Citrus Sinensis ID: 030272

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
ccccEEEccccccccccccEEEEcccccccccHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccEEEcccccEEEEEEccccccccccccccccccccccEEEEEEEEccccccc
cccEEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccHHcccccccHEEEEHEEHcccccccccEccccccccccccccccHHHHHHcccEEccccccEEEEEEEccccccccccccccccEEEccEEEEcEEEEEccccc
mrkstvvdsdtgkskdsrvrtssgtflarGRDKIIRDIEKRIadftffplengeglqvlhyeagqkyephfdyfmdefntknggQRMATVLMYLSDveeggetvfpnaqgnisavpwwnelsecgktglsikpkmgDALLFWsmkpdasldpsslhggcpvikgnkwsstKWIRVNEYKV
mrkstvvdsdtgkskdsrvrtssgtflargrdkiIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSlhggcpvikgnkwsstkwirvneykv
MRKSTVVDSDTGKSKDSRVRTSSGTFLArgrdkiirdiekriADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
*************************FLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKP*******SLHGGCPVIKGNKWSSTKWIRVN****
MRKSTVV***********VRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK*
***********************GTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
*RKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query180 2.2.26 [Sep-21-2011]
P54001534 Prolyl 4-hydroxylase subu yes no 0.861 0.290 0.353 4e-24
P16924516 Prolyl 4-hydroxylase subu yes no 0.855 0.298 0.355 7e-24
Q20065539 Prolyl 4-hydroxylase subu yes no 0.855 0.285 0.361 2e-23
Q60715534 Prolyl 4-hydroxylase subu yes no 0.861 0.290 0.342 5e-23
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.861 0.290 0.337 3e-22
P13674534 Prolyl 4-hydroxylase subu yes no 0.861 0.290 0.337 3e-22
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.861 0.290 0.337 5e-22
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.883 0.297 0.335 3e-21
O15460535 Prolyl 4-hydroxylase subu no no 0.855 0.287 0.327 1e-20
Q60716537 Prolyl 4-hydroxylase subu no no 0.855 0.286 0.327 2e-20
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function desciption
 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 23/178 (12%)

Query: 1   MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLH 60
           + ++TV D +TGK   ++ R S   +L+   D ++  I  RI D T   +   E LQV +
Sbjct: 360 LSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVAN 419

Query: 61  YEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVP 116
           Y  G +YEPHFD+      D F     G R+AT L Y+SDV  GG TVFP          
Sbjct: 420 YGVGGQYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFP---------- 469

Query: 117 WWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 174
                    + G S+ PK G A+ ++++      D S+ H  CPV+ GNKW S KW+ 
Sbjct: 470 ---------EVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLH 518
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
224133600 291 predicted protein [Populus trichocarpa] 1.0 0.618 0.872 7e-92
225468574 288 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.625 0.866 1e-91
147800995 288 hypothetical protein VITISV_014644 [Viti 1.0 0.625 0.866 2e-91
255579590 287 prolyl 4-hydroxylase alpha subunit, puta 1.0 0.627 0.866 4e-91
357483925 289 Prolyl 4-hydroxylase alpha-2 subunit [Me 0.994 0.619 0.871 3e-90
240256489 289 iron ion binding / oxidoreductase/ oxido 1.0 0.622 0.861 3e-90
356540840 290 PREDICTED: prolyl 4-hydroxylase subunit 0.994 0.617 0.860 4e-90
363806698 289 uncharacterized protein LOC100806046 [Gl 0.988 0.615 0.865 2e-89
449491267 287 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.627 0.838 4e-89
449434114 287 PREDICTED: prolyl 4-hydroxylase subunit 1.0 0.627 0.838 6e-89
>gi|224133600|ref|XP_002327635.1| predicted protein [Populus trichocarpa] gi|222836720|gb|EEE75113.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  341 bits (875), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 157/180 (87%), Positives = 172/180 (95%)

Query: 1   MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLH 60
           M+KSTVVDS TGKSKDS+VRTSSGTFL RGRDKI+RDIEKRIADF+F P+E+GEGLQ+LH
Sbjct: 112 MQKSTVVDSSTGKSKDSKVRTSSGTFLPRGRDKIVRDIEKRIADFSFIPVEHGEGLQILH 171

Query: 61  YEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNE 120
           YE GQ+YEPHFDYFMDE+NTKNGGQR+ATVLMYLSDVEEGGETVFP+A+GNISAVPWWNE
Sbjct: 172 YEVGQRYEPHFDYFMDEYNTKNGGQRIATVLMYLSDVEEGGETVFPSAEGNISAVPWWNE 231

Query: 121 LSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV 180
           LSECGK GLS+KPKMGDALLFWSM PD S DPSSLHGGCPVI+GNKWSSTKW+RVNEYKV
Sbjct: 232 LSECGKGGLSVKPKMGDALLFWSMNPDGSPDPSSLHGGCPVIRGNKWSSTKWMRVNEYKV 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225468574|ref|XP_002263060.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296084059|emb|CBI24447.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147800995|emb|CAN64470.1| hypothetical protein VITISV_014644 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255579590|ref|XP_002530636.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223529809|gb|EEF31744.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357483925|ref|XP_003612249.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513584|gb|AES95207.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|240256489|ref|NP_201407.4| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] gi|332010770|gb|AED98153.1| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356540840|ref|XP_003538892.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Glycine max] Back     alignment and taxonomy information
>gi|363806698|ref|NP_001242522.1| uncharacterized protein LOC100806046 [Glycine max] gi|255647110|gb|ACU24023.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449491267|ref|XP_004158845.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434114|ref|XP_004134841.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 1.0 0.622 0.794 4.3e-77
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 1.0 0.627 0.766 3.5e-75
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 1.0 0.618 0.755 6.5e-74
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.988 0.613 0.741 7e-70
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.988 0.597 0.538 1.1e-48
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.988 0.595 0.527 5.4e-47
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.983 0.614 0.525 3.8e-46
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.916 0.583 0.508 4.3e-38
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.838 0.524 0.439 2e-31
TAIR|locus:1005716656274 P4H13 "prolyl 4-hydroxylase 13 0.711 0.467 0.440 2.5e-26
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 143/180 (79%), Positives = 155/180 (86%)

Query:     1 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLH 60
             M KSTVVD  TGKS DSRVRTSSGTFLA              +DFTF P+E+GEGLQVLH
Sbjct:   110 MEKSTVVDEKTGKSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPVEHGEGLQVLH 169

Query:    61 YEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNE 120
             YE GQKYEPH+DYFMDE+NT+NGGQR+ATVLMYLSDVEEGGETVFP A+GN SAVPWWNE
Sbjct:   170 YEIGQKYEPHYDYFMDEYNTRNGGQRIATVLMYLSDVEEGGETVFPAAKGNYSAVPWWNE 229

Query:   121 LSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV 180
             LSECGK GLS+KPKMGDALLFWSM PDA+LDPSSLHGGC VIKGNKWSSTKW+RV+EYKV
Sbjct:   230 LSECGKGGLSVKPKMGDALLFWSMTPDATLDPSSLHGGCAVIKGNKWSSTKWLRVHEYKV 289
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1005716656 P4H13 "prolyl 4-hydroxylase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00570032
hypothetical protein (291 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.IV.4171.1
proline dehydrogenase (EC-1.5.99.8) (435 aa)
     •  0.899
gw1.I.4241.1
hypothetical protein (326 aa)
     •  0.899
gw1.123.99.1
proline dehydrogenase (EC-1.5.99.8) (440 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_VI0132
pyrroline-5-carboxylate reductase (EC-1.5.1.2) (279 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 3e-71
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 2e-45
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 2e-12
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 7e-09
COG3128229 COG3128, PiuC, Uncharacterized iron-regulated prot 0.001
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  217 bits (553), Expect = 3e-71
 Identities = 99/179 (55%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 1   MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLH 60
           +++S V D+ +GKS  S VRTSSG FL + +D ++  IE+RIA +TF P EN E +Q+L 
Sbjct: 79  IQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERIAAWTFLPEENAENIQILR 138

Query: 61  YEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNE 120
           YE GQKYEPHFDYF D+ N   GG R ATVLMYLS V++GGETVFPNA+G  +  P  + 
Sbjct: 139 YEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQ-PKDDT 197

Query: 121 LSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 179
            SEC   GL++KP  GDA+LF+S+  D   DP SLHG CPVI+G KWS+ KWI +  Y+
Sbjct: 198 FSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE 256

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|225670 COG3128, PiuC, Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 180
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.91
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.77
PHA02813 354 hypothetical protein; Provisional 99.77
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.73
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.35
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.73
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 98.72
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.68
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.66
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.63
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 98.27
PHA02866 333 Hypothetical protein; Provisional 98.17
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 98.04
TIGR02466201 conserved hypothetical protein. This family consis 97.75
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 97.36
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 97.28
KOG3844 476 consensus Predicted component of NuA3 histone acet 97.13
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 96.69
COG3826236 Uncharacterized protein conserved in bacteria [Fun 96.2
PHA02923 315 hypothetical protein; Provisional 96.2
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 95.79
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 91.64
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.86
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.33
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 87.79
PLN02485329 oxidoreductase 87.4
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 86.84
PLN02365300 2-oxoglutarate-dependent dioxygenase 85.97
PLN02904357 oxidoreductase 84.45
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.12
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 83.78
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.69
PF14033501 DUF4246: Protein of unknown function (DUF4246) 83.57
PLN02947374 oxidoreductase 83.52
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 83.01
PLN02254358 gibberellin 3-beta-dioxygenase 81.91
PLN02997325 flavonol synthase 81.81
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 80.71
PLN02276361 gibberellin 20-oxidase 80.38
COG5285299 Protein involved in biosynthesis of mitomycin anti 80.33
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.5e-53  Score=352.44  Aligned_cols=178  Identities=56%  Similarity=0.976  Sum_probs=160.9

Q ss_pred             CcceEEEeCCCCCccccCcEeeeeeeecCCCCHHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCcccccccc
Q 030272            1 MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT   80 (180)
Q Consensus         1 ~~~s~v~~~~~~~~~~~~~Rts~~~~l~~~~~~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~   80 (180)
                      |++|+|+++.+++...+++|||+++||+..+++++++|++||++++++|.++.|+|||+||++||+|++|+|++.+....
T Consensus        79 l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~  158 (310)
T PLN00052         79 IQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQ  158 (310)
T ss_pred             cccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCcccccccc
Confidence            57899998877777888999999999998789999999999999999999999999999999999999999998754334


Q ss_pred             CCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCC
Q 030272           81 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCP  160 (180)
Q Consensus        81 ~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~p  160 (180)
                      ..+++|++|+|+||||+++||||+||.+... ...+..+.+++|.+.+++|+|++|+||||+|+++||.+|++++|+|||
T Consensus       159 ~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~-~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcP  237 (310)
T PLN00052        159 ALGGHRYATVLMYLSTVDKGGETVFPNAEGW-ENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCP  237 (310)
T ss_pred             ccCCceeEEEEEEeccCCCCCceecCCcccc-cccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCe
Confidence            5679999999999999999999999987431 123345678999999999999999999999999999999999999999


Q ss_pred             CCcCeEEEEEEeeeecccc
Q 030272          161 VIKGNKWSSTKWIRVNEYK  179 (180)
Q Consensus       161 V~~G~K~~~~~W~~~~~~~  179 (180)
                      |++|+||++|+|||.++|.
T Consensus       238 Vi~G~Kw~atkWi~~~~~~  256 (310)
T PLN00052        238 VIEGEKWSAPKWIHIRSYE  256 (310)
T ss_pred             eecCeEEEEEEeeeccccc
Confidence            9999999999999999873

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14033 DUF4246: Protein of unknown function (DUF4246) Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 7e-54
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 7e-54
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 8e-54
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 8e-52
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 2e-27
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  206 bits (523), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 100/177 (56%), Positives = 125/177 (70%), Gaps = 6/177 (3%)
Query: 1   MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLH 60
           M KS+VVD+++GKS DS +RTS+GT+ A              A  T  PLEN EGLQVLH
Sbjct: 54  MVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLH 113
Query: 61  YEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWW 118
           Y  GQKYEPH+DYF D  N   ++GGQR+ T+LMYL+ VEEGGETV PNA+  ++   W 
Sbjct: 114 YHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW- 172
Query: 119 NELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 175
              SEC K GL++KP  GDAL+F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 173 ---SECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 4e-83
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 2e-73
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 1e-08
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 1e-06
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  244 bits (623), Expect = 4e-83
 Identities = 107/181 (59%), Positives = 135/181 (74%), Gaps = 6/181 (3%)

Query: 1   MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLH 60
           M KS+VVD+++GKS DS +RTS+GT+ A+G D +I  IEKR+A  T  PLEN EGLQVLH
Sbjct: 45  MVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLH 104

Query: 61  YEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWW 118
           Y  GQKYEPH+DYF D  N   ++GGQR+ T+LMYL+ VEEGGETV PNA+  ++   W 
Sbjct: 105 YHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW- 163

Query: 119 NELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEY 178
              SEC K GL++KP  GDAL+F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V   
Sbjct: 164 ---SECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPI 220

Query: 179 K 179
            
Sbjct: 221 G 221
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 99.95
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.87
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.27
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.79
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.24
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 96.94
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 96.85
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 96.38
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 95.55
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 95.15
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 92.72
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 84.59
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 81.51
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 80.83
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=1.7e-48  Score=312.69  Aligned_cols=175  Identities=61%  Similarity=1.039  Sum_probs=157.0

Q ss_pred             CcceEEEeCCCCCccccCcEeeeeeeecCCCCHHHHHHHHHHHHhcCCCCCCCCccEEEEcCCCCccCCCCCcccccccc
Q 030272            1 MRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT   80 (180)
Q Consensus         1 ~~~s~v~~~~~~~~~~~~~Rts~~~~l~~~~~~~~~~l~~Ri~~~~~~~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~~~   80 (180)
                      |++|+|++..++....+.+|+|.++||+..+++++++|.+||.+++++|....|++||++|++|++|++|+|++....+.
T Consensus        45 ~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~  124 (224)
T 2jig_A           45 MVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNA  124 (224)
T ss_dssp             CEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHHHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSS
T ss_pred             CeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHHHHHHhCCCcccccceEEEecCCCccccCcccCCCCcccc
Confidence            46889988766777788899999999998778999999999999999999999999999999999999999998653211


Q ss_pred             --CCCCceeEEEEEeecCCCCCcceecCCCCCCCCCCccccccccccCcCeeEecceeeEEEEeecCCCCCCCCCCcccC
Q 030272           81 --KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGG  158 (180)
Q Consensus        81 --~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~~~~~~~~~~~~~~c~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g  158 (180)
                        ..+++|++|+|+||||+++||||+||.+..    .+.++.+++|.+.+++|+|++|+||||+|+.+||.+|++++|+|
T Consensus       125 ~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~----~~~~~~~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~  200 (224)
T 2jig_A          125 GPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQ----KVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGS  200 (224)
T ss_dssp             SCCCCSCEEEEEEEECSCCSEECCEEETTSSS----CCCSTTSCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEE
T ss_pred             ccccCCCeEEEEEEEecCCCCCCceeCCCccc----ccccccccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccC
Confidence              346899999999999999999999998742    24567788998889999999999999999999999999999999


Q ss_pred             CCCCcCeEEEEEEeeeecccc
Q 030272          159 CPVIKGNKWSSTKWIRVNEYK  179 (180)
Q Consensus       159 ~pV~~G~K~~~~~W~~~~~~~  179 (180)
                      |||++|+||++++||+.++|+
T Consensus       201 ~PV~~G~K~~~~~Wi~~~~~~  221 (224)
T 2jig_A          201 CPTLKGDKWSATKWIHVAPIG  221 (224)
T ss_dssp             CCEEESEEEEEEEEEESSCCC
T ss_pred             CccccceEEEEEEeEEcCCcC
Confidence            999999999999999999985
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 96.93
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 96.77
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 93.09
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 91.54
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 81.67
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0014  Score=50.72  Aligned_cols=126  Identities=15%  Similarity=0.213  Sum_probs=67.1

Q ss_pred             HHHHHHHHhcCCCCCCCCccEEEEc-CCCC---ccCCCCCccccccccCCCCceeEEEEEeecCCC-CCcceec-CCCCC
Q 030272           37 DIEKRIADFTFFPLENGEGLQVLHY-EAGQ---KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PNAQG  110 (180)
Q Consensus        37 ~l~~Ri~~~~~~~~~~~E~lqv~~Y-~~G~---~y~~H~D~~~~~~~~~~~~~R~~T~l~YLnd~~-~GGeT~F-p~~~~  110 (180)
                      .|.+.+..+.|-........-+.+. ..|.   ...+|.|.....   .......+|+.++|.|+. +.|.+.| |....
T Consensus        96 ~i~~~~~~llg~~~~~~~~~~~~k~p~~~~~~~~~~wHqD~~~~~---~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk  172 (296)
T d2a1xa1          96 EILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQDLHYFP---FRPSDLIVCAWTAMEHISRNNGCLVVLPGTHK  172 (296)
T ss_dssp             HHHHHHHHHHCSSEEEEEEEEEEECCC--------CCBCGGGGCC---EECGGGEEEEEEESSCBCTTBTCEEECTTGGG
T ss_pred             HHHHHHHHhhccccceecccccccccccccccccCCcccCccccc---cCCccccceeeEeeeeccccccccceeccccc
Confidence            4555566666643221111122232 2232   245899974321   123456899999999985 4566666 65421


Q ss_pred             CC---CCCccc--------cccccc--cCcCeeEecceeeEEEEeecCCCCCCCCCCcccCCCCCc-CeEEEEEEeee
Q 030272          111 NI---SAVPWW--------NELSEC--GKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK-GNKWSSTKWIR  174 (180)
Q Consensus       111 ~~---~~~~~~--------~~~~~c--~~~~~~v~P~~G~al~f~n~~~~g~~d~~~~H~g~pV~~-G~K~~~~~W~~  174 (180)
                      ..   .....+        ....+-  ...-+.+.-++|++|||..         +++|++.|-.+ ..|++++.-+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~k~Gdvli~~~---------~l~Hgs~~N~S~~~R~~l~~~y~  241 (296)
T d2a1xa1         173 GSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHP---------LLIHGSGQNKTQGFRKAISCHFA  241 (296)
T ss_dssp             SCCCCCCC-----------CCCCC-CCCSCCEEECBCTTCEEEECT---------TCCEEECCBCSSSCEEEEEEEEE
T ss_pred             ccccccccccccCCcccccccccchhhccceEEeeecCCcEEEECC---------CeeecCCCCCCcCceEEEEEEEE
Confidence            10   000000        000000  0123567778999999964         99999999664 47888876543
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure