Citrus Sinensis ID: 030290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MASASAETASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN
Secondary Structure (PSIPRED)
ccccccccccccHHHHHccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEccccEEEEEccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHccccHHcccccccccccccccccccHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEcccccEEEEEEcccHEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcc
Coil and Loop (DISEMBL)
masasaetasssseiataaasptterrgipaaqFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKeggealtadfevsegifsrariedtdSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN
Flexible Loop (DISEMBL)
masasaetasssseiataaasptterrgIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKeggealtadfevsEGIFsrariedtdSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN
Low Complexity Region (SEG)
MasasaetasssseiataaasptteRRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN
Disordered region (IsUnstruct)
******************************AAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC*
Disordered Region (DISOPRED)
********************************QFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMK************PDIEKCLDIVA*************ADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN
Disordered Region (DISEMBL)
*************************RRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN
Disordered Region (DISPRO)
****************************IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASASAETASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNxxxxxxxxxxxxxxxxxxxxxVTITQVVCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
P57741	195	Probable prefoldin subuni	yes	no	0.855	0.789	0.837	3e-71
P61759	196	Prefoldin subunit 3 OS=Mu	yes	no	0.938	0.862	0.423	1e-32
Q5RCG9	197	Prefoldin subunit 3 OS=Po	yes	no	0.938	0.857	0.415	3e-32
P61758	197	Prefoldin subunit 3 OS=Ho	yes	no	0.938	0.857	0.410	6e-32
Q2TBX2	197	Prefoldin subunit 3 OS=Bo	yes	no	0.938	0.857	0.421	1e-30
O18054	185	Probable prefoldin subuni	yes	no	0.838	0.816	0.364	1e-26
Q9VGP6	185	Probable prefoldin subuni	yes	no	0.816	0.794	0.390	7e-23
Q54LS2	195	Probable prefoldin subuni	yes	no	0.811	0.748	0.386	1e-22
Q10143	169	Probable prefoldin subuni	yes	no	0.8	0.852	0.388	9e-22
P48363	199	Prefoldin subunit 3 OS=Sa	yes	no	0.844	0.763	0.345	1e-20

>sp|P57741|PFD3_ARATH Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1

 Score =  267 bits (683), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/154 (83%), Positives = 144/154 (93%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAA+F++DV+T+LSQ  LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 14  TERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPD 73

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA 143
           IEKCL++VATL+AKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+EA
Sbjct: 74  IEKCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEA 133

Query: 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           + LL+ NLENAKASLEVL+ADLQFLRDQVT+TQV
Sbjct: 134 SALLKNNLENAKASLEVLVADLQFLRDQVTVTQV 167

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 1/170 (0%)

Query: 9   ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVE 67
           A     + TAA +      GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E
Sbjct: 4   AKDGCGLETAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFME 63

Query: 68  MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127
           + L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A +  TD VC
Sbjct: 64  LNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVC 123

Query: 128 LWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           LWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct: 124 LWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 173

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Mus musculus (taxid: 10090)

>sp|Q5RCG9|PFD3_PONAB Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1

 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 110/178 (61%), Gaps = 9/178 (5%)

Query: 4   ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
           A+ + +    E+AT        RR   GIP A FVEDV +F+ Q   +  ++ L  L E+
Sbjct: 2   AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56

Query: 60  LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
            Q+YK +E+ L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A 
Sbjct: 57  YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116

Query: 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           +  TD VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct: 117 VPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 174

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Pongo abelii (taxid: 9601)

>sp|P61758|PFD3_HUMAN Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3

 Score =  136 bits (343), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 9/178 (5%)

Query: 4   ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
           A+ + +    E+AT        RR   GIP A FVEDV +F+ Q   +  ++ L  L E+
Sbjct: 2   AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56

Query: 60  LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
            Q+YK +E+ L  ++R L+ +IP+I++ L+I+  +Q KKE   ++   F +++ ++ +A 
Sbjct: 57  YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116

Query: 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           +  TD +CLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct: 117 VPPTDKMCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 174

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Homo sapiens (taxid: 9606)

>sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 104/173 (60%), Gaps = 4/173 (2%)

Query: 9   ASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYK 64
           A+S         +    RR   GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK
Sbjct: 2   AASKDGCGVGEVAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYK 61

Query: 65  LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTD 124
            +E+ L  ++R L+ +IP+I++ L+I+   Q KKE   +L   F +++ ++ +A +  TD
Sbjct: 62  FMELNLAQKKRRLKGQIPEIKQTLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTD 121

Query: 125 SVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
            VCLWLGANVMLEY  DEA  LL+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct: 122 KVCLWLGANVMLEYDIDEAQALLEKNLLTATKNLDSLEEDLDFLRDQFTTTEV 174

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|O18054|PFD3_CAEEL Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3 PE=3 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 96/151 (63%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           RGIP ++ +EDV+++L++  L +  A   L+E+  +YK VE  +LAQ+  +  KIP+ E 
Sbjct: 11  RGIPKSELIEDVESWLTKEKLSIEEAEVVLREKYGKYKYVESSMLAQKVRMSEKIPEFEN 70

Query: 87  CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
            L I+ TL AK+   E+    F +S+ ++++A ++  + V +WLGANVM+EY  + A  L
Sbjct: 71  SLSIIDTLIAKRAADESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKL 130

Query: 147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           L KN  + +  ++ L  +L +++DQ+T T+V
Sbjct: 131 LDKNRGSVQKVVDELTNELSYIKDQITTTEV 161

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719 PE=3 SV=2

 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 4/151 (2%)

Query: 28  GIPAAQFVEDVQTFLSQL-DLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           GIP A F+E++ TF+SQ  + +    L  L E+  +Y+ +   L A++R L+++IPD+E+
Sbjct: 13  GIPEAVFLEEIDTFMSQPENENCEKVLQRLDEQHGKYRFMACNLEARRRKLKSQIPDLER 72

Query: 87  CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
            L++V  L+ + E  E     F +S+ +F +  +  T +V LWLGA+VMLEY  DEA  L
Sbjct: 73  SLEMVNVLRKEDEERET---QFLLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEAL 129

Query: 147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           L +N+ +A  +L+ +  D  FLRDQ+T T+V
Sbjct: 130 LNQNITSAVGNLKSVEHDQDFLRDQITTTEV 160

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q54LS2|PFD3_DICDI Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3 PE=3 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)

Query: 28  GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87
            IP   F+ +V+ F+   D DV +    LQE  Q+YK  E KL      L  +   +++ 
Sbjct: 23  NIPMVTFISNVEEFVK--DKDVENVFKQLQEAYQKYKFFESKLSNNISMLTQRSKQLQES 80

Query: 88  LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLL 147
           LDIV  ++ K    E+ +  +E+SEG++S A++ +  S+ LWLGANVMLEYS +EA  +L
Sbjct: 81  LDIVDHVENK--SNESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVL 138

Query: 148 QKNLENAKASLEVLIADLQFLRDQVTITQV 177
           +KN +     L   I DL F++DQ+T T V
Sbjct: 139 RKNKDTVDRQLSESIQDLGFVKDQITTTDV 168

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q10143|PFD3_SCHPO Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.07c PE=3 SV=1

 Score =  103 bits (256), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 8/152 (5%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLD-VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
           RGIP AQF E       +L ++     L   QE + +YK +E  ++ +   L  KIPDI 
Sbjct: 7   RGIPPAQFFE-----FKELSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLDDKIPDIR 61

Query: 86  KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATV 145
           K L  V  L+ ++  G++ T  +E+++ + ++A +E  D+V LWLGANVMLEY+ +EA  
Sbjct: 62  KTLQSVQFLKERQ--GDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEEAEA 119

Query: 146 LLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           LL + L +A+ +L+    DL+FLR QVT  +V
Sbjct: 120 LLTQKLNSAEETLKACKEDLEFLRAQVTTMEV 151

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P48363|PFD3_YEAST Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAC10 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 10/162 (6%)

Query: 27  RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
           RGIP A F+E+V   +     D        QERL +YK ++   LA  + L+ +IPD+E 
Sbjct: 13  RGIPQAPFIENVNEIIKDPS-DFELCFNKFQERLSKYKFMQESKLATIKQLKTRIPDLEN 71

Query: 87  CLDIVATLQAKKEGG----EALTADFEVSEGIFSRARIEDTD-----SVCLWLGANVMLE 137
            L I  +L+   + G    E +   +++++ ++++A+++  +      V LWLGA+VMLE
Sbjct: 72  TLKICQSLRNHSDEGDESDEPILLHYQLNDTLYTKAQVDIPEDRADLKVGLWLGADVMLE 131

Query: 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC 179
           Y  DEA  LL+K L +++ SL V   D++FLR+ +T  +V C
Sbjct: 132 YPIDEAIELLKKKLADSEQSLTVSTEDVEFLRENITTMEVNC 173

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
255556430	185	prefoldin subunit, putative [Ricinus com	0.883	0.859	0.867	8e-74
225432002	188	PREDICTED: probable prefoldin subunit 3	0.905	0.867	0.835	8e-74
115489090	196	Os12g0562900 [Oryza sativa Japonica Grou	0.855	0.785	0.883	7e-73
414878111	188	TPA: prefoldin subunit 3 [Zea mays]	0.9	0.861	0.829	2e-72
195635051	188	prefoldin subunit 3 [Zea mays]	0.888	0.851	0.836	3e-72
226504476	188	LOC100282989 [Zea mays] gi|195626666|gb|	0.888	0.851	0.836	3e-72
242083808	191	hypothetical protein SORBIDRAFT_08g01827	0.85	0.801	0.875	1e-71
224108764	192	predicted protein [Populus trichocarpa]	0.916	0.859	0.810	2e-71
449432928	194	PREDICTED: probable prefoldin subunit 3-	0.861	0.798	0.859	2e-71
388508614	192	unknown [Lotus japonicus]	0.855	0.802	0.857	5e-71

>gi|255556430|ref|XP_002519249.1| prefoldin subunit, putative [Ricinus communis] gi|223541564|gb|EEF43113.1| prefoldin subunit, putative [Ricinus communis]

 Score =  281 bits (719), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 138/159 (86%), Positives = 147/159 (92%)

Query: 19  AASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQ 78
           A+   TERRGIP AQFVEDV+T+LSQ  LDVNS L+FLQERLQQYKLVEMKLLAQQRDLQ
Sbjct: 2   ASVSATERRGIPGAQFVEDVETYLSQSGLDVNSGLSFLQERLQQYKLVEMKLLAQQRDLQ 61

Query: 79  AKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY 138
           AKIPDIEKCLD+VATLQAKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEY
Sbjct: 62  AKIPDIEKCLDVVATLQAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEY 121

Query: 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           SC+EAT LLQKNL+NAKASLEVL+ADLQFLRDQVTITQV
Sbjct: 122 SCEEATALLQKNLDNAKASLEVLVADLQFLRDQVTITQV 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432002|ref|XP_002279358.1| PREDICTED: probable prefoldin subunit 3 [Vitis vinifera]

 Score =  281 bits (719), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 137/164 (83%), Positives = 150/164 (91%), Gaps = 1/164 (0%)

Query: 15  IATAAASP-TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQ 73
           +A++++SP  TERRGIP A FV DVQT+L++  LD NSALAFLQERLQQYKLVEMKLLAQ
Sbjct: 1   MASSSSSPAVTERRGIPGASFVHDVQTYLTESGLDCNSALAFLQERLQQYKLVEMKLLAQ 60

Query: 74  QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           QRDLQAKIPDIEKCLD+VATL+AKK  GE L ADFEVSEGI+SRARIEDTDSVCLWLGAN
Sbjct: 61  QRDLQAKIPDIEKCLDVVATLEAKKGTGEPLIADFEVSEGIYSRARIEDTDSVCLWLGAN 120

Query: 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           VMLEYSC+EAT LLQKNLENAKASLEVL+ DLQFLRDQVTITQV
Sbjct: 121 VMLEYSCEEATALLQKNLENAKASLEVLVTDLQFLRDQVTITQV 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489090|ref|NP_001067032.1| Os12g0562900 [Oryza sativa Japonica Group] gi|77556159|gb|ABA98955.1| prefoldin subunit 3, putative, expressed [Oryza sativa Japonica Group] gi|113649539|dbj|BAF30051.1| Os12g0562900 [Oryza sativa Japonica Group] gi|215701045|dbj|BAG92469.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765550|dbj|BAG87247.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617303|gb|EEE53435.1| hypothetical protein OsJ_36518 [Oryza sativa Japonica Group]

 Score =  278 bits (711), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 136/154 (88%), Positives = 144/154 (93%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAA FVEDV+T+L Q  LDVNS LAFLQERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 21  TERRGIPAASFVEDVETYLRQAGLDVNSGLAFLQERLQQYKIVEMKLLAQQRDLQAKIPD 80

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA 143
           IEKCLDIVATLQAKK  GEALTADFE+SEGI+SRA+IEDTDSVCLWLGANVMLEYSCDEA
Sbjct: 81  IEKCLDIVATLQAKKALGEALTADFELSEGIYSRAKIEDTDSVCLWLGANVMLEYSCDEA 140

Query: 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
             LL+KNLENAKASLEVL+ADLQFLRDQ TITQV
Sbjct: 141 NALLKKNLENAKASLEVLVADLQFLRDQQTITQV 174

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414878111|tpg|DAA55242.1| TPA: prefoldin subunit 3 [Zea mays]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/164 (82%), Positives = 148/164 (90%), Gaps = 2/164 (1%)

Query: 16  ATAAASP--TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQ 73
           A AA++P    ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLAQ
Sbjct: 3   AAAASTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLAQ 62

Query: 74  QRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
           QRDLQAKIPDIEKCLDIV TLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGAN
Sbjct: 63  QRDLQAKIPDIEKCLDIVTTLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGAN 122

Query: 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           VMLEYSCDEA  LL+KNLENAKASLEVL+ADL FLRDQ TITQV
Sbjct: 123 VMLEYSCDEANALLKKNLENAKASLEVLVADLHFLRDQQTITQV 166

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195635051|gb|ACG36994.1| prefoldin subunit 3 [Zea mays]

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 138/165 (83%), Positives = 149/165 (90%), Gaps = 5/165 (3%)

Query: 18  AAASPTT-----ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLA 72
           AAAS +T     ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLA
Sbjct: 2   AAASVSTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLA 61

Query: 73  QQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132
           QQRDLQAKIPDIEKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGA
Sbjct: 62  QQRDLQAKIPDIEKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGA 121

Query: 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           NVMLEYSCDEA  LL+KNLENAKASLEVL+ADL FLRDQ TITQV
Sbjct: 122 NVMLEYSCDEANALLKKNLENAKASLEVLVADLHFLRDQQTITQV 166

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504476|ref|NP_001149365.1| LOC100282989 [Zea mays] gi|195626666|gb|ACG35163.1| prefoldin subunit 3 [Zea mays]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 138/165 (83%), Positives = 149/165 (90%), Gaps = 5/165 (3%)

Query: 18  AAASPTT-----ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLA 72
           AAAS +T     ERRGIPAA FVEDV+ +L Q+ LDVNSALAFLQERLQQYK+VEMKLLA
Sbjct: 2   AAASVSTPQGVAERRGIPAAAFVEDVEAYLRQVGLDVNSALAFLQERLQQYKIVEMKLLA 61

Query: 73  QQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132
           QQRDLQAKIPDIEKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGA
Sbjct: 62  QQRDLQAKIPDIEKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGA 121

Query: 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           NVMLEYSCDEA  LL+KNLENAKASLEVL+ADL FLRDQ TITQV
Sbjct: 122 NVMLEYSCDEANALLKKNLENAKASLEVLVADLHFLRDQQTITQV 166

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242083808|ref|XP_002442329.1| hypothetical protein SORBIDRAFT_08g018270 [Sorghum bicolor] gi|241943022|gb|EES16167.1| hypothetical protein SORBIDRAFT_08g018270 [Sorghum bicolor]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/153 (87%), Positives = 143/153 (93%)

Query: 25  ERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDI 84
           ERRGIPAA FVEDV+ +L Q  LDVNSALAFLQERLQQYK+VEMKLLAQQRDLQAKIPDI
Sbjct: 17  ERRGIPAAAFVEDVEAYLRQAGLDVNSALAFLQERLQQYKIVEMKLLAQQRDLQAKIPDI 76

Query: 85  EKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEAT 144
           EKCLDIVATLQAKK+ GEAL ADFE+SEGI+SRA+IEDTDSVCLWLGANVMLEYSCDEA 
Sbjct: 77  EKCLDIVATLQAKKDLGEALIADFELSEGIYSRAKIEDTDSVCLWLGANVMLEYSCDEAN 136

Query: 145 VLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
            LL+KNLENAKASLEVL+ADLQFLRDQ TITQV
Sbjct: 137 ALLKKNLENAKASLEVLVADLQFLRDQQTITQV 169

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108764|ref|XP_002314961.1| predicted protein [Populus trichocarpa] gi|222864001|gb|EEF01132.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 148/169 (87%), Gaps = 4/169 (2%)

Query: 9   ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEM 68
           ASSSS      A  TTERRGIP AQFVEDV+T+L+Q  LDVNS+L+FLQERLQQYKLVEM
Sbjct: 2   ASSSS----TEAETTTERRGIPGAQFVEDVETYLTQSGLDVNSSLSFLQERLQQYKLVEM 57

Query: 69  KLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128
           KLLAQ RDLQAKIPDIEKCLD+VA L AKK  GE L ADFEVSEGI+S+ARIED  SVCL
Sbjct: 58  KLLAQHRDLQAKIPDIEKCLDVVAILLAKKGTGEPLIADFEVSEGIYSQARIEDAGSVCL 117

Query: 129 WLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           WLGANVMLEYSC+EAT LLQKNL+NAKASLEVL+ADLQFLRDQVTITQV
Sbjct: 118 WLGANVMLEYSCEEATALLQKNLDNAKASLEVLVADLQFLRDQVTITQV 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432928|ref|XP_004134250.1| PREDICTED: probable prefoldin subunit 3-like [Cucumis sativus]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/157 (85%), Positives = 146/157 (92%), Gaps = 2/157 (1%)

Query: 23  TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 82
            T+RRGIPAAQFVEDV+T+LSQL LDV SALAFLQERLQQYKLVEMKLLAQQRDLQAKIP
Sbjct: 13  VTDRRGIPAAQFVEDVRTYLSQLQLDVQSALAFLQERLQQYKLVEMKLLAQQRDLQAKIP 72

Query: 83  DIEKCLDIVATLQAKKEG--GEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC 140
           DI+KCLDIVATLQAKKE   GE L ADFE+SEGI+SRARIE+TDSVCLWLGANVML+YS 
Sbjct: 73  DIKKCLDIVATLQAKKEAATGEPLVADFEISEGIYSRARIEETDSVCLWLGANVMLDYSY 132

Query: 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           +EA  LLQKNL+NAKASLEVL+ADLQFLRDQVTITQV
Sbjct: 133 EEAITLLQKNLDNAKASLEVLVADLQFLRDQVTITQV 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508614|gb|AFK42373.1| unknown [Lotus japonicus]

 Score =  271 bits (694), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 132/154 (85%), Positives = 142/154 (92%)

Query: 24  TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
           TERRGIPAAQFVEDVQT+L+QL LDVNS LAFLQERLQQY+LVEMKLLAQQRDLQAKIPD
Sbjct: 14  TERRGIPAAQFVEDVQTYLTQLGLDVNSTLAFLQERLQQYRLVEMKLLAQQRDLQAKIPD 73

Query: 84  IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA 143
           IEKCLD+V TLQAKK  GE L  DFEVSEGI+SRARI++TDSVCLWLGANVMLEYS +EA
Sbjct: 74  IEKCLDVVGTLQAKKGTGEELITDFEVSEGIYSRARIDETDSVCLWLGANVMLEYSLEEA 133

Query: 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
           T LL KNL+NAKASLEVL+ADL FLRDQVTITQV
Sbjct: 134 TSLLHKNLDNAKASLEVLVADLLFLRDQVTITQV 167

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
TAIR|locus:2157819	195	PFD3 "prefoldin 3" [Arabidopsi	0.844	0.779	0.835	8.8e-63
UNIPROTKB|K7GNY9	197	VBP1 "Uncharacterized protein"	0.833	0.761	0.456	1.8e-30
UNIPROTKB|F6XQ49	197	VBP1 "Uncharacterized protein"	0.833	0.761	0.456	3e-30
MGI|MGI:1333804	196	Vbp1 "von Hippel-Lindau bindin	0.833	0.765	0.450	3e-30
UNIPROTKB|F1RZQ7	197	VBP1 "Uncharacterized protein"	0.827	0.756	0.453	4.9e-30
UNIPROTKB|P61758	197	VBP1 "Prefoldin subunit 3" [Ho	0.833	0.761	0.443	6.2e-30
UNIPROTKB|G5E5K1	197	VBP1 "Prefoldin subunit 3" [Bo	0.833	0.761	0.456	7.9e-30
UNIPROTKB|E1BXR1	200	VBP1 "Uncharacterized protein"	0.833	0.75	0.450	1e-29
UNIPROTKB|Q2TBX2	197	VBP1 "Prefoldin subunit 3" [Bo	0.833	0.761	0.456	2.1e-29
UNIPROTKB|E2R6K7	201	VBP1 "Uncharacterized protein"	0.838	0.751	0.444	3.4e-29

TAIR|locus:2157819 PFD3 "prefoldin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 127/152 (83%), Positives = 142/152 (93%)

Query:    26 RRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
             RRGIPAA+F++DV+T+LSQ  LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPDIE
Sbjct:    16 RRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPDIE 75

Query:    86 KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATV 145
             KCL++VATL+AKK  GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+EA+ 
Sbjct:    76 KCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEASA 135

Query:   146 LLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
             LL+ NLENAKASLEVL+ADLQFLRDQVT+TQV
Sbjct:   136 LLKNNLENAKASLEVLVADLQFLRDQVTVTQV 167

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0016272 "prefoldin complex" evidence=IEA;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|K7GNY9 VBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 69/151 (45%), Positives = 100/151 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
             L+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 174

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F6XQ49 VBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/151 (45%), Positives = 100/151 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTGSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
             L+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 174

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:1333804 Vbp1 "von Hippel-Lindau binding protein 1" [Mus musculus (taxid:10090)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 68/151 (45%), Positives = 100/151 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    23 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 82

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   ++   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    83 TLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 142

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
             L+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct:   143 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 173

GO:0005634 "nucleus" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|F1RZQ7 VBP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 68/150 (45%), Positives = 99/150 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQ 176
             L+KNL  A  +L+ L  DL FLRDQ T T+
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTE 173

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|P61758 VBP1 "Prefoldin subunit 3" [Homo sapiens (taxid:9606)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 67/151 (44%), Positives = 100/151 (66%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   ++   F +++ ++ +A +  TD +CLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKMCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
             L+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct:   144 LEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 174

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|G5E5K1 VBP1 "Prefoldin subunit 3" [Bos taurus (taxid:9913)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 69/151 (45%), Positives = 99/151 (65%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYMQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
             L+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct:   144 LEKNLLTATKNLDSLEEDLDFLRDQFTTTEV 174

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|E1BXR1 VBP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 68/151 (45%), Positives = 98/151 (64%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    27 GIPEAVFVEDVDSFMKQPGNETADVVLKKLDEQYQKYKFLELNLAQKKRRLKGQIPEIKQ 86

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+  +Q KKE    +   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    87 TLEILKHMQKKKESTNPMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 146

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
             L+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct:   147 LEKNLSTATRNLDSLEEDLDFLRDQFTTTEV 177

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

UNIPROTKB|Q2TBX2 VBP1 "Prefoldin subunit 3" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 69/151 (45%), Positives = 98/151 (64%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  +  L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
              L+I+   Q KKE   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  L
Sbjct:    84 TLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQAL 143

Query:   147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
             L+KNL  A  +L+ L  DL FLRDQ T T+V
Sbjct:   144 LEKNLLTATKNLDSLEEDLDFLRDQFTTTEV 174

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|E2R6K7 VBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 68/153 (44%), Positives = 100/153 (65%)

Query:    28 GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
             GIP A FVEDV +F+ Q   +  ++ L  L E+ Q+YK +E+ L  ++R L+ +IP+I++
Sbjct:    24 GIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFMELNLAQKKRRLKGQIPEIKQ 83

Query:    87 CLDIVATLQAKK-EGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATV 145
              L+I+  +Q KK E   +L   F +++ ++ +A +  TD VCLWLGANVMLEY  DEA  
Sbjct:    84 TLEILKYMQKKKKESTGSLETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQA 143

Query:   146 LLQKNLENAKASLEVLIADLQFLRDQVTITQVV 178
             LL+KNL  A  +L+ L  DL FLRDQ T T+ +
Sbjct:   144 LLEKNLSTATKNLDSLEEDLDFLRDQFTTTETI 176

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O18054	PFD3_CAEEL	No assigned EC number	0.3642	0.8388	0.8162	yes	no
P57741	PFD3_ARATH	No assigned EC number	0.8376	0.8555	0.7897	yes	no
P61758	PFD3_HUMAN	No assigned EC number	0.4101	0.9388	0.8578	yes	no
P61759	PFD3_MOUSE	No assigned EC number	0.4235	0.9388	0.8622	yes	no
Q2TBX2	PFD3_BOVIN	No assigned EC number	0.4219	0.9388	0.8578	yes	no
Q5RCG9	PFD3_PONAB	No assigned EC number	0.4157	0.9388	0.8578	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	180
pfam02996	120	pfam02996, Prefoldin, Prefoldin subunit	3e-24
cd00584	129	cd00584, Prefoldin_alpha, Prefoldin alpha subunit;	2e-17
cd00890	129	cd00890, Prefoldin, Prefoldin is a hexameric molec	2e-13
PRK03947	140	PRK03947, PRK03947, prefoldin subunit alpha; Revie	3e-06
COG1730	145	COG1730, GIM5, Predicted prefoldin, molecular chap	1e-05
TIGR00293	126	TIGR00293, TIGR00293, prefoldin, archaeal alpha su	3e-04

>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit

 Score = 91.2 bits (227), Expect = 3e-24
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%)

Query: 63  YKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIED 122
            K     L A+   L+  I ++EK L+ + TL+ + EG E L     +  G+F +  + D
Sbjct: 1   LKQEIESLQAELARLREAIEELEKTLETLKTLKKEDEGKEVL---VPLGAGLFVKGEVID 57

Query: 123 TDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN 180
           TD V + LGA   +E S +EA   L+K +E  +  LE L  +L+ L+DQ+T  +    
Sbjct: 58  TDKVLVDLGAGYYVEKSLEEAIEFLKKRIEELEKQLEKLEEELEKLKDQITTLEANLQ 115

This family comprises of several prefoldin subunits. The biogenesis of the cytoskeletal proteins actin and tubulin involves interaction of nascent chains of each of the two proteins with the oligomeric protein prefoldin (PFD) and their subsequent transfer to the cytosolic chaperonin CCT (chaperonin containing TCP-1). Electron microscopy shows that eukaryotic PFD, which has a similar structure to its archaeal counterpart, interacts with unfolded actin along the tips of its projecting arms. In its PFD-bound state, actin seems to acquire a conformation similar to that adopted when it is bound to CCT. Length = 120

>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 74.2 bits (183), Expect = 2e-17
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 53  LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSE 112
           L  L  +LQ  +    +L  +   L   I + E+  + + TL+   EG E L     +  
Sbjct: 1   LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETL---VPLGA 57

Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172
           G+F +A+++DTD V + LG    +E   +EA   L K +E     +E L  +L  L+DQ+
Sbjct: 58  GVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQI 117

Query: 173 T 173
            
Sbjct: 118 N 118

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 56  LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
           L  +LQQ +     L  Q + L+A++ + EK  + + TL+  +E  E L     +  G+F
Sbjct: 4   LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVP---LGAGLF 60

Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175
            +A ++D D V + LG  V +E S +EA   L+K LE  +  +E L   L+ L+DQ+T  
Sbjct: 61  VKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITEL 120

Query: 176 QV 177
           Q 
Sbjct: 121 QE 122

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 56  LQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGI 114
           L  +LQ  +  +++ L QQ + LQA I +++   + +  L++K EG E L     +  G 
Sbjct: 11  LAAQLQALQ-AQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETL---VPIGAGS 66

Query: 115 FSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172
           F +A+++D D V + LGA    E   DEA  +L K  E  + +LE L   LQ L  ++
Sbjct: 67  FVKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRI 124

Length = 140

>gnl|CDD|224644 COG1730, GIM5, Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 3/118 (2%)

Query: 56  LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
           L  +LQ  +     L AQ   L A I +++  ++ +  L+   EG E L     V  G+F
Sbjct: 11  LAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVL---VPVGAGLF 67

Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173
            +A+++D D V + +G+    E S DEA   L+K +E  + ++E L   L  L  ++ 
Sbjct: 68  VKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIE 125

Length = 145

>gnl|CDD|129394 TIGR00293, TIGR00293, prefoldin, archaeal alpha subunit/eukaryotic subunit 5

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 56  LQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGI 114
           L   LQ  +  +++ L  Q   L+A I ++E  ++ +  L+   EG E L     V  G 
Sbjct: 4   LAAELQILQQ-QVESLQAQIAALRALIAELETAIETLEDLK-GAEGKETLVP---VGAGS 58

Query: 115 FSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQ 171
           F +A+++DTD V + +G+   +E   +EA   L+K +E  + ++E L   L  L  +
Sbjct: 59  FVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASR 115

Members of this protein family, rich in coiled coil regions, are molecular chaperones in the class of the prefoldin (GimC) alpha subunit. Prefoldin is a hexamer of two alpha and four beta subunits. This protein appears universal in the archaea but is restricted to Aquifex aeolicus among bacteria so far. Eukaryotes have several related proteins; only prefoldin subunit 5, which appeared the most similar to archaeal prefoldin alpha, is included in this model. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil [Protein fate, Protein folding and stabilization]. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	100.0
PRK03947	140	prefoldin subunit alpha; Reviewed	99.95
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.94
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.93
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.88
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	99.87
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	99.82
PRK14011	144	prefoldin subunit alpha; Provisional	99.81
PRK01203	130	prefoldin subunit alpha; Provisional	99.74
KOG3048	153	consensus Molecular chaperone Prefoldin, subunit 5	99.16
KOG3047	157	consensus Predicted transcriptional regulator UXT	99.05
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	98.36
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	98.3
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	97.84
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	97.56
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	96.85
PRK09343	121	prefoldin subunit beta; Provisional	96.8
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	96.63
KOG3130	514	consensus Uncharacterized conserved protein [Funct	96.36
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	96.26
PRK03947	140	prefoldin subunit alpha; Reviewed	96.2
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	95.69
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	88.72

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-58  Score=374.23  Aligned_cols=158  Identities=53%  Similarity=0.819  Sum_probs=151.7

Q ss_pred             CCCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCC
Q 030290           23 TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGE  102 (180)
Q Consensus        23 ~~~~~gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e  102 (180)
                      .+++||||+|+|||||++|+++|+......++.||+.|+||||||.++.+++.+|+.|||||+++|++|+.|.++++.++
T Consensus         9 ~k~~rGIPeA~fiedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~   88 (187)
T KOG3313|consen    9 SKNARGIPEAKFIEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGE   88 (187)
T ss_pred             hhccCCCChhHHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCc
Confidence            68999999999999999999999833333499999999999999999999999999999999999999999999988888


Q ss_pred             ceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeecC
Q 030290          103 ALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN  180 (180)
Q Consensus       103 ~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~~  180 (180)
                      .++++|.|+||+|+||.|||+++||||||||||+||+++||.+||++|+.+++++++.+++||+||||||||||||||
T Consensus        89 s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEVN~A  166 (187)
T KOG3313|consen   89 SFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEVNMA  166 (187)
T ss_pred             ceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeeeeee
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999996

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.95  E-value=2e-26  Score=179.90  Aligned_cols=123  Identities=29%  Similarity=0.371  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEE
Q 030290           49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL  128 (180)
Q Consensus        49 ~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~L  128 (180)
                      .++-++.++++|++|+++...|.+++..|...+++++.++++|+.|..+   .++.+++||||+++|++|+|+++++|+|
T Consensus         4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~---~~~~e~lvplg~~~yv~~~v~~~~kV~v   80 (140)
T PRK03947          4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSK---GEGKETLVPIGAGSFVKAKVKDKDKVIV   80 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence            4567899999999999999999999999999999999999999999864   3569999999999999999999999999


Q ss_pred             EeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290          129 WLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI  174 (180)
Q Consensus       129 wLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt  174 (180)
                      |||+||||||+++||+++|++|++.+.++++.+.+++.++++++.-
T Consensus        81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~  126 (140)
T PRK03947         81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ  126 (140)
T ss_pred             EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999753

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.94  E-value=2e-26  Score=176.73  Aligned_cols=118  Identities=26%  Similarity=0.348  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (180)
Q Consensus        54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn  133 (180)
                      +.+..++++|+.+...|++++..|...+++++.++++|+.|..+    ++.+++||||+++|++|+|+++++|+||||+|
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~----~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g   77 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA----EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSG   77 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCC
Confidence            57889999999999999999999999999999999999999753    46899999999999999999999999999999


Q ss_pred             eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccee
Q 030290          134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT  175 (180)
Q Consensus       134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~  175 (180)
                      ||||++++||+++|++|++.+.++++.+.+++.++++|++..
T Consensus        78 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i  119 (126)
T TIGR00293        78 YYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL  119 (126)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999864

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.93  E-value=9.3e-25  Score=168.03  Aligned_cols=123  Identities=25%  Similarity=0.346  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (180)
Q Consensus        54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn  133 (180)
                      +.++..+++|+..-..+++++..|+..++++..++++|+.|...   ..+.+++||||+++|++|+|+++++||||||+|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g   78 (129)
T cd00584           2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKA---DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTG   78 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCC
Confidence            57889999999999999999999999999999999999999763   457999999999999999999999999999999


Q ss_pred             eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeec
Q 030290          134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC  179 (180)
Q Consensus       134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~  179 (180)
                      ||||+++++|+++|++|++.++++++++++++.+++++++.++.++
T Consensus        79 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l  124 (129)
T cd00584          79 YYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL  124 (129)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887654

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.88  E-value=1.6e-21  Score=148.44  Aligned_cols=123  Identities=31%  Similarity=0.367  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (180)
Q Consensus        54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn  133 (180)
                      +.+...+++|+..-..+++++..+...+.+++.+++.|+.|...   .++.+..+|+|+++|++|+|+++++|++|||+|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~   78 (129)
T cd00890           2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKA---EEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTG   78 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCeEEEecCCceEEEEEECCCCEEEEEecCC
Confidence            56788899999999999999999999999999999999999864   456788999999999999999999999999999


Q ss_pred             eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeec
Q 030290          134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC  179 (180)
Q Consensus       134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~  179 (180)
                      ++||+++++|.++|+++++.+++.++.+++++.+++++++.++.+|
T Consensus        79 ~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l  124 (129)
T cd00890          79 VYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL  124 (129)
T ss_pred             EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998876654

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=99.87  E-value=6.3e-22  Score=149.60  Aligned_cols=113  Identities=25%  Similarity=0.320  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHH
Q 030290           63 YKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE  142 (180)
Q Consensus        63 Yk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldE  142 (180)
                      |+..-+++++++..|+..+.++..++++|+.|..   ...+.++++|||+++|++|+|+++++|+||||+|+++|+|++|
T Consensus         1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~---~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~e   77 (120)
T PF02996_consen    1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKK---EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEE   77 (120)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHH
Confidence            3444568899999999999999999999999987   2467999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeee
Q 030290          143 ATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVV  178 (180)
Q Consensus       143 A~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn  178 (180)
                      |+++|++|++.+++.++.+.+.+..++++++.++-.
T Consensus        78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~  113 (120)
T PF02996_consen   78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQT  113 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876543

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=6.5e-19  Score=140.12  Aligned_cols=121  Identities=27%  Similarity=0.382  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEe
Q 030290           51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL  130 (180)
Q Consensus        51 ~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwL  130 (180)
                      .-++.+...|+-|+..-+.|++++..|...+.++..++++|+.++..   +++-+++||+|.++|++|+|.++|+|+|.|
T Consensus         6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~---~~g~E~LVpvGag~fv~~kv~~~~kviV~i   82 (145)
T COG1730           6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGA---GEGKEVLVPVGAGLFVKAKVKDMDKVIVSI   82 (145)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCceEEEEcCCCceEEEEeccCceEEEEc
Confidence            45678888999999999999999999999999999999999999875   225599999999999999999999999999


Q ss_pred             ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290          131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI  174 (180)
Q Consensus       131 GAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt  174 (180)
                      |+||++|.+++||+++|++|++.+++.+.++++.|+.|-..++.
T Consensus        83 Gsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~  126 (145)
T COG1730          83 GSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQ  126 (145)
T ss_pred             CCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887754

>PRK14011 prefoldin subunit alpha; Provisional

Probab=99.81  E-value=7.4e-19  Score=139.64  Aligned_cols=117  Identities=19%  Similarity=0.223  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEec
Q 030290           52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG  131 (180)
Q Consensus        52 ~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLG  131 (180)
                      -++.+...|+.|+..-+.|++++..|+.-+.++..++++|+.+.      .+.++++|||+++|++|+|.++|+|+|.||
T Consensus         4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~------~~~eiLVPLg~s~yV~g~i~d~dkVlVdIG   77 (144)
T PRK14011          4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK------TSEEILIPLGPGAFLKAKIVDPDKAILGVG   77 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCeEEEEcCCCcEEeEEecCCCeEEEEcc
Confidence            46788888999999999999999999999999999999999664      358899999999999999999999999999


Q ss_pred             cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290          132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI  174 (180)
Q Consensus       132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt  174 (180)
                      +|++||.+++||++++++|++.++++.+++.+.|+.+++++..
T Consensus        78 tGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~  120 (144)
T PRK14011         78 SDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITK  120 (144)
T ss_pred             CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988764

>PRK01203 prefoldin subunit alpha; Provisional

Probab=99.74  E-value=9.4e-17  Score=125.68  Aligned_cols=115  Identities=17%  Similarity=0.261  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccce
Q 030290           55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANV  134 (180)
Q Consensus        55 ~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnV  134 (180)
                      .+.+.|+-|+.+-+.|++++..|+..+.++..+++.|+.+..    .++-++++|||.++|++|+|.++++|+|.+|+|+
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~----~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy   79 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNEL----DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV   79 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe
Confidence            456778889999999999999999999999999999988652    3458999999999999999999999999999999


Q ss_pred             eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290          135 MLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT  173 (180)
Q Consensus       135 mvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT  173 (180)
                      +||.+.++|+++|+++++.+++.+......+..|.+++-
T Consensus        80 ~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~  118 (130)
T PRK01203         80 YIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYN  118 (130)
T ss_pred             EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988864

>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.4e-09  Score=86.47  Aligned_cols=111  Identities=14%  Similarity=0.171  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccce
Q 030290           55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANV  134 (180)
Q Consensus        55 ~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnV  134 (180)
                      +|.+.-+++-+--..++..+..|..-..-..++++.|+.++..   .++-+.+|||+..+|+.+++.+.++++|.+|-|+
T Consensus        17 QL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~---~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGY   93 (153)
T KOG3048|consen   17 QLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAA---NEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGY   93 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCCeEEEecccceeccceeccccceeEeccCce
Confidence            3334334444333455555555555555666677777777654   6779999999999999999999999999999999


Q ss_pred             eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290          135 MLEYSCDEATVLLQKNLENAKASLEVLIADLQFL  168 (180)
Q Consensus       135 mvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~l  168 (180)
                      +||.+.++|+++.+++++-+.+++++++.-+..=
T Consensus        94 yVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK  127 (153)
T KOG3048|consen   94 YVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEK  127 (153)
T ss_pred             EEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998876543

>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]

Probab=99.05  E-value=2.1e-09  Score=84.58  Aligned_cols=95  Identities=16%  Similarity=0.219  Sum_probs=80.4

Q ss_pred             HhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHH
Q 030290           78 QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKAS  157 (180)
Q Consensus        78 ~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~  157 (180)
                      +.+..+.-+.-.+++.|...  +..+++...+||+++|+...||+|++|+|-||-+|+||.++.||+++..++...++.-
T Consensus        43 ~eQ~aeY~kLk~t~eRL~ea--ahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~DRK~dlLkel  120 (157)
T KOG3047|consen   43 QEQCAEYAKLKFTCERLLEA--AHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFCDRKMDLLKEL  120 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--chhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHHHHhHHHHHHH
Confidence            33344444445566666654  2456889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcce
Q 030290          158 LEVLIADLQFLRDQVTI  174 (180)
Q Consensus       158 l~~~~edL~~lrdQiTt  174 (180)
                      .++++.|--.|+..|+.
T Consensus       121 ~ekLqKdsmkiKa~ihM  137 (157)
T KOG3047|consen  121 MEKLQKDSMKIKADIHM  137 (157)
T ss_pred             HHHHHHhHHHHHHHHHH
Confidence            99999999999988864

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=98.36  E-value=1.6e-06  Score=64.94  Aligned_cols=96  Identities=20%  Similarity=0.250  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (180)
Q Consensus        54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn  133 (180)
                      +.+...|++|+..-..+.+++..|...+-+.+.+++.|..|..                          ..+||..+|. 
T Consensus         2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~--------------------------d~~vy~~VG~-   54 (105)
T cd00632           2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLAD--------------------------DAEVYKLVGN-   54 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------------------cchHHHHhhh-
Confidence            4567778888888889999999999999999999998888742                          2344444443 


Q ss_pred             eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290          134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ  176 (180)
Q Consensus       134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E  176 (180)
                      |+|+.|.++|...|+++++.++..++.++..+..+..++.-.+
T Consensus        55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk   97 (105)
T cd00632          55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ   97 (105)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876543

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=98.30  E-value=6e-06  Score=62.42  Aligned_cols=98  Identities=21%  Similarity=0.267  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEec
Q 030290           52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG  131 (180)
Q Consensus        52 ~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLG  131 (180)
                      -++.+...|++|+..-..+.+++..|...+-+.+.+++.++.|.                          |..+||-.+|
T Consensus         4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~--------------------------~d~~vyk~VG   57 (110)
T TIGR02338         4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP--------------------------DDTPVYKSVG   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHHHhc
Confidence            45667777888888888999999999999999999999888874                          2345666666


Q ss_pred             cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290          132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ  176 (180)
Q Consensus       132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E  176 (180)
                      . |+|+.+.+||+.-|+++++.++..++.+++.+.+++.++.-++
T Consensus        58 ~-vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q  101 (110)
T TIGR02338        58 N-LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQ  101 (110)
T ss_pred             h-hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 9999999999999999999999999999999999999886543

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=97.84  E-value=0.00088  Score=48.95  Aligned_cols=92  Identities=18%  Similarity=0.316  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeee
Q 030290           58 ERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLE  137 (180)
Q Consensus        58 e~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvE  137 (180)
                      ..++.++..-..+.+++..|..++-+++.+++.|..|.                          |..+||..+| +++|+
T Consensus         5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~--------------------------~~~~~y~~vG-~~fv~   57 (106)
T PF01920_consen    5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLD--------------------------DDRKVYKSVG-KMFVK   57 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--------------------------TT-EEEEEET-TEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------------------CcchhHHHHh-HHHHH
Confidence            33444444444666777778888888888877777653                          3346666664 68999


Q ss_pred             eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290          138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ  176 (180)
Q Consensus       138 y~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E  176 (180)
                      .+.+++...|+++++.++..++.+...+.++..++.-.+
T Consensus        58 ~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~   96 (106)
T PF01920_consen   58 QDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELK   96 (106)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998876543

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=97.56  E-value=0.00045  Score=52.22  Aligned_cols=111  Identities=17%  Similarity=0.183  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhh----------cCCCceeEEEEcCcceeEEEE
Q 030290           50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK----------EGGEALTADFEVSEGIFSRAR  119 (180)
Q Consensus        50 e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~----------~~~e~~et~f~L~d~~y~kA~  119 (180)
                      ...++.+++.+++++..-..+..++..++.-+..++..-+......--.          .-.++-++.++||.|+|++..
T Consensus         5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~   84 (129)
T cd00890           5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKS   84 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEec
Confidence            3456777888888888777777777777666555555543322221100          001457799999999999999


Q ss_pred             eCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290          120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT  173 (180)
Q Consensus       120 I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT  173 (180)
                      +++.             +-.+++.++.|+++++.+++.+..+...+..++.++.
T Consensus        85 ~~eA-------------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~  125 (129)
T cd00890          85 LEEA-------------IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ  125 (129)
T ss_pred             HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8766             3679999999999999999999999999999998874

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.0055  Score=48.49  Aligned_cols=93  Identities=15%  Similarity=0.209  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (180)
Q Consensus        54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn  133 (180)
                      +.++..|+.|+...+.|.+.+..|.....|..--+++|+.|.                          |+.++|= +=.|
T Consensus        18 ~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~d--------------------------p~RKCfR-mIgG   70 (140)
T KOG4098|consen   18 QAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLD--------------------------PTRKCFR-MIGG   70 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--------------------------hhhHHHH-Hhcc
Confidence            578889999999999999999999999999999998888874                          2233333 3358


Q ss_pred             eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290          134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT  173 (180)
Q Consensus       134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT  173 (180)
                      |-|||++.|-+=.|+.|++.++..+..+.++|......++
T Consensus        71 vLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kEln  110 (140)
T KOG4098|consen   71 VLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELN  110 (140)
T ss_pred             chhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999877655443

>PRK09343 prefoldin subunit beta; Provisional

Probab=96.80  E-value=0.0061  Score=47.01  Aligned_cols=100  Identities=18%  Similarity=0.225  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEE
Q 030290           50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLW  129 (180)
Q Consensus        50 e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~Lw  129 (180)
                      .+-++..-..|++++..-..+.+++..|...+-+.+.+++-++.|..                          ..+||-.
T Consensus         6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~--------------------------d~~VYk~   59 (121)
T PRK09343          6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPD--------------------------DTPIYKI   59 (121)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------------------cchhHHH
Confidence            34445555556666666668888999999999999999888877642                          2356666


Q ss_pred             eccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290          130 LGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ  176 (180)
Q Consensus       130 LGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E  176 (180)
                      +| .|+|--|.+||+.-|++|++.++..++.++....+++.++.-.+
T Consensus        60 VG-~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q  105 (121)
T PRK09343         60 VG-NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQ  105 (121)
T ss_pred             hh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65 57788899999999999999999999999999999888876544

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.011  Score=45.92  Aligned_cols=92  Identities=25%  Similarity=0.335  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (180)
Q Consensus        54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn  133 (180)
                      +..-..|++++..-+.+..++..++..+-|++++|+-|+.|...      -                    .||-.+| |
T Consensus         9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD------~--------------------~vYk~VG-~   61 (119)
T COG1382           9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDED------A--------------------PVYKKVG-N   61 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------c--------------------HHHHHhh-h
Confidence            33334445555555677889999999999999999988887531      1                    2333333 3


Q ss_pred             eeeeeCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290          134 VMLEYSCDEA-------TVLLQKNLENAKASLEVLIADLQFLRDQV  172 (180)
Q Consensus       134 VmvEy~ldEA-------~~lL~~~l~~a~~~l~~~~edL~~lrdQi  172 (180)
                      +.|.-+-++|       .++|+.|++.++++.+.+++.++.|+..|
T Consensus        62 llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i  107 (119)
T COG1382          62 LLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI  107 (119)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444       55666666666666667777777766654

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.014  Score=53.76  Aligned_cols=90  Identities=19%  Similarity=0.269  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 030290           83 DIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLI  162 (180)
Q Consensus        83 ei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~  162 (180)
                      +..+.++-+..|-++-    ...+++|||.-.|+-.++--|..|.+.+|+|++-+-+.--|.++++.|++.+.++++.+.
T Consensus        28 dye~~~erl~~~~kkL----s~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A~~I~~~R~~~~r~q~~~l~  103 (514)
T KOG3130|consen   28 DYEALRERLSTLPKKL----SYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQAVGIVEHRKEHVRKQIDDLK  103 (514)
T ss_pred             hHHHHHHHHHHhhhhc----ccceeeecccccccccceeeechhhhhhccchHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666776542    488999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhcceee
Q 030290          163 ADLQFLRDQVTITQ  176 (180)
Q Consensus       163 edL~~lrdQiTt~E  176 (180)
                      ..+.-+-.++..++
T Consensus       104 ~~~~n~~~~vkf~~  117 (514)
T KOG3130|consen  104 KVMKNFESRVKFTE  117 (514)
T ss_pred             HHHHhhHHHhhhcc
Confidence            88888777776543

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=96.26  E-value=0.028  Score=42.89  Aligned_cols=106  Identities=14%  Similarity=0.196  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhc--------------CCCceeEEEEcCccee
Q 030290           50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKE--------------GGEALTADFEVSEGIF  115 (180)
Q Consensus        50 e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~--------------~~e~~et~f~L~d~~y  115 (180)
                      ...++.++..++..+..-..+..++..+..-+..+    +.+.......+              -.+.-++.++||+|+|
T Consensus         5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l----~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~   80 (129)
T cd00584           5 AAQLQVLQQEIEELQQELARLNEAIAEYEQAKETL----ETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY   80 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Confidence            34566777777777777777777777776555444    44443222211              1234778999999999


Q ss_pred             EEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290          116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV  172 (180)
Q Consensus       116 ~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi  172 (180)
                      +.-.++...             -.++.-++.|+++++.+++.+..+...+..+.+.+
T Consensus        81 vE~~~~eA~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l  124 (129)
T cd00584          81 VEKDLEEAI-------------EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL  124 (129)
T ss_pred             EEecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998655             46899999999999999999999999999998865

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=96.20  E-value=0.044  Score=42.57  Aligned_cols=100  Identities=16%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeee
Q 030290           58 ERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLE  137 (180)
Q Consensus        58 e~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvE  137 (180)
                      ..++++..+-..++++...|..++..+...+.-++.....      ++         +.++. .+..+|++-||+++++.
T Consensus         6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~------l~---------~l~~~-~~~~e~lvplg~~~yv~   69 (140)
T PRK03947          6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKET------LE---------ELKSK-GEGKETLVPIGAGSFVK   69 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------hhccc-CCCCeEEEEcCCCcEEE
Confidence            3444555555556777777888888777777766655432      22         11221 14567888888888887


Q ss_pred             eCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290          138 YSCDEATV-------------LLQKNLENAKASLEVLIADLQFLRDQVT  173 (180)
Q Consensus       138 y~ldEA~~-------------lL~~~l~~a~~~l~~~~edL~~lrdQiT  173 (180)
                      -++.+..+             -+.+-++.++++++.+++.++.+.+++.
T Consensus        70 ~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~  118 (140)
T PRK03947         70 AKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQ  118 (140)
T ss_pred             EEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77765544             4567777777777777777777777654

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=95.69  E-value=0.089  Score=39.98  Aligned_cols=96  Identities=18%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCH
Q 030290           61 QQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC  140 (180)
Q Consensus        61 ~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~l  140 (180)
                      +++..+-..+++++..|..++.++..++.-++....-      +..         .+..  +...+++-||+++++.-++
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~------L~~---------l~~~--~~~~~lv~lg~~~~v~~~v   64 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIET------LED---------LKGA--EGKETLVPVGAGSFVKAKV   64 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHh---------cccc--CCCeEEEEcCCCeEEEEEe
Confidence            3455555677778888888888888888877776532      211         1222  3468888889999888888


Q ss_pred             HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290          141 DEAT-------------VLLQKNLENAKASLEVLIADLQFLRDQVT  173 (180)
Q Consensus       141 dEA~-------------~lL~~~l~~a~~~l~~~~edL~~lrdQiT  173 (180)
                      ++..             .-+.+-++.++++++.+.+.++.|...+.
T Consensus        65 ~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~  110 (126)
T TIGR00293        65 KDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALA  110 (126)
T ss_pred             CCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8876             55677788888888888888888877653

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=88.72  E-value=3.9  Score=31.69  Aligned_cols=94  Identities=14%  Similarity=0.299  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEE
Q 030290           52 ALAFLQERLQQYKLVEMK---LLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL  128 (180)
Q Consensus        52 ~l~~lqe~~~kYk~me~~---l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~L  128 (180)
                      ..+.+++...||+.++..   +...+..|..++.+-+--++=+..|..                          ..+||=
T Consensus         3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~--------------------------d~~VYK   56 (120)
T KOG3478|consen    3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEE--------------------------DSNVYK   56 (120)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc--------------------------cchHHH
Confidence            456788888888888774   345566677777777766666666642                          234554


Q ss_pred             EeccceeeeeCHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290          129 WLGANVMLEYSCDEATV-------LLQKNLENAKASLEVLIADLQFLRDQV  172 (180)
Q Consensus       129 wLGAnVmvEy~ldEA~~-------lL~~~l~~a~~~l~~~~edL~~lrdQi  172 (180)
                      .+| .|-|--+++||+.       |+.+.++.+++++...+++....|+-+
T Consensus        57 liG-pvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v  106 (120)
T KOG3478|consen   57 LIG-PVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAV  106 (120)
T ss_pred             Hhc-chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 5888889999975       555556667777777777777776644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	2e-07
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	3e-06

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii} Length = 151

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 56  LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
           L    Q  +     L      L     +++   + +  L+  +E    +        G F
Sbjct: 14  LAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPI--GAGSF 71

Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173
            +  I D ++  + +G+   +E S DEA   L+K L+    +++     L  L  ++ 
Sbjct: 72  LKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIG 129

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 Length = 133

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 4/123 (3%)

Query: 51  SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEV 110
           +ALA +  +L  Y+     +  Q   ++A I ++E     ++ +Q  K+G E L     V
Sbjct: 1   AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ-GKDGSETLV---PV 56

Query: 111 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRD 170
             G F +A ++DT  V + +GA V ++ + ++A   ++      +++L+ +  +L+ + D
Sbjct: 57  GAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITD 116

Query: 171 QVT 173
            + 
Sbjct: 117 IMM 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.97
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.96
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	98.54
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	98.43
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	85.09
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	81.5

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.97  E-value=1.1e-30  Score=201.10  Aligned_cols=120  Identities=19%  Similarity=0.276  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEecc
Q 030290           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (180)
Q Consensus        53 l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGA  132 (180)
                      +++|++++++|+++...+++++..|+.++|++++++++|+.|..    .++.+++||||+++|++|+|+++++||||||+
T Consensus         3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~----~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~   78 (133)
T 1fxk_C            3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG----KDGSETLVPVGAGSFIKAELKDTSEVIMSVGA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence            67899999999999999999999999999999999999999975    35799999999999999999999999999999


Q ss_pred             ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290          133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ  176 (180)
Q Consensus       133 nVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E  176 (180)
                      |||||||++||+++|++|++.++.+++.+++++.+++++|++++
T Consensus        79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~  122 (133)
T 1fxk_C           79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLS  122 (133)
T ss_dssp             TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999864

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.96  E-value=1e-29  Score=200.19  Aligned_cols=125  Identities=19%  Similarity=0.228  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeE
Q 030290           50 NSALAFLQERLQQYKLVEMKLLAQQRDL---QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSV  126 (180)
Q Consensus        50 e~~l~~lqe~~~kYk~me~~l~~q~~~L---~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V  126 (180)
                      ++-++.|.+.+++|+++...+.+++..|   +.++||++++++.|+.|..     ++.+++||||+++|++|+|+|+++|
T Consensus         8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-----~~~~ilvplg~~~yv~g~i~~~~~V   82 (151)
T 2zdi_C            8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-----EKPEILVPIGAGSFLKGVIVDKNNA   82 (151)
T ss_dssp             TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----SSCEEEEECSSSCEEEEECSCTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCceEEEEcCCCeEEEEEECCCCEE
Confidence            4568999999999999999999999999   9999999999999998862     5689999999999999999999999


Q ss_pred             EEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeec
Q 030290          127 CLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC  179 (180)
Q Consensus       127 ~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~  179 (180)
                      +||||+|||||||++||+++|++|++.++.+++.+++++.+++++++++++++
T Consensus        83 ~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l  135 (151)
T 2zdi_C           83 IVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA  135 (151)
T ss_dssp             EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             EEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998875

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=98.54  E-value=6e-07  Score=66.33  Aligned_cols=99  Identities=17%  Similarity=0.279  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEec
Q 030290           52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG  131 (180)
Q Consensus        52 ~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLG  131 (180)
                      -++.+...|++|+..-..+.+++..++..+-+++.+++.|..|..                          ..+||.-+|
T Consensus         7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~--------------------------d~~vy~~iG   60 (117)
T 2zqm_A            7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPD--------------------------DAVVYKTVG   60 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT--------------------------TCCEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------------------CcHhHHHhh
Confidence            456666777778888888999999999999999988888777631                          224666666


Q ss_pred             cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeee
Q 030290          132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV  177 (180)
Q Consensus       132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EV  177 (180)
                       +|+|+.+.++|...|+++++.++..++.++..+.+++.++...+.
T Consensus        61 -~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~  105 (117)
T 2zqm_A           61 -TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA  105 (117)
T ss_dssp             -TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             999999999999999999999999999999999999998865543

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=98.43  E-value=3.1e-06  Score=61.60  Aligned_cols=97  Identities=20%  Similarity=0.234  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290           54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN  133 (180)
Q Consensus        54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn  133 (180)
                      +.....|++++..-..+.+++..++..+-+++.+++-|..|.                          +..+||--+| +
T Consensus         4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~--------------------------~d~~vy~~iG-~   56 (107)
T 1fxk_A            4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA--------------------------DDAEVYKSSG-N   56 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--------------------------TTCCEEEEET-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CCchHHHHHh-H
Confidence            444455566666666778888899999888888888877763                          2234555555 8


Q ss_pred             eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeee
Q 030290          134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV  177 (180)
Q Consensus       134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EV  177 (180)
                      |+|+.|.++|...|+++++.++..++.++..+.+++.++.-++.
T Consensus        57 vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~  100 (107)
T 1fxk_A           57 ILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV  100 (107)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988765543

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=85.09  E-value=2.3  Score=31.34  Aligned_cols=105  Identities=14%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhh-------------cCCCceeEEEEcCcceeEE
Q 030290           51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK-------------EGGEALTADFEVSEGIFSR  117 (180)
Q Consensus        51 ~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~-------------~~~e~~et~f~L~d~~y~k  117 (180)
                      ..++.++...+.+...-..+...+..++.-+..++.    +..-....             .-.+.-++.+.||.|+|+.
T Consensus         8 ~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~----l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE   83 (133)
T 1fxk_C            8 AQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD----IQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK   83 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEE
Confidence            345666666666666666666666655544444433    33111211             0123356999999999999


Q ss_pred             EEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290          118 ARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV  172 (180)
Q Consensus       118 A~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi  172 (180)
                      -.++....             -++.=++.|+.+++.+++.+..+++.+.-+.+++
T Consensus        84 ~~~~eA~~-------------~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l  125 (133)
T 1fxk_C           84 KNFEDAME-------------SIKSQKNELESTLQKMGENLRAITDIMMKLSPQA  125 (133)
T ss_dssp             EEHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98875332             3566677778888888888888887777777665

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=81.50  E-value=26  Score=30.45  Aligned_cols=97  Identities=23%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             ccccHHHHhccCCcCHHHHHHHHHHH----HHHHHHHHH------HHHHHHHHHHhchhhHHHHHHHHHH----HHhhhc
Q 030290           34 FVEDVQTFLSQLDLDVNSALAFLQER----LQQYKLVEM------KLLAQQRDLQAKIPDIEKCLDIVAT----LQAKKE   99 (180)
Q Consensus        34 FiedV~~~~~~~~~~~e~~l~~lqe~----~~kYk~me~------~l~~q~~~L~~kipei~~aLe~v~~----L~~k~~   99 (180)
                      +-+-+..++... .+++++++.++..    +.+++...+      .|++++.+++...+++++--.++.+    |+..  
T Consensus       357 ~~~~~~~vl~G~-~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  433 (471)
T 3mq9_A          357 VRTAVINAASGR-QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS--  433 (471)
T ss_dssp             HHHHHHHHHHSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH--
Confidence            334455555443 5888888766655    455554433      5777777777777777765554443    3221  


Q ss_pred             CCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290          100 GGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT  173 (180)
Q Consensus       100 ~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT  173 (180)
                                                          +|.....    -.+|+++++..+.++++.|..++.||.
T Consensus       434 ------------------------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (471)
T 3mq9_A          434 ------------------------------------LDAEKAQ----GQKKVEELEGEITTLNHKLQDASAEVE  467 (471)
T ss_dssp             ------------------------------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                1111111    225888888888888888888888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	180
d1fxkc_	133	a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Met	3e-15

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 133

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 66.5 bits (162), Expect = 3e-15
 Identities = 25/127 (19%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 51  SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEV 110
           +ALA +  +L  Y+     +  Q   ++A I ++E     ++ +Q K            V
Sbjct: 1   AALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGS----ETLVPV 56

Query: 111 SEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRD 170
             G F +A ++DT  V + +GA V ++ + ++A   ++      +++L+ +  +L+ + D
Sbjct: 57  GAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITD 116

Query: 171 QVTITQV 177
            +     
Sbjct: 117 IMMKLSP 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	180
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.89
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	97.69
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	88.74

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=1.4e-22  Score=153.46  Aligned_cols=120  Identities=20%  Similarity=0.288  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEecc
Q 030290           53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (180)
Q Consensus        53 l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGA  132 (180)
                      |+.|...++.|+..-..+++++..++..++|+..++++|+.|..+    ++.+++||||+++|++|+|+++++|+||||+
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~----~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~   78 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGK----DGSETLVPVGAGSFIKAELKDTSEVIMSVGA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCeEEEEcCCceEEEEEecCCCceEEEecC
Confidence            677888899999999999999999999999999999999999753    4578999999999999999999999999999


Q ss_pred             ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290          133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ  176 (180)
Q Consensus       133 nVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E  176 (180)
                      ||+||+++++|+++|++|++.+++.++.+.+++..++++|+.++
T Consensus        79 g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~  122 (133)
T d1fxkc_          79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLS  122 (133)
T ss_dssp             TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998654

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.69  E-value=0.00058  Score=48.39  Aligned_cols=92  Identities=20%  Similarity=0.290  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEecc
Q 030290           56 LQERLQQYKLVEM---KLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA  132 (180)
Q Consensus        56 lqe~~~kYk~me~---~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGA  132 (180)
                      +++.+.+|+.+..   .+.+++..|...+-+.+.+++.|+.+.                          |..+||=-+| 
T Consensus         3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~--------------------------~d~~vyk~vG-   55 (107)
T d1fxka_           3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA--------------------------DDAEVYKSSG-   55 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--------------------------TTCCEEEEET-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------cccHHHHHhc-
Confidence            3444444444444   666889999999999999988877653                          3345555555 


Q ss_pred             ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290          133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI  174 (180)
Q Consensus       133 nVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt  174 (180)
                      +|+|+-+.+|+..-|.++++.++..++.+...+..++.++..
T Consensus        56 ~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~   97 (107)
T d1fxka_          56 NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQE   97 (107)
T ss_dssp             TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999998888888888888888777654

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.74  E-value=1.9  Score=29.93  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=42.8

Q ss_pred             CceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290          102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV  172 (180)
Q Consensus       102 e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi  172 (180)
                      +.-+..++||.|+|+.-.+++.-            +| ++.=++.|+++++.+.+.++.+...+..+..++
T Consensus        68 ~~~~vlV~lG~g~~vE~~~~eA~------------~~-l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~  125 (133)
T d1fxkc_          68 DTSEVIMSVGAGVAIKKNFEDAM------------ES-IKSQKNELESTLQKMGENLRAITDIMMKLSPQA  125 (133)
T ss_dssp             STTEEEEEEETTEEEEEEHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCeeeeecHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35779999999999998877543            22 555567777788888888877777777776654