Citrus Sinensis ID: 030305

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MVLAGVDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAANGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNGYNIRVANGCDSGDRPVYKSNPATNDWIPSVEYDQGFISSKPNRSEGC
Secondary Structure (PSIPRED)
cEEEccccEEEcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHcccccccccccccccccEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHccHcccccccccEEEEEEEcccccEEEEcccccccccccccccccccccccccccccEEccccccccccc
Coil and Loop (DISEMBL)
mvlagvdqwtvtkpsrsdeVLDAVEQVRIANRVRAqidsmapkrptkpnrsepdsiaptndqsaangnipeldklrslqsqsHVGVIYSAevnntaqdeFVETQYYKQLVSIdkdhhttgtGFIRVanegngynirvangcdsgdrpvyksnpatndwipsveydqgfisskpnrsegc
Flexible Loop (DISEMBL)
mvlagvdqwtvtkpsrsdevldaVEQVRIANrvraqidsmapkrptkpnrsepdsiaptndqsaanGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIrvanegngyNIRVANGCDSGDRPVYKSnpatndwipsveydqgfisskpnrsegc
Low Complexity Region (SEG)
MVLAGVDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAANGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNGYNIRVANGCDSGDRPVYKSNPATNDWIPSVEYDQGFISSKPNRSEGC
Disordered region (IsUnstruct)
**********************************************************************************HVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNGYNIRVANGCDSGDRPVYK***ATNDWIPSVEYD**************
Disordered Region (DISOPRED)
********W*********************NRVRAQIDSMA**************************NIPELDKLRSLQS*************NTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNGY*I***************SNPATNDWIPSVEYD**************
Disordered Region (DISEMBL)
MVLAGVDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSM********************DQSAANGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNGYNIRVANGCDSGDRPVYKSNPATNDWIPSVEYDQGFIS*********
Disordered Region (DISPRO)
MVLAGVDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPK***********************GNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNGYNIRVANG********YKSNP*T*DWIPSVEYD**FI**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLAGVDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAANGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNGYNIRVANGCDSGDRPVYKSNPATNDWIPSVEYDQGFISSKPNRSEGC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
255567917	174	conserved hypothetical protein [Ricinus	0.938	0.965	0.622	1e-49
224115044	180	predicted protein [Populus trichocarpa]	0.960	0.955	0.596	2e-48
358249334	179	uncharacterized protein LOC100806219 [Gl	0.955	0.955	0.588	3e-48
388509170	179	unknown [Lotus japonicus]	0.944	0.944	0.581	9e-46
225438857	180	PREDICTED: uncharacterized protein LOC10	0.944	0.938	0.554	1e-44
356540658	174	PREDICTED: uncharacterized protein LOC10	0.893	0.919	0.578	5e-42
388497604	177	unknown [Medicago truncatula]	0.938	0.949	0.508	4e-40
357482749	177	hypothetical protein MTR_5g016450 [Medic	0.938	0.949	0.502	5e-40
147798320	197	hypothetical protein VITISV_027322 [Viti	0.871	0.791	0.535	4e-38
15235514	173	protein maternal effect embryo arrest 59	0.938	0.971	0.5	2e-37

>gi|255567917|ref|XP_002524936.1| conserved hypothetical protein [Ricinus communis] gi|223535771|gb|EEF37433.1| conserved hypothetical protein [Ricinus communis]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 129/175 (73%), Gaps = 7/175 (4%)

Query: 6   VDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAA 65
           V QWTVTKPSRSDEVLDA +Q+ +AN++RAQ DS+APKRP KP+RSE D+ A      A 
Sbjct: 2   VGQWTVTKPSRSDEVLDANQQLEVANQIRAQFDSIAPKRPVKPSRSESDAAAAPC--VAE 59

Query: 66  NGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIR 125
             +IPELDKL+SLQSQ    ++ SAE  N  QDEFVETQYYK+L SIDK HHTTG+GFI+
Sbjct: 60  QNSIPELDKLQSLQSQP--TILISAEGANIEQDEFVETQYYKELDSIDKQHHTTGSGFIK 117

Query: 126 VANEG--NGYNIRVANGCDSGDR-PVYKSNPATNDWIPSVEYDQGFISSKPNRSE 177
           V  E   NGYNI+   G  +G      +SNPATNDWIP+ E DQ F+SSKPNRSE
Sbjct: 118 VTKEENINGYNIQFPRGHGAGTLVSGCRSNPATNDWIPNSEDDQAFVSSKPNRSE 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115044|ref|XP_002332223.1| predicted protein [Populus trichocarpa] gi|222831836|gb|EEE70313.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/181 (59%), Positives = 130/181 (71%), Gaps = 9/181 (4%)

Query: 6   VDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSA- 64
           V QWT+TKPSRSDEVLDA +Q++I N++RAQ DSM PKRP+KP+RSE D+        + 
Sbjct: 2   VGQWTMTKPSRSDEVLDANQQLQITNQIRAQFDSMVPKRPSKPSRSESDTTTTPTSSLSE 61

Query: 65  -ANGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGF 123
               NIPELDKLRSLQSQS   V++SAE  N  QDEFVETQYY +L SIDK HHTTG+GF
Sbjct: 62  IEQDNIPELDKLRSLQSQS--PVLFSAEGANMVQDEFVETQYYTELDSIDKQHHTTGSGF 119

Query: 124 IRVA----NEGNGYNIRVANGCDSGDR-PVYKSNPATNDWIPSVEYDQGFISSKPNRSEG 178
           I V     +E NGY I++++    G     ++SNPATNDW PS E DQ F+SSKPNRSE 
Sbjct: 120 INVVRGEEHEKNGYGIQLSSAAAGGKLFSCFRSNPATNDWTPSPEDDQVFVSSKPNRSES 179

Query: 179 C 179
           C
Sbjct: 180 C 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249334|ref|NP_001240035.1| uncharacterized protein LOC100806219 [Glycine max] gi|255633216|gb|ACU16964.1| unknown [Glycine max] gi|255645106|gb|ACU23052.1| unknown [Glycine max]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 128/180 (71%), Gaps = 9/180 (5%)

Query: 6   VDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAA 65
           V Q T TKPSRSDEVLDA EQ+RIAN +RAQ D++ PKRP KPNRSEPD++      +A+
Sbjct: 3   VGQLTATKPSRSDEVLDAEEQLRIANEIRAQFDALEPKRPIKPNRSEPDAVLQYPVAAAS 62

Query: 66  NGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIR 125
             NIPEL K +SLQS SH  +I SA   + AQDEFVETQYYK+L SIDK HHTTG+GFI+
Sbjct: 63  VNNIPELHKFQSLQSPSH-AIISSAGFVD-AQDEFVETQYYKELASIDKQHHTTGSGFIK 120

Query: 126 VANEG--NGYNIRV----ANGCDSGDRPVYKSNPATNDWIPSVEYDQGFISSKPNRSEGC 179
            A EG    Y I++     N  ++  R  YKSNPATNDW+P+ +  Q F+SSKPNRSE  
Sbjct: 121 AAREGGEGEYEIQLPNNHVNAAETQPR-SYKSNPATNDWVPNSDEHQVFVSSKPNRSEST 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509170|gb|AFK42651.1| unknown [Lotus japonicus]

 Score =  188 bits (477), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 104/179 (58%), Positives = 125/179 (69%), Gaps = 10/179 (5%)

Query: 6   VDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIA--PTNDQS 63
           V   T TKPSRSDEVLD+ EQ+RIAN++RAQ D+ +PKRP KPNRSEPD  A  P +  +
Sbjct: 2   VGHTTATKPSRSDEVLDSEEQLRIANQIRAQFDAFSPKRPIKPNRSEPDPFAQNPVDSST 61

Query: 64  AANGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGF 123
            ++ +IPEL K +SLQSQS    I S E    AQDEFVETQYYK+L SIDK HHTTG+GF
Sbjct: 62  LSDQDIPELHKFQSLQSQSE--AILSTEGIIDAQDEFVETQYYKELTSIDKTHHTTGSGF 119

Query: 124 IRVANEG--NGYNIRVANGCDSGDRPV--YKSNPATNDWIPSVEYDQ-GFISSKPNRSE 177
           I+   EG   GY I   NG  +G+     YK NPATNDW+P+ + D   F+SSKPNRSE
Sbjct: 120 IKAVTEGGEGGYEI-ANNGVAAGETRFRGYKGNPATNDWVPNCDDDNLDFVSSKPNRSE 177

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438857|ref|XP_002283362.1| PREDICTED: uncharacterized protein LOC100264533 isoform 1 [Vitis vinifera] gi|296087385|emb|CBI33759.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 126/184 (68%), Gaps = 15/184 (8%)

Query: 6   VDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQS-A 64
           V QWTVTKP RSDEVL+A +Q RI  ++RA  DS+ PKRP KP RSE DS  P +  S A
Sbjct: 2   VGQWTVTKPGRSDEVLEADQQQRITAQIRAHFDSITPKRPAKPGRSESDS--PLSSPSHA 59

Query: 65  ANGNIPELDKLRSLQSQSH--VGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTG 122
           ANG IPEL K R+LQSQS      + S + +   Q+EFVET YYK+L SIDK HHTTGTG
Sbjct: 60  ANGTIPELHKFRTLQSQSQSESHAMISTDGSGMLQEEFVETHYYKELGSIDKQHHTTGTG 119

Query: 123 FIRVANEG--NGYNIRVANGCDSGDRPV----YKSNPATNDWIPSVEYDQ-GFISSKPNR 175
           FI+V   G  +GY  ++       +R +    +KSNPATNDWIPS+E D+ G++SSKP+R
Sbjct: 120 FIKVERRGVEDGYGFQLQR---RENREMMLRGFKSNPATNDWIPSLEEDEVGYVSSKPSR 176

Query: 176 SEGC 179
           SE C
Sbjct: 177 SESC 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540658|ref|XP_003538803.1| PREDICTED: uncharacterized protein LOC100805584 [Glycine max]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/173 (57%), Positives = 122/173 (70%), Gaps = 13/173 (7%)

Query: 6   VDQWTVTKPSR-SDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSA 64
           V+Q  V KPSR SDEV     QVRIAN +RA+ D++ PKRP KPNRSEPD++      ++
Sbjct: 3   VEQLAVAKPSRPSDEV-----QVRIANEIRAEFDALEPKRPIKPNRSEPDAVLQHPPDAS 57

Query: 65  ANGNIPELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFI 124
            N NIPEL K RSLQS+SH  +I SA + + A DEFVETQYYK+L +IDK HHTTG+GFI
Sbjct: 58  VN-NIPELHKFRSLQSRSH-AIISSAGIVD-AHDEFVETQYYKELAAIDKQHHTTGSGFI 114

Query: 125 RVANEG--NGYNIRVANGCDSGDRPVYKSNPATNDWIPSVEYDQGFISSKPNR 175
           +   EG   GY I V N  ++  R  YKSNPATNDW+P+ E  Q F+SSKPNR
Sbjct: 115 KAVREGGEGGYEIHV-NAAETQPRG-YKSNPATNDWVPNSEEYQVFVSSKPNR 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497604|gb|AFK36868.1| unknown [Medicago truncatula]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/173 (50%), Positives = 119/173 (68%), Gaps = 5/173 (2%)

Query: 10  TVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAANGNI 69
           T TKPSRSDEVL+  EQ++I N+V+AQ D++ PKRP KPNRSEP++     D +  + NI
Sbjct: 7   TTTKPSRSDEVLNTEEQIKITNQVKAQFDALTPKRPIKPNRSEPETQQNLVDSTFPSHNI 66

Query: 70  PELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANE 129
            EL+KL+SLQS S    I S++     QDEFVET+YY++L+SIDK HHTTG+GFI+   +
Sbjct: 67  QELEKLQSLQSNSQ--TILSSKGLVDTQDEFVETKYYQELLSIDKQHHTTGSGFIKAVKD 124

Query: 130 GN--GYNIRVANGCDSGDRPVYKSNPATNDWIPSVEYDQ-GFISSKPNRSEGC 179
           G+   Y I++           YKSNPATNDW+P++ +    ++SSKPNRSE  
Sbjct: 125 GDEGEYGIQLPASHGETQFRGYKSNPATNDWVPNLNHQHMDYVSSKPNRSEST 177

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482749|ref|XP_003611661.1| hypothetical protein MTR_5g016450 [Medicago truncatula] gi|355512996|gb|AES94619.1| hypothetical protein MTR_5g016450 [Medicago truncatula]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 87/173 (50%), Positives = 119/173 (68%), Gaps = 5/173 (2%)

Query: 10  TVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAANGNI 69
           T TKPSRSDEVL+  EQ++I N+++AQ D++ PKRP KPNRSEP++     D +  + NI
Sbjct: 7   TTTKPSRSDEVLNTEEQIKITNQIKAQFDALTPKRPIKPNRSEPETQQNLVDSTFPSHNI 66

Query: 70  PELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANE 129
            EL+KL+SLQS S    I S++     QDEFVET+YY++L+SIDK HHTTG+GFI+   +
Sbjct: 67  QELEKLQSLQSNSQ--TILSSKGLVDTQDEFVETKYYQELLSIDKQHHTTGSGFIKAVKD 124

Query: 130 GN--GYNIRVANGCDSGDRPVYKSNPATNDWIPSVEYDQ-GFISSKPNRSEGC 179
           G+   Y I++           YKSNPATNDW+P++ +    ++SSKPNRSE  
Sbjct: 125 GDEGEYGIQLPASHGETQFRGYKSNPATNDWVPNLNHQHMDYVSSKPNRSEST 177

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798320|emb|CAN63462.1| hypothetical protein VITISV_027322 [Vitis vinifera]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 114/170 (67%), Gaps = 14/170 (8%)

Query: 6   VDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQS-A 64
           V QWTVTKP RSDEVL+A +Q RI  ++RA  DS+ PKR  KP+RSE DS  P +  S A
Sbjct: 2   VGQWTVTKPGRSDEVLEADQQQRITAQIRAHFDSITPKRXAKPSRSESDS--PLSSPSHA 59

Query: 65  ANGNIPELDKLRSLQSQSH--VGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTG 122
           ANG IPEL K R+LQSQS      + S + +   Q+EFVET YYK+L SIDK HH TGTG
Sbjct: 60  ANGTIPELHKFRTLQSQSQSESHAMISTDGSGMLQEEFVETHYYKELGSIDKQHHXTGTG 119

Query: 123 FIRVANEG--NGYNIRVANGCDSGDRPV----YKSNPATNDWIPSVEYDQ 166
           FI+V   G  +GY +++       +R +    +KSNPATNDWIPS+E D+
Sbjct: 120 FIKVERRGVEDGYGLQLQR---RENREMMLRGFKSNPATNDWIPSLEEDE 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235514|ref|NP_195447.1| protein maternal effect embryo arrest 59 [Arabidopsis thaliana] gi|13877859|gb|AAK44007.1|AF370192_1 unknown protein [Arabidopsis thaliana] gi|2464852|emb|CAB16754.1| putative protein [Arabidopsis thaliana] gi|7270713|emb|CAB80396.1| putative protein [Arabidopsis thaliana] gi|14517512|gb|AAK62646.1| AT4g37300/C7A10_60 [Arabidopsis thaliana] gi|15809770|gb|AAL06813.1| AT4g37300/C7A10_60 [Arabidopsis thaliana] gi|17065602|gb|AAL33781.1| unknown protein [Arabidopsis thaliana] gi|332661379|gb|AEE86779.1| protein maternal effect embryo arrest 59 [Arabidopsis thaliana]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/174 (50%), Positives = 113/174 (64%), Gaps = 6/174 (3%)

Query: 10  TVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAANGNI 69
           +  KPSRSDE+ D  +Q++ AN++RA  DS+APKRPTKP RSEP     +   S    + 
Sbjct: 2   STMKPSRSDEISDPEQQIKNANQIRADFDSLAPKRPTKPTRSEP-GFPGSFSASDKITDH 60

Query: 70  PELDKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANE 129
           PE DK +SLQSQ+H  V+   + ++  QDEF+ET+YY  L +IDK HHTTG+GFI V  E
Sbjct: 61  PEADKFQSLQSQTHGKVLGEGD-SSAVQDEFLETEYYSNLTAIDKQHHTTGSGFINVVKE 119

Query: 130 GNGYN---IRVANGCDSGDRPVYKSNPATNDWIPSVEYD-QGFISSKPNRSEGC 179
            NG     +  A   D G++ VY+SNPATN+WIP+ E D     SSKPNRSE  
Sbjct: 120 DNGEESEAVTAAAIGDGGEKAVYRSNPATNEWIPATEEDFDSESSSKPNRSESS 173

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2115189	173	MEE59 "AT4G37300" [Arabidopsis	0.910	0.942	0.502	4.8e-39

TAIR|locus:2115189 MEE59 "AT4G37300" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 85/169 (50%), Positives = 109/169 (64%)

Query:    13 KPSRSDEVLDAVEQVRIANRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAANGNIPEL 72
             KPSRSDE+ D  +Q++ AN++RA  DS+APKRPTKP RSEP      +       + PE 
Sbjct:     5 KPSRSDEISDPEQQIKNANQIRADFDSLAPKRPTKPTRSEPGFPGSFSASDKITDH-PEA 63

Query:    73 DKLRSLQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNG 132
             DK +SLQSQ+H  V+   + ++  QDEF+ET+YY  L +IDK HHTTG+GFI V  E NG
Sbjct:    64 DKFQSLQSQTHGKVLGEGD-SSAVQDEFLETEYYSNLTAIDKQHHTTGSGFINVVKEDNG 122

Query:   133 YNIRVANGC---DSGDRPVYKSNPATNDWIPSVEYD-QGFISSKPNRSE 177
                         D G++ VY+SNPATN+WIP+ E D     SSKPNRSE
Sbjct:   123 EESEAVTAAAIGDGGEKAVYRSNPATNEWIPATEEDFDSESSSKPNRSE 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.128   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       179   0.00089  109 3  11 23  0.37    33
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  157 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.43u 0.22s 17.65t   Elapsed:  00:00:01
  Total cpu time:  17.43u 0.22s 17.65t   Elapsed:  00:00:01
  Start:  Fri May 10 19:12:22 2013   End:  Fri May 10 19:12:23 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00