Citrus Sinensis ID: 030344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MALNFIAPSPFVIPKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDLLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccEEEEccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEccccccEEEEEcccccHHHHcccHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccEEEccccccccccHcHcEHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
malnfiapspfvipkhkhLFKLQSQTTscktfaqsqrigaeggggvteedppaaslsgssssaQTQLDLLEQLTStssslegyesdgssrkltIRDQLAQLvgdrddefsiplgknlKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIgafvilppFIILGIAVLTGYVQLFP
Flexible Loop (DISEMBL)
malnfiapspfviPKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDLLEQLTStssslegyesdgssrkltiRDQLAQlvgdrddefsiplgknlkkvseKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP
Low Complexity Region (SEG)
MALNFIAPSPFVIPKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPPaaslsgssssaqtqldlleqltstsssleGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP
Disordered region (IsUnstruct)
****FIAPSPFVIPKHKHLFKL**************************************************************************************FSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLF*
Disordered Region (DISOPRED)
*******PSPFVIPKHKHLFKLQSQTTS***************************************DLLE**********************************D**FSIPLGKNLKKVSEK*LTI**************VSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP
Disordered Region (DISEMBL)
MALNFIAPSPFVIPKHKHLFKLQSQTTSCKTFAQSQRIG**************************QLDLLEQLTS**************RKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP
Disordered Region (DISPRO)
*ALNFIAPSPFVIPKHKHLFKLQSQTTSCKTFAQ**************************************LT****************KLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALNFIAPSPFVIPKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDLLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
255562170	192	conserved hypothetical protein [Ricinus	0.955	0.890	0.67	3e-57
356501461	191	PREDICTED: uncharacterized protein LOC10	0.910	0.853	0.710	8e-57
356553792	178	PREDICTED: uncharacterized protein LOC10	0.899	0.904	0.711	5e-56
225446815	190	PREDICTED: uncharacterized protein LOC10	0.921	0.868	0.771	6e-55
388509082	178	unknown [Medicago truncatula] gi|3885155	0.927	0.932	0.666	2e-52
357494233	173	hypothetical protein MTR_5g091190 [Medic	0.927	0.959	0.666	2e-52
449525854	190	PREDICTED: uncharacterized LOC101216249	0.871	0.821	0.720	7e-51
449453780	189	PREDICTED: uncharacterized protein LOC10	0.871	0.825	0.720	7e-51
224066559	186	predicted protein [Populus trichocarpa]	0.966	0.930	0.687	3e-49
297824263	187	hypothetical protein ARALYDRAFT_321975 [	0.983	0.941	0.6	5e-48

>gi|255562170|ref|XP_002522093.1| conserved hypothetical protein [Ricinus communis] gi|223538692|gb|EEF40293.1| conserved hypothetical protein [Ricinus communis]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 148/200 (74%), Gaps = 29/200 (14%)

Query: 1   MALNFIAPSP---------------FVIPKHKHLFKLQSQTTSC-KTFAQSQRIGAEGGG 44
           MALN    SP               F+IPKHKHLFK     +SC K FA+S+  GAE G 
Sbjct: 1   MALNISPASPCQISSCSSSSANNSHFLIPKHKHLFKFY--YSSCRKIFAKSE--GAESG- 55

Query: 45  GVTEEDPPAASLSGSSSSAQTQLDLLEQLTSTSSS---LEGYESDGSSRKLTIRDQLAQL 101
            + E+D P    SGS SS +TQLDLL+QLTS SSS     GYESDGSS KLTIR QLA+L
Sbjct: 56  -IKEQDLPP--FSGSLSSTRTQLDLLDQLTSNSSSSPDTVGYESDGSSYKLTIRQQLAKL 112

Query: 102 VGDRDD--EFSIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVI 159
           VG+RD+  EFSIPLGKNLKK S KFLTISQKRNIRRQAYL+EVSQRNDSVFFATIGAFVI
Sbjct: 113 VGERDEDEEFSIPLGKNLKKFSPKFLTISQKRNIRRQAYLDEVSQRNDSVFFATIGAFVI 172

Query: 160 LPPFIILGIAVLTGYVQLFP 179
           LPP +ILGIA+LTGYVQLFP
Sbjct: 173 LPPIVILGIAILTGYVQLFP 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501461|ref|XP_003519543.1| PREDICTED: uncharacterized protein LOC100776849 [Glycine max]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 120/169 (71%), Positives = 135/169 (79%), Gaps = 6/169 (3%)

Query: 11  FVIPKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDLL 70
           F+  KH +L K     +S  T   +Q  G + G  VT++D  +A   GS SS++ QLDLL
Sbjct: 29  FLTHKHNNLIKFYHPFSSLLTTC-AQTHGTDTG--VTQKDDASA---GSLSSSRAQLDLL 82

Query: 71  EQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQK 130
           EQLTSTSS   GYESDGSSRKLTIR+QL QL G+RDD+F+IPLGKNLKKVS KFLTISQK
Sbjct: 83  EQLTSTSSPNSGYESDGSSRKLTIREQLVQLFGERDDDFTIPLGKNLKKVSAKFLTISQK 142

Query: 131 RNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP 179
           RNIRRQ YLNEVSQRNDSVFFATIGAFVILPPFIILGIA+LTGYVQLFP
Sbjct: 143 RNIRRQTYLNEVSQRNDSVFFATIGAFVILPPFIILGIAILTGYVQLFP 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553792|ref|XP_003545236.1| PREDICTED: uncharacterized protein LOC100778027 [Glycine max]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 121/170 (71%), Positives = 136/170 (80%), Gaps = 9/170 (5%)

Query: 11  FVIPKHKHLFKLQSQTTSC-KTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDL 69
           F+  KH +L K+   ++S   T AQ+Q        GVT+ED  A +  GS SS++ QLDL
Sbjct: 17  FLTHKHNNLIKIYHPSSSLLTTCAQTQGTDT----GVTQEDASAGN--GSLSSSRAQLDL 70

Query: 70  LEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQ 129
           LEQLTSTSS   GYESDGS  KLTIR+QL QL G+RDD+F+IPLGKNLKKVS KFLTISQ
Sbjct: 71  LEQLTSTSSPNSGYESDGS--KLTIREQLEQLFGERDDDFTIPLGKNLKKVSAKFLTISQ 128

Query: 130 KRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP 179
           KRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIA+LTGYVQLFP
Sbjct: 129 KRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAILTGYVQLFP 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446815|ref|XP_002283386.1| PREDICTED: uncharacterized protein LOC100243650 isoform 1 [Vitis vinifera] gi|359485353|ref|XP_003633263.1| PREDICTED: uncharacterized protein LOC100243650 isoform 2 [Vitis vinifera] gi|302143535|emb|CBI22096.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/171 (77%), Positives = 147/171 (85%), Gaps = 6/171 (3%)

Query: 11  FVIPKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPP-AASLSGSSSSAQTQLDL 69
           F+IPKH+ LFKL S ++  +T AQS   G   G GVT+EDPP  A+LS S SSA++QLDL
Sbjct: 24  FLIPKHR-LFKLCSSSSCFRTSAQS---GGTEGRGVTQEDPPLPAALSESPSSARSQLDL 79

Query: 70  LEQLTSTSSSLEG-YESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTIS 128
           LEQLTST+ SLEG YESDG SR LTIRDQLAQLVG+RDD+F IPLGKNLKKVS KFLTIS
Sbjct: 80  LEQLTSTTPSLEGGYESDGMSRNLTIRDQLAQLVGERDDDFIIPLGKNLKKVSPKFLTIS 139

Query: 129 QKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP 179
           QKRNI+RQAYLNEVSQRNDSVFFATIGAFVILPP IILGIA++TGYVQLFP
Sbjct: 140 QKRNIKRQAYLNEVSQRNDSVFFATIGAFVILPPIIILGIAIITGYVQLFP 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509082|gb|AFK42607.1| unknown [Medicago truncatula] gi|388515509|gb|AFK45816.1| unknown [Medicago truncatula]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/174 (66%), Positives = 138/174 (79%), Gaps = 8/174 (4%)

Query: 6   IAPSPFVIPKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQT 65
           + PSP  + +  +  K    ++  KT AQSQ  G E G  V+E+    AS  GS SS++ 
Sbjct: 13  LHPSPSFLTRKYNNIKFHHASSLTKTCAQSQ--GTEPG--VSED----ASSIGSLSSSRA 64

Query: 66  QLDLLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFL 125
           QLDLLEQ TSTSSS+ GYESDGSS++LTIR+QLAQLVG+RDD+FS+PLGKNLKKVS KFL
Sbjct: 65  QLDLLEQFTSTSSSVIGYESDGSSQRLTIREQLAQLVGERDDDFSLPLGKNLKKVSAKFL 124

Query: 126 TISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP 179
           T SQ+RNI+RQ+YLNEVSQRNDS FFATIGAFV+LPP IILGIA+LTGYVQL P
Sbjct: 125 TTSQRRNIKRQSYLNEVSQRNDSTFFATIGAFVLLPPLIILGIAILTGYVQLLP 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494233|ref|XP_003617405.1| hypothetical protein MTR_5g091190 [Medicago truncatula] gi|355518740|gb|AET00364.1| hypothetical protein MTR_5g091190 [Medicago truncatula]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/174 (66%), Positives = 138/174 (79%), Gaps = 8/174 (4%)

Query: 6   IAPSPFVIPKHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQT 65
           + PSP  + +  +  K    ++  KT AQSQ  G E G  V+E+    AS  GS SS++ 
Sbjct: 8   LHPSPSFLTRKYNNIKFHHASSLTKTCAQSQ--GTEPG--VSED----ASSIGSLSSSRA 59

Query: 66  QLDLLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFL 125
           QLDLLEQ TSTSSS+ GYESDGSS++LTIR+QLAQLVG+RDD+FS+PLGKNLKKVS KFL
Sbjct: 60  QLDLLEQFTSTSSSVIGYESDGSSQRLTIREQLAQLVGERDDDFSLPLGKNLKKVSAKFL 119

Query: 126 TISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP 179
           T SQ+RNI+RQ+YLNEVSQRNDS FFATIGAFV+LPP IILGIA+LTGYVQL P
Sbjct: 120 TTSQRRNIKRQSYLNEVSQRNDSTFFATIGAFVLLPPLIILGIAILTGYVQLLP 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525854|ref|XP_004169931.1| PREDICTED: uncharacterized LOC101216249 [Cucumis sativus]

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 116/161 (72%), Positives = 134/161 (83%), Gaps = 5/161 (3%)

Query: 20  FKLQSQ-TTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDLLEQLTSTSS 78
           FK  S+ ++S + FA S+   AEG   V EE+   +S SGSSSSA+TQLDLLEQL+S S 
Sbjct: 34  FKFHSRCSSSSRKFAVSE--SAEGR--VNEEEFLISSSSGSSSSARTQLDLLEQLSSGSQ 89

Query: 79  SLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAY 138
            ++GYESDGS  K TIRDQLAQL  DRDD+F++PLGKNLKKVS KFLTISQKRNI+RQAY
Sbjct: 90  LVDGYESDGSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSAKFLTISQKRNIKRQAY 149

Query: 139 LNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP 179
           LNEVSQRNDSVFFAT+GAFVILPP +ILGIA+LTGYVQLFP
Sbjct: 150 LNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453780|ref|XP_004144634.1| PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus]

 Score =  205 bits (521), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 116/161 (72%), Positives = 134/161 (83%), Gaps = 5/161 (3%)

Query: 20  FKLQSQ-TTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDLLEQLTSTSS 78
           FK  S+ ++S + FA S+   AEG   V EE+   +S SGSSSSA+TQLDLLEQL+S S 
Sbjct: 33  FKFHSRCSSSSRKFAVSE--SAEGR--VNEEEFLISSSSGSSSSARTQLDLLEQLSSGSQ 88

Query: 79  SLEGYESDGSSRKLTIRDQLAQLVGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQAY 138
            ++GYESDGS  K TIRDQLAQL  DRDD+F++PLGKNLKKVS KFLTISQKRNI+RQAY
Sbjct: 89  LVDGYESDGSYGKTTIRDQLAQLFRDRDDDFTVPLGKNLKKVSAKFLTISQKRNIKRQAY 148

Query: 139 LNEVSQRNDSVFFATIGAFVILPPFIILGIAVLTGYVQLFP 179
           LNEVSQRNDSVFFAT+GAFVILPP +ILGIA+LTGYVQLFP
Sbjct: 149 LNEVSQRNDSVFFATVGAFVILPPIVILGIAILTGYVQLFP 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066559|ref|XP_002302136.1| predicted protein [Populus trichocarpa] gi|222843862|gb|EEE81409.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 149/192 (77%), Gaps = 19/192 (9%)

Query: 1   MALNFIAPSP-----------FVIPKHKHLFKLQSQTTSC-KTFAQSQRIGAEGGGGVTE 48
           MALNF A S            F+IP HKHL KL   + SC KT AQS+  GA    GVTE
Sbjct: 1   MALNFSASSLSHVSSSTTGPQFLIPAHKHLLKLYPSSFSCTKTSAQSE--GA--ASGVTE 56

Query: 49  EDPPAASLSGSSSSAQTQLDLLEQLTSTSSSLEGYESDGSSRKLTIRDQLAQLVGDRDDE 108
           +DP + S S SS+  +TQLDLLEQLTS + S +GYESDG S KLTIR+QLAQLVG+ D++
Sbjct: 57  QDPSSFSGSLSST--RTQLDLLEQLTSATPSADGYESDGGSGKLTIREQLAQLVGEGDND 114

Query: 109 FSIPLGK-NLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILG 167
           FSIPLGK NLKKVS KFLT+SQKRNIRRQAYLN+VSQRNDSVFFATIGAF+ILPP IILG
Sbjct: 115 FSIPLGKKNLKKVSAKFLTVSQKRNIRRQAYLNQVSQRNDSVFFATIGAFIILPPIIILG 174

Query: 168 IAVLTGYVQLFP 179
           IA+LTGYVQLFP
Sbjct: 175 IAILTGYVQLFP 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824263|ref|XP_002880014.1| hypothetical protein ARALYDRAFT_321975 [Arabidopsis lyrata subsp. lyrata] gi|297325853|gb|EFH56273.1| hypothetical protein ARALYDRAFT_321975 [Arabidopsis lyrata subsp. lyrata]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 132/190 (69%), Gaps = 14/190 (7%)

Query: 1   MALNFIAPSPFVIP----------KHKHLFKLQSQTTSCKTFAQSQRIGAEGGGGVTEED 50
           MALNF + S   I           +H HL    S   + +  ++   IG       +   
Sbjct: 1   MALNFFSTSLHPISNPSSSSRSKQRHHHLLLQLSSPPATRVRSERSEIGVTDNNDSSSSS 60

Query: 51  PPAASLSGSSSSAQTQLDLLEQLTSTSSSLEGYESD-GSSRKLTIRDQLAQLVGDRDDEF 109
              +  S SSSS +TQLDLLEQLTSTS   +GY SD G SR +TIR+QLA LVGDRDD+F
Sbjct: 61  SSFSGSSSSSSSVRTQLDLLEQLTSTS---DGYLSDAGGSRGITIRNQLAGLVGDRDDDF 117

Query: 110 SIPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIA 169
           +IPLGKNLKKVS KFLTISQKRNI+RQ+YLNEVSQRNDSVFFATIGAFVILPP +IL IA
Sbjct: 118 TIPLGKNLKKVSPKFLTISQKRNIKRQSYLNEVSQRNDSVFFATIGAFVILPPLVILAIA 177

Query: 170 VLTGYVQLFP 179
           +LTGYVQLFP
Sbjct: 178 ILTGYVQLFP 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:504956003	187	AT2G42975 "AT2G42975" [Arabido	0.988	0.946	0.534	6.8e-40

TAIR|locus:504956003 AT2G42975 "AT2G42975" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 101/189 (53%), Positives = 112/189 (59%)

Query:     1 MALNFIAPS--PFVIP------KHKHLFKLQ-SQTTSCKTFAQSQRIGAEGGGGVTEEDP 51
             MALNF + S  P   P      K  H   LQ S   + +  ++   IG          + 
Sbjct:     1 MALNFFSTSLHPISNPSSSSRSKQSHHLLLQLSSPPATRVRSERSEIGVTDDNN--NNND 58

Query:    52 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYESDGS-SRKLTIRDQLAQLVGDRDDEFS 110
                                           GY SDG  SR LTIRDQLA LVGDRDD+FS
Sbjct:    59 TSSSSFSGSSSSSSVRTQLDLLEQLTSTSDGYLSDGGGSRGLTIRDQLAGLVGDRDDDFS 118

Query:   111 IPLGKNLKKVSEKFLTISQKRNIRRQAYLNEVSQRNDSVFFATIGAFVILPPFIILGIAV 170
             IPLGKNLKKVS KFLTISQKRNI+RQ+YLNEVSQRNDSVFFATIGAFVILPP +IL IA+
Sbjct:   119 IPLGKNLKKVSPKFLTISQKRNIKRQSYLNEVSQRNDSVFFATIGAFVILPPLVILAIAI 178

Query:   171 LTGYVQLFP 179
             LTGYVQLFP
Sbjct:   179 LTGYVQLFP 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       150   0.00087  104 3  11 22  0.46    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  518 (55 KB)
  Total size of DFA:  109 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.83u 0.08s 13.91t   Elapsed:  00:00:02
  Total cpu time:  13.83u 0.08s 13.91t   Elapsed:  00:00:02
  Start:  Mon May 20 17:09:36 2013   End:  Mon May 20 17:09:38 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00