Citrus Sinensis ID: 030240


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
MAGFSRTLASSSLVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTGISPAPAPMEFDGPAVAPTSSAASFKASLVLALGGLLAWVLF
cccccHHHHHHHHHHHHHHHHHHHccEEEEEEEccccccccccccccccHHHHHcccEEEEccEEEEEEcccccEEEEEcHHHHcccccccccccccccccEEEEcccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHc
cHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccEcccccccHHHHHHHcccEEEccEEEEEEccccccEEEEEHHHHHHcccccccEEccccccEEEEcccccEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHc
MAGFSRTLASSSLVLTSLVLFSISFCEARdilvggktdswkipssqsdsLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLScntsspvaeyrdgntkvklnksgpfyfisgtkgscekGQKLIVVVMSSrrrytgispapapmefdgpavaptssaasFKASLVLALGGLLAWVLF
magfsrtlassslVLTSLVLFSISFCEARDILVGGktdswkipssqsdslnqwAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLScntsspvaeyrdgntkvklnKSGPFYFisgtkgscekgQKLIVVVMSSRRRYTGISPAPAPMEFDGPAVAPTSSAASFKASLVLALGGLLAWVLF
MAGFsrtlassslvltslvlfsisfCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTGISPAPAPMEFDGPAVAPTSSAASFKASlvlalggllawvlF
***********SLVLTSLVLFSISFCEARDILVGGKTDSWKI********NQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYT***********************SFKASLVLALGGLLAWVL*
************LVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVV**************************************VLALGGLLAWVLF
*********SSSLVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTGISPAPAPMEFDGPAVAPTSSAASFKASLVLALGGLLAWVLF
*AGFSRTLASSSLVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSS****************************SFKASLVLALGGLLAWVLF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAGFSRTLASSSLVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTGISPAPAPMEFDGPAVAPTSSAASFKASLVLALGGLLAWVLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query181 2.2.26 [Sep-21-2011]
Q9SK27182 Early nodulin-like protei no no 0.872 0.868 0.545 1e-44
Q8LC95186 Early nodulin-like protei no no 0.961 0.935 0.505 7e-42
P93328180 Early nodulin-16 OS=Medic N/A no 0.701 0.705 0.409 2e-23
Q9T076 349 Early nodulin-like protei no no 0.701 0.363 0.416 4e-22
Q02917187 Early nodulin-55-2 OS=Gly no no 0.685 0.663 0.431 2e-21
Q5JNJ5237 Early nodulin-like protei no no 0.734 0.561 0.409 9e-20
P93329268 Early nodulin-20 OS=Medic N/A no 0.690 0.466 0.390 1e-19
P80728108 Mavicyanin OS=Cucurbita p N/A no 0.441 0.740 0.437 7e-15
P00302107 Stellacyanin OS=Toxicoden N/A no 0.535 0.906 0.367 3e-13
Q05544137 Early nodulin-55-1 (Fragm no no 0.386 0.510 0.464 4e-10
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2 Back     alignment and function desciption
 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 120/165 (72%), Gaps = 7/165 (4%)

Query: 19  VLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQ 78
           ++F  S   A ++ VGGK+  WKIP S S S  +WA+K RF+VGD +V++Y++ +DSVL+
Sbjct: 19  LIFLFSLAAANEVTVGGKSGDWKIPPSSSYSFTEWAQKARFKVGDFIVFRYESGKDSVLE 78

Query: 79  VTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRY 138
           VTKEAY SCNT++P+A Y DG TKVKL++SGPFYFISG  G CEKGQKL +VV+S   R+
Sbjct: 79  VTKEAYNSCNTTNPLANYTDGETKVKLDRSGPFYFISGANGHCEKGQKLSLVVISP--RH 136

Query: 139 TGISPAPAPMEF-DGPAVAPTSSAASFK-ASLVLALG---GLLAW 178
           + ISPAP+P+EF DGPA+AP   + S +     + LG   GL AW
Sbjct: 137 SVISPAPSPVEFEDGPALAPAPISGSVRLGGCYVVLGLVLGLCAW 181





Arabidopsis thaliana (taxid: 3702)
>sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2 Back     alignment and function description
>sp|P93328|NO16_MEDTR Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1 Back     alignment and function description
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1 Back     alignment and function description
>sp|Q02917|NO552_SOYBN Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1 Back     alignment and function description
>sp|Q5JNJ5|ENL1_ORYSJ Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1 Back     alignment and function description
>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1 Back     alignment and function description
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1 Back     alignment and function description
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1 Back     alignment and function description
>sp|Q05544|NO551_SOYBN Early nodulin-55-1 (Fragment) OS=Glycine max GN=ENOD55-1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
255548730181 Early nodulin 55-2 precursor, putative [ 0.977 0.977 0.642 3e-63
115393868175 phytocyanin-like arabinogalactan-protein 0.922 0.954 0.656 5e-62
224089370179 predicted protein [Populus trichocarpa] 0.950 0.960 0.649 1e-61
225430494178 PREDICTED: early nodulin-like protein 1 0.972 0.988 0.620 2e-58
224091773178 predicted protein [Populus trichocarpa] 0.977 0.994 0.615 5e-57
351721609178 uncharacterized protein LOC100305551 pre 0.850 0.865 0.649 3e-56
224141973214 predicted protein [Populus trichocarpa] 0.889 0.752 0.652 5e-56
351724039175 uncharacterized protein LOC100527928 pre 0.850 0.88 0.654 1e-54
357466009180 Early nodulin-like protein [Medicago tru 0.850 0.855 0.638 6e-54
388518493174 unknown [Lotus japonicus] 0.845 0.879 0.645 9e-53
>gi|255548730|ref|XP_002515421.1| Early nodulin 55-2 precursor, putative [Ricinus communis] gi|223545365|gb|EEF46870.1| Early nodulin 55-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/182 (64%), Positives = 150/182 (82%), Gaps = 5/182 (2%)

Query: 3   GFSRTLASSSLVLTSLVLFSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVG 62
             SR   SS L++ +L LFS+S  +A+DIL+GGKTD+WK+PSSQSDSLN+WAE +RF++G
Sbjct: 2   AMSRFQRSSLLLMITLQLFSLS--DAKDILIGGKTDAWKVPSSQSDSLNKWAESSRFRIG 59

Query: 63  DSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCE 122
           DSLVWKYD+ +DSVL+VT+ AYLSCN S+PV EY+DGNTKVKL ++GP+YFISG +G CE
Sbjct: 60  DSLVWKYDSQKDSVLEVTRAAYLSCNVSNPVEEYKDGNTKVKLERAGPYYFISGAEGHCE 119

Query: 123 KGQKLIVVVMSSRR-RYTGISPAPAPMEFDGPAVAPTSSAAS--FKASLVLALGGLLAWV 179
           KGQK+IVVV+S R  R+ GISPAP+P EF+GPA+APTS+A S  FK S ++A  G+L W 
Sbjct: 120 KGQKMIVVVLSPRHNRFIGISPAPSPAEFEGPAIAPTSTATSLKFKGSFLVAPLGILLWA 179

Query: 180 LF 181
           LF
Sbjct: 180 LF 181




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115393868|gb|ABI96983.1| phytocyanin-like arabinogalactan-protein [Gossypium hirsutum] gi|115393870|gb|ABI96984.1| phytocyanin-like arabinogalactan-protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224089370|ref|XP_002308708.1| predicted protein [Populus trichocarpa] gi|118484663|gb|ABK94202.1| unknown [Populus trichocarpa] gi|222854684|gb|EEE92231.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430494|ref|XP_002285538.1| PREDICTED: early nodulin-like protein 1 [Vitis vinifera] gi|296082140|emb|CBI21145.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224091773|ref|XP_002309349.1| predicted protein [Populus trichocarpa] gi|118482723|gb|ABK93280.1| unknown [Populus trichocarpa] gi|222855325|gb|EEE92872.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351721609|ref|NP_001236959.1| uncharacterized protein LOC100305551 precursor [Glycine max] gi|255625883|gb|ACU13286.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224141973|ref|XP_002324335.1| predicted protein [Populus trichocarpa] gi|222865769|gb|EEF02900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351724039|ref|NP_001235764.1| uncharacterized protein LOC100527928 precursor [Glycine max] gi|255633594|gb|ACU17156.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357466009|ref|XP_003603289.1| Early nodulin-like protein [Medicago truncatula] gi|355492337|gb|AES73540.1| Early nodulin-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388518493|gb|AFK47308.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query181
TAIR|locus:2116767177 ENODL15 "early nodulin-like pr 0.734 0.751 0.622 5.7e-43
TAIR|locus:2179240186 ENODL13 "early nodulin-like pr 0.751 0.731 0.580 5.2e-42
TAIR|locus:2040164182 ENODL14 "early nodulin-like pr 0.751 0.747 0.589 4.6e-41
TAIR|locus:2118691190 ENODL12 "early nodulin-like pr 0.729 0.694 0.536 1.9e-35
TAIR|locus:2174428182 ENODL10 "early nodulin-like pr 0.668 0.664 0.524 1.5e-33
TAIR|locus:2061406226 ENODL11 "early nodulin-like pr 0.591 0.473 0.473 5.5e-32
TAIR|locus:2085775203 ENODL9 "early nodulin-like pro 0.723 0.645 0.514 1.6e-31
TAIR|locus:2127861221 ENODL4 "early nodulin-like pro 0.674 0.552 0.407 1.6e-22
TAIR|locus:4010713954145 ENODL21 "early nodulin-like pr 0.591 0.737 0.495 1.6e-22
TAIR|locus:2154679 370 ENODL1 "early nodulin-like pro 0.674 0.329 0.435 4.3e-22
TAIR|locus:2116767 ENODL15 "early nodulin-like protein 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 84/135 (62%), Positives = 107/135 (79%)

Query:    28 ARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSC 87
             A ++ VGGK+  WKIP S S S N+WA+K RF+VGD +V+KY+A +DSVLQVT+EAY  C
Sbjct:    24 ANEVTVGGKSGDWKIPPSSSFSFNEWAQKARFKVGDFIVFKYEAGKDSVLQVTREAYEKC 83

Query:    88 NTSSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTGISPAPAP 147
             NT+SP A Y DGNTKVKL+++GP YF+SGT+G C+KGQKL +VV++ R   +  SP P+P
Sbjct:    84 NTTSPKASYTDGNTKVKLDQAGPVYFVSGTEGHCQKGQKLRLVVITPRN--SAFSPGPSP 141

Query:   148 MEFDGPAVAPTSSAA 162
              EFDGPAVAPTS AA
Sbjct:   142 SEFDGPAVAPTSGAA 156




GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0009055 "electron carrier activity" evidence=IEA
GO:0031225 "anchored to membrane" evidence=TAS
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
TAIR|locus:2179240 ENODL13 "early nodulin-like protein 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118691 ENODL12 "early nodulin-like protein 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174428 ENODL10 "early nodulin-like protein 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061406 ENODL11 "early nodulin-like protein 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127861 ENODL4 "early nodulin-like protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4010713954 ENODL21 "early nodulin-like protein 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154679 ENODL1 "early nodulin-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
grail3.0013047901
SubName- Full=Putative uncharacterized protein; (179 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
pfam0229884 pfam02298, Cu_bind_like, Plastocyanin-like domain 2e-35
PLN03148167 PLN03148, PLN03148, Blue copper-like protein; Prov 1e-11
>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain Back     alignment and domain information
 Score =  118 bits (299), Expect = 2e-35
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 40  WKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDG 99
           W +P +   +   WA    F+VGD+LV+ YD    +V++VTK  Y SCNTS P+  Y  G
Sbjct: 1   WTVPLNADYT--LWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTG 58

Query: 100 NTKVKLNKSGPFYFISGTKGSCEKGQ 125
           N  + L K G  YFI G  G C+ GQ
Sbjct: 59  NDIIPLTKPGQHYFICGVPGHCKGGQ 84


This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84

>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 181
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 99.97
PRK02710119 plastocyanin; Provisional 98.91
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 98.7
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 98.67
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 98.49
COG3794128 PetE Plastocyanin [Energy production and conversio 98.31
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 98.23
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 97.29
TIGR0265783 amicyanin amicyanin. Members of this family are am 97.28
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 96.75
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 96.03
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 95.97
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 95.86
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 95.07
COG4454158 Uncharacterized copper-binding protein [Inorganic 94.46
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 93.99
PRK10378 375 inactive ferrous ion transporter periplasmic prote 90.49
TIGR02695125 azurin azurin. Azurin is a blue copper-binding pro 90.42
PRK02888635 nitrous-oxide reductase; Validated 89.95
TIGR02376 311 Cu_nitrite_red nitrite reductase, copper-containin 88.52
PF07732117 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01 86.13
PLN02354 552 copper ion binding / oxidoreductase 85.74
PLN02604 566 oxidoreductase 82.05
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information
Probab=100.00  E-value=1.9e-42  Score=278.66  Aligned_cols=107  Identities=32%  Similarity=0.653  Sum_probs=100.1

Q ss_pred             HhhhcccceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccccCCC
Q 030240           21 FSISFCEARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGN  100 (181)
Q Consensus        21 ll~~~a~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~s~G~  100 (181)
                      ++...++|++|+|||+.| |+...+    |++||++++|++||+|+|+|+++.|||+||++++|++|+..+++..+++|+
T Consensus        13 ~~~~~~~a~~~~VGd~~G-W~~~~~----Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~   87 (167)
T PLN03148         13 FSASATTATDHIVGANKG-WNPGIN----YTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGK   87 (167)
T ss_pred             HhhhhccceEEEeCCCCC-cCCCCC----hhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCC
Confidence            455678899999999999 996554    999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEecccccEEEEeCCCCCCcCCCeEEEEeec
Q 030240          101 TKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMS  133 (181)
Q Consensus       101 ~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~  133 (181)
                      +.|+|+++|+|||||+ .+||++|||+.|+|.+
T Consensus        88 d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~  119 (167)
T PLN03148         88 DFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP  119 (167)
T ss_pred             cEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence            9999999999999999 6999999999999964



>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional Back     alignment and domain information
>TIGR02695 azurin azurin Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties Back     alignment and domain information
>PLN02354 copper ion binding / oxidoreductase Back     alignment and domain information
>PLN02604 oxidoreductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
1ws7_A109 Crystal Structure Of Mavicyanin From Cucurbita Pepo 7e-16
1x9r_A116 Umecyanin From Horse Raddish- Crystal Structure Of 4e-10
2cbp_A96 Cucumber Basic Protein, A Blue Copper Protein Lengt 6e-08
1jer_A138 Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 1e-07
1f56_A91 Spinach Plantacyanin Length = 91 8e-06
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109 Back     alignment and structure

Iteration: 1

Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 35/80 (43%), Positives = 50/80 (62%) Query: 52 QWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNKSGPF 111 +WA +F VGDSL++ Y+ +VLQV +E + SCN+SSP A Y G + L + G F Sbjct: 23 KWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTF 82 Query: 112 YFISGTKGSCEKGQKLIVVV 131 YF+ G G C+ GQK+ + V Sbjct: 83 YFLCGIPGHCQLGQKVEIKV 102
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116 Back     alignment and structure
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96 Back     alignment and structure
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 Back     alignment and structure
>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query181
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 2e-39
1jer_A138 Cucumber stellacyanin; electron transport, copper, 2e-37
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 2e-37
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 3e-34
2cbp_A96 Cucumber basic protein; electron transport, phytoc 9e-34
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
 Score =  129 bits (325), Expect = 2e-39
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 30  DILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNT 89
           D  VGG    WK PS        WA    F+VGD L + + A    V  VTK+A+ +C  
Sbjct: 3   DYDVGGD-MEWKRPSD-PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKK 60

Query: 90  SSPVAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVMSSRRRYTGISPAPAP 147
            +P++       K+ LN +GP Y+I      C  GQKL + V+ +     G      P
Sbjct: 61  ENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAG----GAGGGATP 114


>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 100.0
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 100.0
2cbp_A96 Cucumber basic protein; electron transport, phytoc 100.0
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 100.0
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.37
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 99.26
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.15
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 99.1
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 99.04
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 99.04
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 99.01
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 98.99
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 98.98
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 98.98
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 98.98
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 98.97
1byp_A99 Protein (plastocyanin); electron transfer, photosy 98.92
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 98.91
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 98.87
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 98.86
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 98.76
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 98.42
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 98.36
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 98.35
3c75_A132 Amicyanin; copper proteins, electron transfer comp 98.29
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 98.28
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 98.23
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 98.11
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 98.1
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 98.1
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 98.06
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 98.06
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 97.53
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 97.32
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 97.3
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 96.75
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 96.69
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 96.57
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 96.35
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 96.35
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 96.09
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 95.3
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 94.92
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 94.86
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 94.49
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 94.29
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 91.9
1mzy_A 333 Copper-containing nitrite reductase; mutant M182T, 85.04
1oe1_A 336 Dissimilatory copper-containing nitrite reductase; 84.17
1kbv_A 327 ANIA, major outer membrane protein PAN 1; ANIA[NO2 81.16
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
Probab=100.00  E-value=9.1e-43  Score=272.19  Aligned_cols=109  Identities=28%  Similarity=0.565  Sum_probs=101.4

Q ss_pred             cceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEE-ccccCCCCCCCCCcccccCCCcEEEe
Q 030240           27 EARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQV-TKEAYLSCNTSSPVAEYRDGNTKVKL  105 (181)
Q Consensus        27 ~a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V-~~~~y~~C~~~~~~~~~s~G~~~v~L  105 (181)
                      +|++|+|||+.| |+++++ ..+|++||++++|++||+|+|+|++++|+|+|| ++++|+.|+.++++..+++|+++|+|
T Consensus         2 ~a~~~~VGg~~G-W~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L   79 (138)
T 1jer_A            2 QSTVHIVGDNTG-WSVPSS-PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIER   79 (138)
T ss_dssp             CCCEEETTGGGC-SSCCSS-TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEE
T ss_pred             CceEEEECCcCc-CcCCCC-ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEe
Confidence            578999999999 999854 356999999999999999999999999999999 99999999999999999999999999


Q ss_pred             -cccccEEEEeCCCCCCcCCCeEEEEeecCCCC
Q 030240          106 -NKSGPFYFISGTKGSCEKGQKLIVVVMSSRRR  137 (181)
Q Consensus       106 -~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~  137 (181)
                       +++|++||||++++||++||||+|+|....++
T Consensus        80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~  112 (138)
T 1jer_A           80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANAT  112 (138)
T ss_dssp             CCSSEEEEEECCSTTTGGGTCEEEEEEECCC--
T ss_pred             ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCC
Confidence             99999999999999999999999999987764



>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Back     alignment and structure
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ... Back     alignment and structure
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 181
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 1e-36
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 8e-34
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 1e-32
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 5e-32
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]
 Score =  120 bits (303), Expect = 1e-36
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 33  VGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSP 92
           VGG +  W   +        W +  RF+ GD L++ Y+ +  +V+ V +  + +CNT + 
Sbjct: 5   VGG-SGGWTFNT------ESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAG 57

Query: 93  VAEYRDGNTKVKLNKSGPFYFISGTKGSCEKGQKLIVVVM 132
              Y  G  ++KL K G  YFI    G C+ G K+ V  +
Sbjct: 58  AKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96


>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query181
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 100.0
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 99.98
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 99.19
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 99.16
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 99.13
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 99.1
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 99.02
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 99.02
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 98.99
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 98.94
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 98.92
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 98.89
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.76
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.75
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.71
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.71
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.69
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 98.23
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 98.04
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 97.94
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 97.94
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 97.39
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 97.27
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 97.2
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 97.16
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 96.82
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 96.72
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 96.56
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 96.07
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 95.81
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 95.55
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 95.18
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 93.69
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 92.27
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 91.88
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 91.51
d2q9oa1162 Laccase {Melanocarpus albomyces [TaxId: 204285]} 90.11
d1hfua1131 Laccase {Inky cap fungus (Coprinus cinereus) [TaxI 86.51
d1kcwa2146 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 80.4
d2j5wa2145 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 80.1
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]
Probab=100.00  E-value=6.2e-39  Score=237.58  Aligned_cols=103  Identities=39%  Similarity=0.741  Sum_probs=97.7

Q ss_pred             ceEEEEeCCCCCccCCCCCCccchhcccCCceecCCEEEeeeeCCCCeEEEEccccCCCCCCCCCcccccCCCcEEEecc
Q 030240           28 ARDILVGGKTDSWKIPSSQSDSLNQWAEKTRFQVGDSLVWKYDATRDSVLQVTKEAYLSCNTSSPVAEYRDGNTKVKLNK  107 (181)
Q Consensus        28 a~~~~VGg~~G~W~~~~~~~~~Y~~WA~~~~f~vGD~LvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~s~G~~~v~L~~  107 (181)
                      |++|+|||+.| |+.+++  .+|++||++++|++||+|+|+|+++.|+|+||++++|++|+..+++..+++|++.|+|++
T Consensus         2 at~~~VGg~~g-W~~~~~--~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~   78 (104)
T d1ws8a_           2 ATVHKVGDSTG-WTTLVP--YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKR   78 (104)
T ss_dssp             CCEEETTGGGC-SCSSSC--CCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCS
T ss_pred             CcEEEeCCcCc-cCcCCC--cCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEec
Confidence            78999999999 998765  349999999999999999999999999999999999999999999988999999999999


Q ss_pred             cccEEEEeCCCCCCcCCCeEEEEeec
Q 030240          108 SGPFYFISGTKGSCEKGQKLIVVVMS  133 (181)
Q Consensus       108 ~G~~YFic~v~~HC~~GmKl~I~V~~  133 (181)
                      +|++||||++++||++|||++|+|++
T Consensus        79 ~g~~yF~C~~~~HC~~Gmkl~I~V~P  104 (104)
T d1ws8a_          79 PGTFYFLCGIPGHCQLGQKVEIKVDP  104 (104)
T ss_dssp             SEEEEEECCSTTTTTTTCEEEEEECC
T ss_pred             CccEEEECCCcchhhCCCEEEEEECC
Confidence            99999999999999999999999963



>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Back     information, alignment and structure
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j5wa2 b.6.1.3 (A:555-699) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure