Citrus Sinensis ID: 030294

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHccccccccEEEEcEEEEcHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHccccccHHHHHHccccHHHHEEEccEEEEcHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdlyrsnnftgeklreknlswvdIFEEIPVKVSNSALISAFMTelepdtpvtqrdydrlqlssspflERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKArkaageeplpeedpsnpifkpipepprlesFLIANRIANYCnqingvtgqSFSRLYLTKALHDN
Flexible Loop (DISEMBL)
mdlyrsnnftgeklreknlswvDIFEEIPVKVSNSALISAFMTelepdtpvtqrdyDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKArkaageeplpeedpsnpiFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Low Complexity Region (SEG)
MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Disordered region (IsUnstruct)
***************EKNLSWVDIFEEIPVKVSNSALISAFMTEL*******************PFLERNMEFLIECMDDLSVEQQKFQFYYRSL***********************************************LESFLIANRIANYCNQINGVTGQSFSRLYLTK*****
Disordered Region (DISOPRED)
*DLY**NNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEP**************SSSPFLERNMEFLIECMDDLSVEQQKFQFYYR**************************************PIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKA****
Disordered Region (DISEMBL)
MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSL*********************************PSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Disordered Region (DISPRO)
*DLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDT**TQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9C5Z2	337	Eukaryotic translation in	yes	no	1.0	0.531	0.810	3e-82
A7SA47	332	Eukaryotic translation in	N/A	no	0.983	0.530	0.382	1e-34
B5RI54	344	Eukaryotic translation in	N/A	no	0.988	0.514	0.374	2e-28
Q5PPY6	334	Eukaryotic translation in	N/A	no	0.983	0.526	0.370	2e-28
Q6P381	335	Eukaryotic translation in	yes	no	0.983	0.525	0.370	1e-27
Q9GV27	337	Eukaryotic translation in	N/A	no	0.972	0.516	0.369	1e-26
B5FY35	348	Eukaryotic translation in	yes	no	0.983	0.505	0.370	5e-26
A9V3P1	354	Eukaryotic translation in	N/A	no	0.955	0.483	0.344	1e-25
Q6AXJ2	335	Eukaryotic translation in	yes	no	0.988	0.528	0.374	1e-25
A1CQB4	365	Eukaryotic translation in	N/A	no	0.972	0.476	0.335	1e-25

>sp|Q9C5Z2|EIF3H_ARATH Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2

 Score =  303 bits (776), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 145/179 (81%), Positives = 164/179 (91%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYR  NFTGEKLREKN SW+DIFEEIP+KVSNSAL+SAFMTELE DTPV+Q DYDRL 
Sbjct: 159 MELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLH 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
            S++PFLE NMEFLI+CMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AG
Sbjct: 219 SSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           EEPLPEEDPSNPIFK IPEP RLESFLI N+++N+C QINGV GQ+FSRLYLTKALHDN
Sbjct: 279 EEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVAGQNFSRLYLTKALHDN 337

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Arabidopsis thaliana (taxid: 3702)

>sp|A7SA47|EIF3H_NEMVE Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis GN=v1g168210 PE=3 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 118/178 (66%), Gaps = 2/178 (1%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M LY+   F+ +KL +  +S+  +F+EIP+ + NS+L++  + EL+ +TP    D   L 
Sbjct: 154 MKLYKDGEFSADKLSKAGISFHSMFQEIPLVIKNSSLMNVLLCELDENTPTPSAD-QFLT 212

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+  +LE+N+  L+E +D+L  +  K+  Y RS+ RQQ Q++++LQ+R+ EN++R   G
Sbjct: 213 LSTGSYLEKNVRVLMESVDELCQDSNKYHNYQRSVIRQQQQKENYLQRRQQENQSRIQRG 272

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
           E+PLP+ED S  +FKP+P P RL++ L++ ++  YC  ++  + QSF + +L +AL D
Sbjct: 273 EDPLPDEDLSK-MFKPLPVPSRLDNLLLSEQVNTYCQHVHQFSTQSFGKFFLAQALQD 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Nematostella vectensis (taxid: 45351)

>sp|B5RI54|EIF3H_SALSA Eukaryotic translation initiation factor 3 subunit H OS=Salmo salar GN=eif3h PE=2 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 114/179 (63%), Gaps = 2/179 (1%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M++ +  +F+ E L++  + +  +FEE+P+ + NS LI+  M ELE    V  + ++ L 
Sbjct: 166 MEICKEKDFSAEGLKKAMIGFEHMFEEVPIVIKNSHLINVLMWELEEKCTVADK-HELLN 224

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+  + Q+R+ EN  R+  G
Sbjct: 225 LSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYSRNLSKQQQQKHQYTQRRQQENAQRQTRG 284

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           E PLPEED S  +FKP   PPR+++ LIA +I NYC  +   T Q+  +L++ +AL  +
Sbjct: 285 ETPLPEEDVSK-MFKPPQPPPRMDTLLIAGQINNYCQNVKEFTSQNLGKLFMAEALQGH 342

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Salmo salar (taxid: 8030)

>sp|Q5PPY6|EIF3H_XENLA Eukaryotic translation initiation factor 3 subunit H OS=Xenopus laevis GN=eif3h PE=2 SV=1

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 116/178 (65%), Gaps = 2/178 (1%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+  + EL+   PVT++ ++ L 
Sbjct: 156 MEICKEKDFSAEGLKKANVAYEDMFEEVPIVIKNSHLINVLVWELDKKAPVTEK-HELLN 214

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LSSS  LE++++ L++ +D++S +  K+  Y R++ +QQ Q+  + Q+++ EN  R + G
Sbjct: 215 LSSSNHLEKSLQLLMDRVDEMSQDIVKYNTYQRNVGKQQQQKHQYTQRKQQENLQRLSRG 274

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
           E PLPEED  N +FKP   P R++  LIA +I  Y   I G T Q+  +L++ +AL D
Sbjct: 275 ETPLPEED-VNKMFKPPVTPSRMDPLLIAGQINTYIQHIKGFTSQNLGKLFMAEALQD 331

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus laevis (taxid: 8355)

>sp|Q6P381|EIF3H_XENTR Eukaryotic translation initiation factor 3 subunit H OS=Xenopus tropicalis GN=eif3h PE=2 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 116/178 (65%), Gaps = 2/178 (1%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+    EL+   PVT++ ++ L 
Sbjct: 157 MEVCKEKDFSAEGLKKANIAFEDMFEEVPIIIKNSHLINVLAWELDKKAPVTEK-HELLN 215

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LSSS  LE++++ L++ +D+LS +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ G
Sbjct: 216 LSSSNHLEKSLQLLMDRVDELSQDIVKYNTYLRNISKQQQQKHQYTQRRQQENLQRQSRG 275

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
           E  LPEED  N +FKP   P R++S LIA +I  Y   I   T Q+  +L++ +A+ D
Sbjct: 276 ETSLPEED-VNKLFKPPVPPSRMDSLLIAGQINTYIQHIKEFTSQNLGKLFMAEAMQD 332

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus tropicalis (taxid: 8364)

>sp|Q9GV27|EIF3H_BOMMO Eukaryotic translation initiation factor 3 subunit H OS=Bombyx mori PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 2/176 (1%)

Query: 3   LYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLS 62
           +Y+  ++T E LR   + + ++F E+P+ + NS L +  ++EL    P  +     L L 
Sbjct: 156 MYKEGDYTPEALRNLKIGYENLFIEVPIVIRNSPLTNIMISELTEMIP-EEEGSKFLDLG 214

Query: 63  SSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEE 122
           ++  LE  +  L+E +D+L+ E  KF  Y + + RQQ  +  W+ KR  EN AR A  E 
Sbjct: 215 TASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDET 274

Query: 123 PLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
           PLPEED  N +FKP P PPRL   ++A +I  Y   I+    QS ++LYLT+AL +
Sbjct: 275 PLPEED-VNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLYLTQALQN 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Bombyx mori (taxid: 7091)

>sp|B5FY35|EIF3H_TAEGU Eukaryotic translation initiation factor 3 subunit H OS=Taeniopygia guttata GN=EIF3H PE=2 SV=1

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/178 (37%), Positives = 116/178 (65%), Gaps = 2/178 (1%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M++ +  +F+ E L++ N+++ ++FEE+P+ + NS LI+  + ELE  + V  R ++ L 
Sbjct: 170 MEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLS 228

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           L+SS  L ++++ L++ +D++S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ G
Sbjct: 229 LASSNHLGKSLQLLMDRVDEMSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENIQRQSRG 288

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
           E PLPEED  N +FKP   PPR+ES LIA +I  YC  I     Q+  +L++ +AL D
Sbjct: 289 EPPLPEED-INKLFKPPQPPPRMESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Taeniopygia guttata (taxid: 59729)

>sp|A9V3P1|EIF3H_MONBE Eukaryotic translation initiation factor 3 subunit H OS=Monosiga brevicollis GN=9558 PE=3 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 109/177 (61%), Gaps = 6/177 (3%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+L+ +++F  + +RE  L++  +FE++PV +  S++    + EL  +   ++  +DR+ 
Sbjct: 175 MELFSTDSFNPKAVREAGLTYRTVFEKVPVTIRASSMARLLIPELSANLDQSE-IFDRMD 233

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           L+++ F+ RN++ L+E +DDLS E  KFQ Y+R+ T+ +A   + L+ RR EN+  +A G
Sbjct: 234 LNATSFMSRNIKLLMEGIDDLSQEAYKFQQYHRNATKAKASLDAQLEARRAENEQLRAKG 293

Query: 121 EEPLPEEDPSNPIF-KPIPEPP-RLESFLIANRIANYCNQINGVTGQSFSRLYLTKA 175
              LPE+  +  +     P PP RL S L+  +I  +C Q++  +GQSF +LY+ KA
Sbjct: 294 ---LPEKSEAELVANHKTPTPPSRLGSLLVTAQINTFCKQVSDFSGQSFGKLYIAKA 347

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Monosiga brevicollis (taxid: 81824)

>sp|Q6AXJ2|EI3HA_DANRE Eukaryotic translation initiation factor 3 subunit H-A OS=Danio rerio GN=eif3ha PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 117/179 (65%), Gaps = 2/179 (1%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M++ +  +FT E L++  +++  +FEE+P+ + NS LI+  M +L+  + +  + ++ L 
Sbjct: 157 MEICKEKDFTPEGLKKAAVAYEHMFEEVPIFIKNSHLINVLMWDLQEKSTLADK-HELLN 215

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+Q + Q+R+ EN  R++ G
Sbjct: 216 LSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYCRNLSKQQQQKQQYQQRRQQENAQRQSRG 275

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           E PLPEED S  +FK    PPR+++ LIA +I NYC  I   T Q+  +L++ +AL  N
Sbjct: 276 EPPLPEEDISK-MFKAPQAPPRMDTLLIAGQINNYCQNIKEFTSQNLGKLFMAEALQSN 333

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Danio rerio (taxid: 7955)

>sp|A1CQB4|EIF3H_ASPCL Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ACLA_025520 PE=3 SV=1

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 23/197 (11%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE-PDTP--------- 50
           M  ++ N FT E+L++ NL + DIF E+PV++ NS LI++F+ +L+ P+ P         
Sbjct: 161 MTAFKENKFTSEELQKSNLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPTPTELPPSL 220

Query: 51  ------------VTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQ 98
                       +   +YD L LS  PFLE+N + L++ M+    E   FQ+Y RSL R+
Sbjct: 221 AALESGPFVNSTILAPNYDNLTLSIDPFLEKNCDLLLDSMETHHTETNNFQYYQRSLARE 280

Query: 99  QAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ 158
           Q +  +W QKR+ EN A +A  ++PL  ED    +FK   EP RL+S L + ++  Y  Q
Sbjct: 281 QQRISAWQQKRKQEN-ATRATLKQPLLPEDEWQRLFKLPQEPSRLDSMLNSRQVDQYARQ 339

Query: 159 INGVTGQSFSRLYLTKA 175
           ++     +  +++  K 
Sbjct: 340 VDSFVSATTGKMFAVKG 356

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
356568923	337	PREDICTED: eukaryotic translation initia	1.0	0.531	0.871	5e-85
359806280	339	uncharacterized protein LOC100795273 [Gl	1.0	0.528	0.871	6e-85
118481029	341	unknown [Populus trichocarpa]	1.0	0.524	0.871	6e-85
224128852	333	predicted protein [Populus trichocarpa]	1.0	0.537	0.871	6e-85
449468786	337	PREDICTED: eukaryotic translation initia	1.0	0.531	0.860	7e-85
225433688	337	PREDICTED: eukaryotic translation initia	1.0	0.531	0.843	3e-84
357502831	339	Eukaryotic translation initiation factor	0.994	0.525	0.848	3e-83
224065052	340	predicted protein [Populus trichocarpa]	1.0	0.526	0.854	4e-83
388498918	337	unknown [Lotus japonicus]	1.0	0.531	0.854	8e-83
18391211	337	translation initiation factor eIF-3 subu	1.0	0.531	0.810	2e-80

>gi|356568923|ref|XP_003552657.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Glycine max]

 Score =  318 bits (815), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 170/179 (94%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYRSNNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELEPDTPVTQ DYDRLQ
Sbjct: 159 MELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQ 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+S  +ERN EFLIECMDDLS+EQQKFQFYYRSL+RQQAQQQ+WLQKRR EN ARKAAG
Sbjct: 219 LSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRTENMARKAAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           EEPLPEEDPSNPIFKP+PEP RLESFLI N+I+NYCNQINGV+GQSF+RLYL KALH++
Sbjct: 279 EEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806280|ref|NP_001240962.1| uncharacterized protein LOC100795273 [Glycine max] gi|255647702|gb|ACU24312.1| unknown [Glycine max]

 Score =  318 bits (815), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 170/179 (94%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYRSNNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELEPDTPVTQ DYDRLQ
Sbjct: 161 MELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQ 220

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+S  +ERN EFLIECMDDLS+EQQKFQFYYRSL+RQQAQQQ+WLQKRR EN ARKAAG
Sbjct: 221 LSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAG 280

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           EEPLPEEDPSNPIFKP+PEP RLESFLI N+I+NYCNQINGV+GQSF+RLYL KALH++
Sbjct: 281 EEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481029|gb|ABK92468.1| unknown [Populus trichocarpa]

 Score =  318 bits (815), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 171/179 (95%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           MDLYR+NNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELE DTPVTQ DYDRLQ
Sbjct: 163 MDLYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEDDTPVTQCDYDRLQ 222

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+SP+LERN+EFLIECMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN +RKAAG
Sbjct: 223 LSTSPYLERNVEFLIECMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRSENMSRKAAG 282

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           EEPLPEEDP NPIFKPIPEP RL+SFLI N+IANYCNQINGV+GQSFSRLYL KALH+N
Sbjct: 283 EEPLPEEDPLNPIFKPIPEPSRLDSFLITNQIANYCNQINGVSGQSFSRLYLMKALHEN 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128852|ref|XP_002320437.1| predicted protein [Populus trichocarpa] gi|222861210|gb|EEE98752.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (815), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 156/179 (87%), Positives = 171/179 (95%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           MDLYR+NNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELE DTPVTQ DYDRLQ
Sbjct: 155 MDLYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEDDTPVTQCDYDRLQ 214

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+SP+LERN+EFLIECMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN +RKAAG
Sbjct: 215 LSTSPYLERNVEFLIECMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRSENMSRKAAG 274

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           EEPLPEEDP NPIFKPIPEP RL+SFLI N+IANYCNQINGV+GQSFSRLYL KALH+N
Sbjct: 275 EEPLPEEDPLNPIFKPIPEPSRLDSFLITNQIANYCNQINGVSGQSFSRLYLMKALHEN 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468786|ref|XP_004152102.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Cucumis sativus] gi|449521699|ref|XP_004167867.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Cucumis sativus]

 Score =  318 bits (814), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 154/179 (86%), Positives = 170/179 (94%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYR+N+FTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELE D+PVTQ DYDRLQ
Sbjct: 159 MELYRTNSFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELESDSPVTQCDYDRLQ 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS++PF+ERN+EFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRR EN  RKAAG
Sbjct: 219 LSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRAENMTRKAAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           EEPLPEEDP+NPIFKP+PEP RL+S+LI N+IANYCNQINGV GQSF+RL+L KALHDN
Sbjct: 279 EEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433688|ref|XP_002266909.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera] gi|296089621|emb|CBI39440.3| unnamed protein product [Vitis vinifera]

 Score =  315 bits (808), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 151/179 (84%), Positives = 169/179 (94%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYR+NNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELE DTPVTQ DYDRLQ
Sbjct: 159 MELYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADTPVTQCDYDRLQ 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS++P++ERN+EFLIECMDDLS+EQQKFQFYYR+L+RQQ QQQ+WLQKRR EN ARK AG
Sbjct: 219 LSTNPYMERNLEFLIECMDDLSMEQQKFQFYYRNLSRQQGQQQAWLQKRRAENMARKTAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           E+PLPEEDP+NPIFKPIPEP RL+SFLI N+I+NYCNQINGV GQSFSRLYL KALH+N
Sbjct: 279 EDPLPEEDPANPIFKPIPEPSRLDSFLITNQISNYCNQINGVAGQSFSRLYLMKALHEN 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502831|ref|XP_003621704.1| Eukaryotic translation initiation factor 3 subunit [Medicago truncatula] gi|124360846|gb|ABN08818.1| Mov34-1 [Medicago truncatula] gi|355496719|gb|AES77922.1| Eukaryotic translation initiation factor 3 subunit [Medicago truncatula]

 Score =  312 bits (800), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 151/178 (84%), Positives = 168/178 (94%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYRSNNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELEPDTPVTQ D+DRLQ
Sbjct: 160 MELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDFDRLQ 219

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+S  +ERNMEFLIECMDDLS+EQQKFQF+YRSL+RQQAQQQ+WLQKRR +N AR+AAG
Sbjct: 220 LSTSSLMERNMEFLIECMDDLSIEQQKFQFHYRSLSRQQAQQQAWLQKRRADNMARRAAG 279

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
           EEPLPEEDP+NPIFKP+ EP RLESFLI N+I+NYCNQINGV GQSF+RLYL KALH+
Sbjct: 280 EEPLPEEDPANPIFKPLAEPSRLESFLITNQISNYCNQINGVAGQSFNRLYLLKALHE 337

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065052|ref|XP_002301647.1| predicted protein [Populus trichocarpa] gi|222843373|gb|EEE80920.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (799), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/179 (85%), Positives = 167/179 (93%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           MDLYR+NNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMT LE DTPVTQ DYDRLQ
Sbjct: 162 MDLYRNNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTGLEADTPVTQCDYDRLQ 221

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+SP+LE N+EFLIECMDDLSVEQQKFQ++YR+L+RQQAQQQ+WLQKRR EN  RKAAG
Sbjct: 222 LSTSPYLESNVEFLIECMDDLSVEQQKFQYHYRNLSRQQAQQQAWLQKRRSENMTRKAAG 281

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           EEPLPEEDPSNPIFKPIPEP RL SFLI N++ANYCNQINGV+GQSFSRLYL KALH +
Sbjct: 282 EEPLPEEDPSNPIFKPIPEPSRLGSFLITNQMANYCNQINGVSGQSFSRLYLMKALHKD 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498918|gb|AFK37525.1| unknown [Lotus japonicus]

 Score =  311 bits (797), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 153/179 (85%), Positives = 168/179 (93%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+ YRSNNFTGEKLREKNLSWVDIFEEIP+KVSNSALISAFMTELEPDTPVTQ DYDRLQ
Sbjct: 159 MEPYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQ 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS+S  LERN E+LIECMDDLS+EQQKFQ +YRSL+RQQAQQQ+WLQKRR EN ARKAAG
Sbjct: 219 LSTSSLLERNTEYLIECMDDLSLEQQKFQLHYRSLSRQQAQQQAWLQKRRTENMARKAAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           EEPLPEEDPSNPIFKP+PEP RLESFLI N+I+NYCNQINGV+GQSF+RLYL KALH++
Sbjct: 279 EEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 337

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391211|ref|NP_563880.1| translation initiation factor eIF-3 subunit 3 [Arabidopsis thaliana] gi|23396619|sp|Q9C5Z2.2|EIF3H_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit H; Short=eIF3h; AltName: Full=Eukaryotic translation initiation factor 3 subunit 3; AltName: Full=eIF-3-gamma; AltName: Full=eIF3 p38 subunit gi|4874264|gb|AAD31329.1|AC007354_2 Similar to gb|U54559 eIF3-p40 subunit from Homo sapiens and is a member of the PF|01398 Mov34 family. ESTs gb|N96623 and gb|N07519 come from this gene [Arabidopsis thaliana] gi|15451122|gb|AAK96832.1| Unknown protein [Arabidopsis thaliana] gi|20148435|gb|AAM10108.1| unknown protein [Arabidopsis thaliana] gi|21592938|gb|AAM64888.1| putative translation initiation factor [Arabidopsis thaliana] gi|23397245|gb|AAN31904.1| putative translation initiation factor [Arabidopsis thaliana] gi|332190533|gb|AEE28654.1| translation initiation factor eIF-3 subunit 3 [Arabidopsis thaliana]

 Score =  303 bits (776), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/179 (81%), Positives = 164/179 (91%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LYR  NFTGEKLREKN SW+DIFEEIP+KVSNSAL+SAFMTELE DTPV+Q DYDRL 
Sbjct: 159 MELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLH 218

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
            S++PFLE NMEFLI+CMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AG
Sbjct: 219 SSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAG 278

Query: 121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
           EEPLPEEDPSNPIFK IPEP RLESFLI N+++N+C QINGV GQ+FSRLYLTKALHDN
Sbjct: 279 EEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVAGQNFSRLYLTKALHDN 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2196469	337	TIF3H1 "AT1G10840" [Arabidopsi	1.0	0.531	0.810	3e-78
UNIPROTKB|B5RI54	344	eif3h "Eukaryotic translation	0.972	0.505	0.380	2e-31
UNIPROTKB|Q5PPY6	334	eif3h "Eukaryotic translation	0.983	0.526	0.370	2.6e-31
UNIPROTKB|B5FY35	348	EIF3H "Eukaryotic translation	0.983	0.505	0.370	3.3e-31
ZFIN|ZDB-GENE-040808-19	335	eif3ha "eukaryotic translation	0.988	0.528	0.374	3.3e-31
UNIPROTKB|Q6P381	335	eif3h "Eukaryotic translation	0.977	0.522	0.379	5.4e-31
UNIPROTKB|Q5ZLE6	348	EIF3H "Eukaryotic translation	0.977	0.502	0.374	6.9e-31
ZFIN|ZDB-GENE-051030-42	333	eif3hb "eukaryotic translation	0.972	0.522	0.369	6.9e-31
UNIPROTKB|B3KS98	366	EIF3S3 "Eukaryotic translation	0.977	0.478	0.374	2.3e-30
UNIPROTKB|O15372	352	EIF3H "Eukaryotic translation	0.977	0.497	0.374	2.3e-30

TAIR|locus:2196469 TIF3H1 "AT1G10840" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 145/179 (81%), Positives = 164/179 (91%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M+LYR  NFTGEKLREKN SW+DIFEEIP+KVSNSAL+SAFMTELE DTPV+Q DYDRL 
Sbjct:   159 MELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLH 218

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
              S++PFLE NMEFLI+CMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AG
Sbjct:   219 SSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAG 278

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
             EEPLPEEDPSNPIFK IPEP RLESFLI N+++N+C QINGV GQ+FSRLYLTKALHDN
Sbjct:   279 EEPLPEEDPSNPIFKAIPEPSRLESFLITNQVSNFCGQINGVAGQNFSRLYLTKALHDN 337

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

UNIPROTKB|B5RI54 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Salmo salar (taxid:8030)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 67/176 (38%), Positives = 113/176 (64%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++  + +  +FEE+P+ + NS LI+  M ELE    V  + ++ L 
Sbjct:   166 MEICKEKDFSAEGLKKAMIGFEHMFEEVPIVIKNSHLINVLMWELEEKCTVADK-HELLN 224

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+  + Q+R+ EN  R+  G
Sbjct:   225 LSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYSRNLSKQQQQKHQYTQRRQQENAQRQTRG 284

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 176
             E PLPEED S  +FKP   PPR+++ LIA +I NYC  +   T Q+  +L++ +AL
Sbjct:   285 ETPLPEEDVSK-MFKPPQPPPRMDTLLIAGQINNYCQNVKEFTSQNLGKLFMAEAL 339

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q5PPY6 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Xenopus laevis (taxid:8355)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 66/178 (37%), Positives = 116/178 (65%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+  + EL+   PVT++ ++ L 
Sbjct:   156 MEICKEKDFSAEGLKKANVAYEDMFEEVPIVIKNSHLINVLVWELDKKAPVTEK-HELLN 214

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +D++S +  K+  Y R++ +QQ Q+  + Q+++ EN  R + G
Sbjct:   215 LSSSNHLEKSLQLLMDRVDEMSQDIVKYNTYQRNVGKQQQQKHQYTQRKQQENLQRLSRG 274

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
             E PLPEED  N +FKP   P R++  LIA +I  Y   I G T Q+  +L++ +AL D
Sbjct:   275 ETPLPEEDV-NKMFKPPVTPSRMDPLLIAGQINTYIQHIKGFTSQNLGKLFMAEALQD 331

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|B5FY35 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Taeniopygia guttata (taxid:59729)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 66/178 (37%), Positives = 116/178 (65%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++ ++FEE+P+ + NS LI+  + ELE  + V  R ++ L 
Sbjct:   170 MEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLS 228

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             L+SS  L ++++ L++ +D++S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   229 LASSNHLGKSLQLLMDRVDEMSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENIQRQSRG 288

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
             E PLPEED  N +FKP   PPR+ES LIA +I  YC  I     Q+  +L++ +AL D
Sbjct:   289 EPPLPEED-INKLFKPPQPPPRMESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

ZFIN|ZDB-GENE-040808-19 eif3ha "eukaryotic translation initiation factor 3, subunit H, a" [Danio rerio (taxid:7955)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 67/179 (37%), Positives = 117/179 (65%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +FT E L++  +++  +FEE+P+ + NS LI+  M +L+  + +  + ++ L 
Sbjct:   157 MEICKEKDFTPEGLKKAAVAYEHMFEEVPIFIKNSHLINVLMWDLQEKSTLADK-HELLN 215

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+Q + Q+R+ EN  R++ G
Sbjct:   216 LSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYCRNLSKQQQQKQQYQQRRQQENAQRQSRG 275

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 179
             E PLPEED S  +FK    PPR+++ LIA +I NYC  I   T Q+  +L++ +AL  N
Sbjct:   276 EPPLPEEDISK-MFKAPQAPPRMDTLLIAGQINNYCQNIKEFTSQNLGKLFMAEALQSN 333

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0048882 "lateral line development" evidence=IMP

GO:0001944 "vasculature development" evidence=IMP

UNIPROTKB|Q6P381 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 68/179 (37%), Positives = 118/179 (65%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+    EL+   PVT++ ++ L 
Sbjct:   157 MEVCKEKDFSAEGLKKANIAFEDMFEEVPIIIKNSHLINVLAWELDKKAPVTEK-HELLN 215

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +D+LS +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   216 LSSSNHLEKSLQLLMDRVDELSQDIVKYNTYLRNISKQQQQKHQYTQRRQQENLQRQSRG 275

Query:   121 EEPLPEEDPSNPIFKPIPEPP-RLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
             E  LPEED  N +FKP P PP R++S LIA +I  Y   I   T Q+  +L++ +A+ D
Sbjct:   276 ETSLPEEDV-NKLFKP-PVPPSRMDSLLIAGQINTYIQHIKEFTSQNLGKLFMAEAMQD 332

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q5ZLE6 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Gallus gallus (taxid:9031)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 67/179 (37%), Positives = 118/179 (65%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++ ++FEE+P+ + NS LI+  + ELE  + V  R ++ L 
Sbjct:   170 MEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLS 228

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             L+SS  L ++++ L++ +D++S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   229 LASSNHLGKSLQLLMDRVDEMSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENLQRQSRG 288

Query:   121 EEPLPEEDPSNPIFKPIPEPP-RLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
             E PLPEED  N +FKP P+PP R+ES LIA +I  YC  I     Q+  +L++ +AL D
Sbjct:   289 EAPLPEED-INKLFKP-PQPPARMESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

ZFIN|ZDB-GENE-051030-42 eif3hb "eukaryotic translation initiation factor 3, subunit H, b" [Danio rerio (taxid:7955)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 65/176 (36%), Positives = 116/176 (65%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ ++ +  +FEE+P+ + NS LI+  + ELE  +    + ++ L 
Sbjct:   155 MEICKEKDFSSEGLKKASVGYEHMFEEVPIVIKNSHLINVLLWELEEKSTAADK-HELLS 213

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             LSSS  LE++++ L++ +DD+S +  K+  Y RSL++QQ Q+  ++Q+R+ EN  R++ G
Sbjct:   214 LSSSSHLEKSLQMLMDRVDDMSQDIVKYNNYSRSLSKQQQQKHQYVQRRQQENAQRQSRG 273

Query:   121 EEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 176
             E PLPEED +  +FKP   PPR+++ LIA++I  YC  I   T Q+  +L++ +AL
Sbjct:   274 EPPLPEEDLTK-MFKPPQPPPRMDTLLIASQINTYCQTIKEFTSQNLGKLFMAEAL 328

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

UNIPROTKB|B3KS98 EIF3S3 "Eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 67/179 (37%), Positives = 117/179 (65%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++ L 
Sbjct:   188 MEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLS 246

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             L+SS  L +N++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   247 LASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRG 306

Query:   121 EEPLPEEDPSNPIFKPIPEPP-RLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
             E PLPEED S  +FKP P+PP R++S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:   307 EPPLPEEDLSK-LFKP-PQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 363

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|O15372 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 67/179 (37%), Positives = 117/179 (65%)

Query:     1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
             M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++ L 
Sbjct:   174 MEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLS 232

Query:    61 LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
             L+SS  L +N++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ G
Sbjct:   233 LASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRG 292

Query:   121 EEPLPEEDPSNPIFKPIPEPP-RLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 178
             E PLPEED S  +FKP P+PP R++S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:   293 EPPLPEEDLSK-LFKP-PQPPARMDSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349

GO:0005515 "protein binding" evidence=IPI

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0006446 "regulation of translational initiation" evidence=TAS

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5Z2	EIF3H_ARATH	No assigned EC number	0.8100	1.0	0.5311	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
cd08065	266	cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN)	1e-58

>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

 Score =  183 bits (467), Expect = 1e-58
 Identities = 74/128 (57%), Positives = 99/128 (77%)

Query: 1   MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQ 60
           M+LY+   F+ E LRE NL++ +IFEEIPV + NS L++A ++ELE D+P +Q D+DRL 
Sbjct: 139 MELYKEGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLD 198

Query: 61  LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG 120
           LS++ FLE+N+E L+E +D+LS EQ KF +Y R+L RQQAQ Q WLQKR+ EN  R+A G
Sbjct: 199 LSTNSFLEKNLELLMESVDELSQEQGKFNYYQRNLARQQAQIQQWLQKRKAENAQREARG 258

Query: 121 EEPLPEED 128
           EEPLPEED
Sbjct: 259 EEPLPEED 266

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, differentiation, and apoptosis, and EIF3h in patients with non-small cell lung cancer (NSCLC) improves survival if treated with the Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitor (EGFR-TKI), Gefitinib. Plant eIF3h is implicated in translation of specific mRNAs. Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG1560	339	consensus Translation initiation factor 3, subunit	100.0
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	100.0
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	96.93
cd08064	265	MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi	83.48

>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.6e-61  Score=410.83  Aligned_cols=177  Identities=38%  Similarity=0.650  Sum_probs=170.5

Q ss_pred             CcccccCCCChHHHhhCCCCcccceeeecceeechHHHHHHHhhcC--CCCCCCcCcCcccCCCCChhHHHHHHHHHHHH
Q 030294            1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE--PDTPVTQRDYDRLQLSSSPFLERNMEFLIECM   78 (179)
Q Consensus         1 m~~yk~~~ft~e~l~~~~Lt~~~IfeEiPI~I~NS~Lv~~~L~eL~--~~~~~~~~~~~~L~l~~~~~Lek~l~~l~~~v   78 (179)
                      |++|++++||+|.|+++||||++||+||||+||||||+|++|++|+  .+.++..+.+..||||+...|+|+++.||++|
T Consensus       158 m~~~kekdwtpealk~~nltyenmfeElPIVIknS~L~nvlmseLs~~e~c~sdk~~~~~fdlgs~t~leknir~lme~v  237 (339)
T KOG1560|consen  158 MAAHKEKDWTPEALKSANLTYENMFEELPIVIKNSHLANVLMSELSEPEDCESDKPLHSNFDLGSGTRLEKNIRLLMERV  237 (339)
T ss_pred             HHHHhcCCCCHHHHHhcCCCHHHHHhhcCeeeeccHHHHHHHHhccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999997  44556565689999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 030294           79 DDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ  158 (179)
Q Consensus        79 D~l~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge~plPeed~~~~~fK~~~ePSRL~slL~s~Qi~~yc~~  158 (179)
                      |++++|++++++|||+++|||++++||++||++||+.|+++|+||||+|| |.|+||+|++|.|||++|+|+||+++|++
T Consensus       238 DEl~qe~~~l~kyqr~~~rqq~~~~q~~aKrqaENa~R~argep~lP~dd-~kr~fk~pq~p~rLdslLiS~qint~aq~  316 (339)
T KOG1560|consen  238 DELHQEIVNLNKYQRQLARQQAKKHQWIAKRQAENANRAARGEPPLPEDD-WKRIFKPPQEPRRLDSLLISGQINTSAQQ  316 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChHH-HHHHhcCCCchhHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988 99999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHhhhc
Q 030294          159 INGVTGQSFSRLYLTKALHD  178 (179)
Q Consensus       159 i~~~~~~~l~Klfl~~~l~~  178 (179)
                      |..||+++|+|||+++++|.
T Consensus       317 ike~tSqnl~Klfiaea~~~  336 (339)
T KOG1560|consen  317 IKEFTSQNLSKLFIAEALQE  336 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999985

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=100.00  E-value=9.6e-40  Score=279.43  Aligned_cols=128  Identities=58%  Similarity=0.975  Sum_probs=122.8

Q ss_pred             CcccccCCCChHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHHHHH
Q 030294            1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDD   80 (179)
Q Consensus         1 m~~yk~~~ft~e~l~~~~Lt~~~IfeEiPI~I~NS~Lv~~~L~eL~~~~~~~~~~~~~L~l~~~~~Lek~l~~l~~~vD~   80 (179)
                      |++|++|+|+.++++++++++.+||+||||+|+||+|+++||++|.+..+...++|++|+|+++++|+++|++|+++||+
T Consensus       139 ~~~~~~~~~~~~~l~~~~~~~~~if~eiPv~i~n~~l~~~~L~~l~~~~~~~~~~~~~l~l~~~~~le~~l~~l~~~id~  218 (266)
T cd08065         139 MELYKEGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLDLSTNSFLEKNLELLMESVDE  218 (266)
T ss_pred             HHHhhcCCcCHHHHHHhcCchhcEEEEEEEEEEchHHHHHHHHhcccCCCcccCCcccccccCchhHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999987766655699999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCC
Q 030294           81 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED  128 (179)
Q Consensus        81 l~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge~plPeed  128 (179)
                      |++|++||++|||+++|||++++||++|||+||++|+++|++|||+||
T Consensus       219 l~~e~~~~~~y~r~~~~~~~~~~~~~~kr~~en~~r~~~~~~~lp~~~  266 (266)
T cd08065         219 LSQEQGKFNYYQRNLARQQAQIQQWLQKRKAENAQREARGEEPLPEED  266 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999975

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=96.93  E-value=0.0011  Score=57.20  Aligned_cols=41  Identities=12%  Similarity=0.151  Sum_probs=38.4

Q ss_pred             CCCChHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCC
Q 030294            7 NNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPD   48 (179)
Q Consensus         7 ~~ft~e~l~~~~Lt~~~IfeEiPI~I~NS~Lv~~~L~eL~~~   48 (179)
                      |.|+.++++ ..+++.++|.||||.|+||+|.+++|..|...
T Consensus       162 ~~~~~~~~~-~~~~~~~~y~~l~i~~~~s~l~~~~L~~l~~~  202 (268)
T cd08069         162 GHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWNK  202 (268)
T ss_pred             CccCcHHHH-HhCchhcEEEEeeeEEecCHHHHHHHHHHHHH
Confidence            789999999 99999999999999999999999999998543

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Probab=83.48  E-value=3.4  Score=35.41  Aligned_cols=67  Identities=18%  Similarity=0.216  Sum_probs=41.9

Q ss_pred             CcccceeeecceeechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 030294           20 SWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSL   95 (179)
Q Consensus        20 t~~~IfeEiPI~I~NS~Lv~~~L~eL~~~~~~~~~~~~~L~l~~~~~Lek~l~~l~~~vD~l~~Eq~k~~~yqR~~   95 (179)
                      ++..+|+|||++|+|+.-=..-+.-+.........         ...+..+++.+..++-.|..-......|-+.+
T Consensus       138 ~~~~~F~~ip~~i~~~eaE~i~v~~l~~~~~~~~~---------~~~~~~~l~~~~~al~~L~~~l~~i~~Yl~~V  204 (265)
T cd08064         138 TLGSMFVPIPLELLYSEAERVALDLLAKTLASPSR---------SAPLTSDLEQLEASLEKLQEMLDRVLRYVEDV  204 (265)
T ss_pred             CcceEEEEcceeeecCcHHHHHHHHHHhhccCCcc---------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999998766666666433221110         11133566666666666655555555565553

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 49/188 (26%)

Query: 11  GEKLREKNLSWVDIFEEIPV-KVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPF--- 66
            E +R+   +W D ++ +   K++   +I + +  LEP     ++ +DRL +    F   
Sbjct: 334 AESIRDGLATW-DNWKHVNCDKLTT--IIESSLNVLEPAE--YRKMFDRLSV----FPPS 384

Query: 67  -------LER---------NMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRR 110
                  L            M  + +      VE+Q  +      +         L+ + 
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-----LKVKL 439

Query: 111 DENKA--RKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANY----CNQINGVTG 164
           +   A  R       +P+   S+ +      PP L+ +   + I  +          +T 
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLI-----PPYLDQY-FYSHIG-HHLKNIEHPERMT- 491

Query: 165 QSFSRLYL 172
             F  ++L
Sbjct: 492 -LFRMVFL 498

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	90.32

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.32  E-value=0.44  Score=40.66  Aligned_cols=126  Identities=10%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             CChHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHHHHHhHHHHHHH
Q 030294            9 FTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKF   88 (179)
Q Consensus         9 ft~e~l~~~~Lt~~~IfeEiPI~I~NS~Lv~~~L~eL~~~~~~~~~~~~~L~l~~~~~Lek~l~~l~~~vD~l~~Eq~k~   88 (179)
                      +....+...+..+...|.++||.++.|.|-..+|..|......     .  .|+..++ .++++...+++.++..   ..
T Consensus       180 ~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~-----~--~l~~~~~-~~~~~~~~~~i~~m~~---~~  248 (306)
T 4b4t_V          180 LNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQ-----S--GLKMYDY-EEKEESNLAATKSMVK---IA  248 (306)
T ss_dssp             ----------------CEEECSCCCCCSSCTHHHHHHHHC-----------------C-HHHHHHHHHHHHHHSS---CH
T ss_pred             cCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccc-----c--ccccCcH-HHHHHHHHHHHHHHHH---HH
Confidence            3444555566777889999999999999999999888543211     1  1233332 3445555555555533   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhHH
Q 030294           89 QFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTG  164 (179)
Q Consensus        89 ~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge~plPeed~~~~~fK~~~ePSRL~slL~s~Qi~~yc~~i~~~~~  164 (179)
                      ..|.+.+..++..-..++..        +.     .+.-|+. +     .-....+.|+.++-++.+|-.|+..+.
T Consensus       249 ~~y~k~v~~e~~~~~~~l~~--------~~-----vgk~dp~-~-----~l~~~~~~l~~~ni~~~l~~~~~~~~~  305 (306)
T 4b4t_V          249 EQYSKRIEEEKELTEEELKT--------RY-----VGRQDPK-K-----HLSETADETLENNIVSVLTAGVNSVAI  305 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--------TC-----SCSSCCS-S-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccccCCHHHHHh--------hc-----cCccChH-H-----HHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            34555555444332222210        00     1111210 0     012345889999999999999998764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00