CCc-----ccccC-----------ccceeEEEE-----------------E
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL------GEI-----VTTTP-----------TIGFNVEAV-----------------E   57 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~------~~~-----~~~~~-----------~~~~~~~~~-----------------~   57 (181)
                      +..|+++|.+|+||||++..++.      ...     ..+.+           ..+......                 .
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            56799999999999999998873      221     00101           111111110                 0


Q ss_pred             ECCeEEEEEEcCCChhh-----HHHH-HhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           58 YKNKSFCVWDVGGQNKI-----RALW-RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        58 ~~~~~~~i~d~~g~~~~-----~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      ..+..+.++||||....     ..+. ......+|.+++|+|+..........   ..+...    -.+..+|+||.|..
T Consensus       180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSSC
T ss_pred             hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCCc
Confidence            03478999999994321     1111 11223579999999997543322222   222222    23557899999986


Q ss_pred             C
Q 030233          132 N  132 (181)
Q Consensus       132 ~  132 (181)
                      .
T Consensus       253 ~  253 (443)
T 3dm5_A          253 A  253 (443)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.53  E-value=1.5e-07  Score=73.63  Aligned_cols=59  Identities=17%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCc-cceeEEEEEE-------CCeEEEEEEcCCCh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPT-IGFNVEAVEY-------KNKSFCVWDVGGQN   72 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~-~~~~~~~~~~-------~~~~~~i~d~~g~~   72 (181)
                      .....+|+++|.+|+|||||+|++++.... ....+ .+.+.....+       .+..+.++||||-.
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            456688999999999999999999987632 22222 2333222222       46789999999943

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.45  E-value=4.3e-07  Score=71.63  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      .++++|++|+|||||++.++|-..+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            5999999999999999999986533

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.30  E-value=6.4e-08  Score=68.53  Aligned_cols=94  Identities=10%  Similarity=0.016  Sum_probs=59.3

Q ss_pred             cCCChh-hHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc
Q 030233           68 VGGQNK-IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY  146 (181)
Q Consensus        68 ~~g~~~-~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~  146 (181)
                      .|||.. ........+..+|+++.|+|+.++.+.....  +. +     . ++|.++|+||+|+.+....+...+.+.  
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~--   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK--   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence            466542 2345566778999999999998876543211  11 1     1 689999999999976322222222221  


Q ss_pred             ccCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          147 SLGQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                         ..+.++ .+||.+|.|++++++.+.+.
T Consensus        73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           73 ---KQGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             ---HTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             ---HcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence               123356 99999999999999887653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.29  E-value=1.9e-07  Score=67.45  Aligned_cols=85  Identities=9%  Similarity=0.027  Sum_probs=56.0

Q ss_pred             hhccCCCEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC----HHHHHhhhCccccCCccEE
Q 030233           80 HYFRDTLGLTFVVDSSDRER-ISEARNELHQILSDNELSNAALLVFANKQDLPNVMP----TAEVADKLELYSLGQRRWS  154 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~  154 (181)
                      ....++|.+++|+|+.+|.. ...+..++.. ...   .++|.++|+||+|+.+...    .+.+.+.+     ...+.+
T Consensus        82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~-~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~g~~  152 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVL-VEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNIGYD  152 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHH-HHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHHTCC
T ss_pred             HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHH-HHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhCCCe
Confidence            36778999999999987643 3333333322 223   4789999999999986432    22333332     122346


Q ss_pred             EEEeeccCCCCHHHHHHHH
Q 030233          155 IQSCSAISGQGLYEGLDWL  173 (181)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~i  173 (181)
                      ++.+||.+|.|++++++..
T Consensus       153 v~~~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          153 VYLTSSKDQDSLADIIPHF  171 (307)
T ss_dssp             EEECCHHHHTTCTTTGGGG
T ss_pred             EEEEecCCCCCHHHHHhhc
Confidence            8999999999988876543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.19  E-value=3e-07  Score=70.39  Aligned_cols=96  Identities=26%  Similarity=0.296  Sum_probs=55.7

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEE--EE--CCeEEEEEEcCCChh--hHHHH--------H
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAV--EY--KNKSFCVWDVGGQNK--IRALW--------R   79 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~i~d~~g~~~--~~~~~--------~   79 (181)
                      ...+..|+++|.+|+||||+.++++........++..+....+  ..  ......+||..|.+.  .+..+        .
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999997543211112211110000  00  113346789888632  23322        4


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHH
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQI  110 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~  110 (181)
                      .++....+.++|+|.++. +......|+..+
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~  145 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFG  145 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence            566667888999999886 444444444443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.09  E-value=5.4e-06  Score=59.71  Aligned_cols=108  Identities=20%  Similarity=0.203  Sum_probs=61.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc------CCc-----ccccC-----------ccceeEEE-----------------EE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL------GEI-----VTTTP-----------TIGFNVEA-----------------VE   57 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~------~~~-----~~~~~-----------~~~~~~~~-----------------~~   57 (181)
                      .-.++++|.+|+||||++..+++      ...     ....+           ..++....                 ..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            34688999999999999998873      220     00000           00111000                 00


Q ss_pred             ECCeEEEEEEcCCChh--hHH-HHH-----hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCC
Q 030233           58 YKNKSFCVWDVGGQNK--IRA-LWR-----HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQ  128 (181)
Q Consensus        58 ~~~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~  128 (181)
                      ..+..+.++||||...  ... ...     .....+|.+++|+|+....   ........+..     ..+ ..+|+||.
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~  249 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKM  249 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECG
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCC
Confidence            1456899999999665  321 111     1334689999999986432   22222222221     244 67889999


Q ss_pred             CCCC
Q 030233          129 DLPN  132 (181)
Q Consensus       129 D~~~  132 (181)
                      |...
T Consensus       250 D~~~  253 (297)
T 1j8m_F          250 DGTA  253 (297)
T ss_dssp             GGCT
T ss_pred             CCCc
Confidence            9753

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.07  E-value=6.5e-06  Score=62.17  Aligned_cols=109  Identities=19%  Similarity=0.218  Sum_probs=61.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc------CCc-----cccc-----------CccceeEEEE-----------------E
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL------GEI-----VTTT-----------PTIGFNVEAV-----------------E   57 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~------~~~-----~~~~-----------~~~~~~~~~~-----------------~   57 (181)
                      ...|+++|++|+||||++..++.      ...     ..+.           ...+......                 .
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            45689999999999999998873      221     0000           0111111100                 0


Q ss_pred             ECCeEEEEEEcCCChh------hHHHHHh--hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030233           58 YKNKSFCVWDVGGQNK------IRALWRH--YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD  129 (181)
Q Consensus        58 ~~~~~~~i~d~~g~~~------~~~~~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D  129 (181)
                      ..+..+.++||||...      +......  .....+.+++|+|+............+...       -.+..+++||.|
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD  249 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD  249 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred             hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence            1357889999999533      1111111  112468999999997543333333333321       235678999999


Q ss_pred             CCC
Q 030233          130 LPN  132 (181)
Q Consensus       130 ~~~  132 (181)
                      ...
T Consensus       250 ~~a  252 (433)
T 3kl4_A          250 GTA  252 (433)
T ss_dssp             GCS
T ss_pred             ccc
Confidence            753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.01  E-value=8.5e-06  Score=60.03  Aligned_cols=86  Identities=15%  Similarity=0.073  Sum_probs=52.5

Q ss_pred             hccCCCEEEEEEECCCccc-HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEee
Q 030233           81 YFRDTLGLTFVVDSSDRER-ISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      ...++|.+++|.+. +|.. ...+..++... ..   .++|.++|+||+|+.+....+.+......  +...+.+++.+|
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a-~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~--y~~~G~~v~~~S  199 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGC-ET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDI--YRNIGYRVLMVS  199 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHH-HH---HTCEEEEEEECGGGCCHHHHHHHHHHHHH--HHTTTCCEEECB
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCchhHHHHHHHHHH--HHhCCCcEEEEe
Confidence            45788999988665 4543 33333333222 22   36888999999999863221112222211  123345699999


Q ss_pred             ccCCCCHHHHHHHH
Q 030233          160 AISGQGLYEGLDWL  173 (181)
Q Consensus       160 a~~~~~i~~l~~~i  173 (181)
                      |.+|.|++++...+
T Consensus       200 a~~~~gl~~L~~~~  213 (358)
T 2rcn_A          200 SHTQDGLKPLEEAL  213 (358)
T ss_dssp             TTTTBTHHHHHHHH
T ss_pred             cCCCcCHHHHHHhc
Confidence            99999999987654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.78  E-value=2.6e-05  Score=59.13  Aligned_cols=25  Identities=16%  Similarity=0.130  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+-.-|.|+|++++|||+|+|++++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            3445699999999999999999986

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.77  E-value=0.00019  Score=54.40  Aligned_cols=108  Identities=21%  Similarity=0.252  Sum_probs=60.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhh-------cCCcc-----cccC-----------ccceeEEE--------------E---
Q 030233           17 RIKLLMVGLDASGKTTILYKMK-------LGEIV-----TTTP-----------TIGFNVEA--------------V---   56 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~-------~~~~~-----~~~~-----------~~~~~~~~--------------~---   56 (181)
                      ...|+++|.+|+||||++..++       +....     .+.+           ..+.....              +   
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~  179 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA  179 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence            3468899999999999998887       32210     1110           00111000              0   


Q ss_pred             EECCeEEEEEEcCCChhhH-HHH-----HhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCC
Q 030233           57 EYKNKSFCVWDVGGQNKIR-ALW-----RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQD  129 (181)
Q Consensus        57 ~~~~~~~~i~d~~g~~~~~-~~~-----~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D  129 (181)
                      ...+..+.++||||..... ...     ......++.+++|+|+......-.   ....+-.     ..+ .-+|+||.|
T Consensus       180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~D  251 (433)
T 2xxa_A          180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKVD  251 (433)
T ss_dssp             HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECTT
T ss_pred             HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecCC
Confidence            0146789999999964321 111     122346899999999874332222   2222211     233 246899999


Q ss_pred             CCC
Q 030233          130 LPN  132 (181)
Q Consensus       130 ~~~  132 (181)
                      ...
T Consensus       252 ~~~  254 (433)
T 2xxa_A          252 GDA  254 (433)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.72  E-value=1.8e-05  Score=52.63  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+++++|++|+|||||++.+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.67  E-value=4.4e-05  Score=51.95  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=27.4

Q ss_pred             hHHHHhhhhC--CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            4 LISRLAKRFF--PQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         4 ~~~~~~~~~~--~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +...+.++..  ..+...++++|++|+|||||++.+++.
T Consensus         7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A            7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3444444433  345678999999999999999998764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.61  E-value=3.8e-05  Score=51.07  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -.++++|++|||||||++.+.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.56  E-value=3.7e-05  Score=51.97  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .++++|++|+|||||++.+++
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999976

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.50  E-value=8.7e-06  Score=58.80  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -.++++|++|+|||||+|.+++..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998765

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.50  E-value=5.2e-05  Score=51.26  Aligned_cols=23  Identities=13%  Similarity=0.254  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      --++++|++||||||+++.+++.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.49  E-value=5.9e-05  Score=50.41  Aligned_cols=23  Identities=35%  Similarity=0.293  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -.++++|++|+||||+++.+++.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.49  E-value=7.8e-05  Score=50.32  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+++.--++++|++|+|||||++.+++.
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3445557899999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.48  E-value=5.5e-05  Score=51.43  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -++++|++|+|||||++.+++-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47999999999999999998743

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.46  E-value=7e-05  Score=49.65  Aligned_cols=27  Identities=22%  Similarity=0.133  Sum_probs=22.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      ...-.++++|++|+|||||++.+++.-
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            334568999999999999999987643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.45  E-value=6.5e-05  Score=51.65  Aligned_cols=24  Identities=8%  Similarity=0.231  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      --++++|++|+|||||++.+++..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            357999999999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.44  E-value=6.5e-05  Score=51.58  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -.++++|++|+|||||++.+++-.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            357999999999999999998743

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.44  E-value=0.00093  Score=44.98  Aligned_cols=69  Identities=10%  Similarity=-0.008  Sum_probs=46.9

Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCC-CCCCCeEEEEEeCCCCC
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDN-ELSNAALLVFANKQDLP  131 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~  131 (181)
                      ....+.++|+|+..  .......+..+|.+++++..+. .+ ......+..+.... ..++.++.+|+|+.|..
T Consensus        74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            35789999999865  2334456667999999998864 34 55555555554322 12457889999999954

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.44  E-value=6.9e-05  Score=49.41  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -++++|++|||||||++.+.+
T Consensus        11 i~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHcc
Confidence            479999999999999997553

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.43  E-value=9.2e-05  Score=51.70  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      +...|+++|++||||||+++.++
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45679999999999999999998

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.42  E-value=0.00011  Score=49.04  Aligned_cols=33  Identities=30%  Similarity=0.257  Sum_probs=24.3

Q ss_pred             HhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         8 ~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +.+....++...|++.|.+|+||||+++.+...
T Consensus         4 ~~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A            4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             ----CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            334445566778999999999999999988653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.42  E-value=0.0001  Score=53.16  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      -.++++|++|+|||||+|.+. ...
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            467999999999999999998 543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.41  E-value=7.9e-05  Score=51.78  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|++|||||||++.+++-..
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            579999999999999999987543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.39  E-value=9.3e-05  Score=50.31  Aligned_cols=25  Identities=28%  Similarity=0.226  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +...++++|++|||||||++.+.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998763

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.38  E-value=0.00014  Score=48.43  Aligned_cols=29  Identities=21%  Similarity=0.292  Sum_probs=23.9

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +.+++...|+++|.+||||||+.+.+...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34455678999999999999999999765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.37  E-value=9.7e-05  Score=50.95  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.37  E-value=9.6e-05  Score=48.13  Aligned_cols=25  Identities=32%  Similarity=0.301  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .-.++++|+.|+|||||++.+++.-
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3458999999999999999998865

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.33  E-value=0.00012  Score=51.07  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.33  E-value=0.00015  Score=49.27  Aligned_cols=25  Identities=16%  Similarity=0.205  Sum_probs=21.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .--|+++|++|+||||+++.+++..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4468999999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.33  E-value=8.4e-05  Score=49.72  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |+++||+|+|||||+++++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.32  E-value=0.00012  Score=48.04  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..|+++|++||||||+.+.+.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.31  E-value=0.00015  Score=48.98  Aligned_cols=25  Identities=16%  Similarity=0.256  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      ...++++|++||||||+++.+.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4568999999999999999998754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.31  E-value=0.00012  Score=52.00  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57999999999999999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.31  E-value=0.00014  Score=53.65  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      -.++++|++|+|||||+|.+++...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             CEEEEECCCCccHHHHHHHHhcccc
Confidence            3689999999999999999998654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.31  E-value=0.00013  Score=51.60  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.30  E-value=0.00014  Score=49.86  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.29  E-value=0.00015  Score=50.45  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|++|+|||||++.+++-..
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            579999999999999999987643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.29  E-value=0.00016  Score=48.77  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ....++++|++||||||+++.+++
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.28  E-value=0.00014  Score=51.45  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57999999999999999998754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.27  E-value=0.00014  Score=51.20  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998754

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.27  E-value=0.00017  Score=47.18  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCChHHHHHhh
Q 030233           18 IKLLMVGLDASGKTTILYKM   37 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~   37 (181)
                      +.|++.|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.27  E-value=0.00032  Score=46.37  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=25.0

Q ss_pred             HHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            7 RLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+.+.......-.+++.|++|+|||++++.++..
T Consensus        33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            3333333344567899999999999999988754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.27  E-value=0.00018  Score=47.88  Aligned_cols=23  Identities=17%  Similarity=0.101  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|++.|++||||||+++.+..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.26  E-value=0.00017  Score=50.37  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.26  E-value=0.00017  Score=50.55  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.26  E-value=0.00015  Score=50.10  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.26  E-value=0.00016  Score=48.96  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..|+++|++||||||+++.+...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.25  E-value=0.00016  Score=51.13  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            57999999999999999998754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.25  E-value=0.00015  Score=48.39  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .++++|++|+||||+++.+++
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.25  E-value=0.00027  Score=53.27  Aligned_cols=22  Identities=45%  Similarity=0.564  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.++++|++|+||||++..+++
T Consensus        99 ~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           99 NLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3588899999999999988864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.24  E-value=0.00016  Score=50.37  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.24  E-value=0.0002  Score=47.85  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=20.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...|++.|.+||||||+.+.++.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999998864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.24  E-value=0.00017  Score=50.80  Aligned_cols=23  Identities=26%  Similarity=0.262  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.24  E-value=0.00017  Score=50.57  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|++|+|||||++.++|-..
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            579999999999999999987643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.24  E-value=0.00015  Score=48.64  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .++++|++|+|||||++.+++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4799999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.23  E-value=0.00013  Score=49.69  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .++++|++|+|||||++.+++-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999886

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.23  E-value=0.00024  Score=48.04  Aligned_cols=25  Identities=36%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .....++++|++|+||||+++.+.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557799999999999999998875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.22  E-value=0.0002  Score=51.62  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      -.++++|++|+|||||+|.+.+...+
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccc
Confidence            36799999999999999999886543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.22  E-value=0.00024  Score=46.78  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...++++|++|+||||+++.+.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.22  E-value=0.00022  Score=47.03  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..|++.|.+||||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999986

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.22  E-value=0.00018  Score=50.45  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .++++|++|+|||||++.++|-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999985

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.21  E-value=0.00025  Score=46.71  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..|++.|.+||||||+.+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.21  E-value=0.00019  Score=50.85  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .++++|++|+|||||++.++|-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999999985

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.21  E-value=0.0002  Score=50.47  Aligned_cols=23  Identities=30%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58999999999999999998753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.20  E-value=0.00017  Score=50.87  Aligned_cols=23  Identities=30%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      =.++++|++||||||+++.+++-
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            36899999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.20  E-value=0.00021  Score=48.68  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++|++.|++||||||+.+.++.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999854

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.20  E-value=0.00033  Score=50.90  Aligned_cols=26  Identities=27%  Similarity=0.281  Sum_probs=22.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...++-|+++|++|||||||++.+.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988854

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.20  E-value=0.00037  Score=50.52  Aligned_cols=27  Identities=19%  Similarity=0.091  Sum_probs=22.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..+..-++++|++|||||||++.+++-
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence            345677999999999999999998763

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.20  E-value=0.00019  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.20  E-value=0.00021  Score=50.91  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57999999999999999998754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.20  E-value=0.00022  Score=46.66  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++.|++||||||+.+.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.20  E-value=0.00021  Score=49.04  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|+++|++||||||+.+.+.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.19  E-value=0.0003  Score=47.41  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=22.5

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...+.|++.|.+||||||+.+.+..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45567899999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.19  E-value=0.00016  Score=47.90  Aligned_cols=26  Identities=19%  Similarity=0.129  Sum_probs=16.7

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      |++...|++.|.+||||||+.+.+..
T Consensus         2 ~~~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            2 PMRSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             ---CCEEEEECCC----CHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34556799999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.18  E-value=0.0002  Score=50.30  Aligned_cols=24  Identities=25%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|++|+|||||++.++|-..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            579999999999999999987643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.18  E-value=0.00026  Score=46.99  Aligned_cols=24  Identities=17%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...|++.|.+||||||+.+.++.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999874

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.18  E-value=0.00021  Score=48.21  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+|+++|++||||||+.+.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999976

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.18  E-value=0.0002  Score=50.66  Aligned_cols=23  Identities=35%  Similarity=0.287  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57999999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.18  E-value=0.00023  Score=48.51  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++|++.|++||||||+.+.++.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.17  E-value=0.00023  Score=48.06  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|+++|.+||||||+++.+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.16  E-value=0.00029  Score=47.71  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...|++.|.+||||||+++.+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            356799999999999999999865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.16  E-value=0.00021  Score=51.50  Aligned_cols=23  Identities=17%  Similarity=0.275  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .=.++++|++|+|||||++.+++
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhh
Confidence            34689999999999999999875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.16  E-value=0.00028  Score=47.60  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+...|+++|++|+||||+++.+.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            44567999999999999999988754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.15  E-value=0.00028  Score=47.75  Aligned_cols=22  Identities=32%  Similarity=0.158  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.|+++|++||||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.14  E-value=0.00027  Score=49.91  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.13  E-value=0.00032  Score=47.18  Aligned_cols=27  Identities=22%  Similarity=0.196  Sum_probs=23.0

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +++...|++.|.+||||||+.+.+...
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            456678999999999999999999764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.13  E-value=0.00029  Score=49.14  Aligned_cols=25  Identities=28%  Similarity=0.199  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+...|+++|++||||||+++.+++
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999876

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.13  E-value=0.00029  Score=47.91  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.|+++|+|||||+|...+++.
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.12  E-value=0.00028  Score=47.47  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++.|.+||||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.12  E-value=0.00028  Score=47.55  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.|+++|++||||||+.+.++.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.11  E-value=0.00015  Score=50.07  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=15.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhh-cC
Q 030233           18 IKLLMVGLDASGKTTILYKMK-LG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~-~~   40 (181)
                      --++++|++|+||||+++.++ +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            468999999999999999998 64

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.11  E-value=0.00027  Score=46.75  Aligned_cols=107  Identities=11%  Similarity=0.090  Sum_probs=47.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh----ccCCCEEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY----FRDTLGLTFVVD   93 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~----~~~~d~ii~v~d   93 (181)
                      ..++++|++|+|||||++++++.-. .    .+.....+......+. +|.+|.+.++.....+    ........++.+
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~-~----~g~~v~~i~~~~~~~~-id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~   80 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC-A----RGIRPGLIKHTHHDMD-VDKPGKDSYELRKAGAAQTIVASQQRWALMTE   80 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH-H----TTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc-c----cCCceeEEeeCCCccc-cCCCCCceEEEEeCCcceeecccchhheeeee
Confidence            4589999999999999999986421 1    1222233444333332 3556644332211111    011122222333


Q ss_pred             C--CCcccHHHHHHHHHHH------HcCCCCCCCeEEEEEeCCCC
Q 030233           94 S--SDRERISEARNELHQI------LSDNELSNAALLVFANKQDL  130 (181)
Q Consensus        94 ~--~~~~s~~~~~~~~~~~------~~~~~~~~~piilv~nK~D~  130 (181)
                      .  ..+..+..+...+...      ++.......|.+++++|.+.
T Consensus        81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~  125 (174)
T 1np6_A           81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAG  125 (174)
T ss_dssp             CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSS
T ss_pred             ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccC
Confidence            1  1224455544332211      11222346899999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.11  E-value=0.00032  Score=46.57  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|+++|++||||||+.+.++.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.10  E-value=0.00034  Score=46.63  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|++.|.+||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.10  E-value=0.00024  Score=48.75  Aligned_cols=22  Identities=23%  Similarity=0.153  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -++++|++|+|||||++.+++.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999999873

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.10  E-value=0.00034  Score=50.13  Aligned_cols=26  Identities=19%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.+...|+++|++|||||||++.+.+
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.10  E-value=0.00038  Score=48.56  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+.++|++.|++||||||+.+.++.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999964

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.09  E-value=0.00042  Score=45.65  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=24.4

Q ss_pred             HhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         8 ~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +.+.......-.+++.|++|+|||+++..++..
T Consensus        34 l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           34 AIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             HHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence            333333344567899999999999999988754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.09  E-value=0.00027  Score=52.14  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      -++++|++|||||||++.++|-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            479999999999999999998543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.08  E-value=0.00038  Score=47.16  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...|+++|++|+||||+++.+.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.014  Score=44.29  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +--|++.|+||+|||+|++.+++.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            345899999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.06  E-value=0.00039  Score=47.57  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+.|++.|.+||||||+.+.++.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.05  E-value=0.00038  Score=46.35  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++.|.+||||||+++.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.04  E-value=0.00037  Score=47.50  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.04  E-value=0.00033  Score=51.60  Aligned_cols=23  Identities=39%  Similarity=0.348  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|||||||++.++|-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.04  E-value=0.00036  Score=50.03  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|++|+|||||++.++|-..
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            579999999999999999987643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.04  E-value=0.00049  Score=46.36  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=21.6

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.+...|++.|.+||||||+.+.++.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            33445799999999999999998864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.02  E-value=0.00035  Score=51.59  Aligned_cols=23  Identities=26%  Similarity=0.218  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|||||||++.++|-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47999999999999999998854

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.02  E-value=0.00033  Score=49.78  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++++|++|+|||||++.+++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999874

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.02  E-value=0.00036  Score=51.57  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|||||||++.++|-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47999999999999999998854

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.02  E-value=0.00015  Score=47.91  Aligned_cols=52  Identities=27%  Similarity=0.286  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   75 (181)
                      .++++|++|||||||++.+++--.+.     +.....+...+..+.-+|.++...++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~~-----g~~~G~I~~dg~~i~~~~~~~~d~~r   55 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRER-----GLRVAVVKRHAHGDFEIDKEGKDSWK   55 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHT-----TCCEEEEEC------------CHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhc-----CCceEEEEEcCcccccCCccchhHHH
Confidence            58999999999999999997643221     22233344444443334444544444

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.01  E-value=0.00036  Score=51.82  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -++++|++|||||||++.++|-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47999999999999999998854

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.01  E-value=0.00054  Score=48.01  Aligned_cols=24  Identities=17%  Similarity=0.180  Sum_probs=21.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      +....|+++|++||||||+++.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999998

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.01  E-value=0.00037  Score=51.49  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -++++|++|+|||||++.+++-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47999999999999999998754

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.01  E-value=0.00044  Score=49.98  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+...|+++|++|||||||++.+.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999999876

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.00  E-value=0.00052  Score=46.21  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...|++.|.+||||||+++.+...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.00  E-value=0.0005  Score=45.96  Aligned_cols=24  Identities=29%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...|++.|.+||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.00  E-value=0.0077  Score=40.83  Aligned_cols=68  Identities=6%  Similarity=-0.110  Sum_probs=46.9

Q ss_pred             CCeEEEEEEcCCC-hhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           59 KNKSFCVWDVGGQ-NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        59 ~~~~~~i~d~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      ....+.++|+|+. ...  .....+..+|.+|++...+ ..++......+..+....   +.++.+++|+.|...
T Consensus        66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred             hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence            4567899999986 332  2334566799999999876 556666666665554421   456889999998654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.00  E-value=0.00049  Score=46.72  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...|++.|.+||||||+++.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.99  E-value=0.00024  Score=51.34  Aligned_cols=23  Identities=35%  Similarity=0.332  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            68999999999999999998754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.99  E-value=0.00045  Score=47.51  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|++.|.+||||||+.+.++.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.99  E-value=0.00029  Score=45.34  Aligned_cols=25  Identities=16%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .-.++++|++|+|||+|++.+++..
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999998643

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.99  E-value=0.00029  Score=52.14  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .-+++++|++|+|||||++.+++-.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.99  E-value=0.00048  Score=47.72  Aligned_cols=26  Identities=12%  Similarity=0.178  Sum_probs=21.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .++++.|++.|++|+||||+.+.+..
T Consensus         6 ~~~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            6 VSGSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             ---CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.99  E-value=0.00052  Score=49.11  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ....|++.|++||||||+++.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999964

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.98  E-value=0.0004  Score=51.49  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|||||||++.++|-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47999999999999999998854

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.98  E-value=0.00039  Score=51.57  Aligned_cols=24  Identities=29%  Similarity=0.300  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|++|||||||++.++|-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            479999999999999999988653

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.97  E-value=0.00053  Score=44.68  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.97  E-value=0.00048  Score=45.54  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...|++.|.+|+||||+.+.+..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345689999999999999999874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.96  E-value=0.0004  Score=51.26  Aligned_cols=22  Identities=36%  Similarity=0.321  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .++++|++||||||+++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.96  E-value=0.0004  Score=50.15  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-.++++|++||||||+++.+++
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34789999999999999999975

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.95  E-value=0.00054  Score=46.41  Aligned_cols=24  Identities=29%  Similarity=0.223  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...|++.|.+||||||+.+.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            356799999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.93  E-value=0.0005  Score=47.01  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+.|++.|.+||||||+.+.++.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.92  E-value=0.00049  Score=50.28  Aligned_cols=24  Identities=25%  Similarity=0.211  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -.++++|++|+|||||++.+++--
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.92  E-value=0.00046  Score=48.26  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++++|++|+|||||++.+++.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.91  E-value=0.00052  Score=45.18  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +|+++|++||||||+.+.++.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.91  E-value=0.00067  Score=46.87  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+...|++.|.+||||||+.+.++.
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.90  E-value=0.00062  Score=46.76  Aligned_cols=22  Identities=32%  Similarity=0.366  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.|++.|.+||||||+++.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.90  E-value=0.00074  Score=44.90  Aligned_cols=23  Identities=22%  Similarity=0.161  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|++.|.+||||||+.+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.90  E-value=0.0005  Score=49.59  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.++++|++|+||||+++.+++
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.90  E-value=0.00054  Score=46.93  Aligned_cols=23  Identities=35%  Similarity=0.406  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|++.|++||||||+.+.++.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.89  E-value=0.00071  Score=48.24  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      .+.+.|++.|.+||||||+.+.+.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            446789999999999999999986

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.89  E-value=0.00087  Score=46.08  Aligned_cols=25  Identities=16%  Similarity=0.118  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..-.+++.|++|+|||+++..++..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567999999999999999988753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.88  E-value=0.00052  Score=50.76  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -.++++|++|+|||||++.+++--
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            478999999999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.87  E-value=0.00053  Score=51.16  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .++++|++|||||||++.+++-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5799999999999999999874

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.87  E-value=0.00033  Score=51.52  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|||||||++.++|-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47999999999999999998854

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.87  E-value=0.00073  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++.|++.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.86  E-value=0.00055  Score=48.02  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|+++|++|||||||...++.
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.86  E-value=0.00076  Score=46.56  Aligned_cols=26  Identities=31%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+..-|++.|+.|+||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34567999999999999999999865

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.85  E-value=0.00079  Score=45.61  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+++.|+||+|||+++.++++
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999888865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.85  E-value=0.00074  Score=44.98  Aligned_cols=21  Identities=38%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.016  Score=43.40  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +--+++.|+||+|||+|+..+++.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            345899999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.84  E-value=0.00077  Score=44.50  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...|++.|.+||||||+.+.+.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999875

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.02  Score=43.16  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +--|++.|+||+|||+|+..+++.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            345999999999999999999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.83  E-value=0.00079  Score=49.11  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.--++++|++|+||||+++.+++
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999976

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.83  E-value=0.00061  Score=50.58  Aligned_cols=24  Identities=29%  Similarity=0.213  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .-.++++|++||||||+++.+++-
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            346899999999999999999863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.82  E-value=0.00068  Score=44.54  Aligned_cols=22  Identities=36%  Similarity=0.360  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..++++|.+|+|||||+.+++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999975

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.82  E-value=0.00078  Score=45.10  Aligned_cols=23  Identities=26%  Similarity=0.216  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|++.|.+||||||+.+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.81  E-value=0.00081  Score=47.05  Aligned_cols=25  Identities=24%  Similarity=0.194  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+.+.|++.|++||||||+.+.+..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998865

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.81  E-value=0.0008  Score=49.75  Aligned_cols=23  Identities=39%  Similarity=0.628  Sum_probs=20.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKM   37 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~   37 (181)
                      .+..||+++|.+|||||||+.++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            35689999999999999999887

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.80  E-value=0.00053  Score=48.07  Aligned_cols=24  Identities=33%  Similarity=0.344  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ....|+++|++||||||+.+.+..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.017  Score=43.60  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -+++.|+||+|||+++..+++.
T Consensus       208 GiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.79  E-value=0.0046  Score=39.24  Aligned_cols=24  Identities=13%  Similarity=0.088  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...|++.|++|+|||++++.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            456999999999999999988654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.78  E-value=0.00065  Score=49.64  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -.++++|++|+|||||++.+++.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            34899999999999999999864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.77  E-value=0.00072  Score=48.01  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++++|++|+|||||++.+++.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.76  E-value=0.00072  Score=46.33  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -++++|++|+|||||+..+++
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999999984

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.76  E-value=0.00032  Score=51.69  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|++|||||||++.++|-..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            479999999999999999988643

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.75  E-value=0.00072  Score=50.95  Aligned_cols=23  Identities=35%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      =.++++|++||||||+++.+++.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999999763

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.72  E-value=0.00081  Score=52.02  Aligned_cols=24  Identities=38%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -.++++|++||||||+++.+++--
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999998743

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.72  E-value=0.00096  Score=43.62  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++.|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.72  E-value=0.00098  Score=45.66  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             ccE-EEEEcCCCCChHHHHHhhhc
Q 030233           17 RIK-LLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~-i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.+ |+++|+|||||+|...+++.
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            344 67799999999999998875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.71  E-value=0.0011  Score=46.68  Aligned_cols=22  Identities=23%  Similarity=0.454  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..|++.|.+||||||+.+.+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.71  E-value=0.0016  Score=46.22  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..-.+++.|++|+|||++++.++..
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3456999999999999999999764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.70  E-value=0.00085  Score=49.52  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.++++|++|+||||+++.+++
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHh
Confidence            4689999999999999999976

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.70  E-value=0.00096  Score=44.18  Aligned_cols=21  Identities=43%  Similarity=0.591  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++.|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.70  E-value=0.0012  Score=44.69  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+++.|++|+|||+++..++..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.69  E-value=0.00091  Score=46.84  Aligned_cols=23  Identities=30%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -.+++.|++|+|||++++.+++.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999999763

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.69  E-value=0.0017  Score=45.85  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=22.6

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ......+++.|++|+|||+++..++..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            344567999999999999999999764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.68  E-value=0.0012  Score=43.05  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++.|.+||||||+.+.+..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.0039  Score=42.86  Aligned_cols=29  Identities=24%  Similarity=0.165  Sum_probs=24.6

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .|+.++-|++-|+++.|||.|++++.+.+
T Consensus        25 ~P~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           25 YPQNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             cCCCceEEEecCcccccHHHHHHHHhccc
Confidence            46777777777999999999999999875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.67  E-value=0.00031  Score=47.71  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++.|.+||||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.66  E-value=0.00091  Score=51.32  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-.++++|++|+||||+++.+++
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34689999999999999999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.00079  Score=51.39  Aligned_cols=26  Identities=19%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      ..-.++++|++|+|||||++.+++-.
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            34568999999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.65  E-value=0.0015  Score=47.91  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+++.|++|+||||+++.+++
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999999877

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.64  E-value=0.0015  Score=45.17  Aligned_cols=25  Identities=24%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +...|++.|++||||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.63  E-value=0.00094  Score=47.82  Aligned_cols=22  Identities=18%  Similarity=0.289  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -++++|++|+|||||+..+++.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4799999999999999998764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.63  E-value=0.0023  Score=43.01  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..+++.|++|+|||+|+..++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.60  E-value=0.0023  Score=47.00  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.+..+|+++|++|+||||+...+++
T Consensus        21 ~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           21 DNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            34456899999999999999987765

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.60  E-value=0.0011  Score=45.01  Aligned_cols=21  Identities=38%  Similarity=0.347  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -++++|++|+|||||+..+++
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999986

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.59  E-value=0.0015  Score=44.37  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=21.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .....|++.|.+|+||||+++.+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999998865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.00079  Score=48.84  Aligned_cols=28  Identities=11%  Similarity=0.064  Sum_probs=23.5

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .......+++.|+||+|||++++.++..
T Consensus        41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           41 MSSQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             HTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3456678999999999999999998753

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.57  E-value=0.0013  Score=43.42  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.+++|++|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999854

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.026  Score=43.01  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +--|++.|+||+|||+|++.+++.
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhc
Confidence            446899999999999999999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.56  E-value=0.0013  Score=48.41  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      +--+++++|++|+|||||++.+++..
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34578999999999999999998864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.56  E-value=0.0012  Score=45.51  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      --++++|++|+|||||+..+++.
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            35799999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.55  E-value=0.0012  Score=46.31  Aligned_cols=23  Identities=35%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-.|+++|++|+||||+.+.+++
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.54  E-value=0.0025  Score=40.60  Aligned_cols=27  Identities=15%  Similarity=0.143  Sum_probs=22.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .....|++.|++|+|||+++..+....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            345679999999999999999997654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.54  E-value=0.0016  Score=43.68  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+.|++.|.+||||||+.+.+...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999998753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.51  E-value=0.0018  Score=46.41  Aligned_cols=24  Identities=17%  Similarity=-0.017  Sum_probs=20.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +.-+++.|+||+|||+++..++..
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            345778899999999999999754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.50  E-value=0.0018  Score=44.81  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+...|+++|.+|+||||+.+.+..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999998875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.49  E-value=0.0016  Score=50.75  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.++|-.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998854

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.49  E-value=0.001  Score=47.69  Aligned_cols=24  Identities=13%  Similarity=0.170  Sum_probs=17.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.+.|++.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.49  E-value=0.0014  Score=50.27  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.++++|++|+|||||++.+++
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            4579999999999999999976

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0027  Score=48.05  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +--|++.|+||+|||+|+..+++.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            446999999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.47  E-value=0.0012  Score=47.99  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -++++|..|+|||||++.+.+.
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4789999999999999999965

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.47  E-value=0.0027  Score=46.39  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..+++.|++|+|||++++.+++.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999998764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.46  E-value=0.0015  Score=46.72  Aligned_cols=24  Identities=25%  Similarity=0.301  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .-.+++.|++|+|||++++.+++.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457899999999999999999764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.46  E-value=0.0029  Score=45.44  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .-.+++.|++|+|||++++.+++.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.45  E-value=0.0017  Score=51.15  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999998754

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.44  E-value=0.0016  Score=49.39  Aligned_cols=26  Identities=15%  Similarity=0.070  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      +-=+++++|++|+|||||++.+++..
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34578999999999999999998764

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.44  E-value=0.023  Score=41.23  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...+++.|++|+|||++++.++..
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346899999999999999999654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.44  E-value=0.0015  Score=48.50  Aligned_cols=23  Identities=30%  Similarity=0.226  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-.++++|++|+|||||++.+++
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999999985

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.43  E-value=0.002  Score=47.05  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+++.|++|+||||+++.+++.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.42  E-value=0.002  Score=46.11  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..|++.|.+||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999975

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.42  E-value=0.0022  Score=43.18  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++.|.+||||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.41  E-value=0.0017  Score=45.36  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-.+++.|++|+|||++++.++.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999975

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.41  E-value=0.0023  Score=44.20  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .++++++|++||||||+..+++.
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            57899999999999999998864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.38  E-value=0.0023  Score=45.95  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ....+++.|++|+|||++++.++.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999987754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.0024  Score=50.44  Aligned_cols=25  Identities=28%  Similarity=0.238  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      =.++++|++|+|||||++.++|-..
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCC
Confidence            3689999999999999999988543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.35  E-value=0.0022  Score=47.44  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+++.|++|+|||++++.+++.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.35  E-value=0.002  Score=44.09  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+++.|++|+|||+++..++.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.34  E-value=0.0027  Score=49.97  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.33  E-value=0.0019  Score=45.86  Aligned_cols=21  Identities=14%  Similarity=0.219  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -++++|++|+|||||+..+++
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            579999999999999999875

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.33  E-value=0.0021  Score=45.24  Aligned_cols=26  Identities=27%  Similarity=0.184  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+...|++.|..||||||+++.+...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34568999999999999999988754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.32  E-value=0.0025  Score=40.91  Aligned_cols=19  Identities=32%  Similarity=0.585  Sum_probs=17.2

Q ss_pred             EEEEcCCCCChHHHHHhhh
Q 030233           20 LLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~   38 (181)
                      .+++|+.|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5899999999999999875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.32  E-value=0.0017  Score=51.06  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999999998754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.32  E-value=0.0031  Score=48.27  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=21.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...-+++++|++|+|||++++.++..
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence            34457899999999999999988754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.31  E-value=0.0022  Score=43.63  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.+.|++.|.+||||||+.+.+..
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.30  E-value=0.0022  Score=49.97  Aligned_cols=24  Identities=21%  Similarity=0.128  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|++|+|||||++.+++-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            479999999999999999998543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.29  E-value=0.0029  Score=45.75  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..-|+++|++|||||+|...++..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            446899999999999999999754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.29  E-value=0.002  Score=50.90  Aligned_cols=24  Identities=38%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|+|||||++.+++-.
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            368999999999999999998754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.29  E-value=0.0023  Score=47.19  Aligned_cols=24  Identities=42%  Similarity=0.562  Sum_probs=21.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      .+..|++++|.++|||||++.++.
T Consensus         7 ~~~~k~lllG~~~sGKsT~~kq~~   30 (354)
T 2xtz_A            7 IHIRKLLLLGAGESGKSTIFKQIK   30 (354)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceeEEEECCCCCcHHHHHHHHH
Confidence            356899999999999999998874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.28  E-value=0.0031  Score=45.80  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..|+++|++||||||+...++..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.28  E-value=0.0047  Score=44.60  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=21.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .-.+++.|++|+|||+|+..++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999988753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.27  E-value=0.0032  Score=49.04  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      +.=-++++|++|+|||||++.++|-.
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            33468999999999999999998854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.26  E-value=0.0032  Score=49.76  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|+|||||++.++|-.
T Consensus       118 e~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          118 MVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            358999999999999999998854

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.26  E-value=0.0022  Score=46.51  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -.+++.|++|+|||+|++.+++.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.23  E-value=0.0022  Score=50.46  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|+|||||++.+++-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.22  E-value=0.0031  Score=42.49  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      ..-|+++|++|+|||+|...++..-
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999999999997653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.22  E-value=0.0036  Score=46.23  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .-.+++.|++|+|||++++.++..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            447999999999999999998753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.21  E-value=0.0039  Score=46.99  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...-|+++|.+||||||+.++++..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4456899999999999999998753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.20  E-value=0.0024  Score=45.85  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-.++++|++|+||||++..+++
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44789999999999999988864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.20  E-value=0.0032  Score=41.73  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++|+|.++||||+|..+++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999854

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.20  E-value=0.0085  Score=45.50  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=19.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      ..-.-|.|+|+.++|||+|+|.++
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            344568899999999999999554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.18  E-value=0.0039  Score=48.60  Aligned_cols=24  Identities=29%  Similarity=0.245  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|+.|+|||||++.++|-..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            579999999999999999998653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.15  E-value=0.0028  Score=45.71  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.++++|++|+||||++..+++
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHH
Confidence            3589999999999999998875

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.15  E-value=0.0028  Score=46.08  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -.+++.|++|+|||++++.++..
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.14  E-value=0.0031  Score=43.60  Aligned_cols=21  Identities=24%  Similarity=0.297  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -++++|++|+|||||+..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999887754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.14  E-value=0.0032  Score=43.43  Aligned_cols=24  Identities=29%  Similarity=0.203  Sum_probs=18.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +..-|.+.|++|+||||+++.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.13  E-value=0.0022  Score=47.35  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..-.+++.|++|+|||++++.++..
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.13  E-value=0.0029  Score=45.27  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...+++.|++|+|||++++.++.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.11  E-value=0.0043  Score=49.02  Aligned_cols=25  Identities=28%  Similarity=0.211  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      .++++|++|+|||||++.++|-..+
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~p  408 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEEP  408 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            5799999999999999999986533

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.11  E-value=0.0023  Score=47.20  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .-.+++.|++|+|||||++.+++.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            446899999999999999998763

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=96.11  E-value=0.0036  Score=46.88  Aligned_cols=23  Identities=39%  Similarity=0.666  Sum_probs=20.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKM   37 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~   37 (181)
                      .+.+|++++|...|||||++.++
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQm   60 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQM   60 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHH
T ss_pred             hccceEEEecCCCCchhhHHHHH
Confidence            35799999999999999999877

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.11  E-value=0.0032  Score=46.59  Aligned_cols=19  Identities=16%  Similarity=0.447  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChHHHHHhhh
Q 030233           20 LLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~   38 (181)
                      .+++|+.|+|||||++.++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999999986

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.11  E-value=0.027  Score=40.51  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..+++.|++|+|||++++.+..
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.09  E-value=0.0034  Score=45.06  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+++.|++|+|||++++.+.+.
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            6999999999999999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.08  E-value=0.0033  Score=49.67  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             EEEEcCCCCChHHHHHhhhcCCcc
Q 030233           20 LLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      ++++|++|+|||||++.++|-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            799999999999999999986543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.04  E-value=0.0037  Score=45.73  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..|+++|++|||||||...++.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.03  E-value=0.0032  Score=46.29  Aligned_cols=23  Identities=22%  Similarity=0.119  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -+.++|++|+|||||+..+++..
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57999999999999999998753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.03  E-value=0.0037  Score=45.32  Aligned_cols=24  Identities=17%  Similarity=0.260  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...+++.|++|+|||+++..++..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999999754

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.99  E-value=0.0056  Score=45.03  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.+++.|++|+|||+++..++.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.97  E-value=0.005  Score=42.64  Aligned_cols=24  Identities=25%  Similarity=0.213  Sum_probs=20.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...|++.|..||||||+++.+...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999998753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.94  E-value=0.0075  Score=45.89  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..+++.|++|+|||++++.+.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            47999999999999999999764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.90  E-value=0.007  Score=43.42  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+++.|++|+|||+++..++..
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~   61 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARD   61 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHH
Confidence            4999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-41
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-38
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-33
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-33
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-33
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-33
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-31
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-30
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	6e-29
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-25
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	6e-25
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-23
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	6e-23
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-22
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-22
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-21
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-20
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-17
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-17
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-17
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-17
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-17
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-16
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	7e-16
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-15
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	7e-15
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-14
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-13
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	7e-13
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	9e-13
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-12
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	9e-12
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	9e-12
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-10
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-10
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-10
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-09
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-08
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-08
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-08
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-08
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	3e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	6e-08
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-08
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-07
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-07
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-06
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-06
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-05
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-05
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	6e-05
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	7e-05
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	9e-05
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	3e-04
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-04
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	8e-04

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  133 bits (335), Expect = 9e-41
 Identities = 101/176 (57%), Positives = 131/176 (74%), Gaps = 4/176 (2%)

Query: 2   GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
           GK++S++    F    +++LM+GLDA+GKTTILYK+KLG+ VTT PT+GFNVE V YKN 
Sbjct: 1   GKVLSKI----FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 56

Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
            F VWDVGGQ+KIR LWRHY+  T GL FVVD +DR+RI EAR ELH+I++D E+ +A +
Sbjct: 57  KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116

Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           L+FANKQDLP+ M   E+ +KL L  +  R W +Q   A SG GLYEGL WL++N 
Sbjct: 117 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  128 bits (322), Expect = 1e-38
 Identities = 90/177 (50%), Positives = 125/177 (70%), Gaps = 1/177 (0%)

Query: 2   GKLISRLAKRFFPQCR-IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKN 60
           G + S +  + +   + +++L++GLD +GKTTILY++++GE+VTT PTIGFNVE + YKN
Sbjct: 1   GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKN 60

Query: 61  KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA 120
               VWD+GGQ  IR  WR Y+ DT  + FVVDS+D++R+S A  ELH +L + EL +AA
Sbjct: 61  LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 120

Query: 121 LLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           LLVFANKQD P  +  +EV+ +L L  L  R WSI + SAI G+G+ EGLDWL + I
Sbjct: 121 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  114 bits (286), Expect = 1e-33
 Identities = 114/160 (71%), Positives = 135/160 (84%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++LMVGLDA+GKTTILYK+KLGEIVTT PTIGFNVE VEYKN SF VWDVGGQ+KIR L
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WRHYF++T GL FVVDS+DRER++EAR EL ++L+++EL +A LLVFANKQDLPN M  A
Sbjct: 61  WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120

Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           E+ DKL L+SL  R W IQ+  A SG GLYEGLDWLSN +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  114 bits (286), Expect = 2e-33
 Identities = 74/163 (45%), Positives = 112/163 (68%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           ++LLM+GLD +GKTTIL K    ++ T +PT+GFN++ +E++     +WDVGGQ  +R+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSY 62

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WR+YF  T GL +VVDS+DR+R+ + + EL  +L +  L+ A LL+FANKQDLP  +   
Sbjct: 63  WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 122

Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
            + + LEL S+    W IQ CSA++G+ L  G+DWL ++IS +
Sbjct: 123 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  114 bits (286), Expect = 2e-33
 Identities = 79/176 (44%), Positives = 119/176 (67%), Gaps = 1/176 (0%)

Query: 2   GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNK 61
           G L +R+  R F     K+++VGLD +GKTTILY+  + E+V T+PTIG NVE +   N 
Sbjct: 1   GILFTRI-WRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 59

Query: 62  SFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL 121
            F +WD+GGQ  +R+ W  Y+ +T  +  VVDS+DRERIS  R EL+++L+  +L  A L
Sbjct: 60  RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 119

Query: 122 LVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           L+FANKQD+   M  AE++  L+L S+   +W IQ+C A++G+GL +GL+W+ + +
Sbjct: 120 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  114 bits (285), Expect = 4e-33
 Identities = 75/175 (42%), Positives = 119/175 (68%), Gaps = 1/175 (0%)

Query: 4   LISRLAK-RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKS 62
           L+S L K +  P   +++L++GLD +GKTT+L ++   +I   TPT GFN+++V+ +   
Sbjct: 2   LLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61

Query: 63  FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
             VWD+GGQ KIR  WR YF +T  L +V+DS+DR+R  E   EL ++L + +LS   +L
Sbjct: 62  LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL 121

Query: 123 VFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           +FANKQDL    P +E+A+ L L+++  R W IQSCSA++G+G+ +G++W+  N+
Sbjct: 122 IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (274), Expect = 1e-31
 Identities = 59/163 (36%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           KLL +GLD +GKTT+L+ +K   + T  PT     E +   N  F  +D+GG  + R LW
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 61

Query: 79  RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE 138
           + YF +  G+ F+VD++D ER  EAR EL  + +  EL +   ++  NK D PN +  AE
Sbjct: 62  KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 121

Query: 139 VADKLELYSL-------GQRRWSIQSCSAISGQGLYEGLDWLS 174
           +   L L +        GQR   +  CS +   G  E   WLS
Sbjct: 122 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score =  107 bits (267), Expect = 2e-30
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 12/184 (6%)

Query: 6   SRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCV 65
           S L      +   KL+ +GLD +GKTT+L+ +K   +    PT+    E +     +F  
Sbjct: 2   SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT 61

Query: 66  WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA 125
           +D+GG  + R +W++Y     G+ F+VD +D ER+ E++ EL  +++D  ++N  +L+  
Sbjct: 62  FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121

Query: 126 NKQDLPNVMPTAEVADKLELY------------SLGQRRWSIQSCSAISGQGLYEGLDWL 173
           NK D P  +    + +   LY             L  R   +  CS +  QG  EG  W+
Sbjct: 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181

Query: 174 SNNI 177
           +  I
Sbjct: 182 AQYI 185

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  104 bits (261), Expect = 6e-29
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALW 78
           +LL++G   SGK+TI+ +M++  +V    T G      +    +F ++DVGGQ   R  W
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHVV---LTSGIFETKFQVDKVNFHMFDVGGQRDERRKW 64

Query: 79  RHYFRDTLGLTFVVDSS----------DRERISEARNELHQILSDNELSNAALLVFANKQ 128
              F D   + FVV SS             R+ EA N    I ++  L   ++++F NKQ
Sbjct: 65  IQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 124

Query: 129 DLP 131
           DL 
Sbjct: 125 DLL 127

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 94.4 bits (233), Expect = 2e-25
 Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 1/161 (0%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRA 76
           ++L +VGL  SGKTT +  +  G+      PT+GFN+  +   N +  +WD+GGQ + R+
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS 62

Query: 77  LWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT 136
           +W  Y R    + ++VD++D+E+I  ++NELH +L   +L    +LV  NK+DLP  +  
Sbjct: 63  MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE 122

Query: 137 AEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
            E+ +K+ L ++  R     S S      +   L WL  + 
Sbjct: 123 KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.8 bits (232), Expect = 6e-25
 Identities = 37/197 (18%), Positives = 76/197 (38%), Gaps = 34/197 (17%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +KLL++G   SGK+T + +M++    +  PT G      + ++  F + DVGGQ   R  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIH-GSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRK 61

Query: 78  WRHYFRDTLGLTFVVDSSDRER----------ISEARNELHQILSDNELSNAALLVFAN- 126
           W H F +   + F+V  S+ ++          + E++     I++     N+++++F N 
Sbjct: 62  WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 121

Query: 127 KQDLPNVMPTAEVADK----------------------LELYSLGQRRWSIQSCSAISGQ 164
           K  L   +  + + D                       ++L     +        A   +
Sbjct: 122 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE 181

Query: 165 GLYEGLDWLSNNISVKN 181
            +      + + I   N
Sbjct: 182 NIRFVFAAVKDTILQLN 198

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.0 bits (222), Expect = 2e-23
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 13/136 (9%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +K+L++G   SGK+T L +M++       PT G +    E KN  F + DVGGQ   R  
Sbjct: 3   VKILLLGAGESGKSTFLKQMRIIH--GQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKR 60

Query: 78  WRHYFRDTLGLTFVVDSSDRE----------RISEARNELHQILSDNELSNAALLVFANK 127
           W   F     + F+V SS+ +          R++E+ N    I+++   SN ++++F NK
Sbjct: 61  WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNK 120

Query: 128 Q-DLPNVMPTAEVADK 142
              L   +    + D 
Sbjct: 121 TDLLEEKVQVVSIKDY 136

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 88.2 bits (217), Expect = 5e-23
 Identities = 79/163 (48%), Positives = 113/163 (69%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +++L++GLD +GKTTILY++++GE+VTT PTIGFNVE V YKN  F VWD+GG   IR  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 65

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
           WR Y+ +T  + +VVDS DR+RI  +++EL  +L + EL  A L+VFANKQD+   M ++
Sbjct: 66  WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS 125

Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
           E+A+ L L +L  R+W I   SA  G GL E ++WL   +  +
Sbjct: 126 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.5 bits (218), Expect = 6e-23
 Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 17/178 (9%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL- 77
            +L VGL  SGKT +  ++  G+   T  +I  +    +  N       +       +L 
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 78  ---WRHYFRDTLGLTFVVDSSDRER-ISEARNELHQILSDNELSNAA--LLVFANKQDLP 131
                 +      + FVVDS+  +R + +    L+Q+L D+     +  LL+  NKQD+ 
Sbjct: 62  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121

Query: 132 NVMPTAEVADKLELYSLGQRRWSIQSCSAISG----------QGLYEGLDWLSNNISV 179
                  +  +LE      R     + S +            +G       L   +  
Sbjct: 122 MAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEF 179

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (215), Expect = 1e-22
 Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 9/168 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            KLL++G    GKT +L++       +T   T  I F +  +E   K     +WD  GQ 
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R +   Y+R  +G+  V D ++ +     RN +  I          +++         
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
              + E  +                 SA +   +      L+ +I  K
Sbjct: 127 RQVSKERGE----KLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.0 bits (212), Expect = 2e-22
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 10/165 (6%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEI---VTTTPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
           +K+L++G    GK+ +L +    +      TT  I F ++ V+   K     +WD  GQ 
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R +   Y+R  +G+  V D +D    +  +     +        A LL+  NK D+  
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMET 121

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
            + TA+  +        +        SA +   + E    L+  I
Sbjct: 122 RVVTADQGEA----LAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 2e-21
 Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN 72
           +K+L++G    GK+++L +            TIG + +     V+       +WD  GQ 
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R L   Y+R   G+  V D + R+   +  N L+++ +    ++   ++  NK D   
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID--- 124

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
                EV     L    +        SA +  G+    + L   I
Sbjct: 125 -KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 82.7 bits (203), Expect = 1e-20
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 37/197 (18%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           +KLL++G   SGK+TI+ +MK+          G       +K+  F ++DVGGQ   R  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSERKK 58

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEAR----------NELHQILSDNELSNAALLVFAN- 126
           W H F     + F V  SD + +                   I ++   ++ ++++F N 
Sbjct: 59  WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNK 118

Query: 127 KQDLPNVMPTAEVADKLELY----------------------SLGQRRWSIQSCSAISGQ 164
           K      +  + +      Y                          +        A   +
Sbjct: 119 KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK 178

Query: 165 GLYEGLDWLSNNISVKN 181
            +    D +++ I   N
Sbjct: 179 NVQFVFDAVTDVIIKNN 195

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (181), Expect = 1e-17
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 10/165 (6%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPT--IGFNVEA----VEYKNKSFCVWDVGGQN 72
           K+++VG    GKT +L + K G  +  T    +G +       V+       +WD  GQ 
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R++   Y+RD   L  + D +++      +  L +I    +   A +L+         
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
            +   E  +KL      +        SA +G  +      ++  +
Sbjct: 128 RVVKREDGEKLAK----EYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 1e-17
 Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 9/164 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPT-----IGFNVEAVEYKNKSFCVWDVGGQNK 73
           K L++G   +GK+ +L++    +    +        G  +  V  K     +WD  GQ +
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            R++ R Y+R   G   V D + RE  +   N L         +   +L    K    + 
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
             T   A +       +        SA++G+ + E     +  I
Sbjct: 127 EVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCARKI 166

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 2e-17
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 18/175 (10%)

Query: 18  IKLLMVGLDASGKTTILYKMKLG---EIVTTTPTIGFNVEAVEYKNK------------S 62
           IKLL +G    GKTT LY+           TT  I F  + V Y  +             
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 63  FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL 122
             +WD  GQ + R+L   +FRD +G   + D + ++     RN + Q+ ++    N  ++
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 123 VFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           +  NK DLP+     E   +      G         SA +GQ + + ++ L + I
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYG---IPYFETSAATGQNVEKAVETLLDLI 177

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.0 bits (178), Expect = 3e-17
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA-----VEYKNKSFCVWDVGGQNK 73
           K+L++G  + GKT+ L++           +               K     +WD  GQ +
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            R +   Y+R  +G   + D ++ E  +  ++   QI + +   NA +L+  NK D+ + 
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGNKCDMEDE 125

Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
              +    +     LG   +     SA     + +  + L + I
Sbjct: 126 RVVSSERGRQLADHLG---FEFFEASAKDNINVKQTFERLVDVI 166

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.5 bits (179), Expect = 3e-17
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 20  LLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWR 79
           +++ G   SGKT++L  +    +  T  +    + A +Y      + D  G  K+R    
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-PLSAADYDGSGVTLVDFPGHVKLRYKLS 64

Query: 80  HYFRDTLGL-----TFVVDSSDRERISEARNELHQILSDNELSNAA---LLVFANKQDLP 131
            Y +            V  + D ++++     L  ILS  E S      +L+  NK +L 
Sbjct: 65  DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 124

Query: 132 NVMPTAEVADKLE 144
              P +++ D LE
Sbjct: 125 TARPPSKIKDALE 137

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (175), Expect = 1e-16
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEA----VEYKNKSFCVWDVGGQN 72
            KLL++G    GK+ +L +            TIG + +     ++ K     +WD  GQ 
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R +   Y+R + G+  V D +D+E  +  +  L +I      +   LLV         
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
            +   +VA           +      SA+    + +    ++  I
Sbjct: 127 RVVEYDVAK----EFADANKMPFLETSALDSTNVEDAFLTMARQI 167

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 7e-16
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-----IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73
           K++++G    GK+ +L +    E       T           V+ K     +WD  GQ +
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            R +   Y+R  +G   V D +           L ++  D+  SN  +++  NK DL ++
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR-DHADSNIVIMLVGNKSDLRHL 124

Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
                           +   S    SA+    + E    +   I
Sbjct: 125 RAVPT---DEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 6/168 (3%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEY----KNKSFCVWDVGGQN 72
           IKL+++G  A GK++I+ +    +      PTIG                F +WD  GQ 
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           +  +L   Y+R+      V D +  +   +AR+ + ++  +    +  + +  NK D+  
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDMLQ 122

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK 180
                +VA +       ++       SA +G+ + +    +   I +K
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 7e-15
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 9/165 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEYKNK--SFCVWDVGGQN 72
            K++++G    GKT ++ +   G        T  + F ++ VE   +     +WD  GQ 
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + R++ + Y+R    L    D +  E        L +I          +LV         
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
              + + A++        +       SA     + +    L+  +
Sbjct: 126 REVSQQRAEEFS----EAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 5e-14
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPT-----IGFNVEAVEYKNKSFCVWDVGGQN 72
            K +++G    GK+ +L++    + +   P       G  +  V  +     +WD  GQ 
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + RA+ R Y+R   G   V D + R   +   + L    +    +   +L+  NK DL  
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI-GNKADLEA 123

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
                    K      G         SA +G+ + +     +  I
Sbjct: 124 QRDVTYEEAKQFAEENG---LLFLEASAKTGENVEDAFLEAAKKI 165

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 4e-13
 Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 9/164 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGE-----IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73
           K +++G    GK+ +L +           +T     G  +  ++ K     +WD  GQ  
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            R++ R Y+R   G   V D + RE  +   + L      +  SN  +++  NK DL + 
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESR 123

Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
                   +      G         SA +   + E     +  I
Sbjct: 124 RDVKREEGEAFAREHG---LIFMETSAKTACNVEEAFINTAKEI 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 7e-13
 Identities = 22/165 (13%), Positives = 54/165 (32%), Gaps = 7/165 (4%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNK 73
            K++++G    GK+ +  +   G  +        +       V+       + D  G  +
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
             ++   Y ++  G   V    +++   + +    QI+         +++  NK DL + 
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS 178
              +    +      G         SA S   + E    +   ++
Sbjct: 124 REVSSSEGRALAEEWG---CPFMETSAKSKTMVDELFAEIVRQMN 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 61.1 bits (147), Expect = 9e-13
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 7/163 (4%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVGGQNKI 74
           K++MVG    GK+ +  +    E V        +       ++ +     + D  GQ   
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 75  RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134
            A+  +YFR   G   V   ++ E  +   +   QIL   E  N   L+  NK DL +  
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125

Query: 135 PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
             +    K           +    SA +   + +    L   I
Sbjct: 126 QVSVEEAKNRADQWN---VNYVETSAKTRANVDKVFFDLMREI 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 5e-12
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 10/173 (5%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF-----NVEAVEYKNKSFCVWDV 68
             C+ KL+++G  A GK++++ +   G+      +            ++     F +WD 
Sbjct: 3   KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62

Query: 69  GGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQ 128
            GQ +  +L   Y+R       V D ++ E  + A+N + ++       N  + +  NK 
Sbjct: 63  AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKA 121

Query: 129 DLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN 181
           DL N         +                SA +   + E    ++  +  KN
Sbjct: 122 DLANKRAVDFQEAQSYADDNS---LLFMETSAKTSMNVNEIFMAIAKKLP-KN 170

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 9e-12
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 9/164 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-----KNKSFCVWDVGGQNK 73
           K++++G    GKT+++ +    +      T        +      K  +  +WD  GQ +
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
             AL   Y+RD+ G   V D +D +   + +N + ++           +V          
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
             + + A+                 SA   +G+ E    L   +
Sbjct: 125 HVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 9e-12
 Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 11/168 (6%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-----IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN 72
            K++++G    GK++++ +    +       T           V+    +  +WD  GQ 
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 73  KIRALWRHYFRDTLGLT---FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
           + R+L   ++R +        V DS   + +S  + E        E  +   ++  NK D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 130 LPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           +     + E A     +      +     SA     +    +     +
Sbjct: 127 ISERQVSTEEAQA---WCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 5/165 (3%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY----KNKSFCVWDVGGQN 72
           +K++++G    GKT+++ +    +       TIG +    E     +  +  +WD  GQ 
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           + ++L   ++R       V D +         +   + L      +     F    +  +
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           +        + + +   +        SA     + +    ++ N 
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-10
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 7/168 (4%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN----VEAVEYKNKSFCVWDVG 69
           P    KL++VG    GK+ +  +      V+       +    + +V+       + D  
Sbjct: 3   PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTA 62

Query: 70  GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
           GQ +  A+   Y R   G   V   +DR+  +E      QIL   +  +  +++  NK D
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 130 LPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           L +              S      +    SA     + E  + L   +
Sbjct: 123 LESQRQVPRSEASAFGASHH---VAYFEASAKLRLNVDEAFEQLVRAV 167

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-10
 Identities = 28/164 (17%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIV-----TTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73
           KL+ +G  + GKT+++ +            T           +E +     +WD  GQ +
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
            R+L   Y RD+     V D ++     +    +  + ++   S+  +++  NK DL + 
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADK 120

Query: 134 MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
              +    + +   L          SA +G  + +    ++  +
Sbjct: 121 RQVSIEEGERKAKELN---VMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (125), Expect = 1e-09
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 10/165 (6%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-----KNKSFCVWDVGGQN 72
           IK+++VG  A GK++++ +   G                       ++    +WD  GQ 
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           +  A+ + Y+R       V  ++DRE      +   +++++    +    +  NK DL +
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG--DIPTALVQNKIDLLD 120

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
                 + ++       + +      S      + E   +L+   
Sbjct: 121 DSC---IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 15/171 (8%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA---VEYKNKSFCVWDVGGQN 72
           R KL++VG  A GKT +L      +      PT+  N  A   V+ K     +WD  G  
Sbjct: 2   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE 61

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
               L    + DT  +         + +     +    +      N  +++  NK+DL N
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRN 120

Query: 133 VMPTAEVADKL--------ELYSLGQRRWSIQ--SCSAISGQGLYEGLDWL 173
              T     K+        E   +  R  +     CSA +  G+ E  +  
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 15/170 (8%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIGFNVEAVEY---KNKSFCVWDVGGQNK 73
           IK ++VG  A GKT +L      +      PT+  N         +  +  ++D  GQ  
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
              L    +  T                  + +    ++ +       L+   + DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDD 122

Query: 134 MPTAEVADKL----------ELYSLGQRRWSIQSCSAISGQGLYEGLDWL 173
             T E   K           E  +   +      CSA++ +GL    D  
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 12/168 (7%)

Query: 15  QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEYK----NKSFCVWDVG 69
           Q + KL++VG   +GKTT + +   GE       T+G  V  + +        F VWD  
Sbjct: 1   QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTA 60

Query: 70  GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
           GQ K   L   Y+        + D + R       N    ++   E  N  +++  NK D
Sbjct: 61  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLCGNKVD 118

Query: 130 LPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
           + +    A+           ++       SA S     +   WL+  +
Sbjct: 119 IKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 12/165 (7%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKI 74
           KL++VG    GK+ +  ++     V        +    +     +     + D  GQ + 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 75  RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134
            A+   Y R   G   V   ++ +   +      QI    +  +  +++  NK DL    
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124

Query: 135 PTAEVADKLELYSLGQRRWSIQ--SCSAISGQGLYEGLDWLSNNI 177
             +  A          R + I     SA + QG+ +    L   I
Sbjct: 125 VESRQAQD------LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (115), Expect = 3e-08
 Identities = 29/174 (16%), Positives = 64/174 (36%), Gaps = 12/174 (6%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE-IVTTTPTIG-----FNVEAVEYKNKSFCVWDVGGQ 71
           +K++++G    GKT+++++    +       TIG       V     K  +  VWD  GQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 72  NKIRALWRHYFRDT----LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
            + ++L   ++R      L       SS     S     L     ++  +   +++    
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 128 QDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN 181
               +    +E + +    SLG     +   SA +   +    + ++ +   +N
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGD--IPLFLTSAKNAINVDTAFEEIARSALQQN 174

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 6e-08
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFN-----VEAVEYKNKSFCVWDVGGQN 72
            K++++G    GKT + Y+   G     T              ++ +     +WD  GQ 
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 73  KIRALWR-HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
           + R     HY+R+   + FV D ++          + +       ++   ++  NK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 132 NVMP 135
           + + 
Sbjct: 123 SAIQ 126

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 7e-08
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 16/178 (8%)

Query: 14  PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY----KNKSFCVWDVG 69
           PQ  IK ++VG  A GKT +L                F+  +       K  +  +WD  
Sbjct: 3   PQ-AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 70  GQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQD 129
           GQ     L    +  T                  R + +  +  +   N  +++   K D
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLD 120

Query: 130 LPNVMPTAEVADKLELYSLGQRRWSIQS----------CSAISGQGLYEGLDWLSNNI 177
           L +   T E   + +L  +   +    +          CSA++ +GL    D     +
Sbjct: 121 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 9/166 (5%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFC-----VWDVGGQ 71
            +K+ ++G    GK++I+++                    +            +WD  G 
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63

Query: 72  NKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP 131
            + RAL   Y+R +     V D +  E  S  +N + ++      S    +         
Sbjct: 64  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 123

Query: 132 NVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
                   A                  SA +   + E    +S  I
Sbjct: 124 VREVMERDAKDY----ADSIHAIFVETSAKNAININELFIEISRRI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 4e-07
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCV----WDVGGQNK 73
            KL+++G    GK+ +  +   G  V        +    + +           D  G  +
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
             A+   Y ++  G   V   + +   ++ ++   QIL   +  +  +++  NK DL + 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 134 MPTAEVADKLELYSLGQRRWSIQ--SCSAISGQGLYEGLDWLSNNIS 178
                   K +  +L ++  +      SA S   + E    L   I+
Sbjct: 124 RVV----GKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGE----IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN 72
           + K+++VG    GKT +L+           V T          ++ +     +WD  G  
Sbjct: 2   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 61

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
               +    + D+  +    D S  E +     +    + +    N  +L+   K DL  
Sbjct: 62  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRT 120

Query: 133 VMPTAE 138
            + T  
Sbjct: 121 DVSTLV 126

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 7e-06
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 7/165 (4%)

Query: 17  RIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQN 72
           + +L++VG    GK+ +  +      VT       +       ++ +     + D  GQ 
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQE 64

Query: 73  KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
           +  A+   Y R   G   V   +DR    E      QIL   +     +++  NK DL +
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 133 VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
                +   +     L     +    SA     + +    L   I
Sbjct: 125 QRQVTQEEGQQLARQLK---VTYMEASAKIRMNVDQAFHELVRVI 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA----VEYKNKSFCVWDVGGQNKI 74
           KL++VG    GK+ +  +      V        +       ++ +     V D  GQ + 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 75  RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN 132
            A+   Y R   G   V   +D+            IL   +  +  +++ ANK DL +
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 25/167 (14%), Positives = 53/167 (31%), Gaps = 10/167 (5%)

Query: 19  KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY---KNKSFCVWDVGGQNKIR 75
           K+L++G    GK+ +       E        G   +       +  S  V+D+  Q+  R
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62

Query: 76  ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP 135
            L  H          V   +D+    +A     Q+    +  +  +++  NK DL     
Sbjct: 63  WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR--- 119

Query: 136 TAEVADKLELYSLGQRRWSIQ--SCSAISGQGLYEGLDWLSNNISVK 180
                  ++        +  +    SA     +    + +   I ++
Sbjct: 120 --SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 6e-05
 Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 15/174 (8%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIG-FNVEAVEYKNKSFCVW--DVGGQNK 73
           +K ++VG  A GKT +L             PT+      +V    K + +   D  GQ  
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 69

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
              L    +  T          +       + E    L +    N   L+   + DL + 
Sbjct: 70  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDD 128

Query: 134 MPTAEVADKL--------ELYSLGQRRWSIQ--SCSAISGQGLYEGLDWLSNNI 177
             T    + +        +   L +   +     CSA++ +GL    D     I
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 182

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 10/166 (6%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGE----IVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNK 73
            ++ + G    GK++++ +   G      + T       V + +    +  + D  G ++
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
             A+ R           V   + R+ + E +    QI        +  ++    +   + 
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 134 MPTAEVADKLELYSLGQRRWSIQ--SCSAISGQGLYEGLDWLSNNI 177
               + ++   L     R W       SA     + E    L N  
Sbjct: 123 SREVQSSEAEAL----ARTWKCAFMETSAKLNHNVKELFQELLNLE 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 9e-05
 Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 6/151 (3%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTT-PTIGFNVEAVEYKNKSFCVWDVGG--QNKI 74
           +KL + G    GK+ ++ +      +    PT+          +      ++      + 
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 75  RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM 134
                 + R   G   V D +DR    E     + +    +  N  L++  NK DL +  
Sbjct: 63  TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR 122

Query: 135 PTAEVADKLELYSLGQRRWSIQSCSAISGQG 165
             +    +     L     +   CSA +G+G
Sbjct: 123 QVSTEEGEKLATELA---CAFYECSACTGEG 150

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 22/170 (12%)

Query: 22  MVGLDASGKTTILYKMKLGEI-------VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKI 74
           +VG   +GK+++L  M             T +P +G        + + F + D+ G  + 
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV---EVSEEERFTLADIPGIIEG 62

Query: 75  RALWRHYFRDTL-------GLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANK 127
            +  +    + L        L +V+D++D    +           D  L     LV  NK
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 128 QDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
            DL        +AD L      +   ++   SA++G GL    + L   +
Sbjct: 123 VDLLEEEAVKALADALA-----REGLAVLPVSALTGAGLPALKEALHALV 167

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 25/179 (13%)

Query: 22  MVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR------ 75
             G    GK+T++Y++  G+ V      G   + +E + K+  + D+ G   +       
Sbjct: 5   FAGRSNVGKSTLIYRL-TGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 76  ---------ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNEL------SNAA 120
                           ++      VVD      I +   +  +I  D E        +  
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123

Query: 121 LLVFANKQDLPNVMPTA--EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
            +V  NK D    +      +A+K E+  L +        SA  G  +    + +   I
Sbjct: 124 TIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 17/160 (10%), Positives = 48/160 (30%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL 77
           ++L ++G   SGK++++++   G       T     +     +    +  +  +      
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 65

Query: 78  WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA 137
               + D +   F ++  +  +     +     L        AL +   +  +    P  
Sbjct: 66  KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV 125

Query: 138 EVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI 177
               +        +R S     A  G  +      ++  +
Sbjct: 126 VGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 8e-04
 Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 11/166 (6%)

Query: 18  IKLLMVGLDASGKTTILYKMKLGEIVTT----TPTIGFNVEAVEYKNKSFCVWDVGGQNK 73
            K+ ++G  + GK+++  +   G+ V +           +  V  +     + D  GQ++
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64

Query: 74  IRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV 133
                + Y  D  G   V   +  +     +    ++L         +++  NK+DL   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124

Query: 134 MPTAEVADKLELYSLGQRRWSIQ--SCSAISGQGLYEGLDWLSNNI 177
                     E        W+      SA   Q   +    +    
Sbjct: 125 RV-----ISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.97
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.96
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.94
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.94
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.93
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.93
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.92
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.92
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.92
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.91
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.9
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.89
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.87
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.84
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.84
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.84
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.83
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.8
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.79
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.79
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.78
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.76
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.76
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.64
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.58
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.57
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.56
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.46
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.45
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.16
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.12
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.09
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.04
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.03
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.93
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.53
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.53
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.41
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.34
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.31
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.24
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.2
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.15
d1okkd2	207	GTPase domain of the signal recognition particle r	98.14
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.11
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.1
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.01
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.86
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.83
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.82
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.82
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.78
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.75
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.74
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.73
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.73
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.72
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.7
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.69
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.68
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.67
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.65
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.63
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.59
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.57
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.56
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.56
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.49
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.49
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.48
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.48
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.48
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.43
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.43
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.43
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.43
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.42
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.42
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.41
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.39
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.38
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.38
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.36
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.35
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.35
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.32
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.32
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.32
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.3
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.29
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.29
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.29
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.27
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.27
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.26
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.25
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.25
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.24
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.22
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.2
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.2
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.2
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.2
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.19
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.17
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.16
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.16
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.16
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.15
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.15
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.15
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.14
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.13
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.13
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.13
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.12
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.12
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.11
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.1
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.09
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.03
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.01
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.99
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.99
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.99
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.98
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.94
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.89
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.8
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.8
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.78
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.75
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.71
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.68
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.66
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.66
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.66
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.55
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.55
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.29
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.27
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.25
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.18
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.14
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.1
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.08
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.07
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.07
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.01
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.95
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.95
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.94
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.94
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.9
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.86
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.86
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.8
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.8
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.76
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.65
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.62
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.61
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.59
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.55
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.55
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.48
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.45
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.42
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.33
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.22
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.21
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.19
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.15
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.13
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.11
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.09
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.06
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.87
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.86
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.83
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.76
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.75
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.74
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.72
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.26
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.25
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.23
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.19
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	93.97
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.71
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.6
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.29
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.97
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.69
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.55
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.34
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	91.33
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.28
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.09
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.91
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.99
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.95
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.56
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.51
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.29
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	88.83
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.27
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.08
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	87.87
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	87.82
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.15
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.57
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.93
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.71
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	82.68
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	81.63
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	80.93
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.81
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	80.53

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=1.5e-39  Score=218.76  Aligned_cols=179  Identities=50%  Similarity=0.907  Sum_probs=159.1

Q ss_pred             cchHHHHhhhh-CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHh
Q 030233            2 GKLISRLAKRF-FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRH   80 (181)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~   80 (181)
                      |.+++++++++ ...+.+||+++|++|||||||++++.++.+....||.+.........+..+.+||+||++.+...+..
T Consensus         1 ~~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (182)
T d1moza_           1 GNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRC   80 (182)
T ss_dssp             CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGG
T ss_pred             ChhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHh
Confidence            56788888765 45678999999999999999999999998888889999999999999999999999999999999999


Q ss_pred             hccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           81 YFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      ++..++++++|+|++++.++.....++...+......+.|+++|+||+|+.+..+.+++.+.+....+...++.+++|||
T Consensus        81 ~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA  160 (182)
T d1moza_          81 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSA  160 (182)
T ss_dssp             TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBG
T ss_pred             hhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence            99999999999999999999999999988887776678999999999999888888999988877766777889999999


Q ss_pred             cCCCCHHHHHHHHHhhhhcc
Q 030233          161 ISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ++|+|++++|++|.+.+.++
T Consensus       161 ~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         161 IKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GGTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHc
Confidence            99999999999999998775

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=5.5e-38  Score=209.46  Aligned_cols=169  Identities=58%  Similarity=1.029  Sum_probs=154.5

Q ss_pred             hhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEE
Q 030233            9 AKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGL   88 (181)
Q Consensus         9 ~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~i   88 (181)
                      +++.+..+.+||+++|+++||||||+++++++.++...+|.+............+.+||+||.+.++..+..+++.++++
T Consensus         4 ~~~~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   83 (173)
T d1e0sa_           4 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   83 (173)
T ss_dssp             HHHHHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred             hhhhhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceE
Confidence            34445677899999999999999999999999988888999999888888999999999999999999999999999999


Q ss_pred             EEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           89 TFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      ++|+|+++.+++.....++...++.....+.|+++++||+|+.+.....++...+....+...++.+++|||++|+||++
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            99999999999999999999988876667899999999999998888888888887777777788999999999999999


Q ss_pred             HHHHHHhhh
Q 030233          169 GLDWLSNNI  177 (181)
Q Consensus       169 l~~~i~~~~  177 (181)
                      +|++|.+.+
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999998876

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=6.9e-38  Score=209.51  Aligned_cols=166  Identities=43%  Similarity=0.829  Sum_probs=152.3

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ..+++++||+++|++|||||||++++.++.+....++.+++...+...+..+.+||++|++.+...+..+++.+|++++|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   90 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence            45678899999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ||++++.++.....++..+.......++|+++++||+|+......+.+.+.+.........+.+++|||++|+|++++|+
T Consensus        91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~  170 (176)
T d1fzqa_          91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN  170 (176)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             eccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999998888776667899999999999998888888888777666677788999999999999999999


Q ss_pred             HHHhhh
Q 030233          172 WLSNNI  177 (181)
Q Consensus       172 ~i~~~~  177 (181)
                      ||.+.+
T Consensus       171 ~l~~~i  176 (176)
T d1fzqa_         171 WVCKNV  176 (176)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            998864

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=1.1e-37  Score=206.45  Aligned_cols=165  Identities=45%  Similarity=0.866  Sum_probs=150.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      +.+||+++|++|||||||+++|.+..+....||.+.....+...+..+.+||+||++.++..+..+++.++++++|+|++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   80 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA   80 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence            46899999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233           96 DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      +..++.....++...+......+.|+++|+||+|+.+....++....+.........+.+++|||++|+|++++|++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  160 (165)
T d1ksha_          81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD  160 (165)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999998888877766678999999999999887888888777766666677889999999999999999999999


Q ss_pred             hhhcc
Q 030233          176 NISVK  180 (181)
Q Consensus       176 ~~~~~  180 (181)
                      ++.+|
T Consensus       161 ~i~~r  165 (165)
T d1ksha_         161 DISSR  165 (165)
T ss_dssp             HHHTC
T ss_pred             HHHcC
Confidence            88764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=2.6e-37  Score=204.54  Aligned_cols=162  Identities=32%  Similarity=0.623  Sum_probs=149.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      +++||+++|++++|||||++++.++.+ ..+.||.+.+...+...+..+.+||+||++.+...+..++..++++++|||+
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   80 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA   80 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence            368999999999999999999999885 4577899999999999999999999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLS  174 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  174 (181)
                      ++++++.....++..++.....++.|+++|+||.|+.+..+.+++.+.++...+....++++++||++|+|++++|++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~  160 (164)
T d1zd9a1          81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI  160 (164)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence            99999999999999998887778899999999999988888888888887777777888999999999999999999999


Q ss_pred             hhh
Q 030233          175 NNI  177 (181)
Q Consensus       175 ~~~  177 (181)
                      +.+
T Consensus       161 ~~~  163 (164)
T d1zd9a1         161 QHS  163 (164)
T ss_dssp             HTC
T ss_pred             Hcc
Confidence            875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-37  Score=205.03  Aligned_cols=158  Identities=16%  Similarity=0.144  Sum_probs=115.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEEC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~   94 (181)
                      +||+++|++|||||||++++.+..+....++.+..+. .+..  ....+.+||++|++.+..++..+++.+|++++|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            7999999999999999999999887666666555443 3444  447889999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233           95 SDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      +++++++.+..|+..+........+|+++|+||+|+....  +..+.....     ...+++|++|||++|.|++++|++
T Consensus        82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~~f~~  156 (168)
T d2gjsa1          82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA-----VVFDCKFIETSAALHHNVQALFEG  156 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTSEEEECBTTTTBSHHHHHHH
T ss_pred             cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHH-----HhcCCEEEEEeCCCCcCHHHHHHH
Confidence            9999999999999988766555679999999999986532  233322211     334568999999999999999999


Q ss_pred             HHhhhhcc
Q 030233          173 LSNNISVK  180 (181)
Q Consensus       173 i~~~~~~~  180 (181)
                      |++.+..+
T Consensus       157 l~~~i~~~  164 (168)
T d2gjsa1         157 VVRQIRLR  164 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-36  Score=199.48  Aligned_cols=157  Identities=22%  Similarity=0.326  Sum_probs=127.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ++||+++|+++||||||+++++++.+. .+.||.+.+......    ....+.+||++|++.+..++..+++.++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            589999999999999999999998854 456888877665544    557899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ||+++++||+.+..|+..+.+..  +++|+++|+||+|+......++...     .+...+++|++|||++|.|++++|+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sak~~~~v~e~f~  155 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIV-----FHRKKNLQYYDISAKSNYNFEKPFL  155 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHH-----HHSSCSSEEEEEBTTTTBTTTHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHH-----HHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999998886642  5799999999999876544332221     1234567899999999999999999


Q ss_pred             HHHhhhhcc
Q 030233          172 WLSNNISVK  180 (181)
Q Consensus       172 ~i~~~~~~~  180 (181)
                      +|.+.+.+.
T Consensus       156 ~l~~~l~~~  164 (170)
T d1i2ma_         156 WLARKLIGD  164 (170)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHccC
Confidence            999987653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=202.98  Aligned_cols=162  Identities=22%  Similarity=0.295  Sum_probs=129.5

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccc-cCcccee-EEEEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTT-TPTIGFN-VEAVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~-~~~~~~~-~~~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      |.+.+||+++|++|||||||+++++++.+... .++.... ...+...  ...+.+||++|.+++...+..+++.+|+++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            56789999999999999999999999886543 4444322 2234443  467889999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|||+++++|+..+..|+..+.+.....+.|+++|+||+|+...  ...++.....     ...+++|++|||++|.||+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~  157 (173)
T d2fn4a1          83 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG-----ASHHVAYFEASAKLRLNVD  157 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred             eecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHH-----HhcCCEEEEEeCCCCcCHH
Confidence            99999999999999999988876544468999999999998643  2233332222     2345689999999999999


Q ss_pred             HHHHHHHhhhhcc
Q 030233          168 EGLDWLSNNISVK  180 (181)
Q Consensus       168 ~l~~~i~~~~~~~  180 (181)
                      ++|+.+++.+.++
T Consensus       158 e~f~~l~~~i~k~  170 (173)
T d2fn4a1         158 EAFEQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=196.58  Aligned_cols=160  Identities=19%  Similarity=0.243  Sum_probs=130.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEE-EE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAV-EY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~-~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      |+++||+++|++|||||||+++++.+.+.. +.++.+...... ..  ....+.+||++|++.+...++.+++.+|++++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            578999999999999999999999998654 566766544332 22  55789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||+++++||+.+..|+..+.+....+++|+++|+||+|+...  ...++......    ...+++|++|||++|+||++
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e  156 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNE  156 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHH
Confidence            9999999999999999988876544568999999999998653  22333222221    12456899999999999999


Q ss_pred             HHHHHHhhhh
Q 030233          169 GLDWLSNNIS  178 (181)
Q Consensus       169 l~~~i~~~~~  178 (181)
                      +|++|++++.
T Consensus       157 ~F~~l~~~i~  166 (167)
T d1c1ya_         157 IFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-35  Score=197.41  Aligned_cols=158  Identities=21%  Similarity=0.369  Sum_probs=127.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      -+||+++|++|||||||+++++++.+. .+.++.+.+......    ....+.+|||||++.+..++..+++.+|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            479999999999999999999988854 456666655544333    346899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||+++++++.....|+..+... .....|+++++||+|+.+..  +.++.....     ...+++|++|||++|+|++++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~e~  158 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVKQT  158 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHH-----HHcCCEEEEecCCCCcCHHHH
Confidence            9999999999999888776443 33689999999999986532  334333322     234558999999999999999


Q ss_pred             HHHHHhhhhcc
Q 030233          170 LDWLSNNISVK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |++|.+.+.+|
T Consensus       159 f~~l~~~i~ek  169 (169)
T d3raba_         159 FERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhC
Confidence            99999998764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=191.88  Aligned_cols=176  Identities=45%  Similarity=0.838  Sum_probs=154.7

Q ss_pred             cchHHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh
Q 030233            2 GKLISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY   81 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~   81 (181)
                      |.|+++++ .++..+.+||+++|.+|||||||++++.++.+....++.+.........+..+.+||++|.+.....+...
T Consensus         1 ~~~~~~~~-~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   79 (177)
T d1zj6a1           1 GILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY   79 (177)
T ss_dssp             CHHHHHHH-HHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred             ChhHHHHH-HHhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhh
Confidence            56888888 66668889999999999999999999999998888888888888888899999999999999988889999


Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeecc
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAI  161 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (181)
                      +..++++++++|.++.+++.....+.............|+++|+||+|+......+++.+..........+.+++++||+
T Consensus        80 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  159 (177)
T d1zj6a1          80 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL  159 (177)
T ss_dssp             HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             hccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCC
Confidence            99999999999999999999988877777776666789999999999998888888888888777777788899999999


Q ss_pred             CCCCHHHHHHHHHhhhh
Q 030233          162 SGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       162 ~~~~i~~l~~~i~~~~~  178 (181)
                      +|+|+++++++|.+++.
T Consensus       160 tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         160 TGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             TTBTHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhC
Confidence            99999999999998864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.1e-35  Score=197.39  Aligned_cols=159  Identities=23%  Similarity=0.288  Sum_probs=127.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      -+||+++|+++||||||+++++++.+. .+.||.+..+.. +..  ....+.+||++|.+.+..++..+++.+|++++||
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   83 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVF   83 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEe
Confidence            479999999999999999999988854 566787765433 333  4468889999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+++++++..+..|+..+.+.....++|+++|+||+|+.+.  .+.++.....     ...+++|++|||++|.||+++|
T Consensus        84 d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gv~e~f  158 (168)
T d1u8za_          84 SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKVF  158 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHHH
T ss_pred             eccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHH-----HHcCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999988876544468999999999998653  3334433322     2345689999999999999999


Q ss_pred             HHHHhhhhcc
Q 030233          171 DWLSNNISVK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      ++|++.+.+|
T Consensus       159 ~~l~~~i~~r  168 (168)
T d1u8za_         159 FDLMREIRAR  168 (168)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHCc
Confidence            9999988764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-35  Score=192.86  Aligned_cols=160  Identities=19%  Similarity=0.237  Sum_probs=130.3

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ++++||+++|+++||||||+++++++.+.. +.++.+........   ....+.+||++|.+.+...++.+++.++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            457999999999999999999999988655 46666655443222   45789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC-HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP-TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      |+|++++.+++....|+..+.+.....++|+++|+||+|+..... .++.....     ...+++|++|||++|+||+++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~g~gi~e~  155 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA-----RSYGIPYIETSAKTRQGVEDA  155 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH-----HHhCCeEEEEcCCCCcCHHHH
Confidence            999999999999999998887654446799999999999865433 33332222     234457999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |++|++.+.+
T Consensus       156 f~~i~~~i~~  165 (166)
T d1ctqa_         156 FYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=100.00  E-value=1.7e-33  Score=184.93  Aligned_cols=160  Identities=71%  Similarity=1.162  Sum_probs=144.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCc
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDR   97 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   97 (181)
                      +||+++|++|||||||+++++++.+....++..............+.+||++|...+...+..++..++++++++|..++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence            58999999999999999999998877766666666677778999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233           98 ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      .++.....++..++........|+++++||.|+.+.....++........+...++++++|||++|+|++++|++|.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_          81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            99999999999988877777899999999999988888888888776666677788999999999999999999999875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-36  Score=198.60  Aligned_cols=159  Identities=16%  Similarity=0.237  Sum_probs=127.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      |+++||+++|++|||||||+++++++.+.. +.++.+..... ...  ....+.+||++|++.+...+..+++.+|++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            578999999999999999999999988644 45666543332 223  34688999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||+++++++..+..|+..+......+++|+++|+||+|+...  ...++.....     ...+++|++|||++|.||++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~g~~i~e  155 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-----EEWGCPFMETSAKSKTMVDE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSCEEEECTTCHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHH-----HHcCCeEEEECCCCCcCHHH
Confidence            9999999999999999988876545578999999999998643  2233322221     22345799999999999999


Q ss_pred             HHHHHHhhhh
Q 030233          169 GLDWLSNNIS  178 (181)
Q Consensus       169 l~~~i~~~~~  178 (181)
                      +|++|++++.
T Consensus       156 ~f~~i~~~i~  165 (167)
T d1kaoa_         156 LFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=197.73  Aligned_cols=160  Identities=16%  Similarity=0.201  Sum_probs=128.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEE-EEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAV-EYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      .+||+++|++|||||||+++++++.+. .+.||.+...... ...  ...+.+||++|.+.+...+..+++.+|++++||
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            689999999999999999999998864 4578887654433 333  367888999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcC-CCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           93 DSSDRERISEARNELHQILSD-NELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      |+++++++..+..|+..+.+. ....++|+++|+||+|+...  .+.++.....     ...+++|++|||++|+||+++
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~-----~~~~~~~~e~Sak~~~~v~e~  156 (171)
T d2erxa1          82 SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKEL  156 (171)
T ss_dssp             ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHHH
T ss_pred             ecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHH-----HHcCCeEEEEcCCCCcCHHHH
Confidence            999999999999998877553 23367899999999998543  3333333322     234568999999999999999


Q ss_pred             HHHHHhhhhccC
Q 030233          170 LDWLSNNISVKN  181 (181)
Q Consensus       170 ~~~i~~~~~~~~  181 (181)
                      |+.|.+.+.+++
T Consensus       157 f~~l~~~~~~~~  168 (171)
T d2erxa1         157 FQELLNLEKRRT  168 (171)
T ss_dssp             HHHHHHTCCSSC
T ss_pred             HHHHHHHHHHhh
Confidence            999999887764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-35  Score=196.88  Aligned_cols=160  Identities=20%  Similarity=0.210  Sum_probs=130.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ..+||+++|+++||||||+++++++.+. .+.||.+..... +..  ....+.+||++|++.+...+..+++.+|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            4689999999999999999999998854 456666644333 333  447888999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCC-CHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQ-GLYE  168 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~  168 (181)
                      ||+++++||..+..|+..+.+.....+.|+++++||+|+...  .+.++..+..     ...+++|++|||++|. ||++
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~-----~~~~~~~~e~Sak~~~~nV~~  157 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNVDK  157 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHH-----HHcCCEEEEEcCCCCCcCHHH
Confidence            999999999999999998876555568999999999998764  3344433322     2344579999999886 9999


Q ss_pred             HHHHHHhhhhcc
Q 030233          169 GLDWLSNNISVK  180 (181)
Q Consensus       169 l~~~i~~~~~~~  180 (181)
                      +|..|++.+.++
T Consensus       158 ~F~~l~~~i~~~  169 (169)
T d1x1ra1         158 TFHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=191.68  Aligned_cols=160  Identities=21%  Similarity=0.241  Sum_probs=126.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      +++||+++|++|||||||+++++++.+. .+.||.+.... .+...  ...+.+||++|.+.+...+..+++.+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            4689999999999999999999998854 45666664332 23343  46899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||.++++|+..+..|+..++........|+++|+||+|+...  ...++.....     +..+++|++|||++|.||+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~~~~i~e~  158 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLA-----RQLKVTYMEASAKIRMNVDQA  158 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHH-----HHcCCEEEEEcCCCCcCHHHH
Confidence            999999999999999988776544568999999999998654  3344433332     234568999999999999999


Q ss_pred             HHHHHhhhhcc
Q 030233          170 LDWLSNNISVK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |.+|++.+.++
T Consensus       159 f~~l~~~i~k~  169 (171)
T d2erya1         159 FHELVRVIRKF  169 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-35  Score=193.17  Aligned_cols=156  Identities=20%  Similarity=0.337  Sum_probs=127.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++|||||||++++.++.+. .+.++.+........    ....+.+||++|++.+...+..++..++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999988854 456676666554443    4578899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      |+++++++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++|++|||++|+||+++|
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~~v~e~f  154 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKA-----KELNVMFIETSAKAGYNVKQLF  154 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHHH-----HHcCCEEEEecCCCCcCHHHHH
Confidence            9999999999999998876543 257999999999998642  3333333322     2345579999999999999999


Q ss_pred             HHHHhhhhc
Q 030233          171 DWLSNNISV  179 (181)
Q Consensus       171 ~~i~~~~~~  179 (181)
                      ++|++++..
T Consensus       155 ~~i~~~l~g  163 (164)
T d1yzqa1         155 RRVAAALPG  163 (164)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhhCC
Confidence            999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=195.27  Aligned_cols=157  Identities=19%  Similarity=0.270  Sum_probs=125.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++|||||||+++++++.+.. ..++.+.+..  .+...  ...+.+|||||++.+...++.+++.++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            4899999999999999999999988643 4555554433  34443  46788999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|++++.++.....|+..+.+. .....|+++|+||+|+.+.  .+.++.....     ...++++++|||++|+||+++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~-----~~~~~~~~~~SAktg~gV~e~  158 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVEKL  158 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHH
T ss_pred             eecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHH-----HhCCCEEEEEccCCCCCHHHH
Confidence            9999999999999999887653 2257999999999998653  2333333222     234457999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |.+|++++..
T Consensus       159 f~~l~~~l~~  168 (171)
T d2ew1a1         159 FLDLACRLIS  168 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-35  Score=193.56  Aligned_cols=158  Identities=22%  Similarity=0.311  Sum_probs=128.8

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLT   89 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii   89 (181)
                      ++++||+++|+++||||||+++++++.+. .+.+|.+........    ....+.+||++|++.+..++..+++.+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            57899999999999999999999998854 456677766554333    3456789999999999999999999999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|||+++++++..+..|+..+... .....|+++|+||+|+...  ...++.....     ...+++|++|||++|.||+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAk~~~nV~  155 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ  155 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHH-----HHcCCEEEEEecCCCCCHH
Confidence            999999999999999988776543 3368999999999998643  3344433322     2345689999999999999


Q ss_pred             HHHHHHHhhhh
Q 030233          168 EGLDWLSNNIS  178 (181)
Q Consensus       168 ~l~~~i~~~~~  178 (181)
                      ++|.+|++++.
T Consensus       156 e~f~~l~~~i~  166 (167)
T d1z0ja1         156 ELFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhCC
Confidence            99999999874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=195.38  Aligned_cols=158  Identities=21%  Similarity=0.293  Sum_probs=122.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      ..+||+++|++|||||||+++++++.+.. +.||.+........    ....+.+||++|++.+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            46899999999999999999999988654 56777765555433    35789999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||+++++||+.+..|+..+.... ....|+++++||+|+...  .+.++.....     ...+++|++|||++|.||++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a-----~~~~~~~~e~Sak~~~~v~e  155 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIEE  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHHH
T ss_pred             EEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHHHH-----HHcCCeEEEEecCCCcCHHH
Confidence            999999999999999988775432 257899999999998653  3344443332     23456899999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|++|++++.+
T Consensus       156 ~F~~l~~~i~~  166 (167)
T d1z08a1         156 LFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-36  Score=196.96  Aligned_cols=156  Identities=19%  Similarity=0.319  Sum_probs=127.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++|||||||+++++++.+ ..+.+|.+.+......    ....+.+||++|++.+...+..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999998875 4567787765554433    346889999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||++++++++.+..|+..+.+..  +++|+++|+||+|+.+.  ...++.....     +..+++|++|||++|.||+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~e~  154 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVSEV  154 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSHHH
T ss_pred             EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHH-----HHcCCEEEEeccCCCcCHHHH
Confidence            99999999999999998876542  57999999999998653  2333333322     234568999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |++|++++.+
T Consensus       155 f~~l~~~~lq  164 (164)
T d1z2aa1         155 FKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999988753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=192.13  Aligned_cols=162  Identities=22%  Similarity=0.261  Sum_probs=124.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +.||+++|++|||||||+++++++.+.. +.||.+..... ...  ....+.+||++|++.+...+..+++.+|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            4789999999999999999999988654 56666644322 222  4467999999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc---------cc-CCccEEEEEeeccC
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY---------SL-GQRRWSIQSCSAIS  162 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~Sa~~  162 (181)
                      |+++++||+....|+...+.... ++.|+++|+||+|+.+..............         .+ .....+|++|||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHhC-CCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999888877766533 579999999999987532222111111100         00 11235899999999


Q ss_pred             CCCHHHHHHHHHhhhhc
Q 030233          163 GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (181)
                      |.||+++|+.+.+++.+
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999988653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=192.10  Aligned_cols=157  Identities=21%  Similarity=0.326  Sum_probs=128.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++|||||||+++++++.+. .+.++.+........    ....+.+||++|++.+...+..+++.++++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            689999999999999999999988864 456777766654433    347899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|+++++++.....|+..+.+. ..++.|+++|+||+|+...  .+.++.....     ...+++|++|||++|+||+++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~-----~~~~~~~~e~SAk~g~~V~e~  159 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNVNEI  159 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHHH-----HhcCCEEEEeeCCCCCCHHHH
Confidence            9999999999999998887653 2368999999999998653  2333333222     234568999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |++|++.+.+
T Consensus       160 f~~l~~~i~~  169 (170)
T d1r2qa_         160 FMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHTSCC
T ss_pred             HHHHHHHHhh
Confidence            9999998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=195.82  Aligned_cols=159  Identities=16%  Similarity=0.168  Sum_probs=129.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE-EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE-AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .+.+||+++|++|||||||+++++++.+. .+.||.+..+. .+..  ....+.+||++|.+.+..++..+++.+|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            45689999999999999999999988865 45777776543 3344  34678899999999998888899999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||+++++++..+..|+..+.+.....++|+++|+||+|+...  .+.++.....     ...+++|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a-----~~~~~~~~e~Sak~~~~v~~  156 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD  156 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECCTTCHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHH-----HHcCCEEEEEecCCCCCHHH
Confidence            9999999999999999988876555568999999999998653  3344433322     23456899999999999999


Q ss_pred             HHHHHHhhhh
Q 030233          169 GLDWLSNNIS  178 (181)
Q Consensus       169 l~~~i~~~~~  178 (181)
                      +|+.|+..+.
T Consensus       157 ~f~~li~~~~  166 (167)
T d1xtqa1         157 VFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=191.43  Aligned_cols=155  Identities=21%  Similarity=0.324  Sum_probs=123.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++++|||||+++++++.+.. +.++.+.+..  .....  ...+.+||++|++.+...+..+++.+|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            4899999999999999999999888554 3444444433  33333  45899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|++++++++....|+..+.+. .....|+++++||+|+....  ..++.....     ...++++++|||++|+||+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Saktg~~v~e~  157 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENVEDA  157 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999887553 33678999999999985432  223332222     234568999999999999999


Q ss_pred             HHHHHhhh
Q 030233          170 LDWLSNNI  177 (181)
Q Consensus       170 ~~~i~~~~  177 (181)
                      |++|.+++
T Consensus       158 f~~i~~~i  165 (166)
T d1z0fa1         158 FLEAAKKI  165 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=192.00  Aligned_cols=162  Identities=21%  Similarity=0.324  Sum_probs=127.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++|||||||++++.++.+. .+.+|.+.+...  +..  ....+.+||++|++.+...+..++..+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            589999999999999999999998854 456777765443  444  346899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ||+++++++.....|+....... ....|+++++||+|+.+......+........++..+++|++|||++|.||+++|.
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999987765532 35789999999999854322221111111111233566899999999999999999


Q ss_pred             HHHhhhhc
Q 030233          172 WLSNNISV  179 (181)
Q Consensus       172 ~i~~~~~~  179 (181)
                      .|.+++.-
T Consensus       162 ~i~~~i~~  169 (170)
T d1ek0a_         162 GIGEKIPL  169 (170)
T ss_dssp             HHHTTSCC
T ss_pred             HHHHHhcc
Confidence            99998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-35  Score=193.77  Aligned_cols=158  Identities=20%  Similarity=0.236  Sum_probs=125.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEE---CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY---KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      .+||+++|++|||||||+++++++.+ ..+.||.+..+.....   ....+.+||++|.+.+. ....+++.++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            58999999999999999999999885 4567888876544332   33789999999998774 5566888999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCC-CHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQ-GLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l  169 (181)
                      |+++++++..+..|+..........+.|+++|+||+|+...  .+.++.....     ...+++|++|||++|+ ||+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a-----~~~~~~~~e~Saktg~gnV~e~  155 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNITEI  155 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCHHHH
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHH-----HHhCCeEEEEccccCCcCHHHH
Confidence            99999999999887765544444468999999999998643  3344433322     2345589999999998 59999


Q ss_pred             HHHHHhhhhcc
Q 030233          170 LDWLSNNISVK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |..|++.+.++
T Consensus       156 F~~l~~~i~~~  166 (168)
T d2atva1         156 FYELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=191.91  Aligned_cols=157  Identities=23%  Similarity=0.327  Sum_probs=126.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++|||||||++++.++.+. .+.++.+.+......    ....+.+||+||++++..++..+++.++++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            489999999999999999999988754 445666655544333    456899999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      +|.++++++..+..|+..+..... .++|+++|+||+|+.....  .+......     ...+++|++|||++|+|++++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sak~~~gi~e~  158 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVEEA  158 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHH
T ss_pred             EecccchhHHHHhhhhcccccccC-CceEEEEEEecccccchhchhhhHHHHHH-----HhCCCEEEEeeCCCCcCHHHH
Confidence            999999999999999988765432 5799999999999754322  22222211     234568999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+++.+.+.+
T Consensus       159 f~~l~~~i~~  168 (174)
T d2bmea1         159 FVQCARKILN  168 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=195.11  Aligned_cols=159  Identities=26%  Similarity=0.433  Sum_probs=127.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE--EEE------------CCeEEEEEEcCCChhhHHHHHhh
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA--VEY------------KNKSFCVWDVGGQNKIRALWRHY   81 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~--~~~------------~~~~~~i~d~~g~~~~~~~~~~~   81 (181)
                      .+||+++|++|||||||+++++++.+.. +.++.+.+...  +.+            ....+.+|||+|++.+..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            4799999999999999999999888543 34454443322  222            23579999999999999999999


Q ss_pred             ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEee
Q 030233           82 FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCS  159 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (181)
                      ++.+|++|+|||++++.+++.+..|+..+........+|+++|+||+|+...  .+.++..+..     ...+++|++||
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~-----~~~~~~~~e~S  159 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFETS  159 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEEEB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHH-----HHcCCEEEEEe
Confidence            9999999999999999999999999988776666678999999999998653  3334433322     22345799999


Q ss_pred             ccCCCCHHHHHHHHHhhhhcc
Q 030233          160 AISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~~~~  180 (181)
                      |++|+||+++|++|.+.+.++
T Consensus       160 ak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         160 AATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999987654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-34  Score=192.12  Aligned_cols=161  Identities=16%  Similarity=0.172  Sum_probs=126.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEE-EE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAV-EY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~-~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      |+.+||+++|++|||||||+++++++.+ ..+.||.+...... ..  ....+.+||++|++++...+..+++.+|++++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            4679999999999999999999999885 45567777554332 22  34679999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--------------HHHHHhhhCccccCCccEEEE
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--------------TAEVADKLELYSLGQRRWSIQ  156 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~  156 (181)
                      |||+++++||+.+..|+...+... ..+.|+++|+||+|+.+...              .++..+...    ...+..|+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~  155 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLAR----DLKAVKYV  155 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HTTCSCEE
T ss_pred             ccccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHH----HcCCCeEE
Confidence            999999999999988777766543 25799999999999864321              111111110    11345799


Q ss_pred             EeeccCCCCHHHHHHHHHhhhhcc
Q 030233          157 SCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       157 ~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +|||++|.||+++|+.+...+.++
T Consensus       156 e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         156 ECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             EEeCCCCcCHHHHHHHHHHHHhcC
Confidence            999999999999999998876543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-34  Score=191.05  Aligned_cols=163  Identities=19%  Similarity=0.176  Sum_probs=124.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      +..+||+++|++|||||||+++++.+.+. .+.+|.+..... +..  ....+.+||++|++.+...+..+++.+|++++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il   86 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   86 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence            45689999999999999999999998854 456776644333 222  44788999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc---------cccC-CccEEEEEeec
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLEL---------YSLG-QRRWSIQSCSA  160 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~Sa  160 (181)
                      |||+++++||++...|+...++.. ..+.|+++|+||+|+.+.............         ..+. .....|++|||
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SA  165 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  165 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             ccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecC
Confidence            999999999999888777776543 358999999999998753221111110000         0001 12347999999


Q ss_pred             cCCCCHHHHHHHHHhhhh
Q 030233          161 ISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~  178 (181)
                      ++|.||+++|+.+.+++.
T Consensus       166 k~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         166 LTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999998764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=191.96  Aligned_cols=157  Identities=22%  Similarity=0.311  Sum_probs=122.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEEE--EE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEAV--EY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~~--~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      -+||+++|++|||||||+++++++.+.. +.++........  ..  ....+.+||++|++.+...+..+++.+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            4799999999999999999999888543 344444333332  22  346889999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||++++++|.....|+..+.+.. ..++|+++|+||+|+...  ...++.....     ...+++|+++||++|.||+++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~a-----~~~~~~~~e~Sa~tg~~V~e~  156 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVEEA  156 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhhhhhhHHHHHHHHH-----HHcCCEEEEecCCCCCCHHHH
Confidence            99999999999999998876543 367999999999997542  2232222222     234568999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |.++.+.+.+
T Consensus       157 f~~i~~~i~~  166 (173)
T d2a5ja1         157 FINTAKEIYR  166 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-33  Score=186.23  Aligned_cols=160  Identities=16%  Similarity=0.245  Sum_probs=114.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE-----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY-----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      -+||+++|+++||||||+++++++.+. .+.++.+........     ....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            379999999999999999999988854 455666655444333     34678999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHc---CCCCCCCeEEEEEeCCCCCCC---CCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           91 VVDSSDRERISEARNELHQILS---DNELSNAALLVFANKQDLPNV---MPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      |||++++.|++....|+..+..   .....++|+++++||+|+.+.   .+.++..+...    .....+|++|||++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~e~SA~~g~  157 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKNAI  157 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTTTB
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHH----HcCCCeEEEEeCCCCc
Confidence            9999999999999999877754   233457899999999998653   22233222211    1123469999999999


Q ss_pred             CHHHHHHHHHhhhhcc
Q 030233          165 GLYEGLDWLSNNISVK  180 (181)
Q Consensus       165 ~i~~l~~~i~~~~~~~  180 (181)
                      ||+++|++|.+.+.++
T Consensus       158 gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         158 NVDTAFEEIARSALQQ  173 (175)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999887665

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-33  Score=185.54  Aligned_cols=156  Identities=22%  Similarity=0.393  Sum_probs=123.1

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEECC--eEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYKN--KSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++|||||||++++.++.+. .+.++.+....  .+...+  ..+.+||++|++.+...+..+++.++++++|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            479999999999999999999998854 34455554433  334443  6888999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||.++++|+.....|+..+..... +++|+++|+||+|+.+.  ...+......     ...+.++++|||++|+|++++
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~g~~i~e~  157 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVEEA  157 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcC-CCCcEEEEEeeecccccccchHHHHHHhh-----cccCceEEEEecCCCcCHHHH
Confidence            999999999999999988866533 67999999999998753  2222222221     224458999999999999999


Q ss_pred             HHHHHhhhh
Q 030233          170 LDWLSNNIS  178 (181)
Q Consensus       170 ~~~i~~~~~  178 (181)
                      |+++.+.+.
T Consensus       158 f~~l~~~i~  166 (175)
T d2f9la1         158 FKNILTEIY  166 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=188.70  Aligned_cols=164  Identities=21%  Similarity=0.207  Sum_probs=125.2

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .+.+||+++|++|||||||+++|+++.+ ..+.+|.+..... +..  ....+.+||++|++.+...+..+++.+|++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            4679999999999999999999999885 4456777644332 333  45678899999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH-HHhhhCcc--------cc-CCccEEEEEeec
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE-VADKLELY--------SL-GQRRWSIQSCSA  160 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~-~~~~~~~~--------~~-~~~~~~~~~~Sa  160 (181)
                      |||+++++||+.+..|+...++.. ..+.|+++|+||+|+.......+ ........        .+ .....+|++|||
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999988777666543 35789999999999754321111 11110000        00 123368999999


Q ss_pred             cCCCCHHHHHHHHHhhhhc
Q 030233          161 ISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~  179 (181)
                      ++|+||+++|+.+++.+.+
T Consensus       162 k~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCcCHHHHHHHHHHHHcC
Confidence            9999999999999988754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=184.21  Aligned_cols=159  Identities=21%  Similarity=0.341  Sum_probs=128.6

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEE--EEEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVE--AVEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~--~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+||+++|++++|||||++++.++.+.. +.++.+....  .+..  ....+.+|||||++.+..++..++..+|++++|
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v   86 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV   86 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            5899999999999999999999988543 4444444333  3444  346799999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-CHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM-PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGL  170 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (181)
                      ||++++.++.....|+..+.+.......|+++++||.|..... +.++.....     ...+++|++|||++|+|++++|
T Consensus        87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~tg~gv~e~f  161 (177)
T d1x3sa1          87 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQCAF  161 (177)
T ss_dssp             EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHH
T ss_pred             EECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHH-----HHCCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999998776656779999999999986533 333333322     2345689999999999999999


Q ss_pred             HHHHhhhhcc
Q 030233          171 DWLSNNISVK  180 (181)
Q Consensus       171 ~~i~~~~~~~  180 (181)
                      +++++++.+.
T Consensus       162 ~~l~~~l~~~  171 (177)
T d1x3sa1         162 EELVEKIIQT  171 (177)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHccC
Confidence            9999988764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-34  Score=188.49  Aligned_cols=157  Identities=14%  Similarity=0.153  Sum_probs=119.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCc--ccccCccceeEE--EEEE--CCeEEEEEEcCC---ChhhHHHHHhhccCCCE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEI--VTTTPTIGFNVE--AVEY--KNKSFCVWDVGG---QNKIRALWRHYFRDTLG   87 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~--~~~~~~~~~~~~--~~~~--~~~~~~i~d~~g---~~~~~~~~~~~~~~~d~   87 (181)
                      -+||+++|++|+|||||++++++..+  ....++.+....  .+..  ....+.+||+++   ++++  .+..+++.+|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            47999999999999999999998764  334455554433  3344  345678899775   3333  56678899999


Q ss_pred             EEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           88 LTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +|+|||+++++++..+..|+..+......+++|+++|+||+|+...  .+.++....     +...+++|++|||++|+|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~-----a~~~~~~~~e~Sak~g~~  155 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC-----AVVFDCKFIETSAAVQHN  155 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBS
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHH-----HHHcCCeEEEEeCCCCcC
Confidence            9999999999999999999998877666678999999999998653  333333221     123456899999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 030233          166 LYEGLDWLSNNISVK  180 (181)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (181)
                      |+++|+.|++.+..+
T Consensus       156 i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         156 VKELFEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999988765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-34  Score=191.97  Aligned_cols=157  Identities=23%  Similarity=0.352  Sum_probs=127.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEE--EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      -+||+++|+++||||||+++++++.+ ..+.+|.+.+...  +..  ....+.+|||||++.+..++..+++.++++|+|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999998875 4456777766554  333  457889999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||+++++++.....++..+.+. ...+.|+++|+||+|+.+...  .++.....     ...+..|++|||++|.|++++
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e~  159 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVEDA  159 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHHH
T ss_pred             EeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHHHH
Confidence            9999999999999988877543 236899999999999876332  22222222     224457999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+++.+.+.+
T Consensus       160 f~~l~~~i~~  169 (194)
T d2bcgy1         160 FLTMARQIKE  169 (194)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-33  Score=186.76  Aligned_cols=158  Identities=22%  Similarity=0.370  Sum_probs=100.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEE--EEEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVE--AVEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~--~~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      -+||+++|+++||||||+++++++.+. ...++.+.+..  .+...  ...+.+||+||++.+...+..+++.+|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            479999999999999999999987753 44566664443  34443  46788899999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT--AEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      ||++++.++..+..|+..+... ...+.|+++|+||+|.......  ++.....     ...+++|++|||++|+||+++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~g~gv~e~  159 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVENA  159 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHHHH
T ss_pred             EECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHH-----HhcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999998887543 3367999999999998764332  2222221     234568999999999999999


Q ss_pred             HHHHHhhhhcc
Q 030233          170 LDWLSNNISVK  180 (181)
Q Consensus       170 ~~~i~~~~~~~  180 (181)
                      |++|.+.+.++
T Consensus       160 f~~l~~~i~~k  170 (173)
T d2fu5c1         160 FFTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=186.90  Aligned_cols=157  Identities=20%  Similarity=0.338  Sum_probs=118.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc--ccCccceeEEEEE--EC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT--TTPTIGFNVEAVE--YK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTF   90 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~--~~~~~~~~~~~~~--~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~   90 (181)
                      .+||+++|+++||||||+++++++.+..  ..++.+.+.....  ..  ...+.+|||||++.+..++..+++.+|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            5799999999999999999999988543  3445555555433  33  3688999999999999999999999999999


Q ss_pred             EEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC--CHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233           91 VVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVM--PTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      |||+++++++.....++....... ....|+++++||+|+....  +.++.....     ...+++|++|||++|+||++
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~gi~e  159 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLNVDL  159 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHHH-----HHcCCEEEEEeCCCCcCHHH
Confidence            999999999999999988776543 2578999999999987642  233333322     23345799999999999999


Q ss_pred             HHHHHHhhhhc
Q 030233          169 GLDWLSNNISV  179 (181)
Q Consensus       169 l~~~i~~~~~~  179 (181)
                      +|++|++.+.+
T Consensus       160 ~f~~l~~~i~k  170 (170)
T d2g6ba1         160 AFTAIAKELKR  170 (170)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHcCC
Confidence            99999998763

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-33  Score=184.70  Aligned_cols=158  Identities=23%  Similarity=0.379  Sum_probs=123.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|++++|||||+++++++.+. .+.+|.+.+.....+    ....+.+|||||++.+..++..+++.++++++||
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~   82 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY   82 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence            78999999999999999999998854 456777765554333    3467888999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHH
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDW  172 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (181)
                      |++++++++.+..++....... ....|++++++|.|+.......+....+.    ...+++|++|||++|+|++++|++
T Consensus        83 d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~e~f~~  157 (166)
T d1g16a_          83 DITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIFFT  157 (166)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             ECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHHH----HhcCCeEEEECCCCCCCHHHHHHH
Confidence            9999999999988877765543 36789999999999877544444333332    234568999999999999999999


Q ss_pred             HHhhhhcc
Q 030233          173 LSNNISVK  180 (181)
Q Consensus       173 i~~~~~~~  180 (181)
                      |.+.+.++
T Consensus       158 l~~~i~~k  165 (166)
T d1g16a_         158 LAKLIQEK  165 (166)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=100.00  E-value=3.6e-31  Score=175.11  Aligned_cols=166  Identities=48%  Similarity=0.871  Sum_probs=150.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      +++||+++|++|||||||+++++++.+....++.+............+.+|+++|.+.+.......+...+++++++|+.
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC   83 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence            46899999999999999999999999888888888888888889999999999999999999989999999999999999


Q ss_pred             CcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHHHHHHHh
Q 030233           96 DRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSN  175 (181)
Q Consensus        96 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  175 (181)
                      +..++.....++............|+++++||.|+.+.....++........+....++|++|||++|+|++++|++|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_          84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999988888777777666678999999999999988888888887766666777889999999999999999999999


Q ss_pred             hhhccC
Q 030233          176 NISVKN  181 (181)
Q Consensus       176 ~~~~~~  181 (181)
                      .+.+++
T Consensus       164 ~l~~k~  169 (169)
T d1upta_         164 TLKSRQ  169 (169)
T ss_dssp             HHHTCC
T ss_pred             HHHhCC
Confidence            998874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-32  Score=181.42  Aligned_cols=156  Identities=13%  Similarity=0.125  Sum_probs=120.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEE-EEEC--CeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEA-VEYK--NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      ...+||+++|+++||||||+++++++.+....++.+..... +...  ...+.+|||+|++.+.     +++.+|++|+|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            34799999999999999999999999987777766655443 3443  4779999999988754     67789999999


Q ss_pred             EECCCcccHHHHHHHHHHHHc--CCCCCCCeEEEEEeCCCCCCCC----CHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           92 VDSSDRERISEARNELHQILS--DNELSNAALLVFANKQDLPNVM----PTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~--~~~~~~~piilv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      ||+++++||+.+..|+..+..  ......+|+++|+||.|+....    +.++......    ...+++|++|||++|.|
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~----~~~~~~~~e~SAk~~~~  153 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCA----DMKRCSYYETCATYGLN  153 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHH----TSTTEEEEEEBTTTTBT
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHH----HhCCCeEEEeCCCCCcC
Confidence            999999999999888877642  3334678999999999975422    2223322211    34567899999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 030233          166 LYEGLDWLSNNISV  179 (181)
Q Consensus       166 i~~l~~~i~~~~~~  179 (181)
                      ++++|..+++.+.+
T Consensus       154 v~~~F~~l~~~i~~  167 (175)
T d2bmja1         154 VDRVFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-31  Score=177.78  Aligned_cols=159  Identities=16%  Similarity=0.258  Sum_probs=123.9

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEEE--EE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEAV--EY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~~--~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      -+||+++|+++||||||+++++++.+. .+.+|.+......  ..  ....+.+||++|.......+...+..+++++++
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~   85 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT   85 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEE
Confidence            479999999999999999999988854 4556666554332  22  346788999999999999999999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHc---CCCCCCCeEEEEEeCCCCCC-CCCHHHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233           92 VDSSDRERISEARNELHQILS---DNELSNAALLVFANKQDLPN-VMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      +|.+++.+++.+..|+..+..   .....+.|+++|+||+|+.+ ..+.++..+...    .....+|++|||++|+||+
T Consensus        86 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~~~~~e~Sak~~~gI~  161 (174)
T d1wmsa_          86 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNVA  161 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTHH
T ss_pred             EeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCCCeEEEEcCCCCcCHH
Confidence            999999999999988866643   34445789999999999865 334444443322    1234579999999999999


Q ss_pred             HHHHHHHhhhhc
Q 030233          168 EGLDWLSNNISV  179 (181)
Q Consensus       168 ~l~~~i~~~~~~  179 (181)
                      ++|+++++.+..
T Consensus       162 e~f~~l~~~il~  173 (174)
T d1wmsa_         162 AAFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-32  Score=184.71  Aligned_cols=159  Identities=18%  Similarity=0.258  Sum_probs=127.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEEEE----CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAVEY----KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      +||+++|.+|||||||+++++++.+ ..+.+|.+.+......    ....+.+||++|...+...+..++..+|++++|+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            6899999999999999999999885 4556788776665544    4568899999999999988999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcC---CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHHH
Q 030233           93 DSSDRERISEARNELHQILSD---NELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYEG  169 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (181)
                      |.+++.++..+..|+..+...   ....++|+++|+||+|+.+.....+.......   ...+++|++|||++|+||+++
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBSHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH---HhcCCeEEEEcCCCCcCHHHH
Confidence            999999999999998776543   33356899999999998664333322222211   234567999999999999999


Q ss_pred             HHHHHhhhhc
Q 030233          170 LDWLSNNISV  179 (181)
Q Consensus       170 ~~~i~~~~~~  179 (181)
                      |+++++.+.+
T Consensus       160 f~~l~~~i~~  169 (184)
T d1vg8a_         160 FQTIARNALK  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887655

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-32  Score=183.05  Aligned_cols=159  Identities=18%  Similarity=0.218  Sum_probs=124.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccc-ccCccceeEEE-EEE--CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVT-TTPTIGFNVEA-VEY--KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVV   92 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~   92 (181)
                      ++||+++|++|||||||+++++.+.++. +.||.+..... +..  ....+.+||++|++.+...+..+++.+|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            5799999999999999999999998654 56666543333 222  4578899999999999999999999999999999


Q ss_pred             ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--------------CCHHHHHhhhCccccCCccEEEEEe
Q 030233           93 DSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--------------MPTAEVADKLELYSLGQRRWSIQSC  158 (181)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~  158 (181)
                      |+++++||+....++...+.... ++.|+++|+||+|+...              .+.++......    ......|+||
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~----~~~~~~y~E~  156 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAK----QIGAATYIEC  156 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH----HHTCSEEEEC
T ss_pred             ecccCCCHHHHHHHHHHHHhccC-CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHH----HhCCCeEEEE
Confidence            99999999999988877665433 58999999999997532              12222222111    1123479999


Q ss_pred             eccCCCC-HHHHHHHHHhhhhcc
Q 030233          159 SAISGQG-LYEGLDWLSNNISVK  180 (181)
Q Consensus       159 Sa~~~~~-i~~l~~~i~~~~~~~  180 (181)
                      ||++|+| ++++|+.+...+.++
T Consensus       157 SAk~~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         157 SALQSENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHTC
T ss_pred             eCCCCCcCHHHHHHHHHHHHhcC
Confidence            9999985 999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.6e-32  Score=181.45  Aligned_cols=154  Identities=21%  Similarity=0.335  Sum_probs=120.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcc-cccCccceeEEE--EEE--CCeEEEEEEcCCChhhHH-HHHhhccCCCEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIV-TTTPTIGFNVEA--VEY--KNKSFCVWDVGGQNKIRA-LWRHYFRDTLGLT   89 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~~i~d~~g~~~~~~-~~~~~~~~~d~ii   89 (181)
                      +.+||+++|++|||||||+++++++.+. .+.++.+.....  ...  ....+.+||++|...+.. .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            3589999999999999999999988854 445555544433  333  456889999999887765 4778899999999


Q ss_pred             EEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC--CCHHHHHhhhCccccCCccEEEEEeeccC---CC
Q 030233           90 FVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNV--MPTAEVADKLELYSLGQRRWSIQSCSAIS---GQ  164 (181)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~  164 (181)
                      +|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+.  .+.++.....     +..+++|++|||++   |+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAkt~~~~~  155 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA-----DTHSMPLFETSAKNPNDND  155 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEECCSSSGGGGS
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHH-----HHCCCEEEEEecccCCcCc
Confidence            99999999999999999998877655578999999999998653  3444433322     23445799999986   56


Q ss_pred             CHHHHHHHHH
Q 030233          165 GLYEGLDWLS  174 (181)
Q Consensus       165 ~i~~l~~~i~  174 (181)
                      ||+++|++|+
T Consensus       156 ~V~e~F~~lA  165 (165)
T d1z06a1         156 HVEAIFMTLA  165 (165)
T ss_dssp             CHHHHHHHHC
T ss_pred             CHHHHHHHhC
Confidence            9999999874

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.6e-30  Score=169.55  Aligned_cols=157  Identities=38%  Similarity=0.654  Sum_probs=140.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      ||+++|++|+|||||+|++.++.+....||.+.+.......+....+||++|...+...+..++..++++++++|.+++.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   81 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE   81 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence            79999999999999999999999988999999999998889999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcccc-------CCccEEEEEeeccCCCCHHHHHH
Q 030233           99 RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSL-------GQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      ++.....++..........+.|+++++||.|+.......++.........       ....+.+++|||++|+|++++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~  161 (166)
T d2qtvb1          82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ  161 (166)
T ss_dssp             GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred             hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence            99999888888877777788999999999999887777877776654322       34567899999999999999999


Q ss_pred             HHHh
Q 030233          172 WLSN  175 (181)
Q Consensus       172 ~i~~  175 (181)
                      ||.+
T Consensus       162 ~l~~  165 (166)
T d2qtvb1         162 WLSQ  165 (166)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            9976

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.97  E-value=1.9e-29  Score=169.21  Aligned_cols=166  Identities=30%  Similarity=0.589  Sum_probs=136.3

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+.++..||+++|++|||||||++++.++.+....++.+.+...+.+.+.....||+++...+...+...+...++++++
T Consensus         8 ~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (186)
T d1f6ba_           8 GLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFL   87 (186)
T ss_dssp             TCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeee
Confidence            35678899999999999999999999999988888888888888888999999999999998888888999999999999


Q ss_pred             EECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccc------------cCCccEEEEEee
Q 030233           92 VDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYS------------LGQRRWSIQSCS  159 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~S  159 (181)
                      +|.++...+......+..........+.|+++++||.|+.......++........            .....+.+++||
T Consensus        88 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  167 (186)
T d1f6ba_          88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS  167 (186)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECB
T ss_pred             eeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEe
Confidence            99999999999888887777776667899999999999988777777776654321            133467899999


Q ss_pred             ccCCCCHHHHHHHHHhhh
Q 030233          160 AISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       160 a~~~~~i~~l~~~i~~~~  177 (181)
                      |++|+|++++|+||.+++
T Consensus       168 A~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         168 VLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTTTBSHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHhh
Confidence            999999999999999876

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.3e-29  Score=170.75  Aligned_cols=164  Identities=23%  Similarity=0.330  Sum_probs=132.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      +++||+++|+.|||||||++++..+.+ .+.||.|+....+......+.+||++|++.+...+..+++.++++++++|.+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~   79 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS   79 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence            478999999999999999999998877 4679999999999999999999999999999999999999999999999998


Q ss_pred             Ccc----------cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC------------------CCHHHHH-----hh
Q 030233           96 DRE----------RISEARNELHQILSDNELSNAALLVFANKQDLPNV------------------MPTAEVA-----DK  142 (181)
Q Consensus        96 ~~~----------s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~------------------~~~~~~~-----~~  142 (181)
                      +.+          .+.+....+..++......+.|+++++||.|+...                  .+.....     ..
T Consensus        80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f  159 (200)
T d2bcjq2          80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF  159 (200)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred             chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence            754          34555666767777766688999999999997321                  1111111     11


Q ss_pred             hCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          143 LELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      .+......+.+.+++|||++|+||+++|+.+.+.+.++
T Consensus       160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            22222345677899999999999999999999888754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=6.7e-28  Score=162.84  Aligned_cols=162  Identities=25%  Similarity=0.380  Sum_probs=127.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      +++||+++|+.|||||||++++....+    +|.++....+......+.+||++|++.++..+..+++.++++++|+|++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~   76 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHE----AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS   76 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHS----CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCC----CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence            478999999999999999999976544    4567777778889999999999999999999999999999999999998


Q ss_pred             CcccH----------HHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC-----------------CCCHHHHHh----hh-
Q 030233           96 DRERI----------SEARNELHQILSDNELSNAALLVFANKQDLPN-----------------VMPTAEVAD----KL-  143 (181)
Q Consensus        96 ~~~s~----------~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-----------------~~~~~~~~~----~~-  143 (181)
                      +.+++          .+...++..++........|+++++||+|+..                 .....+...    .+ 
T Consensus        77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  156 (195)
T d1svsa1          77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFE  156 (195)
T ss_dssp             GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHH
T ss_pred             ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHH
Confidence            87654          34556677777777778899999999998521                 111111111    11 


Q ss_pred             Cc-cccCCccEEEEEeeccCCCCHHHHHHHHHhhhhccC
Q 030233          144 EL-YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVKN  181 (181)
Q Consensus       144 ~~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  181 (181)
                      .. .....+.+.+++|||++|+||+++|+.+.+.+.++|
T Consensus       157 ~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~n  195 (195)
T d1svsa1         157 DLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  195 (195)
T ss_dssp             TTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhcC
Confidence            11 112345778899999999999999999999888765

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=4.3e-27  Score=156.96  Aligned_cols=154  Identities=16%  Similarity=0.094  Sum_probs=109.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCCh--------hhHHHHHhhccCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQN--------KIRALWRHYFRDT   85 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~~   85 (181)
                      -.|+++|.+|+|||||+|++++........    |...........+..+.+|||||..        .+.......++.+
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a   85 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV   85 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence            369999999999999999999886433222    2334444556688999999999953        2334445667899


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      |++++|+|++++.+  ....++...++.. ..+.|+++|+||+|+.+.  .++..+.....   .....++++||++|+|
T Consensus        86 d~il~v~D~~~~~~--~~~~~i~~~l~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~---~~~~~~~~iSA~~~~g  157 (178)
T d1wf3a1          86 NAVVWVVDLRHPPT--PEDELVARALKPL-VGKVPILLVGNKLDAAKY--PEEAMKAYHEL---LPEAEPRMLSALDERQ  157 (178)
T ss_dssp             SEEEEEEETTSCCC--HHHHHHHHHHGGG-TTTSCEEEEEECGGGCSS--HHHHHHHHHHT---STTSEEEECCTTCHHH
T ss_pred             cceeeeechhhhhc--ccccchhhheecc-ccchhhhhhhcccccccC--HHHHHHHHHhh---cccCceEEEecCCCCC
Confidence            99999999987543  3344554444432 246899999999998653  22322222111   1233688999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 030233          166 LYEGLDWLSNNISV  179 (181)
Q Consensus       166 i~~l~~~i~~~~~~  179 (181)
                      +++++++|.+.+.+
T Consensus       158 i~~L~~~i~~~lpe  171 (178)
T d1wf3a1         158 VAELKADLLALMPE  171 (178)
T ss_dssp             HHHHHHHHHTTCCB
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999998865

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3e-27  Score=160.34  Aligned_cols=163  Identities=28%  Similarity=0.374  Sum_probs=121.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      +-+||+++|++|||||||++++.  ....+.||.|+....+......+.+||++|++.++..+..+++.++++++++|.+
T Consensus         1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~   78 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS   78 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence            35899999999999999999993  3455788999999999999999999999999999999999999999999999998


Q ss_pred             Cc----------ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC------------------CCHHHHHh----hh
Q 030233           96 DR----------ERISEARNELHQILSDNELSNAALLVFANKQDLPNV------------------MPTAEVAD----KL  143 (181)
Q Consensus        96 ~~----------~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~------------------~~~~~~~~----~~  143 (181)
                      +.          ..+.....++..++......+.|+++++||+|+.+.                  ...+...+    .+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f  158 (200)
T d1zcba2          79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF  158 (200)
T ss_dssp             CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred             CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence            64          346677778888888877789999999999997421                  11112211    11


Q ss_pred             Cc--cccCCccEEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          144 EL--YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       144 ~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ..  .......+.++++||++++||+++|+.+.+.+.++
T Consensus       159 ~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         159 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            11  11123455677899999999999999998877654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=8.4e-27  Score=153.04  Aligned_cols=148  Identities=16%  Similarity=0.157  Sum_probs=108.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccCc----cceeEEEEEECCeEEEEEEcCCChhh--------HHHHHhhccCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTPT----IGFNVEAVEYKNKSFCVWDVGGQNKI--------RALWRHYFRDT   85 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~d~~g~~~~--------~~~~~~~~~~~   85 (181)
                      ++|+++|.+|+|||||+|++++.+......+    .......+...+..+.++|+||..+.        ......++..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            6899999999999999999998774332222    22334456678899999999994221        12244567889


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      |++++++|..+..++.....+...+....  .+.|+++|+||+|+.....          ........+++++||++|.|
T Consensus        82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~----------~~~~~~~~~~~~iSAk~~~g  149 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTGEG  149 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTCTT
T ss_pred             cccceeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhHH----------HHHHhCCCcEEEEECCCCCC
Confidence            99999999998877666655444443332  4789999999999754221          11133566899999999999


Q ss_pred             HHHHHHHHHhhh
Q 030233          166 LYEGLDWLSNNI  177 (181)
Q Consensus       166 i~~l~~~i~~~~  177 (181)
                      +++++++|.+++
T Consensus       150 i~~L~~~l~~~l  161 (161)
T d2gj8a1         150 VDVLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhC
Confidence            999999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.94  E-value=4.1e-26  Score=152.25  Aligned_cols=162  Identities=17%  Similarity=0.109  Sum_probs=112.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCccccc----------CccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhcc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTT----------PTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFR   83 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   83 (181)
                      ..+.++|+++|.+++|||||+|++++.......          .+.......+...+..+.++|+||+.++.......+.
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence            467889999999999999999999975422111          1111222334558889999999999999999999999


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHH---hhhCccccCCccEEEEEeec
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVA---DKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      .+|++++|+|+.+...-+. ...+..+ ..   .++|+++|+||+|+.+....+...   +..........+.+++++||
T Consensus        82 ~~d~~ilv~d~~~g~~~~~-~~~~~~~-~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQT-GEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hccccccccccccccchhh-hhhhhhh-hh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            9999999999986533222 2223322 22   478999999999987633222111   11111112334568999999


Q ss_pred             cCCCCHHHHHHHHHhhhhcc
Q 030233          161 ISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ++|+|++++++.|.+.+.+.
T Consensus       157 ~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHHS
T ss_pred             cCCcCHHHHHHHHHhcCCcc
Confidence            99999999999999887654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.7e-25  Score=148.13  Aligned_cols=153  Identities=20%  Similarity=0.182  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCC---------hhhHHHHHhhccCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQ---------NKIRALWRHYFRDT   85 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~---------~~~~~~~~~~~~~~   85 (181)
                      .|+++|.+|+|||||+|+|++........    |.......+......+.++|++|.         ..+......++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            58999999999999999999876443222    333445556778899999999993         22334455667889


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      |+++++.|..+...... ..++..+ +.   .+.|+++|+||+|+.++...+...+....     ....++++||++|.|
T Consensus        82 d~i~~~~~~~~~~~~~~-~~~~~~l-~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~i~iSAk~g~g  151 (171)
T d1mkya1          82 DLVLFVVDGKRGITKED-ESLADFL-RK---STVDTILVANKAENLREFEREVKPELYSL-----GFGEPIPVSAEHNIN  151 (171)
T ss_dssp             SEEEEEEETTTCCCHHH-HHHHHHH-HH---HTCCEEEEEESCCSHHHHHHHTHHHHGGG-----SSCSCEECBTTTTBS
T ss_pred             cEEEEeecccccccccc-ccccccc-cc---ccccccccchhhhhhhhhhhHHHHHHHhc-----CCCCeEEEecCCCCC
Confidence            99999999876543322 2233333 32   36899999999998653222222222211     222468999999999


Q ss_pred             HHHHHHHHHhhhhccC
Q 030233          166 LYEGLDWLSNNISVKN  181 (181)
Q Consensus       166 i~~l~~~i~~~~~~~~  181 (181)
                      +++++++|.+.+.+++
T Consensus       152 id~L~~~i~~~l~e~~  167 (171)
T d1mkya1         152 LDTMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            9999999999988763

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=6.3e-26  Score=151.47  Aligned_cols=154  Identities=23%  Similarity=0.279  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccc---cCccceeEEEEEE-CCeEEEEEEcCCChh-------hHHHHHhhccCCCE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTT---TPTIGFNVEAVEY-KNKSFCVWDVGGQNK-------IRALWRHYFRDTLG   87 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~i~d~~g~~~-------~~~~~~~~~~~~d~   87 (181)
                      .|+++|.+|||||||+|++++......   ..+...+...... .+..+.+|||||...       +.......+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            489999999999999999998763322   2222233333332 567899999999322       22234456678999


Q ss_pred             EEEEEECCCc--ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           88 LTFVVDSSDR--ERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        88 ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      +++++|....  ..+.....++.....  ...+.|+++|+||+|+......+++.+.+     ...+.+++++||++|+|
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~p~iiv~NK~D~~~~~~~~~~~~~~-----~~~~~~~~~iSA~tg~g  155 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG  155 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred             hhhhcccccccccchhhhhhhhhcccc--ccchhhhhhhhhhhhhhhHHHHHHHHHHH-----HhcCCeEEEEEcCCCCC
Confidence            9999998643  222233333322211  11357999999999997744344443333     23456799999999999


Q ss_pred             HHHHHHHHHhhhhc
Q 030233          166 LYEGLDWLSNNISV  179 (181)
Q Consensus       166 i~~l~~~i~~~~~~  179 (181)
                      +++|++.|.+.+..
T Consensus       156 id~L~~~i~~~l~~  169 (180)
T d1udxa2         156 LPALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999888764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=4.4e-25  Score=144.59  Aligned_cols=146  Identities=21%  Similarity=0.247  Sum_probs=107.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCCh--------h-hHHHHHhhccC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQN--------K-IRALWRHYFRD   84 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~--------~-~~~~~~~~~~~   84 (181)
                      +||+++|.+|+|||||+|++++.......+    +.......+...+..+.+|||||..        . ........+..
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            589999999999999999999876433322    2223344566789999999999931        1 11223345678


Q ss_pred             CCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCC
Q 030233           85 TLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQ  164 (181)
Q Consensus        85 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (181)
                      +|++++|+|++++........ .. .+     ...++++++||.|+.+....+++...+..      ..+++++||++|+
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~-~~-~~-----~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------~~~~~~vSA~~g~  147 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKI-LE-RI-----KNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALKGE  147 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHH-HH-HH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTC------STTEEEEEGGGTC
T ss_pred             CCEEEEEEeCCCCcchhhhhh-hh-hc-----ccccceeeeeeccccchhhhHHHHHHhCC------CCcEEEEECCCCC
Confidence            999999999998766544322 22 22     35789999999999988888887776642      2358999999999


Q ss_pred             CHHHHHHHHHhh
Q 030233          165 GLYEGLDWLSNN  176 (181)
Q Consensus       165 ~i~~l~~~i~~~  176 (181)
                      |+++|+++|.+.
T Consensus       148 gi~~L~~~I~ke  159 (160)
T d1xzpa2         148 GLEKLEESIYRE  159 (160)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhc
Confidence            999999998763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=8.4e-26  Score=151.27  Aligned_cols=157  Identities=19%  Similarity=0.224  Sum_probs=101.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCCh-----------h----hHHHHHhhcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQN-----------K----IRALWRHYFR   83 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~-----------~----~~~~~~~~~~   83 (181)
                      .|+++|.+|+|||||+|++++.... ....++++.....+....+.++||||..           .    +.......++
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   80 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeecccccccccceecccCCceeccccccccccccchhhhhhhhhccc
Confidence            5899999999999999999987642 3344444444444433456789999931           1    1222445567


Q ss_pred             CCCEEEEEEECCCcccHHH---------HHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH--HHHHhhhCccccCCcc
Q 030233           84 DTLGLTFVVDSSDRERISE---------ARNELHQILSDNELSNAALLVFANKQDLPNVMPT--AEVADKLELYSLGQRR  152 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~  152 (181)
                      .+|++++|+|+..+.....         ....+...+..   .+.|+++|+||+|+......  ....+.+.. ......
T Consensus        81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~  156 (184)
T d2cxxa1          81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEV-PLSEID  156 (184)
T ss_dssp             GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTC-CGGGHH
T ss_pred             ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhcc-cccccC
Confidence            8999999999864321111         11112222222   37899999999998643211  112222222 122334


Q ss_pred             EEEEEeeccCCCCHHHHHHHHHhhhhcc
Q 030233          153 WSIQSCSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      ..++++||++|+|+++++++|.+.+.+|
T Consensus       157 ~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         157 KVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             HHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            4588999999999999999999998875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=6.4e-26  Score=156.01  Aligned_cols=161  Identities=26%  Similarity=0.365  Sum_probs=126.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~   95 (181)
                      +.+||+++|++|||||||++++..+   ...||.|+....+...+..+.+||++|++.++..|..+++.++++++|+|.+
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~---~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s   81 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRIL---HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS   81 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHH---HCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETT
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcC---CcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcc
Confidence            4689999999999999999999754   3458999999999999999999999999999999999999999999999998


Q ss_pred             Cc----------ccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCC------CCHH----------------------
Q 030233           96 DR----------ERISEARNELHQILSDNELSNAALLVFANKQDLPNV------MPTA----------------------  137 (181)
Q Consensus        96 ~~----------~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~------~~~~----------------------  137 (181)
                      +.          ..+.+....+..++......+.|+++++||+|+..+      ....                      
T Consensus        82 ~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~  161 (221)
T d1azta2          82 SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGED  161 (221)
T ss_dssp             GGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCC
T ss_pred             ccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCc
Confidence            53          356677778888888888889999999999998431      1100                      


Q ss_pred             ----HH----Hhhh----CccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          138 ----EV----ADKL----ELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       138 ----~~----~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                          ..    ...+    .......+.+.++++||.++.||+.+|+.+.+.+.+
T Consensus       162 ~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         162 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence                01    1111    111112245667889999999999999987766654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.8e-24  Score=145.74  Aligned_cols=158  Identities=27%  Similarity=0.396  Sum_probs=115.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE---CCeEEEEEEcCCChhhH-HHHHhhccCCCEEEEEEEC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY---KNKSFCVWDVGGQNKIR-ALWRHYFRDTLGLTFVVDS   94 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~d~~g~~~~~-~~~~~~~~~~d~ii~v~d~   94 (181)
                      +|+++|++|+|||||++++.++.+....++.+.+...+.+   ....+.+||++|++.++ ..+..++..++++++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            5899999999999999999999887777888887777766   56789999999999886 4577788999999999999


Q ss_pred             CCccc-HHHHHHHHHHHHcC--CCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc-----------------------cc
Q 030233           95 SDRER-ISEARNELHQILSD--NELSNAALLVFANKQDLPNVMPTAEVADKLELY-----------------------SL  148 (181)
Q Consensus        95 ~~~~s-~~~~~~~~~~~~~~--~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----------------------~~  148 (181)
                      ++..+ +.....++..++..  ....++|+++|+||+|+....+.+++.+.+...                       ..
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~  161 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL  161 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence            98655 34444555444321  122468999999999998877766655432110                       00


Q ss_pred             -----------CCccEEEEEeeccCCCC------HHHHHHHHHhh
Q 030233          149 -----------GQRRWSIQSCSAISGQG------LYEGLDWLSNN  176 (181)
Q Consensus       149 -----------~~~~~~~~~~Sa~~~~~------i~~l~~~i~~~  176 (181)
                                 ....+.++++|+++|.+      ++++-+|+.+.
T Consensus       162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~  206 (207)
T d2fh5b1         162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  206 (207)
T ss_dssp             SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence                       11356799999999987      77787777653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=5e-25  Score=147.75  Aligned_cols=160  Identities=16%  Similarity=0.074  Sum_probs=106.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccccc----CccceeEEEEEECCeEEEEEEcCCChhhH------------HHHH
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTT----PTIGFNVEAVEYKNKSFCVWDVGGQNKIR------------ALWR   79 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~d~~g~~~~~------------~~~~   79 (181)
                      ..++|+++|++++|||||+|++++.......    .+.......+...+..+.++|+||.....            ....
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV   86 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHH
Confidence            4699999999999999999999987633222    12223334566788999999999954322            2344


Q ss_pred             hhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCC--HHHHHhhhCccccCCccEEEEE
Q 030233           80 HYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMP--TAEVADKLELYSLGQRRWSIQS  157 (181)
Q Consensus        80 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  157 (181)
                      ..++.+|++++|+|+.....  .....+...+..   .+.|+|+|+||+|+.....  ..++.+.+..........++++
T Consensus        87 ~~~~~~dvii~v~d~~~~~~--~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (186)
T d1mkya2          87 DSIEKADVVVIVLDATQGIT--RQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  161 (186)
T ss_dssp             HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhcCCEEEEeecccccch--hhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEE
Confidence            55678999999999975433  222223333333   4789999999999865332  2333333322222233457999


Q ss_pred             eeccCCCCHHHHHHHHHhhhhcc
Q 030233          158 CSAISGQGLYEGLDWLSNNISVK  180 (181)
Q Consensus       158 ~Sa~~~~~i~~l~~~i~~~~~~~  180 (181)
                      +||++|.|+++|+++|.+.+..+
T Consensus       162 vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         162 TSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999998877654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=5.4e-24  Score=143.71  Aligned_cols=162  Identities=13%  Similarity=0.058  Sum_probs=98.1

Q ss_pred             hCCCCc-cEEEEEcCCCCChHHHHHhhhcCCc-ccccCccceeEEEE-EECCeEEEEEEcCCCh----------hh---H
Q 030233           12 FFPQCR-IKLLMVGLDASGKTTILYKMKLGEI-VTTTPTIGFNVEAV-EYKNKSFCVWDVGGQN----------KI---R   75 (181)
Q Consensus        12 ~~~~~~-~~i~~~G~~~~GKssl~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~----------~~---~   75 (181)
                      -.|... .+|+++|.+|+|||||+|++.+... ....+..+.+.... ........+.|++|..          ..   .
T Consensus        17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             HCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccchhhhHH
Confidence            344444 4899999999999999999998652 23233222222211 1223445567777621          11   1


Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEE
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSI  155 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (181)
                      ......+..++++++++|+.++.. .....++..+ ..   .+.|+++|+||+|+.+....++..+............++
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHAPS-NDDVQMYEFL-KY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHH-HH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             hhhhccccchhhhhhhhhcccccc-cccccccccc-cc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCE
Confidence            223344556799999999975532 1222333333 33   368999999999987655554444333222223355689


Q ss_pred             EEeeccCCCCHHHHHHHHHhhhh
Q 030233          156 QSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      +.+||++|+|+++++++|.+.+.
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999998874

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=5.7e-24  Score=142.44  Aligned_cols=155  Identities=22%  Similarity=0.245  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccc---ccCccceeEEEEEE-CCeEEEEEEcCCChh-------hHHHHHhhccCCCE
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVT---TTPTIGFNVEAVEY-KNKSFCVWDVGGQNK-------IRALWRHYFRDTLG   87 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~i~d~~g~~~-------~~~~~~~~~~~~d~   87 (181)
                      +|+++|.+|+|||||+|++.+.....   ...|...+.....+ ....+.+|||||...       ........+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            58999999999999999998876322   12233344444555 446799999999422       11222334456889


Q ss_pred             EEEEEECCCcccHHHHH--HH--HHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-HHHHhhhCccccCCccEEEEEeeccC
Q 030233           88 LTFVVDSSDRERISEAR--NE--LHQILSDNELSNAALLVFANKQDLPNVMPT-AEVADKLELYSLGQRRWSIQSCSAIS  162 (181)
Q Consensus        88 ii~v~d~~~~~s~~~~~--~~--~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (181)
                      ++++++....+......  ..  ...........++|+++|+||+|+.+.... +.+.+.+      ..+.+++.+||++
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v~~iSA~~  156 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPVFPISAVT  156 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCBCCCSSCC
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh------ccCCcEEEEECCC
Confidence            98888876543322221  11  122222334457899999999998763211 1222221      2345789999999


Q ss_pred             CCCHHHHHHHHHhhhhc
Q 030233          163 GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       163 ~~~i~~l~~~i~~~~~~  179 (181)
                      |+|+++|++.|.+.+.+
T Consensus       157 g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         157 REGLRELLFEVANQLEN  173 (185)
T ss_dssp             SSTTHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999998865

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.89  E-value=1.5e-23  Score=141.42  Aligned_cols=159  Identities=18%  Similarity=0.142  Sum_probs=106.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc------ccCcc--ceeEEEEE---------------------ECCeEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT------TTPTI--GFNVEAVE---------------------YKNKSFCV   65 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~------~~~~~--~~~~~~~~---------------------~~~~~~~i   65 (181)
                      +..++|+++|+.++|||||++++.+.....      ...|.  ++......                     .....+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            456899999999999999999998743111      11111  11111110                     12346899


Q ss_pred             EEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHH----HHh
Q 030233           66 WDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAE----VAD  141 (181)
Q Consensus        66 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~----~~~  141 (181)
                      +|+||+.+|.......+..+|++++|+|+.+....+...+.+..+...   ...+++++.||+|+.+.....+    +.+
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence            999999999999998899999999999998653223333333333222   2456889999999876322212    222


Q ss_pred             hhCccccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          142 KLELYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      .+..  .....++++++||++|+|+++|++.+.+.++
T Consensus       160 ~~~~--~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         160 FIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             Hhcc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            2221  2334668999999999999999999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.89  E-value=1.9e-22  Score=137.02  Aligned_cols=162  Identities=14%  Similarity=0.085  Sum_probs=106.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCccc------cc--CccceeEEEEEE--------------------------CC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEIVT------TT--PTIGFNVEAVEY--------------------------KN   60 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~~~------~~--~~~~~~~~~~~~--------------------------~~   60 (181)
                      +..++|+++|+.++|||||+++|++.....      ..  ...+........                          ..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            345799999999999999999998632110      00  001111111100                          12


Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHH
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVA  140 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~  140 (181)
                      ..+.+.|+||+.+|.......+..+|++|+|+|+.+.-.-...++.+..+...   ...|+|+++||+|+.+........
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHH
Confidence            46899999999999999989999999999999997642122223333333222   245899999999997633222221


Q ss_pred             hhhC--ccccCCccEEEEEeeccCCCCHHHHHHHHHhhhhc
Q 030233          141 DKLE--LYSLGQRRWSIQSCSAISGQGLYEGLDWLSNNISV  179 (181)
Q Consensus       141 ~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  179 (181)
                      ....  .......+++++++||++|.|++++++.+..++..
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            1111  11123446789999999999999999999988764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=1.1e-23  Score=145.33  Aligned_cols=158  Identities=20%  Similarity=0.124  Sum_probs=102.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccc---cCcc--ceeEE----------------EEEECCeEEEEEEcCCChhh
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTT---TPTI--GFNVE----------------AVEYKNKSFCVWDVGGQNKI   74 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~---~~~~--~~~~~----------------~~~~~~~~~~i~d~~g~~~~   74 (181)
                      +++.|+++|++++|||||++++++......   ..+.  +....                .+...+..+.++||||++.|
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f   83 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence            345599999999999999999986431110   0010  11000                12235678999999999998


Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHH---HH------------
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTA---EV------------  139 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---~~------------  139 (181)
                      .......+..+|++|+|+|+.+.-.-. ....+..+..    .++|+|+|+||+|+.......   .+            
T Consensus        84 ~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~  158 (227)
T d1g7sa4          84 TTLRKRGGALADLAILIVDINEGFKPQ-TQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ  158 (227)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred             cccchhcccccceEEEEEecccCcccc-hhHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHH
Confidence            888778888999999999997542221 2233333333    378999999999986532110   00            


Q ss_pred             ---Hhh-------hCcc----------ccCCccEEEEEeeccCCCCHHHHHHHHHhhhh
Q 030233          140 ---ADK-------LELY----------SLGQRRWSIQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       140 ---~~~-------~~~~----------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                         ...       +...          .......+++++||.+|.|+++|++.|.....
T Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence               000       0000          00123568999999999999999998876553

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.87  E-value=4.7e-22  Score=133.57  Aligned_cols=158  Identities=17%  Similarity=0.117  Sum_probs=110.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC-------c------------ccccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE-------I------------VTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~-------~------------~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      .++|+++|+.++|||||++++.+..       .            .....|.......+.+.+..+.++||||+.+|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            5799999999999999999997410       0            01122333334455668899999999999999999


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCH-H----HHHhhhCccccCCcc
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPT-A----EVADKLELYSLGQRR  152 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~~  152 (181)
                      ....+..+|++++|+|+.+.-. .+..+.+..+...   ...|+|+++||+|+...... +    ++...+.........
T Consensus        83 ~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            9899999999999999986422 2223333333332   35689999999998753221 2    222222222223345


Q ss_pred             EEEEEeeccCC----------CCHHHHHHHHHhhhh
Q 030233          153 WSIQSCSAISG----------QGLYEGLDWLSNNIS  178 (181)
Q Consensus       153 ~~~~~~Sa~~~----------~~i~~l~~~i~~~~~  178 (181)
                      ++++++||++|          .++.+|++.+.+.+.
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            68999999998          599999999887765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=9.3e-21  Score=128.18  Aligned_cols=142  Identities=18%  Similarity=0.144  Sum_probs=97.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCC--------cc------------cccCccceeEEEEEECCeEEEEEEcCCChhhH
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGE--------IV------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIR   75 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~--------~~------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~   75 (181)
                      ..++|+++|++++|||||+++++...        ..            ...-|+......+.+.+..+.++||||+.+|-
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            35899999999999999999996310        00            01345556666778899999999999999999


Q ss_pred             HHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCCCCCC-HHH----HHhhhCccccC
Q 030233           76 ALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLPNVMP-TAE----VADKLELYSLG  149 (181)
Q Consensus        76 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~-~~~----~~~~~~~~~~~  149 (181)
                      ......+..+|++|+|+|+.+.-..+. .+.+..+...    ++| +++++||+|+.+... .++    +...+....+.
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~----gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  156 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  156 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999976533332 2333333232    554 788899999865321 122    22222222223


Q ss_pred             CccEEEEEeeccC
Q 030233          150 QRRWSIQSCSAIS  162 (181)
Q Consensus       150 ~~~~~~~~~Sa~~  162 (181)
                      ....+++..|+..
T Consensus       157 ~~~i~~i~~sa~~  169 (204)
T d2c78a3         157 GDEVPVIRGSALL  169 (204)
T ss_dssp             TTTSCEEECCHHH
T ss_pred             cccceeeeeechh
Confidence            3456788888864

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.84  E-value=2.1e-19  Score=122.66  Aligned_cols=148  Identities=17%  Similarity=0.133  Sum_probs=100.0

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC--c-c---------------------------------cccCccceeEEEEEE
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE--I-V---------------------------------TTTPTIGFNVEAVEY   58 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~--~-~---------------------------------~~~~~~~~~~~~~~~   58 (181)
                      +..++|+++|+.++|||||+.+|+...  . .                                 ....+.......+..
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            346889999999999999999996311  0 0                                 001223333445556


Q ss_pred             CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCC-CeEEEEEeCCCCCCCCCH-
Q 030233           59 KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSN-AALLVFANKQDLPNVMPT-  136 (181)
Q Consensus        59 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~piilv~nK~D~~~~~~~-  136 (181)
                      .+..+.++|+||+.+|-.........+|++++|+|+.+.-.-+ ..+.+. ++..   .+ ..+|+++||+|+.+.... 
T Consensus        87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~-~~~~---~gv~~iiv~vNK~D~~~~~~~~  161 (222)
T d1zunb3          87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSY-IASL---LGIKHIVVAINKMDLNGFDERV  161 (222)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHH-HHHH---TTCCEEEEEEECTTTTTSCHHH
T ss_pred             cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHH-HHHH---cCCCEEEEEEEcccccccccee
Confidence            7889999999999999999999999999999999997542222 222222 2222   24 458999999999764322 


Q ss_pred             -H----HHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233          137 -A----EVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus       137 -~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                       +    ++........+....++++++||.+|.|+.
T Consensus       162 ~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         162 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence             1    222222222334467789999999999883

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=7.3e-21  Score=129.31  Aligned_cols=160  Identities=21%  Similarity=0.296  Sum_probs=106.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhh----ccCCCEEEEE
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHY----FRDTLGLTFV   91 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~----~~~~d~ii~v   91 (181)
                      ++++|+++|++|+|||||+|+|+++.+.... |.......+...+..+.+||+||++.+...+..+    ...++.++++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~t-t~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~   80 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM   80 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCeE-EecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence            4679999999999999999999998754322 2222333444567788999999998766554443    4456889999


Q ss_pred             EECCC-cccHHHHHHHHHHHH---cCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCc----------------------
Q 030233           92 VDSSD-RERISEARNELHQIL---SDNELSNAALLVFANKQDLPNVMPTAEVADKLEL----------------------  145 (181)
Q Consensus        92 ~d~~~-~~s~~~~~~~~~~~~---~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~----------------------  145 (181)
                      +|+.+ ..++.....++...+   ......++|+++|+||+|+.+....+.+...+..                      
T Consensus        81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  160 (209)
T d1nrjb_          81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINE  160 (209)
T ss_dssp             EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHHHHHHHHHHHHHHHHHHHcCCCceeeeccch
Confidence            99764 556666666553332   2223368999999999999775544332221100                      


Q ss_pred             -c-----------------ccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          146 -Y-----------------SLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       146 -~-----------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                       .                 ........+.+.|++. .+++++.+||.+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~i~ekl  209 (209)
T d1nrjb_         161 EDYAENTLDVLQSTDGFKFANLEASVVAFEGSINK-RKISQWREWIDEKL  209 (209)
T ss_dssp             -------CTTC----CCCGGGSSSCEEEEECBTTT-TBCHHHHHHHHHHC
T ss_pred             hhhHHHHHHhhccccccchhhCcCCceEEEEeecc-ccHHHHHHHHHHhC
Confidence             0                 0011245677778776 56899999988764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.7e-19  Score=119.59  Aligned_cols=154  Identities=19%  Similarity=0.137  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCccccc---Cccc-eeEEEEEECCeEEEEEEcCCChhhHHH--HH-------hhccCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTT---PTIG-FNVEAVEYKNKSFCVWDVGGQNKIRAL--WR-------HYFRDT   85 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~--~~-------~~~~~~   85 (181)
                      .|+++|.+|||||||+|++.+.+.....   .+.. ............+..+|++|.......  ..       .....+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV   86 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence            5899999999999999999987743222   1221 223334447778888999985432221  11       112346


Q ss_pred             CEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCC
Q 030233           86 LGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQG  165 (181)
Q Consensus        86 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (181)
                      ++++++.|..+.  ......+...+..    ...|.++++||.|....  ..++..............+++++||++|+|
T Consensus        87 ~~~l~~~d~~~~--~~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~--~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          87 ELVIFVVEGTRW--TPDDEMVLNKLRE----GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             EEEEEEEETTCC--CHHHHHHHHHHHS----SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             ceeEEEEecCcc--chhHHHHHHHhhh----ccCceeeeeeeeeccch--hhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            778888887643  2333333344333    36788999999998763  222222221111123445799999999999


Q ss_pred             HHHHHHHHHhhhhcc
Q 030233          166 LYEGLDWLSNNISVK  180 (181)
Q Consensus       166 i~~l~~~i~~~~~~~  180 (181)
                      +++|++.|.+.+.+.
T Consensus       159 i~~L~~~i~~~lpe~  173 (179)
T d1egaa1         159 VDTIAAIVRKHLPEA  173 (179)
T ss_dssp             HHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999988653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.1e-18  Score=122.16  Aligned_cols=113  Identities=21%  Similarity=0.156  Sum_probs=86.5

Q ss_pred             CCcc-EEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECCeEEEEEEcCCCh
Q 030233           15 QCRI-KLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQN   72 (181)
Q Consensus        15 ~~~~-~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~   72 (181)
                      .+++ +|+++|+.++|||||+.+++...  ..                   ....++......+.+.+..++++||||+.
T Consensus         3 ~~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~   82 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHV   82 (276)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSS
T ss_pred             hhhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchh
Confidence            3455 59999999999999999996311  00                   11335566667788899999999999999


Q ss_pred             hhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           73 KIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        73 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      +|.......++-+|+.|+|+|+.+.-.-.. ...|....+    .++|.++++||+|...
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T-~~~w~~a~~----~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQS-ETVWRQAEK----YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHH-HHHHHHHHT----TTCCEEEEEECTTSTT
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhH-HHHHHHHHH----cCCCEEEEEecccccc
Confidence            999999999999999999999986433333 233344333    4899999999999876

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.79  E-value=7e-18  Score=117.70  Aligned_cols=108  Identities=15%  Similarity=0.136  Sum_probs=83.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC--cc-------------------cccCccceeEEEEEECCeEEEEEEcCCChhhHHH
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE--IV-------------------TTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRAL   77 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~   77 (181)
                      +|+++|+.++|||||+.+++...  ..                   ....|+......+.+.+.++.++||||+.+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            58999999999999999995321  10                   1223556666778889999999999999999999


Q ss_pred             HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           78 WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        78 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                      ....++-+|++|+|+|+.+.-..+. ...+....+    .++|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t-~~~~~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchh-HHHHHhhhh----ccccccccccccccc
Confidence            9999999999999999985433333 233333333    379999999999964

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=6.1e-19  Score=117.53  Aligned_cols=162  Identities=14%  Similarity=0.066  Sum_probs=88.6

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccce---eEEE-EEECCeEEEEEEcCCC------h--hhHHHH
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGF---NVEA-VEYKNKSFCVWDVGGQ------N--KIRALW   78 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~i~d~~g~------~--~~~~~~   78 (181)
                      +....+.++|+++|.+|+|||||+|++.+..........+.   .... ....+......+.++.      .  ......
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence            44455689999999999999999999998764433222221   1111 2223434333333331      1  111111


Q ss_pred             ---HhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCcc-ccCCccEE
Q 030233           79 ---RHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELY-SLGQRRWS  154 (181)
Q Consensus        79 ---~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~  154 (181)
                         .......+.++.+.+....... ....++.....    ...++++++||+|+..........+.+... .......+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhheeEEEEeecccccchh-HHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence               1122334555666666543322 22333343333    367899999999987643333222222111 11224568


Q ss_pred             EEEeeccCCCCHHHHHHHHHhhh
Q 030233          155 IQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      ++.+||++|.|+++|++.|.+.+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=8.1e-19  Score=121.03  Aligned_cols=149  Identities=15%  Similarity=0.139  Sum_probs=103.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC----------------------Cc------------ccccCccceeEEEEEECC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG----------------------EI------------VTTTPTIGFNVEAVEYKN   60 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~----------------------~~------------~~~~~~~~~~~~~~~~~~   60 (181)
                      +..++|+++|+.++|||||+.+++..                      .+            .....|+......+.+.+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            34689999999999999999999521                      00            112456667777888899


Q ss_pred             eEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCC-eEEEEEeCCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI---SEARNELHQILSDNELSNA-ALLVFANKQDLPNV  133 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~  133 (181)
                      .++.+.|+|||.+|-......+..+|++|+|+|+.+..   ++   .+..+.+.....    .++ ++|+++||+|+.+.
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCCCC
Confidence            99999999999999999999999999999999997421   00   112222222222    244 58899999998763


Q ss_pred             CCH------HHHHhhhCccccCCccEEEEEeeccCCCCHH
Q 030233          134 MPT------AEVADKLELYSLGQRRWSIQSCSAISGQGLY  167 (181)
Q Consensus       134 ~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (181)
                      ...      +++...+.........++++++|+.+|.|+-
T Consensus       160 d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         160 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            321      1222222222223346779999999998863

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.76  E-value=7.9e-19  Score=121.64  Aligned_cols=159  Identities=18%  Similarity=0.224  Sum_probs=90.2

Q ss_pred             hhhCCCCccEEEEEcCCCCChHHHHHhhhcCC--cc--------------------------------cccCccceeEEE
Q 030233           10 KRFFPQCRIKLLMVGLDASGKTTILYKMKLGE--IV--------------------------------TTTPTIGFNVEA   55 (181)
Q Consensus        10 ~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~--~~--------------------------------~~~~~~~~~~~~   55 (181)
                      +....+..++|+++|+.++|||||+.+|+...  ..                                ....+.......
T Consensus        17 ~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~   96 (245)
T d1r5ba3          17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY   96 (245)
T ss_dssp             HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred             HHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccc
Confidence            34455667899999999999999999994211  00                                011222223334


Q ss_pred             EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---cH---HHHHHHHHHHHcCCCCCCCeEEEEEeCCC
Q 030233           56 VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---RI---SEARNELHQILSDNELSNAALLVFANKQD  129 (181)
Q Consensus        56 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~piilv~nK~D  129 (181)
                      +.+....+.+.|+||+..|..........+|++++|+|+.+..   ++   ....+.+..+...   .-.++++++||+|
T Consensus        97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD  173 (245)
T d1r5ba3          97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMD  173 (245)
T ss_dssp             EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTT
T ss_pred             cccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCC
Confidence            5557789999999999999999988999999999999997521   00   0122222222221   2345889999999


Q ss_pred             CCCCCC-H---HHHHhhhCccc-----c-CCccEEEEEeeccCCCCHHHHHH
Q 030233          130 LPNVMP-T---AEVADKLELYS-----L-GQRRWSIQSCSAISGQGLYEGLD  171 (181)
Q Consensus       130 ~~~~~~-~---~~~~~~~~~~~-----~-~~~~~~~~~~Sa~~~~~i~~l~~  171 (181)
                      +..... .   +++...+....     . ....++++++||++|+||.++++
T Consensus       174 ~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         174 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            875332 2   22222222110     0 12367899999999999987643

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=2.2e-18  Score=118.18  Aligned_cols=149  Identities=19%  Similarity=0.229  Sum_probs=96.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCC--c--------------------------------ccccCccceeEEEEEECCeE
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGE--I--------------------------------VTTTPTIGFNVEAVEYKNKS   62 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~--~--------------------------------~~~~~~~~~~~~~~~~~~~~   62 (181)
                      .++|+++|+.++|||||+.+++...  .                                .....+.......+++.+..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            6899999999999999999885310  0                                00112333334456668899


Q ss_pred             EEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc---c---HHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCC-C
Q 030233           63 FCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE---R---ISEARNELHQILSDNELSNAALLVFANKQDLPNVM-P  135 (181)
Q Consensus        63 ~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~-~  135 (181)
                      +.++|||||.+|.......+.-+|++|+|+|+.+.-   +   .....+.+......   ...++|+++||+|+.... +
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSSTTC
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEEEEcccCCCcccc
Confidence            999999999999999999999999999999998631   0   11122222222111   345789999999986532 2


Q ss_pred             HH---H----HHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233          136 TA---E----VADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       136 ~~---~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      ..   .    +..............+++++||..|.|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            21   1    111111222244567899999999999853

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5.4e-16  Score=114.44  Aligned_cols=157  Identities=12%  Similarity=0.131  Sum_probs=90.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCccc-cc---CccceeEE--EEEE-CCeEEEEEEcCCChhhH-----HHHHhhcc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEIVT-TT---PTIGFNVE--AVEY-KNKSFCVWDVGGQNKIR-----ALWRHYFR   83 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~~~-~~---~~~~~~~~--~~~~-~~~~~~i~d~~g~~~~~-----~~~~~~~~   83 (181)
                      .+++|+++|.+|+|||||+|++.|..... ..   ...+++..  .+.. ....+.+|||||.....     ......+.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            46899999999999999999999854211 11   11112221  1222 34468899999943221     12333456


Q ss_pred             CCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC---------CCCHHHHHhhhC------cccc
Q 030233           84 DTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN---------VMPTAEVADKLE------LYSL  148 (181)
Q Consensus        84 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~---------~~~~~~~~~~~~------~~~~  148 (181)
                      .+|.++++.|..    +......+...+..   .+.|+++|.||+|...         ..+.+...+...      +...
T Consensus       135 ~~d~~l~~~~~~----~~~~d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         135 EYDFFIIISATR----FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GCSEEEEEESSC----CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEecCCC----CCHHHHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            788888887753    22222223233333   3789999999999531         111222111110      0111


Q ss_pred             CCccEEEEEeeccC--CCCHHHHHHHHHhhhhc
Q 030233          149 GQRRWSIQSCSAIS--GQGLYEGLDWLSNNISV  179 (181)
Q Consensus       149 ~~~~~~~~~~Sa~~--~~~i~~l~~~i~~~~~~  179 (181)
                      +....++|.+|..+  ..++.++.+.+.+.+.+
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            22233578888654  45899999999887654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.2e-14  Score=104.32  Aligned_cols=113  Identities=19%  Similarity=0.150  Sum_probs=79.0

Q ss_pred             CCCccE-EEEEcCCCCChHHHHHhhhcCC--cc-----------------cccCccceeEEEEEE---------------
Q 030233           14 PQCRIK-LLMVGLDASGKTTILYKMKLGE--IV-----------------TTTPTIGFNVEAVEY---------------   58 (181)
Q Consensus        14 ~~~~~~-i~~~G~~~~GKssl~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~---------------   58 (181)
                      ...++| |+++|+.++|||||+.+++...  ..                 ....|+......+.+               
T Consensus        13 ~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~   92 (341)
T d1n0ua2          13 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   92 (341)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccc
Confidence            345675 9999999999999999996211  10                 011222222222222               


Q ss_pred             -CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCC
Q 030233           59 -KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLP  131 (181)
Q Consensus        59 -~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  131 (181)
                       .+..+.++||||+.+|.......++-+|++++|+|+.+.-..+.. ..+....+.    ++|+++++||+|..
T Consensus        93 ~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~~----~~p~i~viNKiDr~  161 (341)
T d1n0ua2          93 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE----RIKPVVVINKVDRA  161 (341)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT----TCEEEEEEECHHHH
T ss_pred             ccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHHc----CCCeEEEEECcccc
Confidence             346799999999999999999999999999999999865333333 333333333    79999999999963

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.57  E-value=3.5e-14  Score=98.83  Aligned_cols=117  Identities=9%  Similarity=0.054  Sum_probs=75.8

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcCCcccccC----ccceeEEEEEECCeEEEEEEcCCCh-------hhHHHHHh--
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTP----TIGFNVEAVEYKNKSFCVWDVGGQN-------KIRALWRH--   80 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~d~~g~~-------~~~~~~~~--   80 (181)
                      ....++|+++|.+|+|||||+|++++.......+    |...........+..+.++||||-.       ........  
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            3567999999999999999999999987433222    3333444556688999999999942       11222222  


Q ss_pred             hccCCCEEEEEEECCCcc---cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           81 YFRDTLGLTFVVDSSDRE---RISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        81 ~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      .....+++++|++++...   .-......+...+...  --.++++|+||+|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence            223568899999886432   1122223333333221  1257899999999865

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=2.6e-15  Score=107.57  Aligned_cols=151  Identities=15%  Similarity=0.171  Sum_probs=87.9

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc------CCc--ccccCcccee-------------------EEEEEE---------
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL------GEI--VTTTPTIGFN-------------------VEAVEY---------   58 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~------~~~--~~~~~~~~~~-------------------~~~~~~---------   58 (181)
                      .+.++|++.|+||+|||||++++..      ...  ....|+...+                   ...-..         
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            4678999999999999999999973      221  1111111110                   000000         


Q ss_pred             -------------CCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030233           59 -------------KNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA  125 (181)
Q Consensus        59 -------------~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  125 (181)
                                   .+..+.+++|.|......   .+...+|.+++|.++...+.++....-+.++   .   +   ++|+
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---a---D---i~Vv  199 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV---A---D---LIVI  199 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH---C---S---EEEE
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc---c---c---EEEE
Confidence                         234567777777444322   2445689999999876544444433333332   1   2   8899


Q ss_pred             eCCCCCCCCCHHH----HHhhhCc--cccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          126 NKQDLPNVMPTAE----VADKLEL--YSLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       126 nK~D~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      ||+|+........    .......  .....+..+++.|||.+|+|++++++.|.+..
T Consensus       200 NKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         200 NKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             EeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            9999876332221    2222211  11244566899999999999999999997654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.46  E-value=5.5e-15  Score=102.04  Aligned_cols=113  Identities=13%  Similarity=-0.034  Sum_probs=67.3

Q ss_pred             eEEEEEEcCCChhhHHHHHh---h--ccCCCEEEEEEECCC---cccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRALWRH---Y--FRDTLGLTFVVDSSD---RERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~~~~~---~--~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      ..+.+.|+||+..+......   .  ....+.+++++|+..   +...............+   -..|.++++||+|+..
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~  171 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS  171 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence            45899999998775443111   1  224578899999853   22222221111111111   3679999999999887


Q ss_pred             CCCHHHHHhhhCc----------cc---------------cCCccEEEEEeeccCCCCHHHHHHHHHhh
Q 030233          133 VMPTAEVADKLEL----------YS---------------LGQRRWSIQSCSAISGQGLYEGLDWLSNN  176 (181)
Q Consensus       133 ~~~~~~~~~~~~~----------~~---------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  176 (181)
                      .............          ..               .....++++++||++|+|+++++..|.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4332222111100          00               01235679999999999999999988764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.45  E-value=7.8e-13  Score=94.48  Aligned_cols=151  Identities=13%  Similarity=0.106  Sum_probs=90.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC------Cc--ccccCcc-------------------ceeEEE------------
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG------EI--VTTTPTI-------------------GFNVEA------------   55 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~------~~--~~~~~~~-------------------~~~~~~------------   55 (181)
                      .+.++|++.|+||+|||||++++...      ..  ....|+.                   +.....            
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            46789999999999999999999742      00  0000000                   000000            


Q ss_pred             ----------EEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEE
Q 030233           56 ----------VEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFA  125 (181)
Q Consensus        56 ----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  125 (181)
                                +...+..+.+++|.|.........   ..+|.+++|......+.++....-+.+   .      +=++|+
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~---~~~D~~v~v~~p~~GD~iQ~~k~gilE---~------aDi~vv  196 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---DLTDFFLVLMLPGAGDELQGIKKGIFE---L------ADMIAV  196 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---TTSSEEEEEECSCC------CCTTHHH---H------CSEEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhh---cccceEEEEeeccchhhhhhhhhhHhh---h------hheeeE
Confidence                      011446788999998655443333   348999999998766555443322222   2      229999


Q ss_pred             eCCCCCCCCCHHH-----HHhhhCcc--ccCCccEEEEEeeccCCCCHHHHHHHHHhhh
Q 030233          126 NKQDLPNVMPTAE-----VADKLELY--SLGQRRWSIQSCSAISGQGLYEGLDWLSNNI  177 (181)
Q Consensus       126 nK~D~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  177 (181)
                      ||+|+........     ....+...  ....+..+++.+||++|+|+++++++|.+..
T Consensus       197 NKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         197 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             eccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            9999876433211     12222211  1233566899999999999999999997764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.8e-10  Score=81.54  Aligned_cols=113  Identities=13%  Similarity=0.150  Sum_probs=70.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCccccc--Cccce----eEE------------------------------------
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEIVTTT--PTIGF----NVE------------------------------------   54 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~~~~~--~~~~~----~~~------------------------------------   54 (181)
                      -++|+|+|..++|||||+|+++|..+.+..  +++..    ...                                    
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            468999999999999999999998743222  22110    000                                    


Q ss_pred             ----------EEEE---CCeEEEEEEcCCCh-------------hhHHHHHhhccCCCE-EEEEEECCCcccHHHHHHHH
Q 030233           55 ----------AVEY---KNKSFCVWDVGGQN-------------KIRALWRHYFRDTLG-LTFVVDSSDRERISEARNEL  107 (181)
Q Consensus        55 ----------~~~~---~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~  107 (181)
                                .+..   ....+.++|+||..             ....+...++...+. +++|.++...-+-.....+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                      0111   12358899999931             123445556666665 55566666544444444444


Q ss_pred             HHHHcCCCCCCCeEEEEEeCCCCCCC
Q 030233          108 HQILSDNELSNAALLVFANKQDLPNV  133 (181)
Q Consensus       108 ~~~~~~~~~~~~piilv~nK~D~~~~  133 (181)
                      ..+ ..   ...++++|+||+|..++
T Consensus       186 ~~~-~~---~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEV-DP---QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHH-CT---TCSSEEEEEECGGGSCT
T ss_pred             HHh-Cc---CCCceeeEEeccccccc
Confidence            443 22   35789999999998764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.12  E-value=2.7e-10  Score=80.81  Aligned_cols=69  Identities=17%  Similarity=0.205  Sum_probs=42.3

Q ss_pred             eEEEEEEcCCChh-------------hHHHHHhhccCCCEEEEEE-ECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEe
Q 030233           61 KSFCVWDVGGQNK-------------IRALWRHYFRDTLGLTFVV-DSSDRERISEARNELHQILSDNELSNAALLVFAN  126 (181)
Q Consensus        61 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~d~ii~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n  126 (181)
                      ..+.++|+||-..             ...++..++..++.+++++ +......-.....+...+ ..   ...++++|+|
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~-~~---~~~r~i~Vit  206 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVIT  206 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh-Cc---CCCeEEEEEe
Confidence            4688999999321             2345667788888866665 444322222233333333 21   3568999999


Q ss_pred             CCCCCCC
Q 030233          127 KQDLPNV  133 (181)
Q Consensus       127 K~D~~~~  133 (181)
                      |+|....
T Consensus       207 k~D~~~~  213 (306)
T d1jwyb_         207 KLDLMDK  213 (306)
T ss_dssp             CTTSSCS
T ss_pred             ccccccc
Confidence            9998653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.09  E-value=1.2e-10  Score=83.17  Aligned_cols=79  Identities=23%  Similarity=0.265  Sum_probs=46.6

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC-------cccccCccceeEEEEE--------------------ECCeEEEEEEcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE-------IVTTTPTIGFNVEAVE--------------------YKNKSFCVWDVGG   70 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~-------~~~~~~~~~~~~~~~~--------------------~~~~~~~i~d~~g   70 (181)
                      ++|+++|.|+||||||+|++.+..       |.+..|..|+......                    .....+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            579999999999999999998765       2222344454332211                    1225799999999


Q ss_pred             Chhh----HHHHH---hhccCCCEEEEEEECCC
Q 030233           71 QNKI----RALWR---HYFRDTLGLTFVVDSSD   96 (181)
Q Consensus        71 ~~~~----~~~~~---~~~~~~d~ii~v~d~~~   96 (181)
                      --..    .....   ..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            4321    11222   34467899999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.04  E-value=6.4e-10  Score=78.52  Aligned_cols=84  Identities=20%  Similarity=0.220  Sum_probs=57.6

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcc---cc-cCccceeEEEEEEC-----------------CeEEEEEEcCCC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIV---TT-TPTIGFNVEAVEYK-----------------NKSFCVWDVGGQ   71 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~---~~-~~~~~~~~~~~~~~-----------------~~~~~i~d~~g~   71 (181)
                      .+...++|+++|.|+||||||+|++.+...+   .+ ..|+..+...+...                 ...+.+.|+||.
T Consensus         6 ~~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGL   85 (296)
T d1ni3a1           6 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   85 (296)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccc
Confidence            4567899999999999999999999975422   11 12222233334432                 357899999982


Q ss_pred             h----h---hHHHHHhhccCCCEEEEEEECCC
Q 030233           72 N----K---IRALWRHYFRDTLGLTFVVDSSD   96 (181)
Q Consensus        72 ~----~---~~~~~~~~~~~~d~ii~v~d~~~   96 (181)
                      .    +   ........++.+|++++|+|+.+
T Consensus        86 v~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          86 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            2    1   22345566788999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.03  E-value=9.3e-11  Score=81.97  Aligned_cols=58  Identities=21%  Similarity=0.318  Sum_probs=39.0

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEE-CCeEEEEEEcCC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEY-KNKSFCVWDVGG   70 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~~g   70 (181)
                      .....++++++|.|+||||||+|++.+......++.+|++.....+ .+..+.++||||
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPG  166 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPG  166 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeEEecCCC
Confidence            4557899999999999999999999999887888888877664333 345689999999

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.93  E-value=2.2e-09  Score=75.04  Aligned_cols=75  Identities=24%  Similarity=0.289  Sum_probs=52.5

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcCCc-------ccccCccceeEEEEEEC-----------------CeEEEEEEcCCCh
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLGEI-------VTTTPTIGFNVEAVEYK-----------------NKSFCVWDVGGQN   72 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~~~-------~~~~~~~~~~~~~~~~~-----------------~~~~~i~d~~g~~   72 (181)
                      .++|+++|-|+||||||+|++.+...       .+..|..|+    +...                 ...+.+.|+||--
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv----v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi   77 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV----VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLV   77 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE----EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE----EecccHhHHHHHHhcCCCceeeeeEEEEEccccC
Confidence            47999999999999999999987652       222344443    4332                 2468899999943


Q ss_pred             hhHH-------HHHhhccCCCEEEEEEECC
Q 030233           73 KIRA-------LWRHYFRDTLGLTFVVDSS   95 (181)
Q Consensus        73 ~~~~-------~~~~~~~~~d~ii~v~d~~   95 (181)
                      ...+       .....++.+|++++|+|+.
T Consensus        78 ~ga~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          78 AGASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             TTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCcccCCCccHHHHHHHHhccceEEEeecc
Confidence            2222       2445567899999999863

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=3.1e-08  Score=68.92  Aligned_cols=92  Identities=17%  Similarity=0.137  Sum_probs=64.6

Q ss_pred             HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEE
Q 030233           75 RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWS  154 (181)
Q Consensus        75 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  154 (181)
                      .......++.+|+++.|+|+.+|.+..  ...++.+++     +.|.|+|+||+|+.+....+...+.+.     .....
T Consensus         6 ~r~i~~~i~~~DvIl~V~DaR~P~ss~--~~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~-----~~~~~   73 (273)
T d1puja_           6 RREVTEKLKLIDIVYELVDARIPMSSR--NPMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIR   73 (273)
T ss_dssp             HHHHHHHGGGCSEEEEEEETTSTTTTS--CHHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCC
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCCC--CHHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHH-----hcCCc
Confidence            344566788999999999998775433  234455543     579999999999987444444444332     23346


Q ss_pred             EEEeeccCCCCHHHHHHHHHhhhh
Q 030233          155 IQSCSAISGQGLYEGLDWLSNNIS  178 (181)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~i~~~~~  178 (181)
                      ++.+|+.++.+...+.+.+.+.+.
T Consensus        74 ~i~isa~~~~~~~~~~~~~~~~l~   97 (273)
T d1puja_          74 SLSINSVNGQGLNQIVPASKEILQ   97 (273)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             cceeecccCCCccccchhhhhhhh
Confidence            899999999999888877765543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=7.7e-08  Score=64.46  Aligned_cols=88  Identities=20%  Similarity=0.177  Sum_probs=60.2

Q ss_pred             ccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           82 FRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      ..+.|.+++|+++.+|+ +...+..++.....    .+++.++|+||+|+.++...+.+.......   ....+++.+||
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~---~~~~~v~~vSa   80 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIY---SGLYPIVKTSA   80 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---TTTSCEEECCT
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhccc---ccceeEEEecc
Confidence            35689999999988764 44445555544433    489999999999998643333333322211   22346899999


Q ss_pred             cCCCCHHHHHHHHHhh
Q 030233          161 ISGQGLYEGLDWLSNN  176 (181)
Q Consensus       161 ~~~~~i~~l~~~i~~~  176 (181)
                      ++++|++++.+.+..+
T Consensus        81 ~~~~g~~~L~~~l~~k   96 (225)
T d1u0la2          81 KTGMGIEELKEYLKGK   96 (225)
T ss_dssp             TTCTTHHHHHHHHSSS
T ss_pred             ccchhHhhHHHHhcCC
Confidence            9999999999887543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.41  E-value=1.3e-06  Score=56.22  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +||+++|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=1.2e-07  Score=63.44  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -..+++|.+|+|||||+|++.+..
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchh
Confidence            467999999999999999998765

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=4.5e-06  Score=55.94  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -.++.|--|+|||||+++++...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            46888999999999999998743

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.24  E-value=7e-08  Score=64.90  Aligned_cols=88  Identities=9%  Similarity=0.049  Sum_probs=58.7

Q ss_pred             ccCCCEEEEEEECCCcc-cHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeec
Q 030233           82 FRDTLGLTFVVDSSDRE-RISEARNELHQILSDNELSNAALLVFANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSA  160 (181)
Q Consensus        82 ~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (181)
                      ..+.|.+++|+++.+|+ +...+..++.....    .+++.++|+||+|+.+....++...... ..+...+++++.+|+
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~-~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYA-EDYRNIGYDVYLTSS   82 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHH-HHHHHHTCCEEECCH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHH-HHHhhccccceeeec
Confidence            35689999999998764 44555555544433    4889999999999986443332222111 011233567999999


Q ss_pred             cCCCCHHHHHHHHH
Q 030233          161 ISGQGLYEGLDWLS  174 (181)
Q Consensus       161 ~~~~~i~~l~~~i~  174 (181)
                      .++.|++++.+++.
T Consensus        83 ~~~~gl~~L~~~l~   96 (231)
T d1t9ha2          83 KDQDSLADIIPHFQ   96 (231)
T ss_dssp             HHHTTCTTTGGGGT
T ss_pred             CChhHHHHHHHhhc
Confidence            99999998877654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=4.3e-07  Score=60.43  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+.++..|+++|++|+||||.+-+++.
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            345667789999999999999877763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.15  E-value=1.8e-07  Score=62.88  Aligned_cols=24  Identities=17%  Similarity=0.275  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -..+++|.+|+|||||+|++.+..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            356799999999999999999865

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.14  E-value=2.5e-06  Score=56.43  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-----------ccc-----------cCccceeEEEEE----------------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-----------VTT-----------TPTIGFNVEAVE----------------   57 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-----------~~~-----------~~~~~~~~~~~~----------------   57 (181)
                      ++--|+++|++||||||.+-+++..-.           ..+           ....++......                
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~   84 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM   84 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence            345689999999999999877753110           000           011122211110                


Q ss_pred             -ECCeEEEEEEcCCChhhHHH----HHhh---c-----cCCCEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEE
Q 030233           58 -YKNKSFCVWDVGGQNKIRAL----WRHY---F-----RDTLGLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLV  123 (181)
Q Consensus        58 -~~~~~~~i~d~~g~~~~~~~----~~~~---~-----~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piil  123 (181)
                       ..+..+.++||+|...+...    ....   .     ...+-+++|+|++.. +........+..+ ..       -=+
T Consensus        85 ~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-~~-------~~l  156 (207)
T d1okkd2          85 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-GL-------TGV  156 (207)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-CC-------SEE
T ss_pred             HHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-CC-------ceE
Confidence             13568899999995432211    1111   1     245788999999643 4444454444443 21       156


Q ss_pred             EEeCCCCCC
Q 030233          124 FANKQDLPN  132 (181)
Q Consensus       124 v~nK~D~~~  132 (181)
                      +++|.|...
T Consensus       157 I~TKlDet~  165 (207)
T d1okkd2         157 IVTKLDGTA  165 (207)
T ss_dssp             EEECTTSSC
T ss_pred             EEeccCCCC
Confidence            899999754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=3.5e-06  Score=55.78  Aligned_cols=136  Identities=18%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcCCc-----------ccc-----------cCccceeEEEEE----------------
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLGEI-----------VTT-----------TPTIGFNVEAVE----------------   57 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~~~-----------~~~-----------~~~~~~~~~~~~----------------   57 (181)
                      .+.-|+++|++|+||||.+-+++..-.           ..+           ....++......                
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a   87 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA   87 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHH
Confidence            345688999999999999988863110           000           011222221110                


Q ss_pred             -ECCeEEEEEEcCCChhhHHH-------HHhhcc-----CCCEEEEEEECCC-cccHHHHHHHHHHHHcCCCCCCCeEEE
Q 030233           58 -YKNKSFCVWDVGGQNKIRAL-------WRHYFR-----DTLGLTFVVDSSD-RERISEARNELHQILSDNELSNAALLV  123 (181)
Q Consensus        58 -~~~~~~~i~d~~g~~~~~~~-------~~~~~~-----~~d~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piil  123 (181)
                       ..+..+.++||+|.......       .....+     ..+-+++|+|+.. .+........+..+        .+-=+
T Consensus        88 ~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~--------~~~~l  159 (211)
T d2qy9a2          88 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV--------GLTGI  159 (211)
T ss_dssp             HHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS--------CCCEE
T ss_pred             HHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc--------CCceE
Confidence             13467899999995433221       111222     2468899999863 23333333333322        12357


Q ss_pred             EEeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233          124 FANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       124 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      +++|.|...... ..+.-.      ...+.++..++  +|+++++
T Consensus       160 IlTKlDe~~~~G-~~l~~~------~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         160 TLTKLDGTAKGG-VIFSVA------DQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             EEECCTTCTTTT-HHHHHH------HHHCCCEEEEE--CSSSGGG
T ss_pred             EEeecCCCCCcc-HHHHHH------HHHCCCEEEEe--CCCCccc
Confidence            899999754221 111111      12334566666  7777754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.10  E-value=1.8e-06  Score=57.24  Aligned_cols=106  Identities=20%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             EEEEcCCCCChHHHHHhhhcC------C-----ccc-----------ccCccceeEEEEE-----------------ECC
Q 030233           20 LLMVGLDASGKTTILYKMKLG------E-----IVT-----------TTPTIGFNVEAVE-----------------YKN   60 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~------~-----~~~-----------~~~~~~~~~~~~~-----------------~~~   60 (181)
                      ++++|++||||||.+-.++..      .     ...           +....++......                 ..+
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEA   92 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhhcc
Confidence            688999999999999888631      1     000           0111222222211                 144


Q ss_pred             eEEEEEEcCCChhhHH----HHHhh--ccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEEEEEeCCCCCC
Q 030233           61 KSFCVWDVGGQNKIRA----LWRHY--FRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALLVFANKQDLPN  132 (181)
Q Consensus        61 ~~~~i~d~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  132 (181)
                      ..+.++||+|......    ....+  ....+-+++|.|++....-......+...+..       -=++++|.|...
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~-------~~~I~TKlDe~~  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV-------TGLVLTKLDGDA  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCC-------CEEEEECGGGCS
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCC-------CeeEEeecCccc
Confidence            6789999999433221    11111  23568899999986543222222222222221       137889999643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.01  E-value=7.4e-06  Score=54.26  Aligned_cols=138  Identities=17%  Similarity=0.133  Sum_probs=67.8

Q ss_pred             CCC-ccEEEEEcCCCCChHHHHHhhhcCCccc----------------------ccCccceeEEEE--------------
Q 030233           14 PQC-RIKLLMVGLDASGKTTILYKMKLGEIVT----------------------TTPTIGFNVEAV--------------   56 (181)
Q Consensus        14 ~~~-~~~i~~~G~~~~GKssl~~~~~~~~~~~----------------------~~~~~~~~~~~~--------------   56 (181)
                      |.+ +.-|+++|++|+||||.+-+++..-...                      +...+++.....              
T Consensus         8 ~~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~   87 (211)
T d1j8yf2           8 PDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV   87 (211)
T ss_dssp             CSSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHH
Confidence            444 4557889999999999988776421000                      000111111100              


Q ss_pred             ---EECCeEEEEEEcCCChhhH------HHHHhh--ccCCCEEEEEEECCCc-ccHHHHHHHHHHHHcCCCCCCCeEEEE
Q 030233           57 ---EYKNKSFCVWDVGGQNKIR------ALWRHY--FRDTLGLTFVVDSSDR-ERISEARNELHQILSDNELSNAALLVF  124 (181)
Q Consensus        57 ---~~~~~~~~i~d~~g~~~~~------~~~~~~--~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv  124 (181)
                         ...+..+.++||+|...+.      ......  .-..+-+++|+|++.. +........+..       .++ -=++
T Consensus        88 ~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~-------~~~-~~lI  159 (211)
T d1j8yf2          88 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA-------SKI-GTII  159 (211)
T ss_dssp             HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH-------CTT-EEEE
T ss_pred             HHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc-------cCc-ceEE
Confidence               0145689999999953221      111111  1245788999998643 223322222221       122 2366


Q ss_pred             EeCCCCCCCCCHHHHHhhhCccccCCccEEEEEeeccCCCCHHH
Q 030233          125 ANKQDLPNVMPTAEVADKLELYSLGQRRWSIQSCSAISGQGLYE  168 (181)
Q Consensus       125 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (181)
                      ++|.|....  .-.+....     ...+.++..++  +|+++++
T Consensus       160 ~TKlDet~~--~G~~l~~~-----~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         160 ITKMDGTAK--GGGALSAV-----AATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             EECTTSCSC--HHHHHHHH-----HTTTCCEEEEE--CSSSTTC
T ss_pred             EecccCCCc--ccHHHHHH-----HHHCcCEEEEe--CCCCccc
Confidence            999997542  22222222     23444666666  6777754

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.86  E-value=5.1e-06  Score=53.09  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=23.1

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++.++|++.|++||||||+.+.|+..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            46789999999999999999999753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.83  E-value=3.9e-06  Score=53.49  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -++|+++|++||||||+.+.++.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999965

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.82  E-value=3.7e-06  Score=54.26  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -+|++.|++|||||||+++|+..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=0.0001  Score=50.44  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=27.9

Q ss_pred             HHHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            5 ISRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +.++.+-+....+-+++++|++|+|||+++..++..
T Consensus        27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHH
Confidence            344555555566778999999999999999888754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.78  E-value=6.9e-06  Score=51.32  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |++.|++||||||++++++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998643

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.75  E-value=9.6e-06  Score=52.89  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=24.4

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .|.+-++|+++|+|||||||+...++..
T Consensus         2 ~~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           2 ASARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CSSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            3567789999999999999999999754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=7e-06  Score=52.16  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -++++|.+|||||||+++++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999985

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.73  E-value=1e-05  Score=52.65  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.7

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.++|+++|+|||||||+...++.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999999974

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.73  E-value=5e-05  Score=51.51  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -.|++.|++|+|||++++.+++.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            45999999999999999999753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.72  E-value=7.6e-06  Score=53.25  Aligned_cols=25  Identities=32%  Similarity=0.316  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++++|+++|++||||||++..++..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999998653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.70  E-value=1e-05  Score=52.16  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++|+++|+|||||||++..++.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.69  E-value=1.9e-05  Score=51.27  Aligned_cols=29  Identities=31%  Similarity=0.352  Sum_probs=25.0

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...+..++-|++.|++|||||||++++..
T Consensus        16 ~~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             TSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             hccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45567788899999999999999999964

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=5.4e-05  Score=52.22  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=39.7

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCCc--cc----ccCccceeEEEEEE---CCeEEEEEEcCCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGEI--VT----TTPTIGFNVEAVEY---KNKSFCVWDVGGQ   71 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~~--~~----~~~~~~~~~~~~~~---~~~~~~i~d~~g~   71 (181)
                      ..-.-|.++|+.++|||+|+|.+++...  ..    ...|.|+-......   .+..+.++||.|.
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~   95 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL   95 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccc
Confidence            3345699999999999999999998662  21    13455543322222   5568999999994

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.67  E-value=1.5e-05  Score=52.05  Aligned_cols=25  Identities=20%  Similarity=0.114  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .++..|+++|+|||||||++.+++.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999975

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.65  E-value=1.4e-05  Score=51.68  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++|+++|+|||||||++..|+..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=1.5e-05  Score=51.38  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++|+++|+|||||||+...++..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=1.8e-05  Score=50.93  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++|+++|+|||||||....++.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=2.2e-05  Score=50.58  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .++|+++|++||||||+...++.
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999975

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.56  E-value=3.3e-05  Score=52.79  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .-|++.|+||+||||++..+++.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999999764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.56  E-value=2e-05  Score=50.07  Aligned_cols=21  Identities=19%  Similarity=0.339  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |++.|++||||||++++++..
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.1e-05  Score=50.42  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++.|+++|+|||||||.+.+++.
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=4.3e-05  Score=48.94  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..++.-|+++|.+||||||++.+++.
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34566799999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=2.7e-05  Score=48.87  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .|.++|++||||||+...++..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.48  E-value=3.8e-05  Score=48.97  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+.+.|.++|.+||||||+...+..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4557899999999999999988864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=2.7e-05  Score=49.38  Aligned_cols=20  Identities=40%  Similarity=0.471  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChHHHHHhhhc
Q 030233           20 LLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.|+|.+|||||||+++++.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            47999999999999999974

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.43  E-value=4.3e-05  Score=50.74  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.6

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhc
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      |+++.|++-|++||||||....++.
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999999999975

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=4.9e-05  Score=49.51  Aligned_cols=28  Identities=21%  Similarity=0.198  Sum_probs=23.3

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .|.+...|+++|+|||||||++..++..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3555667999999999999999999763

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=4.3e-05  Score=50.20  Aligned_cols=23  Identities=43%  Similarity=0.507  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.-|+++|.|||||||++++++.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999999974

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=3.2e-05  Score=49.10  Aligned_cols=22  Identities=41%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++|+++|.+||||||+.+.++.
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.42  E-value=3.8e-05  Score=50.44  Aligned_cols=25  Identities=24%  Similarity=0.163  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      .++++|++|+|||||++.+++--.+
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhccccc
Confidence            4789999999999999999875433

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=4.1e-05  Score=51.72  Aligned_cols=24  Identities=25%  Similarity=0.176  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|+|||||++.+++-.
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            468999999999999999998754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=9.5e-05  Score=48.06  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             HHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            6 SRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         6 ~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .++..-+..+.+-+++++|++|+|||+++..++..
T Consensus        32 ~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHH
Confidence            34444555566778999999999999999888753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=4.4e-05  Score=51.13  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -++++|++|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57999999999999999998743

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.9e-05  Score=49.11  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|.+.|++|+|||||+..++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999974

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.38  E-value=4.5e-05  Score=51.05  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      .++++|++|||||||++.+++-..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCcchhhHhccCCCC
Confidence            579999999999999998887543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.36  E-value=5.3e-05  Score=51.18  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|+|||||++.+++-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999998743

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.35  E-value=5.4e-05  Score=50.61  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +...+++.|++|+||||++..++..
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999988753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.35  E-value=5.3e-05  Score=51.56  Aligned_cols=24  Identities=29%  Similarity=0.245  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|||||||++.+++-.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhccc
Confidence            368999999999999999998744

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.32  E-value=5.9e-05  Score=50.69  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -++++|++|+|||||++.++|-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            45799999999999999998754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=4.8e-05  Score=49.00  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |+++|++|+||+||+++++..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.32  E-value=6.5e-05  Score=47.73  Aligned_cols=22  Identities=36%  Similarity=0.348  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -|++.|++||||||+.+.+...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=6.7e-05  Score=50.97  Aligned_cols=24  Identities=25%  Similarity=0.198  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|||||||++.+++-.
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhccc
Confidence            378999999999999999998744

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.29  E-value=6.2e-05  Score=47.54  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +|.++|++||||||+...++.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.29  E-value=6.6e-05  Score=50.46  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -++++|++|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47999999999999999998754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.29  E-value=6.9e-05  Score=48.02  Aligned_cols=21  Identities=19%  Similarity=0.139  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -|++.|++||||||+++.+..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998853

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=7.2e-05  Score=51.66  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|+|||||++.++|--
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            368999999999999999998754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=8.3e-05  Score=49.07  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++-|++.|++|||||||.+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999998843

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=7.4e-05  Score=48.36  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |+++|++|||||||+++++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.25  E-value=7.5e-05  Score=50.25  Aligned_cols=25  Identities=28%  Similarity=0.264  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      .++++|++|+|||||++.+++-..+
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~p   55 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEEP   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCCC
Confidence            5799999999999999999876533

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00012  Score=46.33  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..-++++|++||||||+.+.++.
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34467899999999999999865

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=7.4e-05  Score=50.29  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            57999999999999999998754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00011  Score=48.96  Aligned_cols=32  Identities=19%  Similarity=0.157  Sum_probs=23.5

Q ss_pred             HhhhhCCCCccEEEEEcCCCCChHHHHHhhhc
Q 030233            8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus         8 ~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.++....+..++++.|++|+||||+++.++.
T Consensus        27 L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          27 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHcCCCCeEEEECCCCCCchhhHHHHHH
Confidence            33333333445699999999999999988864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.20  E-value=8.9e-05  Score=49.98  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      -++++|++|+|||||++.++|-..
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            479999999999999999988643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=9.2e-05  Score=47.64  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      |+++|++||||||+++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.20  E-value=0.00021  Score=50.31  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+|++.|++||||||+++.+++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.20  E-value=7.5e-05  Score=50.77  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      =.++++|++|||||||++.+.+-.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            478999999999999999888643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.19  E-value=5.4e-05  Score=50.57  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      -++++|++|+|||||++.++|-..
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            479999999999999999988543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00018  Score=48.03  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .+...+++.|++|+||||++..++..
T Consensus        31 ~~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          31 ANLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCChHHHHHHHHHH
Confidence            33456899999999999999999753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.16  E-value=0.00014  Score=46.04  Aligned_cols=22  Identities=18%  Similarity=0.304  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -|++.|++||||||+.+.++..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677799999999999999764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=9.9e-05  Score=49.55  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...+++.|+||+||||+++.+++.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999999753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.00012  Score=49.22  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      -++++|+.|+|||||++.++|-..+
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4789999999999999999886543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=6.9e-05  Score=50.26  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -++++|++|+|||||++.++|-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4799999999999999999874

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=0.00022  Score=51.37  Aligned_cols=33  Identities=18%  Similarity=0.338  Sum_probs=24.2

Q ss_pred             HHhhhhCCCCccEEEEEcCCCCChHHHHHhhhc
Q 030233            7 RLAKRFFPQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+.+-+....+-+++++|++|||||+++..++.
T Consensus        33 ~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          33 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHH
Confidence            344444445566789999999999999876654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.15  E-value=0.00012  Score=46.59  Aligned_cols=20  Identities=30%  Similarity=0.446  Sum_probs=17.9

Q ss_pred             EEEEcCCCCChHHHHHhhhc
Q 030233           20 LLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~   39 (181)
                      |.++|++||||||+.+.++.
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999998864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00014  Score=48.40  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +...+++.|++|+||||++..++..
T Consensus        34 ~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          34 KLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHH
Confidence            3346899999999999999999753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.13  E-value=0.00014  Score=47.20  Aligned_cols=23  Identities=30%  Similarity=0.236  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .-|.++|+|||||||++.+++..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999999754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00012  Score=47.46  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHHhhhc
Q 030233           20 LLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~   39 (181)
                      |+++|++|||||||+++++.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00012  Score=49.05  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhcC
Q 030233           17 RIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...+++.|+||+||||+++.++..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            346899999999999999998753

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.12  E-value=0.00016  Score=47.00  Aligned_cols=27  Identities=30%  Similarity=0.238  Sum_probs=23.3

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..+++-|++-|..||||||+++.+...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            456778999999999999999999753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00013  Score=47.99  Aligned_cols=22  Identities=9%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -|+++||+|||||||+++++..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3689999999999999999764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=5.9e-05  Score=48.80  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +...|.+.|.+||||||+.+.+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999964

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.10  E-value=0.00013  Score=49.59  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .++++|++|||||||++.++|-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57999999999999999998754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.09  E-value=0.00017  Score=47.47  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=26.5

Q ss_pred             HhhhhCCCCccEEEEEcCCCCChHHHHHhhhc
Q 030233            8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus         8 ~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ....+..++.+-|.+.|.||+|||||.+.+..
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34456677888999999999999999998863

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.03  E-value=0.0002  Score=48.68  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~   42 (181)
                      -++++|++|+|||||++.++|-..
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHHCCCc
Confidence            469999999999999999998643

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.01  E-value=7.1e-05  Score=50.39  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIV   43 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~   43 (181)
                      .++++|++|||||||++.+.+-..+
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHHcCcCC
Confidence            5899999999999999999885533

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00024  Score=45.93  Aligned_cols=25  Identities=24%  Similarity=0.187  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .++-|++.|.+||||||+++.|...
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC
Confidence            4678999999999999999988543

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.99  E-value=0.00017  Score=50.47  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -.++++||||||||.|+++++..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            35899999999999999999753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00038  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      -.+++.|++|+|||++++.+++.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999853

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.98  E-value=0.0002  Score=45.91  Aligned_cols=21  Identities=38%  Similarity=0.675  Sum_probs=17.6

Q ss_pred             EE-EEEcCCCCChHHHHHhhhc
Q 030233           19 KL-LMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i-~~~G~~~~GKssl~~~~~~   39 (181)
                      || ++.|.+||||||+++.++.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            54 5679999999999998863

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00038  Score=48.50  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=21.9

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      .+.++-|+|.|++|||||||.+.+.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            4567899999999999999988875

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00026  Score=47.70  Aligned_cols=23  Identities=22%  Similarity=0.148  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..+++.|++|+||||++..+++.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.00049  Score=46.22  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..+++.|++|+||||++..++.
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00063  Score=46.20  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      --+++.|+||+|||++++.++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            35899999999999999999864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.78  E-value=0.00043  Score=47.15  Aligned_cols=21  Identities=24%  Similarity=0.052  Sum_probs=17.5

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +++.|+||+|||++++.++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.75  E-value=0.00042  Score=46.90  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-.+++.|++|+|||++++.++.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00041  Score=47.13  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.+++.|+||+|||++++.++.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3489999999999999999985

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.0059  Score=37.99  Aligned_cols=27  Identities=30%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      +...-|++-|+=|+|||||++.++..-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            445678999999999999999998643

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.66  E-value=0.00045  Score=46.86  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.+++.|++|+|||||+.+++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            4578999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.66  E-value=0.00039  Score=50.99  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.8

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +-+|+++||+|||||-|+++++.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999975

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0005  Score=45.22  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +-|++.|+|||||+|....++.+
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35788899999999999999753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.00096  Score=45.47  Aligned_cols=24  Identities=21%  Similarity=0.178  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -.|++.|++|+|||+|++.+++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            459999999999999999998653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.00089  Score=46.07  Aligned_cols=25  Identities=20%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhh
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      ..+++-|++.|++|||||||...+.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3457889999999999999987764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.29  E-value=0.0013  Score=42.80  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -|+|-|..||||||+++.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999988863

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0015  Score=42.76  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=24.0

Q ss_pred             HHHhhhhCCCCcc-EEEEEcCCCCChHHHHHhhhc
Q 030233            6 SRLAKRFFPQCRI-KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus         6 ~~~~~~~~~~~~~-~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .++.+.....+-. -+++.|++|+||||++..++.
T Consensus        12 ~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             HHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence            3344444444434 489999999999999997764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.25  E-value=0.00069  Score=46.64  Aligned_cols=24  Identities=13%  Similarity=0.170  Sum_probs=17.3

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +.+-|+|.|++||||||+.+++..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            455699999999999999988743

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0018  Score=42.37  Aligned_cols=23  Identities=22%  Similarity=0.124  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +-|++.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            56899999999999999988643

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.10  E-value=0.0019  Score=42.14  Aligned_cols=22  Identities=32%  Similarity=0.158  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +-|++.|..||||||+++.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6689999999999999988753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0017  Score=42.23  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=24.0

Q ss_pred             HHHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcCC
Q 030233            6 SRLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus         6 ~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      ..+....++..+ -+.+.|++|+|||+|+..++.+.
T Consensus        13 D~ll~GGi~~G~-v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          13 DKLLQGGIETGS-ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             HHHTTTSEETTS-EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHhhcCCCcCCE-EEEEEeCCCCCHHHHHHHHHHHH
Confidence            333333343333 36899999999999998887543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.07  E-value=0.002  Score=45.88  Aligned_cols=26  Identities=31%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++ --+++.||||+|||+|+..+++
T Consensus       151 ~~~~-~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         151 IPKK-RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CTTC-CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCc-CeEEEECCCCCCHHHHHHHHHH
Confidence            3443 3689999999999999999975

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.07  E-value=0.00078  Score=47.39  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.+++.|++|+|||++++++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4699999999999999999864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0022  Score=42.83  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .+++.|++|+|||+++..++.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999988754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0027  Score=44.33  Aligned_cols=21  Identities=24%  Similarity=0.427  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .++++|++|+|||.|+..++.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999999864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0021  Score=41.93  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHhhhc
Q 030233           20 LLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~   39 (181)
                      |++-|..||||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.94  E-value=0.0023  Score=40.62  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .=|++.|++|+||||+.-.+....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            348999999999999998887653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.002  Score=42.77  Aligned_cols=29  Identities=10%  Similarity=0.022  Sum_probs=21.8

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..+|..+ -+.+.|++|+|||+|+..++..
T Consensus        29 GGi~~G~-~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          29 GGVETGS-ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEESSS-EEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCCcCCe-EEEEEcCCCCCHHHHHHHHHHH
Confidence            3344443 4699999999999999988754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.90  E-value=0.0021  Score=42.91  Aligned_cols=31  Identities=16%  Similarity=-0.008  Sum_probs=22.6

Q ss_pred             hhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            9 AKRFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         9 ~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ....+|..+ -+++.|++|+|||+|.-.++.+
T Consensus        29 l~GGlp~G~-~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          29 LGGGIETQA-ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             HTSSEESSE-EEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCccCCE-EEEEEcCCCCCHHHHHHHHHHH
Confidence            333344443 3699999999999999888654

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0021  Score=42.66  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhcC
Q 030233           19 KLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .|++-|+.||||||+++.+...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.86  E-value=0.0026  Score=40.41  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .=+++.|++|+||||+...+....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            348999999999999998887653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.80  E-value=0.0023  Score=45.59  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=20.2

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .-+++++||+|||||-+.++++.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            44699999999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.80  E-value=0.0026  Score=44.39  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=17.9

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +++.|+||+|||.+++.+++.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999999763

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.76  E-value=0.0054  Score=41.87  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ...-|++.|.+|+|||||+..+++.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3446889999999999999988654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.65  E-value=0.0025  Score=44.73  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=23.5

Q ss_pred             CCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           14 PQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        14 ~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      .|..++|.|=|.-|+||||+++.+...
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999754

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.62  E-value=0.0033  Score=41.75  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=23.5

Q ss_pred             HHhhhhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233            7 RLAKRFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus         7 ~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++....+|.. --+++.|+||+|||+|+.+++.+
T Consensus        17 ~~l~GGi~~g-sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          17 EMCGGGFFKD-SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             HHTTSSEESS-CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HhhcCCCcCC-eEEEEEeCCCCCHHHHHHHHHHH
Confidence            3333334444 34689999999999999888754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0033  Score=41.09  Aligned_cols=21  Identities=29%  Similarity=0.422  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      =|++-|..||||||++..+..
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999998887753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.013  Score=39.72  Aligned_cols=75  Identities=15%  Similarity=0.047  Sum_probs=43.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      -+.+.|++++|||+|+-.++.....               .+..+.++||-+.-.-.... ..--+.|-++ ++.   +.
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~q~---------------~g~~~vyidtE~~~~~~~a~-~~Gvd~d~v~-~~~---~~  115 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAAQR---------------EGKTCAFIDAEHALDPIYAR-KLGVDIDNLL-CSQ---PD  115 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHHHH-HTTCCGGGCE-EEC---CS
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHc---------------CCCEEEEEccccccCHHHHH-HhCCCHHHEE-Eec---CC
Confidence            3589999999999998877654321               23345678888743322111 1112234443 333   34


Q ss_pred             cHHHHHHHHHHHHcC
Q 030233           99 RISEARNELHQILSD  113 (181)
Q Consensus        99 s~~~~~~~~~~~~~~  113 (181)
                      +.++..+++..+.+.
T Consensus       116 ~~E~~~~~i~~l~~~  130 (263)
T d1u94a1         116 TGEQALEICDALARS  130 (263)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc
Confidence            566666666666554

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.55  E-value=0.0038  Score=39.38  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcCC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      .=|++.|++|+||||+.-.+....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999998877653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0067  Score=40.31  Aligned_cols=29  Identities=14%  Similarity=-0.020  Sum_probs=22.2

Q ss_pred             hhCCCCccEEEEEcCCCCChHHHHHhhhcC
Q 030233           11 RFFPQCRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        11 ~~~~~~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..+|... -+.+.|++|+|||+|...++..
T Consensus        32 GGip~G~-~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          32 GGIESMA-ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSBCSSE-EEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCcCCE-EEEEECCCCCCHHHHHHHHHHH
Confidence            3444443 4699999999999999988753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.45  E-value=0.004  Score=41.25  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCC
Q 030233           19 KLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      -+++.|++|+|||+|+..++.+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46899999999999999987543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0047  Score=40.96  Aligned_cols=21  Identities=29%  Similarity=0.313  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -|++=|..||||||+++.+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999999975

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.22  E-value=0.0086  Score=43.13  Aligned_cols=23  Identities=35%  Similarity=0.369  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChHHHHHhhhcC
Q 030233           18 IKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      =-|++.|+.||||||.+..++..
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            34899999999999999998763

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.0039  Score=42.96  Aligned_cols=18  Identities=33%  Similarity=0.565  Sum_probs=16.2

Q ss_pred             EEEEcCCCCChHHHHHhh
Q 030233           20 LLMVGLDASGKTTILYKM   37 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~   37 (181)
                      -+++|+.|+||||++.++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            379999999999999877

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.00076  Score=43.49  Aligned_cols=19  Identities=21%  Similarity=0.326  Sum_probs=16.6

Q ss_pred             EEEEcCCCCChHHHHHhhh
Q 030233           20 LLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~   38 (181)
                      .+++|+.|+|||||+.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3678999999999999884

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.15  E-value=0.031  Score=37.82  Aligned_cols=75  Identities=15%  Similarity=0.045  Sum_probs=43.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcc
Q 030233           19 KLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRE   98 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~   98 (181)
                      -+-+.|++++|||+|+-.++.....               .+..+.++||-+.-.-.. ...+--+.|-++ ++.   +.
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aqk---------------~g~~v~yiDtE~~~~~~~-a~~~Gvd~d~i~-~~~---~~  118 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQK---------------AGGTCAFIDAEHALDPVY-ARALGVNTDELL-VSQ---PD  118 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH---------------TTCCEEEEESSCCCCHHH-HHHTTCCGGGCE-EEC---CS
T ss_pred             EEEEecCCccchHHHHHHHHHHHHh---------------CCCEEEEEECCccCCHHH-HHHhCCCchhEE-EEc---CC
Confidence            4589999999999999888654211               233457889887433221 111212334443 333   34


Q ss_pred             cHHHHHHHHHHHHcC
Q 030233           99 RISEARNELHQILSD  113 (181)
Q Consensus        99 s~~~~~~~~~~~~~~  113 (181)
                      +.++..+.++.++..
T Consensus       119 ~~E~~~~~~~~l~~~  133 (268)
T d1xp8a1         119 NGEQALEIMELLVRS  133 (268)
T ss_dssp             SHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            566666677776654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.13  E-value=0.0067  Score=42.53  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=21.8

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ..++|.|=|.-|+||||+++.+...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            3578999999999999999999753

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.11  E-value=0.036  Score=37.50  Aligned_cols=81  Identities=17%  Similarity=0.115  Sum_probs=45.6

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhhcCCcccccCccceeEEEEEECCeEEEEEEcCCChhhHHHHHhhccCCCEEEEE
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMKLGEIVTTTPTIGFNVEAVEYKNKSFCVWDVGGQNKIRALWRHYFRDTLGLTFV   91 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v   91 (181)
                      .+|...+ +.+.|++++|||+|+-.++.....               .+..+.++||.|.-.-......- -+.+-++ +
T Consensus        56 G~~~g~i-~e~~G~~~~GKT~l~l~~~~~~q~---------------~g~~~vyIDtE~~~~~e~a~~~G-vD~d~il-~  117 (269)
T d1mo6a1          56 GLPRGRV-IEIYGPESSGKTTVALHAVANAQA---------------AGGVAAFIDAEHALDPDYAKKLG-VDTDSLL-V  117 (269)
T ss_dssp             SBCSSSE-EEEECSSSSSHHHHHHHHHHHHHH---------------TTCEEEEEESSCCCCHHHHHHHT-CCGGGCE-E
T ss_pred             Cccccee-EEEecCCCcHHHHHHHHHHHHHhc---------------CCCEEEEEECCccCCHHHHHHhC-CCHHHeE-E
Confidence            3444444 589999999999998777642111               23456788999843222111112 2334333 3


Q ss_pred             EECCCcccHHHHHHHHHHHHcC
Q 030233           92 VDSSDRERISEARNELHQILSD  113 (181)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~  113 (181)
                      +..   .+.++..+.++.++..
T Consensus       118 ~~~---~~~E~~~~~~~~l~~~  136 (269)
T d1mo6a1         118 SQP---DTGEQALEIADMLIRS  136 (269)
T ss_dssp             ECC---SSHHHHHHHHHHHHHT
T ss_pred             ecC---CCHHHHHHHHHHHHhc
Confidence            443   4566666666666554

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.09  E-value=0.0059  Score=40.02  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +.+.|++|+|||-|++.++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.06  E-value=0.0045  Score=40.07  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=20.8

Q ss_pred             CCCCccEEEEEcCCCCChHHHHHhhhc
Q 030233           13 FPQCRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        13 ~~~~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      .|++ =-+++.|++++|||.|+.+++.
T Consensus        50 ~PKk-n~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          50 TPKK-NCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CTTC-SEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCc-eEEEEECCCCccHHHHHHHHHH
Confidence            3444 4478999999999999988864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.87  E-value=0.0076  Score=39.51  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=19.4

Q ss_pred             hCCCCccEEEEEcCCCCChHHHHHhhh
Q 030233           12 FFPQCRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        12 ~~~~~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      .+|.. --+.+.|++|+|||+|+..++
T Consensus        22 Gi~~G-~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          22 GLPIG-RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEETT-SEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcCC-eEEEEEeCCCCCHHHHHHHHH
Confidence            34433 346888999999999987765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.86  E-value=0.0079  Score=39.36  Aligned_cols=21  Identities=38%  Similarity=0.445  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      =|++-|..||||||+++.+..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999988853

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.83  E-value=0.008  Score=40.72  Aligned_cols=20  Identities=20%  Similarity=0.363  Sum_probs=17.4

Q ss_pred             EEEEcCCCCChHHHHHhhhc
Q 030233           20 LLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~   39 (181)
                      +++.|++|+|||+|+..++.
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            68999999999999877763

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.76  E-value=0.0077  Score=42.14  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -++|.|=|.-|+||||+++.+..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            35799999999999999999964

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.75  E-value=0.0091  Score=39.57  Aligned_cols=21  Identities=24%  Similarity=0.294  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -|++.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.74  E-value=0.013  Score=40.67  Aligned_cols=26  Identities=27%  Similarity=0.456  Sum_probs=20.8

Q ss_pred             CCCcc-EEEEEcCCCCChHHHHHhhhc
Q 030233           14 PQCRI-KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        14 ~~~~~-~i~~~G~~~~GKssl~~~~~~   39 (181)
                      |.++. .++++|++|+|||.+++.++.
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHH
Confidence            34444 578889999999999998864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.72  E-value=0.0075  Score=43.22  Aligned_cols=21  Identities=19%  Similarity=0.487  Sum_probs=17.6

Q ss_pred             CccEEEEEcCCCCChHHHHHhh
Q 030233           16 CRIKLLMVGLDASGKTTILYKM   37 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~   37 (181)
                      ..++ +++|+.|+|||+++.++
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHH
Confidence            3454 68899999999999987

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.26  E-value=0.0085  Score=41.00  Aligned_cols=18  Identities=33%  Similarity=0.420  Sum_probs=14.4

Q ss_pred             EEEEcCCCCChHHH-HHhh
Q 030233           20 LLMVGLDASGKTTI-LYKM   37 (181)
Q Consensus        20 i~~~G~~~~GKssl-~~~~   37 (181)
                      ++|.|.+|+||||. +.++
T Consensus        17 ~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHH
Confidence            68999999999976 4443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.011  Score=42.65  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCChHHHHHhhhc
Q 030233           18 IKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        18 ~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -+++|+|.+|+|||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4699999999999999877753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.013  Score=39.53  Aligned_cols=21  Identities=14%  Similarity=0.219  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      -.++.|++|+|||+|+-.++.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            367999999999999877753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.19  E-value=0.011  Score=40.77  Aligned_cols=16  Identities=44%  Similarity=0.609  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCChHHHH
Q 030233           19 KLLMVGLDASGKTTIL   34 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~   34 (181)
                      .++|.|.+||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3789999999999764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.97  E-value=0.12  Score=33.49  Aligned_cols=68  Identities=9%  Similarity=-0.003  Sum_probs=46.6

Q ss_pred             CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCCCC
Q 030233           60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL-VFANKQDLPNVM  134 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~  134 (181)
                      ...+.++|+|+....  .....+..+|.++++.... ..++.........+.+    .+.|++ +|.|+.+..+..
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~~  179 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDRD  179 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTTC
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh----hhhhhhhhhhcccccccch
Confidence            467999999986543  3344566799999999875 5566666655554433    366766 889999876543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.71  E-value=0.021  Score=33.63  Aligned_cols=24  Identities=0%  Similarity=0.010  Sum_probs=21.5

Q ss_pred             CCccEEEEEcCCCCChHHHHHhhh
Q 030233           15 QCRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        15 ~~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      ++-+.|.+-|.+|+|||++.+.+.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            456899999999999999999885

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.021  Score=39.04  Aligned_cols=32  Identities=22%  Similarity=0.169  Sum_probs=24.4

Q ss_pred             hhhCCC-CccEEEEEcCCCCChHHHHHhhhcCC
Q 030233           10 KRFFPQ-CRIKLLMVGLDASGKTTILYKMKLGE   41 (181)
Q Consensus        10 ~~~~~~-~~~~i~~~G~~~~GKssl~~~~~~~~   41 (181)
                      ..+.|- +--|++++|++|+|||+|+..++.+.
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            334443 45689999999999999998887643

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.29  E-value=0.03  Score=37.85  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ++--+.+.|++++|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            345578889999999999998865

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.97  E-value=0.03  Score=37.41  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=19.4

Q ss_pred             ccEEEEEcCCCCChHHHHHhhhc
Q 030233           17 RIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        17 ~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ...|++.|++|+||+.+++.+-.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            44589999999999999988854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.035  Score=39.25  Aligned_cols=19  Identities=32%  Similarity=0.394  Sum_probs=15.7

Q ss_pred             EEEEEcCCCCChHHHHHhh
Q 030233           19 KLLMVGLDASGKTTILYKM   37 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~   37 (181)
                      -.++.|++|+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            5788999999999987543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.55  E-value=0.071  Score=34.18  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ....+++.|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999988764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.34  E-value=0.069  Score=36.17  Aligned_cols=25  Identities=20%  Similarity=0.197  Sum_probs=21.0

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +--|++++|++|+|||+|+..++.+
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            3458999999999999998888643

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.28  E-value=0.068  Score=35.76  Aligned_cols=72  Identities=14%  Similarity=0.089  Sum_probs=39.9

Q ss_pred             CeEEEEEEcCCChhh-HHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeE-EEEEeCCCCCC
Q 030233           60 NKSFCVWDVGGQNKI-RALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAAL-LVFANKQDLPN  132 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~-~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~  132 (181)
                      ...+.++|+|+.... ..........+|.++++.+.. ..++.........+.......+.++ -++.|+.+...
T Consensus       115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred             cCCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC
Confidence            467999999864322 112222334578888888764 5556554444333322111134443 37889988655

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.09  E-value=0.085  Score=33.32  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChHHHHHhhhcC
Q 030233           20 LLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~~   40 (181)
                      ++|+|...||||.+..+++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.91  E-value=0.12  Score=34.65  Aligned_cols=28  Identities=18%  Similarity=0.237  Sum_probs=18.5

Q ss_pred             hhhCCCCccEEEEEcCCCCChHHHHHhh
Q 030233           10 KRFFPQCRIKLLMVGLDASGKTTILYKM   37 (181)
Q Consensus        10 ~~~~~~~~~~i~~~G~~~~GKssl~~~~   37 (181)
                      ..+.+...--|.+.|..|+||||+.-.+
T Consensus        13 ~~~~~~~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          13 DDIARNEHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             HHHHTTSCEEEEEECSTTSSHHHHHHHH
T ss_pred             HHhhcCCCEEEEEECCCCCCHHHHHHHH
Confidence            3334344344566699999999986555

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.99  E-value=0.1  Score=34.40  Aligned_cols=20  Identities=30%  Similarity=0.569  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChHHHHHhhhc
Q 030233           20 LLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~   39 (181)
                      +++.|+..+||||+++.+.-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            68999999999999998853

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.95  E-value=0.14  Score=34.48  Aligned_cols=20  Identities=30%  Similarity=0.391  Sum_probs=16.1

Q ss_pred             EEEEEcCCCCChHHHHHhhh
Q 030233           19 KLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~   38 (181)
                      -|.+.|..|+||||+.-.++
T Consensus        10 ~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHHH
Confidence            46789999999999765553

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.56  E-value=0.11  Score=33.93  Aligned_cols=20  Identities=35%  Similarity=0.612  Sum_probs=17.9

Q ss_pred             EEEEcCCCCChHHHHHhhhc
Q 030233           20 LLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        20 i~~~G~~~~GKssl~~~~~~   39 (181)
                      +++.|+..+||||+++++.-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999998853

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.51  E-value=0.12  Score=30.66  Aligned_cols=21  Identities=19%  Similarity=0.048  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCChHHHHHhhhc
Q 030233           19 KLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~~~~~   39 (181)
                      ..++.++.|+|||.++-.++.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            457789999999998765543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.29  E-value=0.13  Score=32.88  Aligned_cols=20  Identities=25%  Similarity=0.409  Sum_probs=16.5

Q ss_pred             EEEEEcCC-CCChHHHHHhhh
Q 030233           19 KLLMVGLD-ASGKTTILYKMK   38 (181)
Q Consensus        19 ~i~~~G~~-~~GKssl~~~~~   38 (181)
                      ++.|.|-. ||||||+.--++
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            67899985 999999976664

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.83  E-value=0.091  Score=35.33  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=23.1

Q ss_pred             HHHhhhhCCCCccEEEEEcCCCCChHHHHHhh
Q 030233            6 SRLAKRFFPQCRIKLLMVGLDASGKTTILYKM   37 (181)
Q Consensus         6 ~~~~~~~~~~~~~~i~~~G~~~~GKssl~~~~   37 (181)
                      ..+.+.+.....++-++-|+.|||||-..-..
T Consensus        93 ~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a  124 (264)
T d1gm5a3          93 QEIRNDMISEKPMNRLLQGDVGSGKTVVAQLA  124 (264)
T ss_dssp             HHHHHHHHSSSCCCCEEECCSSSSHHHHHHHH
T ss_pred             HHHHHHhhccCcceeeeeccccccccHHHHHH
Confidence            34444555566677899999999999875444

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.27  E-value=0.1  Score=35.84  Aligned_cols=15  Identities=40%  Similarity=0.687  Sum_probs=13.4

Q ss_pred             EEEEcCCCCChHHHH
Q 030233           20 LLMVGLDASGKTTIL   34 (181)
Q Consensus        20 i~~~G~~~~GKssl~   34 (181)
                      -++.|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (313)
T d2olra1          17 AVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            379999999999976

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.08  E-value=0.11  Score=35.85  Aligned_cols=15  Identities=40%  Similarity=0.687  Sum_probs=13.5

Q ss_pred             EEEEcCCCCChHHHH
Q 030233           20 LLMVGLDASGKTTIL   34 (181)
Q Consensus        20 i~~~G~~~~GKssl~   34 (181)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999975

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.87  E-value=0.18  Score=34.05  Aligned_cols=72  Identities=14%  Similarity=0.113  Sum_probs=37.2

Q ss_pred             CeEEEEEEcCCChhhHHH-HHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCeEE-EEEeCCCCCC
Q 030233           60 NKSFCVWDVGGQNKIRAL-WRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAALL-VFANKQDLPN  132 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~  132 (181)
                      +..+.++|+|+....... .......++.++++.... ..++.........+.......+.++. ++.|+.+...
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~  191 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR  191 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcccccccceeehhhcchh
Confidence            467889998864321111 111223467777666543 44555544444443322222445543 7889887543

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=87.82  E-value=0.3  Score=32.05  Aligned_cols=31  Identities=16%  Similarity=0.195  Sum_probs=22.8

Q ss_pred             HhhhhCCCCccEEEEEcCCCCChHHHHHhhh
Q 030233            8 LAKRFFPQCRIKLLMVGLDASGKTTILYKMK   38 (181)
Q Consensus         8 ~~~~~~~~~~~~i~~~G~~~~GKssl~~~~~   38 (181)
                      +.+.+........++.|+.|||||-..-+.+
T Consensus        67 i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          67 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             HHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             HHHHHhccCccCeEEEcCCCCCcHHHHHHHH
Confidence            4444455566788999999999998865443

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.15  E-value=0.14  Score=35.40  Aligned_cols=15  Identities=40%  Similarity=0.685  Sum_probs=13.6

Q ss_pred             EEEEcCCCCChHHHH
Q 030233           20 LLMVGLDASGKTTIL   34 (181)
Q Consensus        20 i~~~G~~~~GKssl~   34 (181)
                      -++.|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            479999999999987

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.57  E-value=0.16  Score=34.55  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhcC
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKLG   40 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~~   40 (181)
                      +--|++++|++|+|||+|+..+..+
T Consensus        67 ~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          67 RGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             TTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeecCCCCChHHHHHHHHHh
Confidence            4468899999999999998766543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.93  E-value=0.35  Score=30.42  Aligned_cols=17  Identities=35%  Similarity=0.286  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCChHHHHH
Q 030233           19 KLLMVGLDASGKTTILY   35 (181)
Q Consensus        19 ~i~~~G~~~~GKssl~~   35 (181)
                      ++++.++.|+|||.+.-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            47889999999997543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.71  E-value=0.21  Score=33.72  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             CccEEEEEcCCCCChHHHHHhhhc
Q 030233           16 CRIKLLMVGLDASGKTTILYKMKL   39 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl~~~~~~   39 (181)
                      +--|++++|++|+|||+|+..+..
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             CCceEeeccCCCCChHHHHHHHHh
Confidence            345789999999999999866543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.68  E-value=0.74  Score=27.86  Aligned_cols=25  Identities=20%  Similarity=0.571  Sum_probs=17.3

Q ss_pred             CccEEEEEcC-CCCChHHHHHhhhcCC
Q 030233           16 CRIKLLMVGL-DASGKTTILYKMKLGE   41 (181)
Q Consensus        16 ~~~~i~~~G~-~~~GKssl~~~~~~~~   41 (181)
                      +++||.++|. ..+|- ++...++.+.
T Consensus         3 ~p~KV~IiGA~G~VG~-~~a~~l~~~~   28 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGY-SLLFRIAAGE   28 (154)
T ss_dssp             CCEEEEESSTTSHHHH-HHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHH-HHHHHHHhcc
Confidence            4679999996 67885 4555555444

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=81.63  E-value=0.27  Score=28.67  Aligned_cols=18  Identities=17%  Similarity=0.052  Sum_probs=13.8

Q ss_pred             CccEEEEEcCCCCChHHH
Q 030233           16 CRIKLLMVGLDASGKTTI   33 (181)
Q Consensus        16 ~~~~i~~~G~~~~GKssl   33 (181)
                      +.-++++.+++|+|||..
T Consensus         6 ~~~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             TTCEEEECCCTTSSTTTT
T ss_pred             cCCcEEEEcCCCCChhHH
Confidence            345678888999999944

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=80.93  E-value=0.53  Score=28.09  Aligned_cols=16  Identities=0%  Similarity=0.158  Sum_probs=13.0

Q ss_pred             CCCeEEEEEeCCCCCC
Q 030233          117 SNAALLVFANKQDLPN  132 (181)
Q Consensus       117 ~~~piilv~nK~D~~~  132 (181)
                      .+++|++.|-..|=..
T Consensus       105 ~g~~Viv~GLd~Df~~  120 (139)
T d2b8ta1         105 NGFVVIISGLDKNFKG  120 (139)
T ss_dssp             TTCEEEEECCSBCTTS
T ss_pred             cCceEEEEEecccccc
Confidence            4789999999999544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.81  E-value=1.8  Score=25.79  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=17.3

Q ss_pred             EEEEEcC-CCCChHHHHHhhhcCCc
Q 030233           19 KLLMVGL-DASGKTTILYKMKLGEI   42 (181)
Q Consensus        19 ~i~~~G~-~~~GKssl~~~~~~~~~   42 (181)
                      ||.++|. ..+| +++...+..+..
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            7999995 8899 666777765543

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.53  E-value=0.57  Score=30.01  Aligned_cols=65  Identities=12%  Similarity=-0.003  Sum_probs=38.7

Q ss_pred             CeEEEEEEcCCChhhHHHHHhhccCCCEEEEEEECCCcccHHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCCC
Q 030233           60 NKSFCVWDVGGQNKIRALWRHYFRDTLGLTFVVDSSDRERISEARNELHQILSDNELSNAA-LLVFANKQDLP  131 (181)
Q Consensus        60 ~~~~~i~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~  131 (181)
                      ...+.++|+|+.....  ....+..+|.+++|.... ..++...........+.    +.+ +-+++|+.+..
T Consensus       109 ~~D~viiD~~~~~~~~--~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~  174 (232)
T d1hyqa_         109 STDILLLDAPAGLERS--AVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL----GTKVLGVVVNRITTL  174 (232)
T ss_dssp             TCSEEEEECCSSSSHH--HHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH----TCEEEEEEEEEECTT
T ss_pred             ccceeeecccccccch--hHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc----ccccccccccccccc
Confidence            3568899999854432  333455699999998875 44444444333332222    334 34788998743