Citrus Sinensis ID: 030287

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPEYQLQ
Secondary Structure (PSIPRED)
cccccccccccEEEccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEEccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccc
Coil and Loop (DISEMBL)
mslslqgchrlrgrragsslyldvhivvdpfssvsaahgvgenvrhqihkshpevsevfihidpayfqfspstmdqlglegckahssnicvddldIDAVVYNTlstkfpekmgVERITHHLLHGKILLEVevsmspdtsIRDAMKVAEEAEKEIMKAAPNVFQVSVKLrlgrpipeyqlq
Flexible Loop (DISEMBL)
mslslqgcHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEvevsmspdtSIRDAMKVAEEAEKEImkaapnvfqvsvklrlgrpipeyqlq
Low Complexity Region (SEG)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDamkvaeeaekeimkaaPNVFQVSVKLRLGRPIPEYQLQ
Disordered region (IsUnstruct)
**************RAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEV***************************NVFQVSVKLR***********
Disordered Region (DISOPRED)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF*******************************VVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP*****
Disordered Region (DISEMBL)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPEYQLQ
Disordered Region (DISPRO)
****LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQ*******************NICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPEYQLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
Q8L725	471	Metal tolerance protein C	yes	no	0.9	0.343	0.608	7e-50
Q10LJ2	389	Metal tolerance protein 2	yes	no	0.327	0.151	0.745	1e-19

>sp|Q8L725|MTPC1_ARATH Metal tolerance protein C1 OS=Arabidopsis thaliana GN=MTPC1 PE=2 SV=1

 Score =  196 bits (498), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 124/166 (74%), Gaps = 4/166 (2%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHG 124
           A+ QFS ST D   +       SNIC +   ++A V +  S++  EK+ ++RIT HLLH 
Sbjct: 367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSEKLTIKRITPHLLHS 422

Query: 125 KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170
           KILL++ V+M    SI+D M  AE AEKEI+KAAPNV +VS++L L
Sbjct: 423 KILLQIVVAMPSTMSIQDVMIAAEHAEKEILKAAPNVARVSIQLSL 468

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q10LJ2|MTP2_ORYSJ Metal tolerance protein 2 OS=Oryza sativa subsp. japonica GN=MTP2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 51/59 (86%)

Query: 4   SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62
            ++GCHRLRGR+AG+SLYLDVHI V PF SVSAAH +GE VRHQI KSH +V+EVFIHI
Sbjct: 320 GVKGCHRLRGRKAGTSLYLDVHIEVYPFLSVSAAHDIGETVRHQIQKSHNQVAEVFIHI 378

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
359479745	520	PREDICTED: metal tolerance protein C1 [V	0.95	0.328	0.676	5e-57
255559272	479	cation efflux protein/ zinc transporter,	0.944	0.354	0.590	4e-54
224132372	453	metal tolerance protein [Populus trichoc	0.933	0.370	0.621	9e-54
449436799	500	PREDICTED: metal tolerance protein C1-li	0.944	0.34	0.607	6e-52
297828503	462	hypothetical protein ARALYDRAFT_322424 [	0.916	0.357	0.620	5e-51
30690801	471	metal tolerance protein C1 [Arabidopsis	0.9	0.343	0.608	3e-48
356500266	491	PREDICTED: metal tolerance protein C1-li	0.955	0.350	0.559	3e-46
30690804	468	metal tolerance protein C1 [Arabidopsis	0.883	0.339	0.608	6e-46
356535392	490	PREDICTED: metal tolerance protein C1-li	0.938	0.344	0.560	1e-45
3738295	483	unknown protein [Arabidopsis thaliana]	0.9	0.335	0.567	2e-45

>gi|359479745|ref|XP_002269478.2| PREDICTED: metal tolerance protein C1 [Vitis vinifera] gi|296086610|emb|CBI32245.3| unnamed protein product [Vitis vinifera]

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 117/173 (67%), Positives = 135/173 (78%), Gaps = 2/173 (1%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHI VDPFSSVSAAH VGENVRHQIHKSHP VSEVFIHIDP
Sbjct: 331 VKGCHRLRGRRAGSSLYLDVHIEVDPFSSVSAAHNVGENVRHQIHKSHPGVSEVFIHIDP 390

Query: 65  AYFQFSPSTMDQL-GLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLH 123
           A  Q SPS M+Q   L+       N+  +   ++ +V N LS+KF EKM VERIT HLL 
Sbjct: 391 AISQISPSIMEQQENLKEMNYQKRNVSSEHNGVE-IVSNVLSSKFSEKMVVERITQHLLQ 449

Query: 124 GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPE 176
           GK LL+VEVSM P   IRDAM+VAEEAE+EI+K A +V +VS+ LRLG+PIPE
Sbjct: 450 GKTLLQVEVSMPPHILIRDAMRVAEEAEEEILKVASDVIRVSILLRLGQPIPE 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559272|ref|XP_002520656.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] gi|223540041|gb|EEF41618.1| cation efflux protein/ zinc transporter, putative [Ricinus communis]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 132/176 (75%), Gaps = 6/176 (3%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSL+LDVHI VDPF SVSAAH +GE VR +IH+S+PE++EVFIHIDP
Sbjct: 310 VKGCHRLRGRRAGSSLHLDVHIEVDPFLSVSAAHEIGEKVRQEIHESYPEIAEVFIHIDP 369

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHG 124
           AY  FS +      +EG       I +DD DI  ++ NT  +KFPEKM VERIT H L  
Sbjct: 370 AYLHFSSN------VEGTADQDRYISLDDKDIAMIISNTFLSKFPEKMEVERITRHFLQQ 423

Query: 125 KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPEYQLQ 180
           K+LLE+EVS+ PD  I DAM VAE+AEKEI+K A ++ QVS++LRLG P+P++  +
Sbjct: 424 KVLLEMEVSLPPDILIGDAMVVAEKAEKEILKVASDIIQVSIQLRLGNPVPKFGFK 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132372|ref|XP_002321323.1| metal tolerance protein [Populus trichocarpa] gi|222862096|gb|EEE99638.1| metal tolerance protein [Populus trichocarpa]

 Score =  214 bits (546), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 128/169 (75%), Gaps = 1/169 (0%)

Query: 4   SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63
            +QGCHRLRGRRAGSSLYLDVHIVVDPF SVSAAH +GENVR +IH SHP ++EVFIHID
Sbjct: 284 GVQGCHRLRGRRAGSSLYLDVHIVVDPFLSVSAAHEIGENVRQEIHNSHPGIAEVFIHID 343

Query: 64  PAYFQFSPSTMDQ-LGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLL 122
           PAY   SP+ MDQ   L G    +  I +DD DI+ +V +  S+K PEK+ VERIT HL+
Sbjct: 344 PAYLCISPTMMDQEENLNGKVNQNKKISLDDKDIELIVSDVFSSKIPEKIEVERITRHLM 403

Query: 123 HGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG 171
            G ILL++E+SM P   IRDAM++A EAEKEI+KA+ ++ QV   LRLG
Sbjct: 404 QGNILLQIEISMRPSILIRDAMELAGEAEKEILKASSSIIQVGFLLRLG 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436799|ref|XP_004136180.1| PREDICTED: metal tolerance protein C1-like [Cucumis sativus] gi|449524166|ref|XP_004169094.1| PREDICTED: metal tolerance protein C1-like [Cucumis sativus]

 Score =  208 bits (530), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 130/176 (73%), Gaps = 6/176 (3%)

Query: 4   SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63
            ++GCHRLRGRRAGSSLYLDVHI VDPF SVSAAH +GENVRH+IH SHPEVSEVFIHID
Sbjct: 325 GVKGCHRLRGRRAGSSLYLDVHIEVDPFLSVSAAHSIGENVRHEIHTSHPEVSEVFIHID 384

Query: 64  PAYFQFSPSTMDQLGLEGCKAHSSNICVD---DLDIDAVVYNTLSTKFPEKMGVERITHH 120
           P+   F P   +Q   +   A +SN   D     +I+A V + + +KFPE M VERIT H
Sbjct: 385 PSISHFPPKLSNQ---QAASAGTSNQSTDFPLTENIEATVSDIVQSKFPENMMVERITPH 441

Query: 121 LLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPE 176
           LL GKILL++EVSM PD  IR+AM VA+ AE EI+KA  N+  VS++LRLG+ IP+
Sbjct: 442 LLQGKILLQIEVSMPPDLLIRNAMDVAKRAEMEILKADSNIVHVSIQLRLGQQIPQ 497

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828503|ref|XP_002882134.1| hypothetical protein ARALYDRAFT_322424 [Arabidopsis lyrata subsp. lyrata] gi|297327973|gb|EFH58393.1| hypothetical protein ARALYDRAFT_322424 [Arabidopsis lyrata subsp. lyrata]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 103/166 (62%), Positives = 127/166 (76%), Gaps = 1/166 (0%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 295 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINMNHPEVSEVFIHIDP 354

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHG 124
           A+ QFS STMD   +       SNIC +   ++A V +  S++F EKM ++RIT HLLH 
Sbjct: 355 AFLQFSCSTMDHDSITKSN-QESNICQEIKHVEATVSDIFSSQFSEKMTIKRITTHLLHS 413

Query: 125 KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170
           KILL++ V+M    +I+D M+ AE AEKEI+KAAPNV +VS++L L
Sbjct: 414 KILLQIVVAMPSTMTIQDVMRAAEHAEKEILKAAPNVARVSIQLSL 459

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690801|ref|NP_182304.2| metal tolerance protein C1 [Arabidopsis thaliana] gi|71151963|sp|Q8L725.1|MTPC1_ARATH RecName: Full=Metal tolerance protein C1; Short=AtMTPc1; AltName: Full=AtMTP6 gi|22655099|gb|AAM98140.1| unknown protein [Arabidopsis thaliana] gi|30387579|gb|AAP31955.1| At2g47830 [Arabidopsis thaliana] gi|330255799|gb|AEC10893.1| metal tolerance protein C1 [Arabidopsis thaliana]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 124/166 (74%), Gaps = 4/166 (2%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHG 124
           A+ QFS ST D   +       SNIC +   ++A V +  S++  EK+ ++RIT HLLH 
Sbjct: 367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSEKLTIKRITPHLLHS 422

Query: 125 KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170
           KILL++ V+M    SI+D M  AE AEKEI+KAAPNV +VS++L L
Sbjct: 423 KILLQIVVAMPSTMSIQDVMIAAEHAEKEILKAAPNVARVSIQLSL 468

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500266|ref|XP_003518954.1| PREDICTED: metal tolerance protein C1-like [Glycine max]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 125/177 (70%), Gaps = 5/177 (2%)

Query: 4   SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63
            ++GCHRLRGRRAGS LYLDVHI VDPFSSVSAAH +GENVRHQIHKSHP V EVFIHID
Sbjct: 318 GVKGCHRLRGRRAGSYLYLDVHIEVDPFSSVSAAHDIGENVRHQIHKSHPTVVEVFIHID 377

Query: 64  PAYFQFSPSTMDQLGLEGCKAHSSNICV-DDLDIDAVVYNTLSTKFPEKMGVERITHHLL 122
           PA    S  +  Q    G   HSS +   +D +I  +V + +S+ FP+ M VE IT H+ 
Sbjct: 378 PA---MSHVSCQQDSWSGGMDHSSIVPAEEDSNIKGIVSDIISSNFPQ-MSVECITRHMF 433

Query: 123 HGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPEYQL 179
             KI+L++EVSM PD  I  AM++A++AE+EI+KA  N   V ++LRLG+P P+  L
Sbjct: 434 QSKIVLQIEVSMPPDIPIGHAMEMAKQAEEEILKAVSNTIHVGIQLRLGQPFPQINL 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690804|ref|NP_850480.1| metal tolerance protein C1 [Arabidopsis thaliana] gi|330255800|gb|AEC10894.1| metal tolerance protein C1 [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 123/166 (74%), Gaps = 7/166 (4%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query: 65  AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHG 124
           A+ QFS ST D   +       SNIC +   ++A V +  S++  EK+ ++RIT HLLH 
Sbjct: 367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSEKLTIKRITPHLLHS 422

Query: 125 KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170
           KILL++ V+M P T   D M  AE AEKEI+KAAPNV +VS++L L
Sbjct: 423 KILLQIVVAM-PST--MDVMIAAEHAEKEILKAAPNVARVSIQLSL 465

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535392|ref|XP_003536229.1| PREDICTED: metal tolerance protein C1-like [Glycine max]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/173 (56%), Positives = 123/173 (71%), Gaps = 4/173 (2%)

Query: 4   SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63
            ++GCH LRGRRAGS LYLDVHI VDPFSSVSAAH +GENVRHQIHKSHP V EVFIHID
Sbjct: 318 GVKGCHCLRGRRAGSYLYLDVHIEVDPFSSVSAAHDIGENVRHQIHKSHPTVVEVFIHID 377

Query: 64  PAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLH 123
           PA    S ++  +    G    SS +  +D +I+ +V + +S+ FP+ M VERI  H+  
Sbjct: 378 PA---MSHASHQRDSWSGDMNQSSIVPAEDSNIEGIVSDIISSNFPQ-MSVERIARHMFQ 433

Query: 124 GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPE 176
            KI+L++EVSM PD  I  AM++A+ AEKEI KA  N   VS++LRLG+P P+
Sbjct: 434 SKIVLQIEVSMPPDIPIGHAMEMAKLAEKEIFKAVSNTIHVSIQLRLGQPFPQ 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3738295|gb|AAC63637.1| unknown protein [Arabidopsis thaliana]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/178 (56%), Positives = 124/178 (69%), Gaps = 16/178 (8%)

Query: 5   LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI-- 62
           ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHI  
Sbjct: 307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIGI 366

Query: 63  ----------DPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKM 112
                     DPA+ QFS ST D   +       SNIC +   ++A V +  S++  EK+
Sbjct: 367 EHLSSQTFLADPAFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSEKL 422

Query: 113 GVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170
            ++RIT HLLH KILL++ V+M    SI+D M  AE AEKEI+KAAPNV +VS++L L
Sbjct: 423 TIKRITPHLLHSKILLQIVVAMPSTMSIQDVMIAAEHAEKEILKAAPNVARVSIQLSL 480

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2043328	471	AT2G47830 [Arabidopsis thalian	0.9	0.343	0.542	2.6e-40
TIGR_CMR|CBU_1362	378	CBU_1362 "cation-efflux family	0.311	0.148	0.482	2e-07
TIGR_CMR|GSU_2613	296	GSU_2613 "cation efflux family	0.311	0.189	0.357	7.2e-05
UNIPROTKB|Q4K5J6	298	fieF "Cation diffusion facilit	0.316	0.191	0.344	0.00076

TAIR|locus:2043328 AT2G47830 [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 90/166 (54%), Positives = 112/166 (67%)

Query:     5 LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct:   307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query:    65 AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHG 124
             A+ QFS ST D   +       SNIC +   ++A V +  S++  EK+ ++RIT HLLH 
Sbjct:   367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSEKLTIKRITPHLLHS 422

Query:   125 KILLEVEVSMSPDTSIRDXXXXXXXXXXXXXXXXPNVFQVSVKLRL 170
             KILL++ V+M    SI+D                PNV +VS++L L
Sbjct:   423 KILLQIVVAMPSTMSIQDVMIAAEHAEKEILKAAPNVARVSIQLSL 468

GO:0006812 "cation transport" evidence=IEA;ISS

GO:0008324 "cation transmembrane transporter activity" evidence=IEA;ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TIGR_CMR|CBU_1362 CBU_1362 "cation-efflux family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H+LR R  G ++++DVHI V P  SVS  H VGE V   + KS   V++V +HIDP
Sbjct:   237 HQLRTRYHGGNIFVDVHIQVAPDISVSEGHYVGEQVHLTLLKSVEHVADVTVHIDP 292

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

TIGR_CMR|GSU_2613 GSU_2613 "cation efflux family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 111 (44.1 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H +RGRR+G  + +D+ + +DP  +V  +H +   V+  I +  P V +V IHI+P
Sbjct:   230 HEIRGRRSGQYIIIDLKLDMDPEMTVKQSHDIATCVKKLIFERFPNVGDVMIHINP 285

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q4K5J6 fieF "Cation diffusion facilitator family transporter FieF" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 104 (41.7 bits), Expect = 0.00076, P = 0.00076
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query:     7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             G H LR R +GS  ++ +H+ +    ++S AHG+ +     I K++P  +EV +H DP
Sbjct:   232 GAHDLRTRISGSHWFVQLHLELPGELTLSVAHGISDQAADAIQKAYPR-AEVLVHADP 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       164   0.00088  107 3  11 22  0.36    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.62u 0.13s 13.75t   Elapsed:  00:00:01
  Total cpu time:  13.62u 0.13s 13.75t   Elapsed:  00:00:01
  Start:  Fri May 10 18:14:17 2013   End:  Fri May 10 18:14:18 2013

GO:0005506 "iron ion binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
COG0053	304	COG0053, MMT1, Predicted Co/Zn/Cd cation transport	5e-13
TIGR01297	268	TIGR01297, CDF, cation diffusion facilitator famil	2e-11
pfam01545	273	pfam01545, Cation_efflux, Cation efflux family	3e-10
PRK09509	299	PRK09509, fieF, ferrous iron efflux protein F; Rev	0.003

>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 6   QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           +G H LR R++GS +++DVHI VDP  S+  AH + + V  +I K  P+V++V IH++P 
Sbjct: 231 KGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPL 290

Length = 304

>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 6   QGCHRLRGRRAGSS-LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           +G H L   R G   L+LDVH+VVDP   +  AH +   +  +I K HP +  V I ++P
Sbjct: 208 KGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEP 267

Query: 65  A 65
            
Sbjct: 268 C 268

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence [Transport and binding proteins, Cations and iron carrying compounds]. Length = 268

>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 20/60 (33%), Positives = 36/60 (60%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
           G H LR  ++G   ++D+HI VDP  +V  AH + + +   + +  P +++V IH++PA 
Sbjct: 211 GVHDLRVWKSGPKYFVDIHIEVDPDLTVEEAHEIADEIERALKEKFPGIADVTIHVEPAP 270

Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. Length = 273

>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 6   QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
            G H LR R++G + ++ +H+ ++    +  AH + + V   + +  P  S+V IH DP
Sbjct: 229 SGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG-SDVIIHQDP 286

Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
COG0053	304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	99.46
TIGR01297	268	CDF cation diffusion facilitator family transporte	99.34
PRK09509	299	fieF ferrous iron efflux protein F; Reviewed	99.34
PF01545	284	Cation_efflux: Cation efflux family; InterPro: IPR	99.11
PRK03557	312	zinc transporter ZitB; Provisional	99.0
PRK09509	299	fieF ferrous iron efflux protein F; Reviewed	98.69
TIGR01297	268	CDF cation diffusion facilitator family transporte	98.6
COG0053	304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	98.55
PF01545	284	Cation_efflux: Cation efflux family; InterPro: IPR	98.35
PRK03557	312	zinc transporter ZitB; Provisional	97.88
KOG1485	412	consensus Mitochondrial Fe2+ transporter MMT1 and	97.86
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	96.65
KOG1482	379	consensus Zn2+ transporter [Inorganic ion transpor	96.09
KOG1485	412	consensus Mitochondrial Fe2+ transporter MMT1 and	94.63
PF00873	1021	ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010	94.17
PRK09579	1017	multidrug efflux protein; Reviewed	93.5
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	93.32
KOG1483	404	consensus Zn2+ transporter ZNT1 and related Cd2+/Z	90.69
PRK10555	1037	aminoglycoside/multidrug efflux system; Provisiona	90.46
COG3696	1027	Putative silver efflux pump [Inorganic ion transpo	90.46
TIGR00915	1044	2A0602 The (Largely Gram-negative Bacterial) Hydro	90.1
PRK09577	1032	multidrug efflux protein; Reviewed	88.84
KOG1482	379	consensus Zn2+ transporter [Inorganic ion transpor	88.22
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	88.12
TIGR00914	1051	2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu	85.96
PRK10503	1040	multidrug efflux system subunit MdtB; Provisional	85.71
PRK10614	1025	multidrug efflux system subunit MdtC; Provisional	84.65
PRK15127	1049	multidrug efflux system protein AcrB; Provisional	84.55

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=99.46  E-value=2.5e-13  Score=115.64  Aligned_cols=70  Identities=37%  Similarity=0.643  Sum_probs=65.8

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCC
Q 030287            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP   71 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~   71 (180)
                      .|||.++|++|+|+.|+++++|+|++||++||+.|+|+|++++|++|++++|.+.+++||+||.......
T Consensus       227 ~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~  296 (304)
T COG0053         227 VPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEE  296 (304)
T ss_pred             CCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccc
Confidence            5899999999999999999999999999999999999999999999999999889999999998765443

>TIGR01297 CDF cation diffusion facilitator family transporter

Probab=99.34  E-value=4e-12  Score=105.28  Aligned_cols=64  Identities=36%  Similarity=0.648  Sum_probs=61.6

Q ss_pred             CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 030287            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA   65 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~   65 (180)
                      .|||.++|++|+|++|+ .+++++|+++|+++|+.|+|++++++|+++++++|++.+++||+||.
T Consensus       204 ~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~  268 (268)
T TIGR01297       204 IPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC  268 (268)
T ss_pred             CCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999999999999999 99999999999999999999999999999999999989999999994

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.

>PRK09509 fieF ferrous iron efflux protein F; Reviewed

Probab=99.34  E-value=5.2e-12  Score=107.03  Aligned_cols=65  Identities=26%  Similarity=0.528  Sum_probs=61.7

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~   67 (180)
                      +|||.++|++|+|++|+..++++|+++|+++|+.|+|+|++++|++|++++|. .+++||+||++.
T Consensus       225 ~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~-~~v~ihveP~~~  289 (299)
T PRK09509        225 WPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG-SDVIIHQDPCSV  289 (299)
T ss_pred             CCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCCCC
Confidence            58999999999999999999999999999999999999999999999999996 689999999763

>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt

Probab=99.11  E-value=5.5e-10  Score=93.06  Aligned_cols=66  Identities=29%  Similarity=0.489  Sum_probs=62.5

Q ss_pred             CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~   67 (180)
                      .|||.++|++++|++|+ ..++++|+.+++++|++++|++.+++++.++++++++.+++||++|...
T Consensus       217 ~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~  283 (284)
T PF01545_consen  217 VPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE  283 (284)
T ss_dssp             TSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred             CCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence            48999999999999999 9999999999999999999999999999999999999999999999764

These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.

>PRK03557 zinc transporter ZitB; Provisional

Probab=99.00  E-value=1.7e-09  Score=92.35  Aligned_cols=61  Identities=10%  Similarity=0.165  Sum_probs=56.9

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 030287            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~   66 (180)
                      +|||.++|++|+|++|+.+++++|+++++++   ++|+|+++++++|+++++ +.+++||+||..
T Consensus       233 ~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~-i~~vtIh~e~~~  293 (312)
T PRK03557        233 IPEVRNVHHVHVWMVGEKPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQ-IEHATIQMEYQP  293 (312)
T ss_pred             CCCceeEEEEEEEEeCCeEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCC-CCEEEEEeccCc
Confidence            6999999999999999999999999999886   679999999999999987 789999999974

>PRK09509 fieF ferrous iron efflux protein F; Reviewed

Probab=98.69  E-value=2.1e-07  Score=78.91  Aligned_cols=79  Identities=11%  Similarity=0.278  Sum_probs=68.3

Q ss_pred             HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCC
Q 030287           96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP  175 (180)
Q Consensus        96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~  175 (180)
                      ..+.+++.+.+ +|...++++++++..+....+++++.+|+++++.++|++++++|+.+++++|.. .|.||+||..+++
T Consensus       214 ~~~~I~~~i~~-~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~-~v~ihveP~~~~~  291 (299)
T PRK09509        214 ERQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGS-DVIIHQDPCSVVP  291 (299)
T ss_pred             HHHHHHHHHHh-CCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCC-EEEEEeCCCCCCC
Confidence            44555555556 788889999999999988999999999999999999999999999999999976 5999999977665


Q ss_pred             C
Q 030287          176 E  176 (180)
Q Consensus       176 ~  176 (180)
                      +
T Consensus       292 ~  292 (299)
T PRK09509        292 R  292 (299)
T ss_pred             c
Confidence            4

>TIGR01297 CDF cation diffusion facilitator family transporter

Probab=98.60  E-value=3.3e-07  Score=75.87  Aligned_cols=66  Identities=27%  Similarity=0.498  Sum_probs=61.1

Q ss_pred             hhccCCCCCceeeEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEec
Q 030287          104 LSTKFPEKMGVERITHHLLHG-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL  170 (180)
Q Consensus       104 ~~~~~~~~~~v~~v~~h~~~~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~  170 (180)
                      +.+ .+...++++++++..+. +..+++++.+|++++++++|++++++|++++++.|++..|.||+||
T Consensus       201 i~~-~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep  267 (268)
T TIGR01297       201 ILS-IPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEP  267 (268)
T ss_pred             Hhc-CCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            345 67788999999999997 8999999999999999999999999999999999999999999997

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=98.55  E-value=7.6e-07  Score=75.99  Aligned_cols=80  Identities=24%  Similarity=0.360  Sum_probs=69.6

Q ss_pred             HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCC
Q 030287           96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP  175 (180)
Q Consensus        96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~  175 (180)
                      ..+.++..+.+ .+....+++++.++.+.+..+++++.+|+++++.++|++++++|+.+++..|+...|.||.||-.+-.
T Consensus       216 ~~~~i~~~i~~-~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~  294 (304)
T COG0053         216 DLEKIRAIILS-VPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKE  294 (304)
T ss_pred             HHHHHHHHHhc-CCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence            44444555556 67788999999999999999999999999999999999999999999999999999999999976554


Q ss_pred             C
Q 030287          176 E  176 (180)
Q Consensus       176 ~  176 (180)
                      +
T Consensus       295 ~  295 (304)
T COG0053         295 E  295 (304)
T ss_pred             c
Confidence            3

>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt

Probab=98.35  E-value=6.1e-06  Score=68.69  Aligned_cols=77  Identities=18%  Similarity=0.414  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhhccCCCCCceeeEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287           95 DIDAVVYNTLSTKFPEKMGVERITHHLLHG-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR  172 (180)
Q Consensus        95 ~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~  172 (180)
                      +..+.++..+++ .+.+..++++++...+. ...+++++.+++++++++++++++++++.+++++|++..|.||+||..
T Consensus       205 ~~~~~i~~~i~~-~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~  282 (284)
T PF01545_consen  205 ELVEKIRRIIES-VPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDE  282 (284)
T ss_dssp             HHHHHHHHHHHH-TSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECG
T ss_pred             cchhHHHHhhcc-CCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecC
Confidence            444555666656 78889999999999998 999999999999999999999999999999999999999999999874

These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.

>PRK03557 zinc transporter ZitB; Provisional

Probab=97.88  E-value=0.00013  Score=62.30  Aligned_cols=63  Identities=13%  Similarity=0.257  Sum_probs=55.3

Q ss_pred             hccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287          105 STKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR  172 (180)
Q Consensus       105 ~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~  172 (180)
                      .. +|...++|++++.++++...+++++.++++.   +++++++++++.++++++ +..|.||+|+..
T Consensus       231 ~~-~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~-i~~vtIh~e~~~  293 (312)
T PRK03557        231 RE-IPEVRNVHHVHVWMVGEKPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQ-IEHATIQMEYQP  293 (312)
T ss_pred             hc-CCCceeEEEEEEEEeCCeEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCC-CCEEEEEeccCc
Confidence            34 7888999999999999899999999999876   578999999999988774 899999999873

>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=97.86  E-value=4.7e-05  Score=66.98  Aligned_cols=65  Identities=34%  Similarity=0.588  Sum_probs=60.3

Q ss_pred             CCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCC
Q 030287            3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQ   68 (180)
Q Consensus         3 ~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~   68 (180)
                      +.+..++.+|+..+|..+++++|+.+|++|++.++|+|.+.+++.|.. +|++.+.+||+|-....
T Consensus       339 ~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~-l~ever~fvh~d~e~~h  403 (412)
T KOG1485|consen  339 KLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIEL-LPEVERAFVHIDYEFLH  403 (412)
T ss_pred             CccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhh-cchheeeeeecCccccC
Confidence            467899999999999999999999999999999999999999999986 99999999999876654

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=96.65  E-value=0.0066  Score=51.74  Aligned_cols=60  Identities=17%  Similarity=0.252  Sum_probs=51.6

Q ss_pred             CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 030287            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA   65 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~   65 (180)
                      .|||.++||+.++..++ .....+|+.+++..+-++   +.+.+++.+.++++ +.++||++|+.
T Consensus       234 ~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~---~~~~~~~~l~~~~~-I~hvTiQ~e~~  294 (296)
T COG1230         234 IPGVASVHDLHVWSITGGEHALTLHVVVDEVADADA---ALDQIVRRLLEKYG-IEHVTIQLETE  294 (296)
T ss_pred             CCCccceeecccCCCCCCceeEEEEEEecCccchHH---HHHHHHHHHhhhcC-cceEEEEecCC
Confidence            58999999999999976 899999999995544444   88999999999887 79999999874

>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]

Probab=96.09  E-value=0.023  Score=49.69  Aligned_cols=64  Identities=23%  Similarity=0.288  Sum_probs=56.4

Q ss_pred             CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCC
Q 030287            2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF   69 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~   69 (180)
                      .+||.+||+|+++.-+- +....+|+.++++   +++.++-+++.+.|+++|. +..+||.+||.....
T Consensus       306 iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~-~~~vTiQie~~~~~~  370 (379)
T KOG1482|consen  306 IEGVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYG-ISHVTIQIEPYTEEM  370 (379)
T ss_pred             hcceeEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcc-eEEEEEEecCCccch
Confidence            58999999999999986 8889999999955   6677889999999999997 799999999987653

>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=94.63  E-value=0.25  Score=43.89  Aligned_cols=75  Identities=17%  Similarity=0.219  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEec
Q 030287           94 LDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL  170 (180)
Q Consensus        94 ~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~  170 (180)
                      +.++......|+. -.....+..+...+++....|++++++|+++++..||++..-+.+.+-. .|.+.|.-+|++-
T Consensus       325 e~L~~~~~~~l~~-~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~-l~ever~fvh~d~  399 (412)
T KOG1485|consen  325 EYLEIITYLILQH-GKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIEL-LPEVERAFVHIDY  399 (412)
T ss_pred             HHHHHHHHHHHhh-cCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhh-cchheeeeeecCc
Confidence            4455555555555 3455678888889999999999999999999999999999999877655 9999999999764

>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []

Probab=94.17  E-value=2.5  Score=41.68  Aligned_cols=148  Identities=16%  Similarity=0.202  Sum_probs=87.8

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCC-CCCcccc--cccccccCCCCCCCccHHHHH
Q 030287           21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF-SPSTMDQ--LGLEGCKAHSSNICVDDLDID   97 (180)
Q Consensus        21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~i~   97 (180)
                      .+.++++.|++.|+++..++++++|+.|+ +.|++.++...+--..... .......  ..+..... .........++.
T Consensus       560 ~~~v~v~lp~Gtsle~t~~~~~~ve~~L~-~~p~V~~v~s~vG~~~~~~~~~~~~~~~~i~L~~~~~-r~~~~~~~~~l~  637 (1021)
T PF00873_consen  560 EFYVSVELPPGTSLEETDAIVKQVEDILK-EDPEVKSVSSRVGRGFSGFNAGPNSASIFINLKPKSE-RPGSKESIDELI  637 (1021)
T ss_dssp             EEEEEEEESTTC-HHHHHHHHHHHHHHHH-TTTTEEEEEEEESECSST--ECTTEEEEEEEE--CTC-S-SCCCSHHHHH
T ss_pred             ceEEEEeeccCchHHHHHHHHHHHHHHHH-hhhhhhccceEeccccccccCCCcceEEEEEEeeccc-ccccchhHHHHH
Confidence            57899999999999999999999999988 6898888876663211100 0000000  00000000 000122456777


Q ss_pred             HHHHHhhhccCCCCCceeeEEEEEe--------CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287           98 AVVYNTLSTKFPEKMGVERITHHLL--------HGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR  169 (180)
Q Consensus        98 ~~l~~~~~~~~~~~~~v~~v~~h~~--------~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e  169 (180)
                      +.++..+.+ ++..    .+.....        .++....+.+.+-++ ..++..+++.++++.+ ++.|++..  +...
T Consensus       638 ~~lr~~l~~-~~~~----~~~~~~~~~~~~~~~~~g~~~~i~v~i~G~-d~~~L~~~a~~v~~~l-~~~pgv~d--v~~~  708 (1021)
T PF00873_consen  638 DELRQKLKQ-LPGA----RVFVFSPPDLRGLGSGPGSSAPIQVEIYGD-DLEELRKAAEKVKAKL-AEIPGVTD--VRDD  708 (1021)
T ss_dssp             HHHHHHCCT-STSS----EEEEEEHCSSCCCCSSSSEEEEEEEECSSS-CHHHHHHHHHHHHHHH-HHSTTEEE--EEES
T ss_pred             HHHHHhhhh-CCCc----ceeccccccccccccccccceeeeeccCCC-CHHHHHHHHHHHHHHH-HhCCCccc--cccc
Confidence            777777665 6542    2222221        134566666666654 3467889999997655 55998844  4555


Q ss_pred             cCCCCCCCcc
Q 030287          170 LGRPIPEYQL  179 (180)
Q Consensus       170 ~~~~~~~~~~  179 (180)
                      .+.+-|+|++
T Consensus       709 ~~~~~~el~i  718 (1021)
T PF00873_consen  709 WEDGQPELRI  718 (1021)
T ss_dssp             SSSBEEEEEE
T ss_pred             ccccCcceEE
Confidence            7777777765

The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....

>PRK09579 multidrug efflux protein; Reviewed

Probab=93.50  E-value=1.8  Score=42.84  Aligned_cols=143  Identities=10%  Similarity=0.083  Sum_probs=80.4

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe-eCCCCCCCCcccccccccccCCCCCCCccHHHHHHH
Q 030287           21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID-PAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAV   99 (180)
Q Consensus        21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHid-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   99 (180)
                      .+.++++.|++.|+++..+..+++|+.+++ .|++......+- +.... ...   .+.+..    .........++.+.
T Consensus       557 ~~~v~~~~p~gt~l~~t~~~~~~ie~~l~~-~p~v~~~~~~~G~~~~~~-~~~---~i~l~~----~~~r~~~~~~~~~~  627 (1017)
T PRK09579        557 IIFMMSSSPQPANLDYLNAYTDEFTPIFKS-FPEYYSSFQINGFNGVQS-GIG---GFLLKP----WNERERTQMELLPL  627 (1017)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEEEeccCCCcc-ceE---EEEecc----hHhccCCHHHHHHH
Confidence            346789999999999999999999999874 677655432221 10000 000   000000    00001123567777


Q ss_pred             HHHhhhccCCCCCceeeEEEE--EeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCCC
Q 030287          100 VYNTLSTKFPEKMGVERITHH--LLHG-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPE  176 (180)
Q Consensus       100 l~~~~~~~~~~~~~v~~v~~h--~~~~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~~  176 (180)
                      ++.-+.. +|..   ..+.+-  .+.| +-...+.+.+..+-..+.-.+++.++++.++ +.|++..|...  .+.+-|+
T Consensus       628 l~~~l~~-~p~~---~~~~~~~~~~~g~g~~~~v~i~i~gg~d~~~L~~~a~~l~~~l~-~~~g~~~v~~~--~~~~~~e  700 (1017)
T PRK09579        628 VQAKLEE-IPGL---QIFGFNLPSLPGTGEGLPFQFVINTANDYESLLQVAQRVKQRAQ-ESGKFAFLDID--LAFDKPE  700 (1017)
T ss_pred             HHHHHhc-CCCc---EEEeecCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-cCCCcEEeecc--ccCCCce
Confidence            7776655 6642   212221  1212 1111245555443355678899999976654 58988777766  5556777


Q ss_pred             Ccc
Q 030287          177 YQL  179 (180)
Q Consensus       177 ~~~  179 (180)
                      +++
T Consensus       701 l~i  703 (1017)
T PRK09579        701 VVV  703 (1017)
T ss_pred             EEE
Confidence            765

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=93.32  E-value=1.7  Score=30.45  Aligned_cols=63  Identities=13%  Similarity=0.091  Sum_probs=52.7

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCC--HHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 030287            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSS--VSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~s--v~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~   66 (180)
                      +|++.+-..+.+.+-|..=.+.+.+++.+..+  ..+..+++++++++|++.++  ..+.|++-|..
T Consensus        16 ~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg--v~~~V~lv~~g   80 (96)
T PF14535_consen   16 FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLG--VRPEVELVPPG   80 (96)
T ss_dssp             STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS--S-EEEEEE-TT
T ss_pred             CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC--ceEEEEEECCC
Confidence            58888888999999999888999999999874  57899999999999999998  56777777654

>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=90.69  E-value=0.87  Score=40.27  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=44.1

Q ss_pred             CCCceeeeeEEEEee-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 030287            2 SLSLQGCHRLRGRRA-GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID   63 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~-G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHid   63 (180)
                      +|||..||++.++.. |.++.+.+||.+..--.-.   ++++.|++-+.+ ++ +-.+||..|
T Consensus       311 ~~gv~~vh~lhvWqL~~~r~IAt~Hi~~~~p~~~~---~~a~~ir~~fh~-~G-Ihs~TiqPe  368 (404)
T KOG1483|consen  311 VPGVISVHDLHVWQLAGSRIIATIHIQIQNPKEYM---KIAEKIRSYFHD-QG-IHSTTIQPE  368 (404)
T ss_pred             CcceeeeeeeeeeeeccceEEEEEEEEecCcHHHH---HHHHHHHHHHHh-cC-Ccceeeccc
Confidence            699999999999998 6699999999997542222   888888888875 55 566765544

>PRK10555 aminoglycoside/multidrug efflux system; Provisional

Probab=90.46  E-value=11  Score=37.58  Aligned_cols=149  Identities=11%  Similarity=0.078  Sum_probs=83.0

Q ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh-CCCeeEEEEEEeeCCCC-CCCCccccc--ccccccCCCCCCCccHHH
Q 030287           20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS-HPEVSEVFIHIDPAYFQ-FSPSTMDQL--GLEGCKAHSSNICVDDLD   95 (180)
Q Consensus        20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~-~~~v~~v~IHidP~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~   95 (180)
                      -.+.++++.|++.|+++..+.+.++|+.|++. .|++..+...+-..... ...  .-++  .+....... .......+
T Consensus       569 ~~~~v~~~~p~gt~l~~t~~~~~~~e~~l~~~~~~~v~~~~~~~G~~~~~~~~~--~~~~~v~l~~~~~r~-~~~~~~~~  645 (1037)
T PRK10555        569 GMFTTSVQLPSGSTQQQTLKVVEKVEKYYFTHEKDNVMSVFATVGSGPGGNGQN--VARMFIRLKDWDERD-SKTGTSFA  645 (1037)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEeccCCCCCCCc--eEEEEEEecCHHhCC-CccCCHHH
Confidence            34578999999999999999999999999863 57777766555321000 000  0000  000000000 00012346


Q ss_pred             HHHHHHHhhhccCCCCCceeeEEEE---Ee-C--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287           96 IDAVVYNTLSTKFPEKMGVERITHH---LL-H--GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR  169 (180)
Q Consensus        96 i~~~l~~~~~~~~~~~~~v~~v~~h---~~-~--~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e  169 (180)
                      +.+.+++.+.. +|..    ++..-   .+ +  +.--+.+.+.=+++...+.-.+++.++++.++ +.|++..|...  
T Consensus       646 ~~~~l~~~l~~-~p~~----~~~~~~~~~~~~~g~~~~v~v~l~g~~g~d~~~L~~~a~~l~~~l~-~~~gv~~v~~~--  717 (1037)
T PRK10555        646 IIERATKAFNK-IKEA----RVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAA-KNPELTRVRHN--  717 (1037)
T ss_pred             HHHHHHHHHhc-CCCc----EEEeeccccCCCCCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEecC--
Confidence            66677777755 6542    11111   12 1  12224444443433456677889999986665 48988877765  


Q ss_pred             cCCCCCCCcc
Q 030287          170 LGRPIPEYQL  179 (180)
Q Consensus       170 ~~~~~~~~~~  179 (180)
                      ....-|++++
T Consensus       718 ~~~~~~~l~i  727 (1037)
T PRK10555        718 GLDDSPQLQI  727 (1037)
T ss_pred             CcCCCceEEE
Confidence            4455666654

>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]

Probab=90.46  E-value=2.5  Score=41.31  Aligned_cols=143  Identities=17%  Similarity=0.168  Sum_probs=87.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCC----CcccccccccccCCCCCCCc---cHHHH
Q 030287           24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP----STMDQLGLEGCKAHSSNICV---DDLDI   96 (180)
Q Consensus        24 ~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~i   96 (180)
                      ......|..|++++-+....+++.++ ++|++..|.-..--.+.....    |...-..+..     -..++   .++++
T Consensus       562 ~~~~~~Pg~Sl~~~~~m~~~~e~~ik-~~PeV~~V~~k~GrAe~~tD~~~~n~~et~I~Lkp-----~~eW~~~~t~~~l  635 (1027)
T COG3696         562 YMPLTIPGVSLDEALRMLQAIERAIK-KFPEVERVFGKTGRAETATDPAPLNMIETFIELKP-----QEEWKDKKTRDEL  635 (1027)
T ss_pred             eeeccCCCCCHHHHHHHHHHHHHHHh-cCcchheeeeccccCCCCCCCCCcccceeeEEecc-----hhhCCCcccHHHH
Confidence            45677889999999999999999999 799998887655333221111    1100001110     01122   47888


Q ss_pred             HHHHHHhhhccCCCCCceeeEEE----EEeC---CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287           97 DAVVYNTLSTKFPEKMGVERITH----HLLH---GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR  169 (180)
Q Consensus        97 ~~~l~~~~~~~~~~~~~v~~v~~----h~~~---~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e  169 (180)
                      .+++++.+++ +|..   ...-.    |.++   .++.-++-+.+=+ -.+++-.+++++++ ++++..|+..  ++.+|
T Consensus       636 ie~l~~~~~~-lpG~---~~~~tqPI~~R~delltGVrsdvaIKvfG-~Dl~~L~~la~qI~-~~lk~v~Ga~--dv~~E  707 (1027)
T COG3696         636 IEELRKTLEQ-LPGL---ANSFTQPIRMRIDELLTGVRSDLAIKVFG-DDLAELNELAEQIE-EVLKTVPGAV--DVLAE  707 (1027)
T ss_pred             HHHHHHHHHh-CCCc---ccccccchhHHHHHHHhccccceEEEEeC-CCHHHHHHHHHHHH-HHHhcCcchh--hheee
Confidence            8888888877 7641   11111    2222   2333333444433 34467889999997 5566688765  45667


Q ss_pred             cCCCCCCCccC
Q 030287          170 LGRPIPEYQLQ  180 (180)
Q Consensus       170 ~~~~~~~~~~~  180 (180)
                      ...+.|++|.+
T Consensus       708 ~~~g~~~l~I~  718 (1027)
T COG3696         708 RQEGGPYLQID  718 (1027)
T ss_pred             ecCCceeEEEe
Confidence            99999988853

>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family

Probab=90.10  E-value=7.9  Score=38.54  Aligned_cols=151  Identities=10%  Similarity=0.050  Sum_probs=81.9

Q ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhC-CCeeEEEEEEeeCCC-CCCCCccccc--ccccccCCCCCCCccHH
Q 030287           19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSH-PEVSEVFIHIDPAYF-QFSPSTMDQL--GLEGCKAHSSNICVDDL   94 (180)
Q Consensus        19 ~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~-~~v~~v~IHidP~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~   94 (180)
                      .-.+.++++.|++.|+++..+++.++|+.|.+.- |++..+...+-.... ....  ..++  .+..... .........
T Consensus       569 ~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l~~~~~~~v~~~~~~~G~~~~~~~~~--~~~~~v~l~~~~~-r~~~~~~~~  645 (1044)
T TIGR00915       569 QGVFMTIVQLPAGATAERTQKVLAQVEKYLLAKEKANVESVFTVNGFSFAGRGQN--SGMAFIRLKDWEE-RTGKENSVF  645 (1044)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeeEEEEEecccCCCCCcc--eEEEEEEecCHHh-CCCccCCHH
Confidence            3456788899999999999999999999998643 567666654432100 0000  0000  0000000 000011345


Q ss_pred             HHHHHHHHhhhccCCCCCceeeEEEE--Ee-C--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287           95 DIDAVVYNTLSTKFPEKMGVERITHH--LL-H--GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR  169 (180)
Q Consensus        95 ~i~~~l~~~~~~~~~~~~~v~~v~~h--~~-~--~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e  169 (180)
                      ++.+.++..+.+ +|...   .+.+-  .+ +  +.--+.+.+.=+.+-..+...+++.++++.+ ++.|++..|...  
T Consensus       646 ~i~~~~~~~l~~-~p~~~---~~~~~~~~~~~~g~~~~i~i~l~g~~G~d~~~L~~~a~~l~~~l-~~~pg~~~v~~~--  718 (1044)
T TIGR00915       646 AIAGRATGHFSQ-IKDAM---VIAFNPPAILELGNATGFDFFLQDRAGLGHEALMQARNQLLGLA-AQNPALTRVRPN--  718 (1044)
T ss_pred             HHHHHHHHHHhc-CCCce---eeeecCCCCCCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHH-hcCCCeEEeecc--
Confidence            677777777766 66531   11111  11 1  1112333433222345567788999997665 459988776555  


Q ss_pred             cCCCCCCCcc
Q 030287          170 LGRPIPEYQL  179 (180)
Q Consensus       170 ~~~~~~~~~~  179 (180)
                      ....-||+++
T Consensus       719 ~~~~~~~~~i  728 (1044)
T TIGR00915       719 GLEDEPQFKL  728 (1044)
T ss_pred             ccCCCceEEE
Confidence            5556677654

This family is one of several subfamilies within the scope of pfam model pfam00873.

>PRK09577 multidrug efflux protein; Reviewed

Probab=88.84  E-value=16  Score=36.32  Aligned_cols=149  Identities=11%  Similarity=0.053  Sum_probs=80.3

Q ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe-eCCCCCCCCccccc--ccccccCCCCCCCccHHHH
Q 030287           20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID-PAYFQFSPSTMDQL--GLEGCKAHSSNICVDDLDI   96 (180)
Q Consensus        20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHid-P~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i   96 (180)
                      -.+.++++.|++.|+++..++..++|+.|++ .|++..+....- +.......  .-++  .+..... .........++
T Consensus       567 ~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~-~~~v~~~~~~~g~~~~~~~~~--~~~~~v~l~~~~~-r~~~~~~~~~i  642 (1032)
T PRK09577        567 GNFMVMVIRPQGTPLAETMQSVREVESYLRR-HEPVAYTFALGGFNLYGEGPN--GGMIFVTLKDWKE-RKAARDHVQAI  642 (1032)
T ss_pred             ceEEEEEEcCCCCCHHHHHHHHHHHHHHHhh-CCCceEEEEEeccCCCCCCcc--eEEEEEEecChhh-ccccccCHHHH
Confidence            3457889999999999999999999999975 577766643321 10000000  0000  0000000 00001123556


Q ss_pred             HHHHHHhhhccCCCCCceeeEEEE--Ee-C--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287           97 DAVVYNTLSTKFPEKMGVERITHH--LL-H--GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG  171 (180)
Q Consensus        97 ~~~l~~~~~~~~~~~~~v~~v~~h--~~-~--~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~  171 (180)
                      .+.++..++. +|..   ..+.+-  .+ +  ++-.+.+.+.-+...+.+.-.+++.++++++ ++.|++..|...  ..
T Consensus       643 ~~~l~~~~~~-~p~~---~~~~~~~~~~~~~g~~~~i~i~i~g~~~~d~~~l~~~a~~l~~~l-~~~~g~~~v~~~--~~  715 (1032)
T PRK09577        643 VARINERFAG-TPNT---TVFAMNSPALPDLGSTSGFDFRLQDRGGLGYAAFVAAREQLLAEG-AKDPALTDLMFA--GT  715 (1032)
T ss_pred             HHHHHHHhcc-CCCc---eEEeeccccccCCCCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHH-hcCCCeEEeecc--cc
Confidence            6677666655 6542   111111  11 1  1222444555444345667788899997665 558888655444  55


Q ss_pred             CCCCCCcc
Q 030287          172 RPIPEYQL  179 (180)
Q Consensus       172 ~~~~~~~~  179 (180)
                      .+-|++++
T Consensus       716 ~~~~~~~i  723 (1032)
T PRK09577        716 QDAPQLKL  723 (1032)
T ss_pred             CCCceEEE
Confidence            66666654

>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]

Probab=88.22  E-value=4.1  Score=35.91  Aligned_cols=62  Identities=19%  Similarity=0.285  Sum_probs=46.7

Q ss_pred             CCCCCceeeEEEEEeC-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCC
Q 030287          108 FPEKMGVERITHHLLH-GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRP  173 (180)
Q Consensus       108 ~~~~~~v~~v~~h~~~-~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~  173 (180)
                      .+.+.+||++.+=-+- |+..++.++.++++.   ++.++.++....+++.+. +..|++++|+..+
T Consensus       306 iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~a---d~~~vL~~~~~~i~~~~~-~~~vTiQie~~~~  368 (379)
T KOG1482|consen  306 IEGVKAVHDLHIWSITVGKVALSVHLAIDSEA---DAEEVLDEARSLIKRRYG-ISHVTIQIEPYTE  368 (379)
T ss_pred             hcceeEEEEEEEEEEecCceEEEEEEeecCCC---CHHHHHHHHHHHHHhhcc-eEEEEEEecCCcc
Confidence            4555555555554443 899999999998655   578899999888888665 8999999987643

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=88.12  E-value=3.9  Score=26.84  Aligned_cols=47  Identities=28%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             ceeeEEEEEeCCeEEEEEEEEeC-CCCChhHHHHHHHHHHHHHHHHCCCccEEEE
Q 030287          113 GVERITHHLLHGKILLEVEVSMS-PDTSIRDAMKVAEEAEKEIMKAAPNVFQVSV  166 (180)
Q Consensus       113 ~v~~v~~h~~~~~~~v~~d~~v~-~~~~i~~ah~ia~~le~~i~~~~p~~~~V~i  166 (180)
                      -+.++.+..  |++.+  .+.++ +.++  ....+..+++++++ ..|++..|.|
T Consensus        25 ~V~~i~i~~--~~V~v--~l~l~~~~~~--~~~~l~~~i~~~l~-~l~gv~~V~V   72 (72)
T PF01883_consen   25 MVRDISIEG--GKVSV--SLELPTPACP--AAEPLREEIREALK-ALPGVKSVKV   72 (72)
T ss_dssp             SEEEEEECT--CEEEE--EE--SSTTHT--THHHHHHHHHHHHH-TSTT-SEEEE
T ss_pred             CeeEEEEEC--CEEEE--EEEECCCCch--HHHHHHHHHHHHHH-hCCCCceEeC
Confidence            355555544  66655  56666 4565  35689999988877 7999988875

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium)

Probab=85.96  E-value=18  Score=35.96  Aligned_cols=150  Identities=17%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC---CC-CCCCcccccccccccCCCCCCCccHHHH
Q 030287           21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY---FQ-FSPSTMDQLGLEGCKAHSSNICVDDLDI   96 (180)
Q Consensus        21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i   96 (180)
                      .+.+.+..++..|+++..++...+|+.+++ .|++.++...+-...   .. .+....--..+..... .........++
T Consensus       570 ~~~v~~~~~~Gts~e~t~~~~~~vE~~l~~-~~~v~~~~s~~g~~~~~~~~~~~~~a~i~v~l~~~~~-~~~~~~~~~~~  647 (1051)
T TIGR00914       570 DLAYQALRIPGTSLAQSVAMQQTLEKLIKS-FPEVARVFAKTGTAEIATDPMPPNASDTYIILKPESQ-WPEGKKTKEDL  647 (1051)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEEeecCCccCCCCCCCcceEEEEEEecccc-ccccCCCHHHH
Confidence            455667789999999999999999999985 677777664432110   00 0000000000000000 00001134566


Q ss_pred             HHHHHHhhhccCCCCC-ceeeEEEEE---eC-C-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEec
Q 030287           97 DAVVYNTLSTKFPEKM-GVERITHHL---LH-G-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL  170 (180)
Q Consensus        97 ~~~l~~~~~~~~~~~~-~v~~v~~h~---~~-~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~  170 (180)
                      .+.++..+.+ +|... .+..-..-.   +. | +--+  .+.+-++ +.++..++++++++.+ +..|++..|....+ 
T Consensus       648 ~~~l~~~l~~-~p~~~~~~~~~~~~~~~~~~~g~~~~i--~i~l~G~-d~~~L~~~a~~v~~~l-~~~pgv~~v~~~~~-  721 (1051)
T TIGR00914       648 IEEIQEATVR-IPGNNYEFTQPIQMRFNELISGVRSDV--AVKVFGD-DLDDLDATAEKISAVL-KGVPGAADVKVEQT-  721 (1051)
T ss_pred             HHHHHHHHhh-CCCcceecccChhhhHHhhccCCCCCe--EEEEECC-CHHHHHHHHHHHHHHH-hcCCCceeeecccc-
Confidence            6677766655 65421 011000000   11 1 2223  3444443 4566788999997665 45999998887644 


Q ss_pred             CCCCCCCcc
Q 030287          171 GRPIPEYQL  179 (180)
Q Consensus       171 ~~~~~~~~~  179 (180)
                       ..-||+++
T Consensus       722 -~~~~e~~i  729 (1051)
T TIGR00914       722 -TGLPYLTV  729 (1051)
T ss_pred             -CCCceEEE
Confidence             34456654

This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.

>PRK10503 multidrug efflux system subunit MdtB; Provisional

Probab=85.71  E-value=22  Score=35.47  Aligned_cols=146  Identities=10%  Similarity=0.022  Sum_probs=83.1

Q ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe-eCCCCCCCCccccc--ccccccCCCCCCCccHHH
Q 030287           19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID-PAYFQFSPSTMDQL--GLEGCKAHSSNICVDDLD   95 (180)
Q Consensus        19 ~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHid-P~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   95 (180)
                      .-.+.+.++.|++.|+++..++..++|+.+++ .|++..+..-+- ........  .-++  .+..    .........+
T Consensus       567 ~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~-~~~v~~~~~~~G~~~~~~~~~--~~~~~v~l~~----~~~r~~~~~~  639 (1040)
T PRK10503        567 NGIIQGTLQAPQSSSFANMAQRQRQVADVILQ-DPAVQSLTSFVGVDGTNPSLN--SARLQINLKP----LDERDDRVQK  639 (1040)
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHHHHHHHhh-CCCeEEEEEEeccCCCCCCCc--eEEEEEEecc----hhhccCCHHH
Confidence            44567899999999999999999999999975 688777765543 10000000  0000  0000    0001112456


Q ss_pred             HHHHHHHhhhccCCCCCceeeEEEE--Ee-C--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEec
Q 030287           96 IDAVVYNTLSTKFPEKMGVERITHH--LL-H--GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL  170 (180)
Q Consensus        96 i~~~l~~~~~~~~~~~~~v~~v~~h--~~-~--~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~  170 (180)
                      +.+.++..+.+ +|... +-.-..-  .+ .  ++..+  .+.+.+ -+.++-.+.+.++++.++ ..|++..|..-  .
T Consensus       640 v~~~lr~~l~~-~p~~~-~~~~~~~~~~~~~~~~~~~v--~i~l~G-~d~~~L~~~a~~l~~~l~-~~pgv~~v~~~--~  711 (1040)
T PRK10503        640 VIARLQTAVAK-VPGVD-LYLQPTQDLTIDTQVSRTQY--QFTLQA-TSLDALSTWVPKLMEKLQ-QLPQLSDVSSD--W  711 (1040)
T ss_pred             HHHHHHHHHhc-CCCcE-EeccCCccccccCCCCCCCe--EEEEEC-CCHHHHHHHHHHHHHHHh-cCCCeEEEEcc--c
Confidence            77777777766 66421 1100001  11 1  12223  334433 356678889999976654 49999988753  6


Q ss_pred             CCCCCCCcc
Q 030287          171 GRPIPEYQL  179 (180)
Q Consensus       171 ~~~~~~~~~  179 (180)
                      +...|++++
T Consensus       712 ~~~~~e~~v  720 (1040)
T PRK10503        712 QDKGLVAYV  720 (1040)
T ss_pred             cCCCceEEE
Confidence            667777664

>PRK10614 multidrug efflux system subunit MdtC; Provisional

Probab=84.65  E-value=19  Score=35.78  Aligned_cols=147  Identities=15%  Similarity=0.071  Sum_probs=81.1

Q ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHH
Q 030287           19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDA   98 (180)
Q Consensus        19 ~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   98 (180)
                      .-.+.+.++.|++.|+++..+..+++++.+++ .|++..++..+--...+...+.   ..+..    .........++.+
T Consensus       557 ~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~-~~~V~~v~~~~g~~~~~~~~~~---v~l~~----~~~r~~~~~~i~~  628 (1025)
T PRK10614        557 TGRLMGFIQADQSISFQAMRGKLQDFMKIIRD-DPAVDNVTGFTGGSRVNSGMMF---ITLKP----LSERSETAQQVID  628 (1025)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEEEecCCCCceeEEE---EEecc----hhhccCcHHHHHH
Confidence            34456788999999999999999999999875 5777776654421000000000   00000    0001112356777


Q ss_pred             HHHHhhhccCCCCCceeeEEEE--EeCCe-EEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCC
Q 030287           99 VVYNTLSTKFPEKMGVERITHH--LLHGK-ILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP  175 (180)
Q Consensus        99 ~l~~~~~~~~~~~~~v~~v~~h--~~~~~-~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~  175 (180)
                      .+++.+.. +|... +-....-  .++|. ..-.+.+.+-++ +...-.+.+.++++.+ ++.|++..|..  ..+..-|
T Consensus       629 ~lr~~l~~-~pg~~-~~~~~~~~~~~~g~~~~~~i~i~l~G~-d~~~L~~~a~~i~~~L-~~~pgv~~v~~--~~~~~~~  702 (1025)
T PRK10614        629 RLRVKLAK-EPGAN-LFLMAVQDIRVGGRQSNASYQYTLLSD-DLAALREWEPKIRKAL-AALPELADVNS--DQQDKGA  702 (1025)
T ss_pred             HHHHHHhc-CCCcE-EEecCCcccCcCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHH-hcCCCeEEeec--CCCCCCc
Confidence            77776655 65421 1000000  11221 111233444443 4567788999997665 55898887664  4666777


Q ss_pred             CCcc
Q 030287          176 EYQL  179 (180)
Q Consensus       176 ~~~~  179 (180)
                      ||++
T Consensus       703 el~i  706 (1025)
T PRK10614        703 EMAL  706 (1025)
T ss_pred             eEEE
Confidence            7764

>PRK15127 multidrug efflux system protein AcrB; Provisional

Probab=84.55  E-value=37  Score=33.97  Aligned_cols=150  Identities=9%  Similarity=0.028  Sum_probs=78.8

Q ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh-CCCeeEEEEEEeeCCCC-CCCCccccc--ccccccCCCCCCCccHHH
Q 030287           20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS-HPEVSEVFIHIDPAYFQ-FSPSTMDQL--GLEGCKAHSSNICVDDLD   95 (180)
Q Consensus        20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~-~~~v~~v~IHidP~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~   95 (180)
                      -.+.++++.|+..|+++..++..++|+.++.+ .|++..+...+-..... ...  .-++  .+..... .........+
T Consensus       570 ~~~~v~v~~p~gt~l~~t~~~~~~ve~~l~~~~~~~v~~~~~~~G~~~~~~~~~--~~~~~v~l~~~~~-r~~~~~~~~~  646 (1049)
T PRK15127        570 GVFLTMVQLPAGATQERTQKVLNEVTDYYLTKEKNNVESVFAVNGFGFAGRGQN--TGIAFVSLKDWAD-RPGEENKVEA  646 (1049)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCCCCCCCc--eEEEEEEecCHHh-CcCcccCHHH
Confidence            35678999999999999999999999999753 47776665443210000 000  0000  0000000 0000001345


Q ss_pred             HHHHHHHhhhccCCCCCceeeEEEE--E-eC-C-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCC-ccEEEEEEe
Q 030287           96 IDAVVYNTLSTKFPEKMGVERITHH--L-LH-G-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPN-VFQVSVKLR  169 (180)
Q Consensus        96 i~~~l~~~~~~~~~~~~~v~~v~~h--~-~~-~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~-~~~V~ih~e  169 (180)
                      +.+.++..+.+ +|..   ..+.+-  . ++ | +.-+.+.+.=+.+...++-.++++++++.++ +.|+ +..|..-  
T Consensus       647 i~~~~~~~l~~-~~~~---~~~~~~~~~~~~~g~~~~v~i~v~g~~~~d~~~L~~~a~~l~~~l~-~~~g~~~~v~~~--  719 (1049)
T PRK15127        647 ITMRATRAFSQ-IKDA---MVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLGEAA-KHPDMLVGVRPN--  719 (1049)
T ss_pred             HHHHHHHHHhc-CCCc---eeeeecCCCCCCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH-hCCCceeeeecC--
Confidence            55666666655 6542   101111  1 11 2 2224344443322455678889999986665 5887 6666554  


Q ss_pred             cCCCCCCCcc
Q 030287          170 LGRPIPEYQL  179 (180)
Q Consensus       170 ~~~~~~~~~~  179 (180)
                      ....-|++++
T Consensus       720 ~~~~~~~i~i  729 (1049)
T PRK15127        720 GLEDTPQFKI  729 (1049)
T ss_pred             ccCCCceEEE
Confidence            4555566654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	180
3j1z_P	306	Inward-facing Conformation Of The Zinc Transporter		3e-04
2zzt_A	107	Crystal Structure Of The Cytosolic Domain Of The Ca		5e-04

>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip Revealed By Cryo-electron Microscopy Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
           G H LR R+AG ++++  H+ +D   S++ AH + +    ++ K+  E +EV IH DP  
Sbjct: 232 GLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRV-KAAFEDAEVIIHQDPV- 289
Query: 67  FQFSPST 73
            Q  P+T
Sbjct: 290 -QVEPTT 295

>pdb|2ZZT|A Chain A, Crystal Structure Of The Cytosolic Domain Of The Cation Diffusion Facilitator Family Protein Length = 107

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 9  HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
          HR+R RR G+  +++  I VD   SV  AH +   +R +  K   ++ +V IH++P
Sbjct: 29 HRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTIHVEP 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
2zzt_A	107	Putative uncharacterized protein; cation diffusion	2e-18
3byp_A	94	CZRB protein; membrane protein, zinc transporter,	2e-16
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	7e-15

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Length = 107

 Score = 75.5 bits (186), Expect = 2e-18
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 6  QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
             HR+R RR G+  ++++ I VD   SV  AH +   +R ++ K   ++ +V IH++P 
Sbjct: 26 HNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPL 85

Query: 66 Y 66
           
Sbjct: 86 G 86

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Length = 94

 Score = 69.7 bits (171), Expect = 2e-16
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 7  GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
            H L+ RRAG   +L+ H+VV   + V  AH + + +   + ++ P + +  IH++P 
Sbjct: 29 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 86

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283

 Score = 69.5 bits (171), Expect = 7e-15
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           G H LR R++G + ++ +H+ ++    +  AH V + V   I +  P   +V IH DP 
Sbjct: 223 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGS-DVIIHQDPC 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
2zzt_A	107	Putative uncharacterized protein; cation diffusion	99.63
3byp_A	94	CZRB protein; membrane protein, zinc transporter,	99.6
3j1z_P	306	YIIP, cation efflux family protein; zinc transport	99.44
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	99.4
3byp_A	94	CZRB protein; membrane protein, zinc transporter,	98.99
2zzt_A	107	Putative uncharacterized protein; cation diffusion	98.97
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	98.56
3j1z_P	306	YIIP, cation efflux family protein; zinc transport	98.56
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	90.27
4dx5_A	1057	Acriflavine resistance protein B; multidrug efflux	85.44
2v50_A	1052	Multidrug resistance protein MEXB; DDM, RND, membr	81.79

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}

Probab=99.63  E-value=2e-15  Score=108.84  Aligned_cols=66  Identities=29%  Similarity=0.477  Sum_probs=62.4

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~   67 (180)
                      +|||.+||+||+|++|+.+++++||.|+++||+.++|+|+++++++|+++||.+.+++||++|...
T Consensus        22 ~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~   87 (107)
T 2zzt_A           22 FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN   87 (107)
T ss_dssp             CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred             CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence            699999999999999999999999999999999999999999999999999987899999999765

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A

Probab=99.60  E-value=6.2e-15  Score=103.30  Aligned_cols=62  Identities=27%  Similarity=0.494  Sum_probs=59.9

Q ss_pred             CCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 030287            3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA   65 (180)
Q Consensus         3 ~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~   65 (180)
                      |||.+||+||+|++|+.+++++||.|++++|+.++|++++++++.|+++||. .+++||+||.
T Consensus        25 ~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~-~~vtIh~ep~   86 (94)
T 3byp_A           25 GRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG-LQATIHVEPE   86 (94)
T ss_dssp             TTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT-EEEEEEEEEC
T ss_pred             CCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC-CEEEEEeCCC
Confidence            8999999999999999999999999999999999999999999999999997 4999999994

>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}

Probab=99.44  E-value=1.3e-13  Score=115.86  Aligned_cols=66  Identities=27%  Similarity=0.528  Sum_probs=62.8

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCC
Q 030287            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQ   68 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~   68 (180)
                      .|||.++|++|+|++|+++++++|++||+++|+.|+|+|++++|++|++++|. .+++||+||+..+
T Consensus       227 ~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~-~~v~IhveP~~~e  292 (306)
T 3j1z_P          227 DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED-AEVIIHQDPVQVE  292 (306)
T ss_dssp             STTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT-CEEEECCEETTSC
T ss_pred             CCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CeEEEEeCCCCCC
Confidence            58999999999999999999999999999999999999999999999999985 8999999998754

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A

Probab=99.40  E-value=1.2e-12  Score=108.55  Aligned_cols=65  Identities=29%  Similarity=0.544  Sum_probs=62.2

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~   67 (180)
                      .|||.++|++|+|++|+..++++|+++|+++|+.++|++++++|++|++++|. .+++||+||+..
T Consensus       218 ~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~  282 (283)
T 3h90_A          218 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV  282 (283)
T ss_dssp             SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCC
T ss_pred             CCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCC
Confidence            58999999999999999999999999999999999999999999999999997 899999999864

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A

Probab=98.99  E-value=6.7e-09  Score=72.20  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=65.0

Q ss_pred             HHHHHHHhhhccC--CCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCC
Q 030287           96 IDAVVYNTLSTKF--PEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRP  173 (180)
Q Consensus        96 i~~~l~~~~~~~~--~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~  173 (180)
                      ..+.++..+.+ +  +.+.++|++++..++....+++++.+++++++.++|+++.++++.+++++|.. .|.||+|+...
T Consensus        11 ~~~~I~~~l~~-~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~vtIh~ep~~~   88 (94)
T 3byp_A           11 EVERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPEGE   88 (94)
T ss_dssp             HHHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEECC-
T ss_pred             HHHHHHHHHHh-cCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-EEEEEeCCCCc
Confidence            34444555556 6  78899999999999888999999999999999999999999999999999976 99999998543

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}

Probab=98.97  E-value=7.4e-09  Score=74.18  Aligned_cols=77  Identities=17%  Similarity=0.331  Sum_probs=67.5

Q ss_pred             HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCC
Q 030287           96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRP  173 (180)
Q Consensus        96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~  173 (180)
                      ..+.++..+.+ +|.+.+++++.+...++...+++++.+++++++.++|+++.++++.|++.+|.+..|.||+||...
T Consensus        11 ~~~~I~~~l~~-~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~   87 (107)
T 2zzt_A           11 MYDDIFAVLER-FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN   87 (107)
T ss_dssp             HHHHHHHHHTT-CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred             HHHHHHHHHHc-CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence            44555666666 888999999999998888999999999999999999999999999999999999999999998754

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A

Probab=98.56  E-value=7.2e-07  Score=73.61  Aligned_cols=75  Identities=13%  Similarity=0.248  Sum_probs=65.7

Q ss_pred             HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287           96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR  172 (180)
Q Consensus        96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~  172 (180)
                      ..+.+++.+.+ .|...++|++++...+....+++|+.+|++++++++|++++++++.+++++|. ..|.||+||-+
T Consensus       207 ~~~~i~~~i~~-~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~  281 (283)
T 3h90_A          207 ERQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCS  281 (283)
T ss_dssp             HHHHHHHHHHH-SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSC
T ss_pred             HHHHHHHHHhc-CCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCC
Confidence            44455555566 78889999999999988899999999999999999999999999999999997 78999999864

>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}

Probab=98.56  E-value=1.7e-07  Score=78.56  Aligned_cols=81  Identities=10%  Similarity=0.137  Sum_probs=70.9

Q ss_pred             HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCC
Q 030287           96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP  175 (180)
Q Consensus        96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~  175 (180)
                      ..+.++..+.+ .|.+.++|++++..++.+..+++++.+|+++++.++|++++++|+++++.+| ..+|.||+||-+.=|
T Consensus       216 ~~~~I~~~i~~-~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~-~~~v~IhveP~~~eP  293 (306)
T 3j1z_P          216 TRQRIKLIAKE-DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFE-DAEVIIHQDPVQVEP  293 (306)
T ss_dssp             HHHHHHHHHHH-STTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHST-TCEEEECCEETTSCC
T ss_pred             HHHHHHHHHhc-CCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC-CCeEEEEeCCCCCCC
Confidence            34445556666 8888999999999999999999999999999999999999999999999887 568999999988888


Q ss_pred             CCc
Q 030287          176 EYQ  178 (180)
Q Consensus       176 ~~~  178 (180)
                      --|
T Consensus       294 t~~  296 (306)
T 3j1z_P          294 TTQ  296 (306)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            766

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=90.27  E-value=3.1  Score=31.12  Aligned_cols=100  Identities=12%  Similarity=0.158  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHHH---HhhhccCCCC
Q 030287           35 SAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVY---NTLSTKFPEK  111 (180)
Q Consensus        35 ~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~  111 (180)
                      +-.-.+...||+.|++.+|++..|.-    ..+....                 .....+.+++.|.   ..+++.  .+
T Consensus        50 ss~~Tlk~~Ie~~L~~~vpev~~V~~----v~~~~e~-----------------l~L~~~~v~~~L~~iRP~L~~~--dG  106 (154)
T 2z51_A           50 SSTMTMKMGIERRLMEKIPEIVAVEA----LPDEETG-----------------LELNEENIEKVLEEIRPYLIGT--AD  106 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCEEEE----CCSSCCS-----------------CCSSHHHHHHHHHHHGGGCCGG--GC
T ss_pred             ccHhHHHHHHHHHHHHhCCCceEEEE----ccCchhh-----------------hHHHHHHHHHHHHHHHHHhhhc--CC
Confidence            34456667999999999998766532    2211111                 1112344555444   333320  12


Q ss_pred             CceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEE
Q 030287          112 MGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVS  165 (180)
Q Consensus       112 ~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~  165 (180)
                      .   ++.+-.++++. +  .+.+.+.++-  ...+...+|+.+++.+|++.+|.
T Consensus       107 G---dvelv~v~~~~-v--~v~l~Gac~~--~~Tlk~~Ie~~l~e~vP~i~~V~  152 (154)
T 2z51_A          107 G---SLDLVEIEDPI-V--KIRITGPAAG--VMTVRVAVTQKLREKIPSIAAVQ  152 (154)
T ss_dssp             C---EEEEEEEETTE-E--EEEEESGGGG--CHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             C---CeEEEEEECCE-E--EEEEecCCcc--cHhHHHHHHHHHHHHCCCccEEE
Confidence            3   45554444442 2  3455566652  45677789999999999999985

>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...

Probab=85.44  E-value=18  Score=34.33  Aligned_cols=147  Identities=10%  Similarity=0.037  Sum_probs=80.7

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHh-hCCCeeEEEEEEeeCCCC-CCCCccccc--ccccccCCCCCCCccHHHH
Q 030287           21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHK-SHPEVSEVFIHIDPAYFQ-FSPSTMDQL--GLEGCKAHSSNICVDDLDI   96 (180)
Q Consensus        21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~-~~~~v~~v~IHidP~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~i   96 (180)
                      .+.+.+..|+..|+++..++.+.+|+.+++ +.|++..+...+--.... ...  ...+  .+....... .......++
T Consensus       571 ~i~v~v~~p~gtsle~t~~~~~~ie~~l~~~~~p~V~~v~s~~G~~~~~~~~n--~~~i~V~L~~~~~r~-~~~~s~~~i  647 (1057)
T 4dx5_A          571 VFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQN--TGIAFVSLKDWADRP-GEENKVEAI  647 (1057)
T ss_dssp             EEEEEEECCTTCCHHHHHHHHHHHHHHHHHHSTTTEEEEEEEESCSTTCCCTT--EEEEEEEECCGGGSC-SGGGSHHHH
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecccCCCCCCc--eEEEEEEEecHHHcC-CcCCCHHHH
Confidence            467888999999999999999999999981 467777665443211000 000  0000  000000000 000134577


Q ss_pred             HHHHHHhhhccCCCCCceeeEEEEEe------CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCcc-EEEEEEe
Q 030287           97 DAVVYNTLSTKFPEKMGVERITHHLL------HGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVF-QVSVKLR  169 (180)
Q Consensus        97 ~~~l~~~~~~~~~~~~~v~~v~~h~~------~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~-~V~ih~e  169 (180)
                      .+.++..+.. +|..    .+.....      +..-.+.+.+....+.+..+..+++.++++.+ ++.|++. .|..-  
T Consensus       648 ~~~lr~~l~~-~p~~----~~~~~~~~~~~~~g~~~~~~i~l~~~~g~d~~~L~~~a~~l~~~l-~~~~gv~~~v~~~--  719 (1057)
T 4dx5_A          648 TMRATRAFSQ-IKDA----MVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEA-AKHPDMLTSVRPN--  719 (1057)
T ss_dssp             HHHHHHHHTT-STTC----EEEEECCCSCGGGCCSSEEEEEEEECSSCCHHHHHHHHHHHHHHH-TTCTTTEEEEEES--
T ss_pred             HHHHHHHHhc-CCCe----EEEEecCCcccCCCCCCCeeEEEEeCCCCCHHHHHHHHHHHHHHH-HcCCCceeccccc--
Confidence            7788877765 7652    1111111      11112333444434556677888999997665 5589888 65544  


Q ss_pred             cCCCCCCCc
Q 030287          170 LGRPIPEYQ  178 (180)
Q Consensus       170 ~~~~~~~~~  178 (180)
                      ...+-|+++
T Consensus       720 ~~~~~~~l~  728 (1057)
T 4dx5_A          720 GLEDTPQFK  728 (1057)
T ss_dssp             SCCCEEEEE
T ss_pred             ccCCCceEE
Confidence            555556554

>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}

Probab=81.79  E-value=29  Score=33.03  Aligned_cols=147  Identities=12%  Similarity=0.067  Sum_probs=77.9

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC--eeEEEEEEeeCCC-CCCCCccccc--ccccccCCCCCCCccHHH
Q 030287           21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPE--VSEVFIHIDPAYF-QFSPSTMDQL--GLEGCKAHSSNICVDDLD   95 (180)
Q Consensus        21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~--v~~v~IHidP~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   95 (180)
                      .+.+.+..|+..|+++..+..+++|+.+++ .|+  +..+...+-.... ....  ...+  .+..... .........+
T Consensus       571 ~~~v~~~~p~g~s~~~t~~~~~~ie~~l~~-~p~~~V~~v~s~~G~~~~~~~~~--~~~i~v~l~~~~~-r~~~~~~~~~  646 (1052)
T 2v50_A          571 VLFAQVQTPPGSSAERTQVVVDSMREYLLE-KESSSVSSVFTVTGFNFAGRGQS--SGMAFIMLKPWEE-RPGGENSVFE  646 (1052)
T ss_dssp             EEEEEEECSTTCCHHHHHHHHHHHHHHHHH-HTTTTEEEEEEEESCCSSCCSTT--EEEEEEEECCTTS-CCSSTTSHHH
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHHHHHHHHh-CCCceEEEEEEEecCCCCCCCCc--eEEEEEEEccHHh-cccccCCHHH
Confidence            357788899999999999999999999986 588  7776654421000 0000  0000  0000000 0000002346


Q ss_pred             HHHHHHHhhhccCCCCCceeeEEEEE------eCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287           96 IDAVVYNTLSTKFPEKMGVERITHHL------LHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR  169 (180)
Q Consensus        96 i~~~l~~~~~~~~~~~~~v~~v~~h~------~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e  169 (180)
                      +.+.++..+.. +|..    ....-.      .+....+.+.+.+..+....+..++++++++.+ ++.|++..|..-  
T Consensus       647 i~~~l~~~l~~-~p~~----~~~~~~~~~~~~~g~~~~~~i~i~~~~g~d~~~L~~~a~~l~~~l-~~~~gv~~v~~~--  718 (1052)
T 2v50_A          647 LAKRAQMHFFS-FKDA----MVFAFAPPSVLELGNATGFDLFLQDQAGVGHEVLLQARNKFLMLA-AQNPALQRVRPN--  718 (1052)
T ss_dssp             HHHHHHHHSSS-CSSS----EEEEECCCSCC-----CCCCEEEEECSSSCHHHHHHHHHHHHHHT-TSCTTEEEEEES--
T ss_pred             HHHHHHHHhhc-CCCc----EEEEecCccccCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHH-hcCCCeEecccc--
Confidence            77777766655 5542    111110      011111223344444445566778888887554 458888777665  


Q ss_pred             cCCCCCCCcc
Q 030287          170 LGRPIPEYQL  179 (180)
Q Consensus       170 ~~~~~~~~~~  179 (180)
                      .+.+-|++++
T Consensus       719 ~~~~~p~~~i  728 (1052)
T 2v50_A          719 GMSDEPQYKL  728 (1052)
T ss_dssp             SCCCEECCBC
T ss_pred             ccCCCeeEEE
Confidence            5555666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d3bypa1	82	d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {	9e-16
d2qfia1	82	d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF	3e-14

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Putative Zinc transporter CzrB
species: Thermus thermophilus [TaxId: 274]

 Score = 66.7 bits (163), Expect = 9e-16
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 7  GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
            H L+ RRAG   +L+ H+VV   + V  AH + + +   + ++ P + +  IH++P 
Sbjct: 24 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 81

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Ferrous-iron efflux pump FieF (YiiP)
species: Escherichia coli [TaxId: 562]

 Score = 62.4 bits (152), Expect = 3e-14
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 6  QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           G H LR R++G + ++ +H+ ++    +  AH V + V   I +  P  S+V IH DP 
Sbjct: 21 SGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP-GSDVIIHQDPC 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d3bypa1	82	Putative Zinc transporter CzrB {Thermus thermophil	99.78
d2qfia1	82	Ferrous-iron efflux pump FieF (YiiP) {Escherichia	99.67
d3bypa1	82	Putative Zinc transporter CzrB {Thermus thermophil	99.23
d2qfia1	82	Ferrous-iron efflux pump FieF (YiiP) {Escherichia	98.88
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	86.75

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Putative Zinc transporter CzrB
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=8.7e-19  Score=119.46  Aligned_cols=62  Identities=27%  Similarity=0.497  Sum_probs=59.3

Q ss_pred             CceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 030287            4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (180)
Q Consensus         4 gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~   66 (180)
                      +++++|+||+|++|+++|+|+||+||++||+.+||+|++.+|++|+++||. .+++||+||+.
T Consensus        21 ~vv~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~-~~v~vHveP~g   82 (82)
T d3bypa1          21 RALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG-LQATIHVEPEG   82 (82)
T ss_dssp             TCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT-EEEEEEEEECC
T ss_pred             CceeeeEEEeeEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CEEEEEeCCCC
Confidence            577999999999999999999999999999999999999999999999997 59999999974

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Ferrous-iron efflux pump FieF (YiiP)
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.2e-19  Score=122.29  Aligned_cols=64  Identities=30%  Similarity=0.552  Sum_probs=61.8

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 030287            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (180)
Q Consensus         2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~   66 (180)
                      +|||.++|+||+|++|+.+|+|+||+||++||+.+||+|++++|++|+++||. .+++||+||+.
T Consensus        17 ~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~~~~-~~v~iHveP~~   80 (82)
T d2qfia1          17 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCS   80 (82)
T ss_dssp             SSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSSSCC-SSCBCCCCCSC
T ss_pred             CCCceeeeEEEEEEeCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCcc
Confidence            69999999999999999999999999999999999999999999999999996 69999999986

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Putative Zinc transporter CzrB
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=4.2e-11  Score=80.62  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=62.5

Q ss_pred             HHHHHHhhhccCC--CCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287           97 DAVVYNTLSTKFP--EKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG  171 (180)
Q Consensus        97 ~~~l~~~~~~~~~--~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~  171 (180)
                      .+.++.++.+ .+  .+.++|+++.++.+..+.+++++.||+++|+.+||++++++|+.+++.+|.. .|.||+||-
T Consensus         7 ~~~I~~~i~~-~~~~~vv~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~~-~v~vHveP~   81 (82)
T d3bypa1           7 VERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE   81 (82)
T ss_dssp             HHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEEC
T ss_pred             HHHHHHHHHh-CCCCCceeeeEEEeeEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCC-EEEEEeCCC
Confidence            3344444444 44  3568999999999999999999999999999999999999999999999986 899999983

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Cation efflux protein cytoplasmic domain-like
family: Cation efflux protein cytoplasmic domain-like
domain: Ferrous-iron efflux pump FieF (YiiP)
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=2.3e-11  Score=81.80  Aligned_cols=74  Identities=14%  Similarity=0.264  Sum_probs=65.1

Q ss_pred             HHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287           97 DAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR  172 (180)
Q Consensus        97 ~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~  172 (180)
                      .+.++..+.+ +|...++|+++.++.++.+.+++++.+|+++|+.+||++++++|+.+++.+|. ..|.||+||-+
T Consensus         7 ~~~I~~~i~~-~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~~~~-~~v~iHveP~~   80 (82)
T d2qfia1           7 RQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCS   80 (82)
T ss_dssp             HHHHHHHHTT-SSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSSSCC-SSCBCCCCCSC
T ss_pred             HHHHHHHHHc-CCCceeeeEEEEEEeCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCcc
Confidence            3444555566 88889999999999999999999999999999999999999999999999986 48999999854

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=86.75  E-value=1.3  Score=28.28  Aligned_cols=72  Identities=11%  Similarity=0.191  Sum_probs=42.9

Q ss_pred             cHHHHHHHHHHhhhcc----CCCCCceeeEEEEEeCCeEEEEEEEEeC-CCCChhHHHHHHHHHHHHHHHHCCCccEEEE
Q 030287           92 DDLDIDAVVYNTLSTK----FPEKMGVERITHHLLHGKILLEVEVSMS-PDTSIRDAMKVAEEAEKEIMKAAPNVFQVSV  166 (180)
Q Consensus        92 ~~~~i~~~l~~~~~~~----~~~~~~v~~v~~h~~~~~~~v~~d~~v~-~~~~i~~ah~ia~~le~~i~~~~p~~~~V~i  166 (180)
                      +.+++.++|+.+..-.    +-...-|.++.+.  +|++.+  .+.++ ++++..+  .+..+++++++ ..+++..|.|
T Consensus         2 le~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~--~~~v~v--~l~lt~~~cp~~~--~i~~~i~~al~-~l~gv~~V~V   74 (91)
T d2cu6a1           2 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPRAYV--RMTLTTPGCPLHD--SLGEAVRQALS-RLPGVEEVEV   74 (91)
T ss_dssp             HHHHHHHHHTTCEETTTTEETTTTTCEEEEEEE--TTEEEE--EECCSSSSCCSSC--HHHHHHHHHHH-TSTTCCEEEE
T ss_pred             hHHHHHHHHhcCCCCCCCcChhhccceeEEEEe--ccccEE--EEEcCCCCCcHHH--HHHHHHHHHHH-cCCCCceEEE
Confidence            3455666665442111    1122335566553  465555  55554 4477554  89999987775 5999999988


Q ss_pred             EEec
Q 030287          167 KLRL  170 (180)
Q Consensus       167 h~e~  170 (180)
                      .+..
T Consensus        75 ~~~~   78 (91)
T d2cu6a1          75 EVTF   78 (91)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8743