Citrus Sinensis ID: 030345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MGSKQQQVMTTDAVALPQSWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPSTI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEc
Coil and Loop (DISEMBL)
mgskqqqvmttdavalpqswgsgsnriaamnvqgrtpspnintskdfghhpddpnhkkpgwrrflsfvgpgFLVSlayldpgnletdlqagANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRymhapsti
Flexible Loop (DISEMBL)
mgskqqqvmttdavalpqswgsgSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPSTI
Low Complexity Region (SEG)
MGSKQQQVMTTDAVALPQSWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPSTI
Disordered region (IsUnstruct)
***********************************************************GWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMH*****
Disordered Region (DISOPRED)
***********************************************************GWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPSTI
Disordered Region (DISEMBL)
***********DAVALPQSWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPSTI
Disordered Region (DISPRO)
***********************************T****INTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPSTI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSKQQQVMTTDAVALPQSWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPSTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q8H4H5	538	Metal transporter Nramp5	yes	no	0.636	0.211	0.780	1e-46
Q0D7E4	518	Metal transporter Nramp1	no	no	0.715	0.247	0.669	3e-46
Q5QN13	550	Metal transporter Nramp4	no	no	0.670	0.218	0.609	3e-38
Q6ZG85	545	Metal transporter NRAT1 O	no	no	0.709	0.233	0.559	5e-38
Q653V6	550	Metal transporter Nramp3	no	no	0.642	0.209	0.608	9e-37
Q9SAH8	532	Metal transporter Nramp1	yes	no	0.787	0.265	0.506	2e-36
Q9S9N8	527	Metal transporter Nramp6	no	no	0.754	0.256	0.512	4e-36
Q9C6B2	530	Metal transporter Nramp2	no	no	0.698	0.235	0.515	3e-30
Q9FN18	512	Metal transporter Nramp4	no	no	0.642	0.224	0.530	6e-29
Q869V1	533	Metal transporter nramp1	yes	no	0.659	0.221	0.491	5e-27

>sp|Q8H4H5|NRAM5_ORYSJ Metal transporter Nramp5 OS=Oryza sativa subsp. japonica GN=NRAMP5 PE=2 SV=1

 Score =  185 bits (470), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 100/114 (87%)

Query: 57  KKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLA 116
           K+P W+RFL+ VGPGF+VSLAYLDPGNLETDLQAGANHRYELLWV+LIGLIFALIIQSLA
Sbjct: 37  KEPAWKRFLAHVGPGFMVSLAYLDPGNLETDLQAGANHRYELLWVILIGLIFALIIQSLA 96

Query: 117 ANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILL 170
           ANLGV TG+HL+E+CK+EYP  VK  LWLLAE+AVIAADIPE I +    NIL 
Sbjct: 97  ANLGVVTGRHLAEICKSEYPKFVKIFLWLLAELAVIAADIPEVIGTAFAFNILF 150

Probable metal transporter.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0D7E4|NRAM1_ORYSJ Metal transporter Nramp1 OS=Oryza sativa subsp. japonica GN=NRAMP1 PE=2 SV=1

 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 106/136 (77%), Gaps = 8/136 (5%)

Query: 46  DFGHHPDDPN-----HKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLW 100
           D G   DD        K+P W+RFLS +GPGF+V LAYLDPGN+ETDLQAGANH+YELLW
Sbjct: 12  DGGKVVDDIEALADLRKEPAWKRFLSHIGPGFMVCLAYLDPGNMETDLQAGANHKYELLW 71

Query: 101 VVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGI 160
           V+LIGLIFALIIQSL+ANLGV TG+HL+ELCK EYP+ VK CLWLLAE+AVIA+DIPE I
Sbjct: 72  VILIGLIFALIIQSLSANLGVVTGRHLAELCKTEYPVWVKTCLWLLAELAVIASDIPEVI 131

Query: 161 FSIIFLNILLRYMHAP 176
            +    N+L    H P
Sbjct: 132 GTGFAFNLLF---HIP 144

Probable metal transporter that may participate in the control of iron homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5QN13|NRAM4_ORYSJ Metal transporter Nramp4 OS=Oryza sativa subsp. japonica GN=NRAMP4 PE=2 SV=1

 Score =  157 bits (397), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 94/123 (76%), Gaps = 3/123 (2%)

Query: 48  GHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLI 107
           G H D    + P W+RFL+ VGPGF++S+AYLDP NL+TDL AG++HRY LLWV+L G I
Sbjct: 59  GLHGDV---QAPTWKRFLAHVGPGFVISIAYLDPSNLQTDLVAGSSHRYSLLWVLLFGFI 115

Query: 108 FALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLN 167
           F L +QSLAANLG+ TG+HL+ELC  EYP  VKYCLWLLAE+ VIAA IP  + + +  N
Sbjct: 116 FVLTVQSLAANLGIITGRHLAELCMGEYPKYVKYCLWLLAELGVIAATIPGVLGTALAYN 175

Query: 168 ILL 170
           +LL
Sbjct: 176 MLL 178

Probable metal transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZG85|NRAT1_ORYSJ Metal transporter NRAT1 OS=Oryza sativa subsp. japonica GN=NRAT1 PE=2 SV=1

 Score =  156 bits (395), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 96/127 (75%)

Query: 45  KDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLI 104
           K      D     +P WR+FL+ VGPG LV++ +LDP NLETD+QAGA+ +YELLWV+L+
Sbjct: 32  KTIDSEKDGQFRVQPRWRKFLAHVGPGALVAIGFLDPSNLETDMQAGADFKYELLWVILV 91

Query: 105 GLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSII 164
           G++FAL+IQ+LAANLGV TG+HL+ELC+ EYP  V   LW++AE+AVI+ DIPE + +  
Sbjct: 92  GMVFALLIQTLAANLGVKTGRHLAELCREEYPHYVNIFLWIIAELAVISDDIPEVLGTAF 151

Query: 165 FLNILLR 171
             NILL+
Sbjct: 152 AFNILLK 158

Metal transporter that transports the trivalent cation aluminum (Al(3+)), but does not seem to transport divalent cations such as iron (Fe(2+)), manganese (Mg(2+)) or Cadmium (Cd(2+)). Involved in Al tolerance by taking up Al in root cells, where it is detoxified by chelation with organic acid anions and sequestration into the vacuoles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q653V6|NRAM3_ORYSJ Metal transporter Nramp3 OS=Oryza sativa subsp. japonica GN=NRAMP3 PE=2 SV=1

 Score =  152 bits (385), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 89/115 (77%)

Query: 57  KKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLA 116
           +K  W+   S++GPGFLVS+AY+DPGN ETDLQAGA ++YELLW++LI    ALIIQSLA
Sbjct: 43  EKNSWKNLFSYIGPGFLVSIAYIDPGNFETDLQAGAQYKYELLWIILIASCAALIIQSLA 102

Query: 117 ANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLR 171
           A LGV TGKHL+E C+AEYP    + LW+LAE+AV+A DIPE I +   LN+L +
Sbjct: 103 ARLGVVTGKHLAEHCRAEYPKATNFILWILAELAVVACDIPEVIGTAFALNMLFK 157

Probable metal transporter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SAH8|NRAM1_ARATH Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=1 SV=1

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/152 (50%), Positives = 104/152 (68%), Gaps = 11/152 (7%)

Query: 30  MNVQGRTPSPNINTS---KDFGHHP----DDPNH----KKPGWRRFLSFVGPGFLVSLAY 78
           M   G   S  I++S   + F + P     D N     +K  W+ F +++GPGFLVS+AY
Sbjct: 1   MAATGSGRSQFISSSGGNRSFSNSPLIENSDSNQIIVSEKKSWKNFFAYLGPGFLVSIAY 60

Query: 79  LDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPII 138
           +DPGN ETDLQAGA+++YELLW++L+    AL+IQSLAANLGV TGKHL+E C+AEY  +
Sbjct: 61  IDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKV 120

Query: 139 VKYCLWLLAEIAVIAADIPEGIFSIIFLNILL 170
             + LW++AEIAV+A DIPE I +   LN+L 
Sbjct: 121 PNFMLWVVAEIAVVACDIPEVIGTAFALNMLF 152

High affinity manganese (Mn) transporter involved in Mn acquisition from the soil. Required for Mn uptake into the root in conditions of low Mn availability. Can transport iron (Fe), cadmium (Cd) and cobalt (Co).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9N8|NRAM6_ARATH Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2

 Score =  150 bits (379), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 102/154 (66%), Gaps = 19/154 (12%)

Query: 21  GSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNH----KKPGWRRFLSFVGPGFLVSL 76
            SGSNR         + SP I  S        D N     +K  W+ F S++GPGFLVS+
Sbjct: 6   ASGSNR-------SISNSPLIENS--------DSNQILVPEKKSWKNFFSYLGPGFLVSI 50

Query: 77  AYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYP 136
           AY+DPGN ETDLQ+GA ++YELLW++L+    AL+IQSLAANLGV TGKHL+E C+AEY 
Sbjct: 51  AYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEHCRAEYS 110

Query: 137 IIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILL 170
            +  + LW++AEIAV+A DIPE I +   LN+L 
Sbjct: 111 KVPNFMLWVVAEIAVVACDIPEVIGTAFALNMLF 144

Probable intracellular cadmium (Cd) transporter that participates in the distribution or availability of Cd within the cell.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6B2|NRAM2_ARATH Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1

 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/130 (51%), Positives = 86/130 (66%), Gaps = 5/130 (3%)

Query: 46  DFGHHPDDPNHKKP----GWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWV 101
           DF   PDDP          WR+   F GPGFL+S+A+LDPGNLE DLQAGA   Y LLW+
Sbjct: 47  DF-ESPDDPTTGDTPPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWL 105

Query: 102 VLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIF 161
           ++      L+IQ L+A +GV+TG+HL+ELC+ EYP   +Y LW +AE+A+I ADI E I 
Sbjct: 106 LMWATAMGLLIQMLSARVGVATGRHLAELCRDEYPTWARYVLWSMAELALIGADIQEVIG 165

Query: 162 SIIFLNILLR 171
           S I + IL R
Sbjct: 166 SAIAIQILSR 175

Seems to be involved in iron uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN18|NRAM4_ARATH Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1

 Score =  126 bits (317), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 82/115 (71%)

Query: 55  NHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQS 114
           N  K  W++   F GPGFL+S+A+LDPGNLE+DLQAGA   Y L+W+++      L+IQ 
Sbjct: 43  NSPKFSWKKLWLFTGPGFLMSIAFLDPGNLESDLQAGAIAGYSLIWLLMWATAIGLLIQL 102

Query: 115 LAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNIL 169
           L+A LGV+TG+HL+ELC+ EYP   +  LW++AEIA+I ADI E I S I + IL
Sbjct: 103 LSARLGVATGRHLAELCREEYPTWARMVLWIMAEIALIGADIQEVIGSAIAIKIL 157

Vacuolar metal transporter involved in intracellular metal homeostasis. Can transport iron (Fe), manganese (Mn) and cadmium (Cd). Regulates metal accumulation under Fe starvation. Acts redundantly with NRAMP3 to mobilize vacuolar Fe and provide sufficient Fe during seed germination. In association with NRAMP3, required for optimal growth and photosynthesis under Mn deficiency. Exports Mn from vacuoles in leaf mesophyll cells, making Mn available for functional photosystem II in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q869V1|NRAM1_DICDI Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1

 Score =  120 bits (301), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 80/118 (67%)

Query: 52  DDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALI 111
           D P+ K   ++   +F GPGFL+S+AYLDPGNLE+D+QAGA   Y+LLWV+    +    
Sbjct: 62  DKPDSKWINFKTLWAFTGPGFLMSIAYLDPGNLESDIQAGAMAGYQLLWVLFWSTVIGFW 121

Query: 112 IQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNIL 169
           +Q LA+ LGV TGKHL+E C+ +YP   +  LWL+ E+A+I +DI E I + I L IL
Sbjct: 122 LQMLASRLGVVTGKHLAEHCREQYPKTPRLLLWLMTELAIIGSDIQEVIGTAIALQIL 179

Depletes iron from the phagolysosome in an ATP-dependent process. May rather act as a symporter of protons and metal cations in an ATP-dependent process. Nramp1 overexpression protected cells from L. pneumophila infection.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
356515921	544	PREDICTED: metal transporter Nramp5-like	0.826	0.272	0.727	2e-58
224084952	585	nramp transporter [Populus trichocarpa]	0.860	0.263	0.689	6e-57
225459621	542	PREDICTED: metal transporter Nramp5 [Vit	0.854	0.282	0.701	4e-56
449464186	549	PREDICTED: metal transporter Nramp5-like	0.821	0.267	0.745	7e-56
147789288	1091	hypothetical protein VITISV_017979 [Viti	0.787	0.129	0.729	9e-55
255558616	498	metal transporter, putative [Ricinus com	0.893	0.321	0.676	3e-54
402233826	545	natural resistance-associated macrophage	0.782	0.256	0.731	1e-53
350537931	530	root-specific metal transporter [Solanum	0.782	0.264	0.707	2e-52
225459619	544	PREDICTED: metal transporter Nramp5-like	0.681	0.224	0.827	7e-52
255558618	528	metal transporter, putative [Ricinus com	0.776	0.263	0.741	4e-51

>gi|356515921|ref|XP_003526645.1| PREDICTED: metal transporter Nramp5-like [Glycine max]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 131/154 (85%), Gaps = 6/154 (3%)

Query: 17  PQSWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSL 76
           P+    GS+RIAA+NV   TPS N++T     HH    NH+KPGW++FLS+VGPGFLVSL
Sbjct: 9   PKGVNGGSSRIAAVNV---TPSNNLSTPS---HHDASSNHQKPGWKKFLSYVGPGFLVSL 62

Query: 77  AYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYP 136
           AYLDPGN+ETDLQAGA+H+YELLWV+LIGL+FALIIQSLAANLGV+TGKHLSELCKAEYP
Sbjct: 63  AYLDPGNMETDLQAGADHKYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYP 122

Query: 137 IIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILL 170
           ++VKYCLWLLAE+AVIAADIPE I +   LNIL 
Sbjct: 123 LLVKYCLWLLAELAVIAADIPEVIGTAFALNILF 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084952|ref|XP_002307454.1| nramp transporter [Populus trichocarpa] gi|222856903|gb|EEE94450.1| nramp transporter [Populus trichocarpa]

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 120/174 (68%), Positives = 131/174 (75%), Gaps = 20/174 (11%)

Query: 1   MGSKQQQVMTTDAVALPQSWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPG 60
           M   QQQ +  D   LP S    SNRIA++NV+G+ P P    + D      DPNH+KPG
Sbjct: 1   MAGIQQQQLVNDT--LPASLNGSSNRIASVNVEGQ-PQP---WADDLDLQ--DPNHQKPG 52

Query: 61  WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLG 120
           WR+FLS+VGPGFLVSLAYLDPGNLETDLQAGANHRYELLWV+LIGLIFALIIQSLAANLG
Sbjct: 53  WRKFLSYVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVILIGLIFALIIQSLAANLG 112

Query: 121 VST------------GKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFS 162
           VST            GKHLSELCK EYP  VKYCLWLLAEI+VIAADIPEGI S
Sbjct: 113 VSTGKTFKHHTSWILGKHLSELCKTEYPKYVKYCLWLLAEISVIAADIPEGIIS 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459621|ref|XP_002284556.1| PREDICTED: metal transporter Nramp5 [Vitis vinifera] gi|302141782|emb|CBI18985.3| unnamed protein product [Vitis vinifera]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/171 (70%), Positives = 131/171 (76%), Gaps = 18/171 (10%)

Query: 1   MGSKQQQVMTTDAVALPQSWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPG 60
           MGS + QV  T           GS RIAA++    TP P    S+    H  D + +KPG
Sbjct: 1   MGSLEHQVGNT-----------GSKRIAALD----TPPP---PSRSHAAHHLDLDDQKPG 42

Query: 61  WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLG 120
           WR+FL+FVGPGFLVSLAYLDPGNLETDLQAGANH +ELLWVVLIGLIFALIIQSLAANLG
Sbjct: 43  WRKFLAFVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLG 102

Query: 121 VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLR 171
           VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPE I +   LNIL +
Sbjct: 103 VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEVIGTAFALNILFK 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464186|ref|XP_004149810.1| PREDICTED: metal transporter Nramp5-like [Cucumis sativus] gi|449499093|ref|XP_004160719.1| PREDICTED: metal transporter Nramp5-like [Cucumis sativus]

 Score =  221 bits (564), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 126/153 (82%), Gaps = 6/153 (3%)

Query: 19  SWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHP-DDPNHKKPGWRRFLSFVGPGFLVSLA 77
           S+G GSNRIAA+N+   TP+   N  K   H    +  H+KPGWR+FLS+VGPGFLVSLA
Sbjct: 12  SFGGGSNRIAAVNIT--TPT---NALKPQNHQEGKNTTHQKPGWRKFLSYVGPGFLVSLA 66

Query: 78  YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPI 137
           YLDPGNLETDLQAGANH +ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSE+CKAEYP 
Sbjct: 67  YLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPK 126

Query: 138 IVKYCLWLLAEIAVIAADIPEGIFSIIFLNILL 170
            VKYCLWLLAE+AVIAADIPE I +   LNIL 
Sbjct: 127 FVKYCLWLLAEVAVIAADIPEVIGTAFALNILF 159

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789288|emb|CAN60104.1| hypothetical protein VITISV_017979 [Vitis vinifera]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 125/159 (78%), Gaps = 18/159 (11%)

Query: 1   MGSKQQQVMTTDAVALPQSWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPG 60
           MGS + QV  T           GS RIAA++    TP P    S+    H  D + +KPG
Sbjct: 1   MGSLEHQVXNT-----------GSKRIAALD----TPPP---PSRSHAAHHLDLDDQKPG 42

Query: 61  WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLG 120
           WR+FL+FVGPGFLVSLAYLDPGNLETDLQAGANH +ELLWVVLIGLIFALIIQSLAANLG
Sbjct: 43  WRKFLAFVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLG 102

Query: 121 VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEG 159
           VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEG
Sbjct: 103 VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEG 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558616|ref|XP_002520333.1| metal transporter, putative [Ricinus communis] gi|223540552|gb|EEF42119.1| metal transporter, putative [Ricinus communis]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 129/170 (75%), Gaps = 10/170 (5%)

Query: 1   MGSKQQQVMTTDAVALPQSWGSGSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPG 60
           M   +QQ    D +    SWG  SNRIAA+++  + P   I+          + + +KPG
Sbjct: 1   MERVEQQQQLNDKLP-TNSWGGSSNRIAALSLDEK-PQSCIDQG--------NTSPEKPG 50

Query: 61  WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLG 120
           WR+FLS+VGPGFLVSLAYLDPGNLETDLQAGANH YELLWV+LIGLIFALIIQSLAANLG
Sbjct: 51  WRKFLSYVGPGFLVSLAYLDPGNLETDLQAGANHGYELLWVILIGLIFALIIQSLAANLG 110

Query: 121 VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILL 170
           VSTGKHLSELCKAEYP  VKYCLWLLAEIAVIAADIPE I +   LNIL 
Sbjct: 111 VSTGKHLSELCKAEYPKYVKYCLWLLAEIAVIAADIPEVIGTAFALNILF 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402233826|gb|AFQ37304.1| natural resistance-associated macrophage protein 1 [Arachis hypogaea]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 122/149 (81%), Gaps = 9/149 (6%)

Query: 23  GSNRIAAMNVQGRTPSPNINTSKDFGHHPD-DPNHKKPGWRRFLSFVGPGFLVSLAYLDP 81
           G+NR+ A+N    TP  NI        H D   NH+K GW++FLSF+GPGFLVSLAYLDP
Sbjct: 16  GNNRVVAVNA---TPPNNI-----LHIHADASSNHEKKGWKKFLSFIGPGFLVSLAYLDP 67

Query: 82  GNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKY 141
           GNLETDLQAGANHRYELLWV+LIGLIFALIIQSLAANLGVSTGKHLSE+CKAEYP +V+Y
Sbjct: 68  GNLETDLQAGANHRYELLWVILIGLIFALIIQSLAANLGVSTGKHLSEICKAEYPRLVRY 127

Query: 142 CLWLLAEIAVIAADIPEGIFSIIFLNILL 170
           CLWLLAE+AVIAADIPE I +   LNIL 
Sbjct: 128 CLWLLAELAVIAADIPEVIGTAFALNILF 156

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537931|ref|NP_001234318.1| root-specific metal transporter [Solanum lycopersicum] gi|30267434|gb|AAP21818.1| root-specific metal transporter [Solanum lycopersicum]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/154 (70%), Positives = 122/154 (79%), Gaps = 14/154 (9%)

Query: 23  GSNRIAAMNVQGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPG 82
           GS RI A+N    +P P+ N      HH +   H+K GW+ F ++VGPGFLVSLAYLDPG
Sbjct: 12  GSKRIVALN---ESPLPSNND-----HHIE---HQKHGWKNFFAYVGPGFLVSLAYLDPG 60

Query: 83  NLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYC 142
           NLETDLQAGANHRYELLWV+LIGLIFALIIQSLAANLGVSTGKHLSELC+AEYP+ VKYC
Sbjct: 61  NLETDLQAGANHRYELLWVILIGLIFALIIQSLAANLGVSTGKHLSELCRAEYPVFVKYC 120

Query: 143 LWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAP 176
           LWLLAE+AVIAADIPE I +   LNIL    H P
Sbjct: 121 LWLLAEVAVIAADIPEVIGTAFALNILF---HIP 151

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459619|ref|XP_002284550.1| PREDICTED: metal transporter Nramp5-like [Vitis vinifera]

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/122 (82%), Positives = 108/122 (88%)

Query: 50  HPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFA 109
           H  D NH+KPGWR FL+FVGPGFLVSLAYLDPGNLETDLQAG+NH YELLWVVLIGLIFA
Sbjct: 18  HRLDLNHQKPGWRNFLAFVGPGFLVSLAYLDPGNLETDLQAGSNHGYELLWVVLIGLIFA 77

Query: 110 LIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNIL 169
           L+IQSLAANLGV TGKHLSELC+AEYP  VKYCLWLLAEIAVIAADIPE I +   LNIL
Sbjct: 78  LVIQSLAANLGVITGKHLSELCRAEYPKYVKYCLWLLAEIAVIAADIPEVIGTAFALNIL 137

Query: 170 LR 171
            +
Sbjct: 138 FK 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558618|ref|XP_002520334.1| metal transporter, putative [Ricinus communis] gi|223540553|gb|EEF42120.1| metal transporter, putative [Ricinus communis]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/139 (74%), Positives = 112/139 (80%)

Query: 33  QGRTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGA 92
            G  PS  I +        + P H+K GWR+F+S+VGPGFLVSLAYLDPGNLETDLQAGA
Sbjct: 10  SGEGPSNRIPSVGKPQPCNEQPTHQKSGWRKFISYVGPGFLVSLAYLDPGNLETDLQAGA 69

Query: 93  NHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVI 152
           NH+YELLWV+LI LIFALIIQSLAANLGVSTGKHLSELCKAEYP  VKYCLWLLAEIAVI
Sbjct: 70  NHKYELLWVILIALIFALIIQSLAANLGVSTGKHLSELCKAEYPKHVKYCLWLLAEIAVI 129

Query: 153 AADIPEGIFSIIFLNILLR 171
           AADIPE I +   LNIL  
Sbjct: 130 AADIPEVIGTAFALNILFH 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
UNIPROTKB|Q0D7E4	518	NRAMP1 "Metal transporter Nram	0.653	0.225	0.725	1.7e-43
UNIPROTKB|Q6ZG85	545	NRAT1 "Metal transporter NRAT1	0.636	0.209	0.605	7.2e-36
TAIR|locus:2025677	532	NRAMP1 "natural resistance-ass	0.631	0.212	0.601	5.1e-35
TAIR|locus:2200437	527	NRAMP6 "NRAMP metal ion transp	0.631	0.214	0.601	8.3e-35
TAIR|locus:2158242	512	NRAMP4 "natural resistance ass	0.715	0.25	0.507	1.5e-29
TAIR|locus:2036751	530	NRAMP2 "NRAMP metal ion transp	0.698	0.235	0.523	4.2e-29
ZFIN|ZDB-GENE-021115-1	547	slc11a2 "solute carrier family	0.664	0.217	0.504	5.1e-28
TAIR|locus:2124172	530	NRAMP5 [Arabidopsis thaliana (	0.620	0.209	0.522	2.6e-27
UNIPROTKB|F8W1C0	148	SLC11A2 "Natural resistance-as	0.608	0.736	0.495	7.3e-27
WB|WBGene00004877	546	smf-2 [Caenorhabditis elegans	0.664	0.217	0.453	8.4e-27

UNIPROTKB|Q0D7E4 NRAMP1 "Metal transporter Nramp1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 87/120 (72%), Positives = 102/120 (85%)

Query:    57 KKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLA 116
             K+P W+RFLS +GPGF+V LAYLDPGN+ETDLQAGANH+YELLWV+LIGLIFALIIQSL+
Sbjct:    28 KEPAWKRFLSHIGPGFMVCLAYLDPGNMETDLQAGANHKYELLWVILIGLIFALIIQSLS 87

Query:   117 ANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAP 176
             ANLGV TG+HL+ELCK EYP+ VK CLWLLAE+AVIA+DIPE I +    N+L    H P
Sbjct:    88 ANLGVVTGRHLAELCKTEYPVWVKTCLWLLAELAVIASDIPEVIGTGFAFNLLF---HIP 144

GO:0005381 "iron ion transmembrane transporter activity" evidence=IDA

GO:0034755 "iron ion transmembrane transport" evidence=IDA

UNIPROTKB|Q6ZG85 NRAT1 "Metal transporter NRAT1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 69/114 (60%), Positives = 94/114 (82%)

Query:    58 KPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAA 117
             +P WR+FL+ VGPG LV++ +LDP NLETD+QAGA+ +YELLWV+L+G++FAL+IQ+LAA
Sbjct:    45 QPRWRKFLAHVGPGALVAIGFLDPSNLETDMQAGADFKYELLWVILVGMVFALLIQTLAA 104

Query:   118 NLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLR 171
             NLGV TG+HL+ELC+ EYP  V   LW++AE+AVI+ DIPE + +    NILL+
Sbjct:   105 NLGVKTGRHLAELCREEYPHYVNIFLWIIAELAVISDDIPEVLGTAFAFNILLK 158

GO:0005886 "plasma membrane" evidence=IDA

GO:0010044 "response to aluminum ion" evidence=IMP

GO:0015083 "aluminum ion transmembrane transporter activity" evidence=IDA

GO:0015690 "aluminum cation transport" evidence=IMP

GO:0005381 "iron ion transmembrane transporter activity" evidence=IDA

GO:0005384 "manganese ion transmembrane transporter activity" evidence=IDA

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

TAIR|locus:2025677 NRAMP1 "natural resistance-associated macrophage protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 68/113 (60%), Positives = 91/113 (80%)

Query:    57 KKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLA 116
             +K  W+ F +++GPGFLVS+AY+DPGN ETDLQAGA+++YELLW++L+    AL+IQSLA
Sbjct:    39 EKKSWKNFFAYLGPGFLVSIAYIDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLA 98

Query:   117 ANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNIL 169
             ANLGV TGKHL+E C+AEY  +  + LW++AEIAV+A DIPE I +   LN+L
Sbjct:    99 ANLGVVTGKHLAEQCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFALNML 151

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IGI

GO:0034755 "iron ion transmembrane transport" evidence=IGI

GO:0005384 "manganese ion transmembrane transporter activity" evidence=IMP;IDA;TAS

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

GO:0070574 "cadmium ion transmembrane transport" evidence=IDA

GO:0071421 "manganese ion transmembrane transport" evidence=IDA

GO:0006828 "manganese ion transport" evidence=RCA;TAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

GO:0015691 "cadmium ion transport" evidence=RCA;TAS

GO:0015692 "lead ion transport" evidence=TAS

GO:0030001 "metal ion transport" evidence=TAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0055071 "manganese ion homeostasis" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2200437 NRAMP6 "NRAMP metal ion transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 68/113 (60%), Positives = 90/113 (79%)

Query:    57 KKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLA 116
             +K  W+ F S++GPGFLVS+AY+DPGN ETDLQ+GA ++YELLW++L+    AL+IQSLA
Sbjct:    31 EKKSWKNFFSYLGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALVIQSLA 90

Query:   117 ANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNIL 169
             ANLGV TGKHL+E C+AEY  +  + LW++AEIAV+A DIPE I +   LN+L
Sbjct:    91 ANLGVVTGKHLAEHCRAEYSKVPNFMLWVVAEIAVVACDIPEVIGTAFALNML 143

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=ISS;NAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=ISS;NAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

GO:0070574 "cadmium ion transmembrane transport" evidence=IDA

GO:0006828 "manganese ion transport" evidence=RCA

GO:0015691 "cadmium ion transport" evidence=RCA

TAIR|locus:2158242 NRAMP4 "natural resistance associated macrophage protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 66/130 (50%), Positives = 90/130 (69%)

Query:    41 INTSKDFGHHPDDP-NHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELL 99
             I+  +D   + DDP N  K  W++   F GPGFL+S+A+LDPGNLE+DLQAGA   Y L+
Sbjct:    29 IDEEED-ADYDDDPGNSPKFSWKKLWLFTGPGFLMSIAFLDPGNLESDLQAGAIAGYSLI 87

Query:   100 WVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEG 159
             W+++      L+IQ L+A LGV+TG+HL+ELC+ EYP   +  LW++AEIA+I ADI E 
Sbjct:    88 WLLMWATAIGLLIQLLSARLGVATGRHLAELCREEYPTWARMVLWIMAEIALIGADIQEV 147

Query:   160 IFSIIFLNIL 169
             I S I + IL
Sbjct:   148 IGSAIAIKIL 157

GO:0005215 "transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005384 "manganese ion transmembrane transporter activity" evidence=TAS

GO:0006828 "manganese ion transport" evidence=RCA;IMP;TAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

GO:0015691 "cadmium ion transport" evidence=RCA;TAS

GO:0015692 "lead ion transport" evidence=TAS

GO:0030001 "metal ion transport" evidence=TAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006879 "cellular iron ion homeostasis" evidence=IGI

GO:0009624 "response to nematode" evidence=IEP

GO:0010039 "response to iron ion" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IMP

TAIR|locus:2036751 NRAMP2 "NRAMP metal ion transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 4.2e-29, P = 4.2e-29
 Identities = 68/130 (52%), Positives = 87/130 (66%)

Query:    46 DFGHHPDDPN--HKKP--GWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWV 101
             DF   PDDP      P   WR+   F GPGFL+S+A+LDPGNLE DLQAGA   Y LLW+
Sbjct:    47 DF-ESPDDPTTGDTPPPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWL 105

Query:   102 VLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIF 161
             ++      L+IQ L+A +GV+TG+HL+ELC+ EYP   +Y LW +AE+A+I ADI E I 
Sbjct:   106 LMWATAMGLLIQMLSARVGVATGRHLAELCRDEYPTWARYVLWSMAELALIGADIQEVIG 165

Query:   162 SIIFLNILLR 171
             S I + IL R
Sbjct:   166 SAIAIQILSR 175

GO:0005215 "transporter activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=ISS;NAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=ISS;NAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

ZFIN|ZDB-GENE-021115-1 slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Danio rerio (taxid:7955)]

 Score = 318 (117.0 bits), Expect = 5.1e-28, P = 5.1e-28
 Identities = 60/119 (50%), Positives = 83/119 (69%)

Query:    51 PDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFAL 110
             PDD   K   +R+  +F GPGFL+S+AYLDPGN+E+DLQ+GA   ++LLWV+L   I  L
Sbjct:    44 PDDGTEKLFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAKAGFKLLWVLLGATIIGL 103

Query:   111 IIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNIL 169
             ++Q LAA LGV TG HL+E+C   YP + +  LWL+ E+A+I +D+ E I   I LN+L
Sbjct:   104 LLQRLAARLGVVTGMHLAEVCNRHYPTVPRIILWLMVELAIIGSDMQEVIGCAIALNLL 162

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005381 "iron ion transmembrane transporter activity" evidence=IDA

GO:0042541 "hemoglobin biosynthetic process" evidence=IMP

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0046688 "response to copper ion" evidence=IDA

GO:0010039 "response to iron ion" evidence=IDA

GO:0010038 "response to metal ion" evidence=IDA

TAIR|locus:2124172 NRAMP5 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 2.6e-27, P = 2.6e-27
 Identities = 58/111 (52%), Positives = 80/111 (72%)

Query:    61 WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLG 120
             W +   F GPGFL+S+A+LDPGN+E DLQAGA   Y LLW++L   +  L++Q L+A +G
Sbjct:    67 WAKLWKFTGPGFLMSIAFLDPGNIEGDLQAGAVAGYSLLWLLLWATLMGLLMQLLSARIG 126

Query:   121 VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLR 171
             V+TG+HL+E+C++EYP   +  LW +AE+A+I ADI E I S I L IL R
Sbjct:   127 VATGRHLAEICRSEYPSWARILLWFMAEVALIGADIQEVIGSAIALQILTR 177

GO:0005215 "transporter activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=ISS;NAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=ISS;NAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

GO:0006828 "manganese ion transport" evidence=RCA

GO:0015691 "cadmium ion transport" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

UNIPROTKB|F8W1C0 SLC11A2 "Natural resistance-associated macrophage protein 2" [Homo sapiens (taxid:9606)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 54/109 (49%), Positives = 82/109 (75%)

Query:    61 WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLG 120
             +R+  +F GPGFL+S+AYLDPGN+E+DLQ+GA   ++LLW++L+  +  L++Q LAA LG
Sbjct:    20 FRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQRLAARLG 79

Query:   121 VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNIL 169
             V TG HL+E+C  +YP + +  LWL+ E+A+I +D+ E I S I +N+L
Sbjct:    80 VVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLL 128

GO:0005215 "transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00004877 smf-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 307 (113.1 bits), Expect = 8.4e-27, P = 8.4e-27
 Identities = 54/119 (45%), Positives = 85/119 (71%)

Query:    51 PDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFAL 110
             P+D  +    WR+  +F GPGFL+S+AYLDPGN+E+DLQAGA   Y+LLWV+L+  I  +
Sbjct:    30 PEDEKNTWFSWRKLWAFTGPGFLMSIAYLDPGNIESDLQAGAQAEYKLLWVLLVSHIVGM 89

Query:   111 IIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNIL 169
             ++Q ++A LGV +GKH++E+    YP++ +  LWL+ EIA++ +D+ E I + I + +L
Sbjct:    90 LLQRMSARLGVVSGKHMAEIAYDYYPLVPRIILWLMIEIAIVCSDMQEVIGTAIAIYLL 148

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0043229 "intracellular organelle" evidence=IDA

GO:0010042 "response to manganese ion" evidence=IMP

GO:0010038 "response to metal ion" evidence=IGI

GO:0055071 "manganese ion homeostasis" evidence=IMP

GO:0055072 "iron ion homeostasis" evidence=IMP

GO:0046915 "transition metal ion transmembrane transporter activity" evidence=ISS

GO:0000041 "transition metal ion transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H4H5	NRAM5_ORYSJ	No assigned EC number	0.7807	0.6368	0.2118	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
TIGR01197	390	TIGR01197, nramp, NRAMP (natural resistance-associ	8e-42
PRK00701	439	PRK00701, PRK00701, manganese transport protein Mn	5e-38
COG1914	416	COG1914, MntH, Mn2+ and Fe2+ transporters of the N	6e-28
pfam01566	364	pfam01566, Nramp, Natural resistance-associated ma	1e-22

>gnl|CDD|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters

 Score =  143 bits (363), Expect = 8e-42
 Identities = 60/115 (52%), Positives = 82/115 (71%), Gaps = 3/115 (2%)

Query: 62  RRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGV 121
           R+  +F+GPGFL+S+AY+DPGN  TDLQAGA   Y+LLWV+L+  I AL++Q L A LGV
Sbjct: 1   RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGV 60

Query: 122 STGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAP 176
            TG  L+E+C+  YP + +  LW+LAE+A+IA D+ E I + I LN+L    H P
Sbjct: 61  VTGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLL---SHIP 112

This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival [Transport and binding proteins, Cations and iron carrying compounds]. Length = 390

>gnl|CDD|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed

 Score =  134 bits (340), Expect = 5e-38
 Identities = 49/117 (41%), Positives = 81/117 (69%)

Query: 55  NHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQS 114
           +  +  W+R L+F+GP FLV++ Y+DPGN  T++Q G+   Y LLWV+L+  + A+++QS
Sbjct: 24  SSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQS 83

Query: 115 LAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLR 171
           L+A LG++TG+ L++ C+  YP  V + LW+ AE+A++A D+ E I + I L +L  
Sbjct: 84  LSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG 140

Length = 439

>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

 Score =  107 bits (269), Expect = 6e-28
 Identities = 54/111 (48%), Positives = 73/111 (65%)

Query: 61  WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLG 120
            R+ L+ +GPGFLV++AY+DPGN+ T  QAGA + Y LLWV+L+  + A I+Q L+A LG
Sbjct: 13  LRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLG 72

Query: 121 VSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLR 171
           + TGK L+E  +  Y   +   LW+LAEIA IA DI E     I LN+L  
Sbjct: 73  IVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG 123

Length = 416

>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein

 Score = 92.2 bits (230), Expect = 1e-22
 Identities = 38/87 (43%), Positives = 57/87 (65%)

Query: 84  LETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL 143
           + T++QAGA   Y LLWV+L+  + A+++Q L+A LG+ TGK L+EL +  +   V + L
Sbjct: 1   IATNIQAGARFGYSLLWVLLLSNLMAIVLQELSARLGLVTGKGLAELIRERFGRPVGWLL 60

Query: 144 WLLAEIAVIAADIPEGIFSIIFLNILL 170
           W+LAE+A  A D+ E I   I LN+L 
Sbjct: 61  WILAELANAATDLAEFIGGAIALNLLF 87

The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations. Length = 364

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG1291	503	consensus Mn2+ and Fe2+ transporters of the NRAMP	100.0
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	100.0
PRK00701	439	manganese transport protein MntH; Reviewed	100.0
TIGR01197	390	nramp NRAMP (natural resistance-associated macroph	100.0
PF01566	358	Nramp: Natural resistance-associated macrophage pr	99.88
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	97.27
TIGR00813	407	sss transporter, SSS family. have different number	97.08
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	97.02
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	96.99
PRK09395	551	actP acetate permease; Provisional	96.91
PRK12488	549	acetate permease; Provisional	96.89
PRK09442	483	panF sodium/panthothenate symporter; Provisional	96.8
PRK15419	502	proline:sodium symporter PutP; Provisional	96.43
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	96.26
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	96.08
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	95.79
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	94.83
COG4145	473	PanF Na+/panthothenate symporter [Coenzyme metabol	93.68
PRK11017	404	codB cytosine permease; Provisional	93.27
PRK10484	523	putative transporter; Provisional	92.31
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	92.22
COG4147	529	DhlC Predicted symporter [General function predict	91.86
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	91.62
PRK11375	484	allantoin permease; Provisional	91.41
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	91.24
COG1966	575	CstA Carbon starvation protein, predicted membrane	91.14
COG3949	349	Uncharacterized membrane protein [Function unknown	89.05
TIGR00814	397	stp serine transporter. The HAAAP family includes	86.84
PRK15015	701	carbon starvation protein A; Provisional	85.35
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	84.05
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	82.63
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	82.08
PRK10249	458	phenylalanine transporter; Provisional	80.81
PRK13629	443	threonine/serine transporter TdcC; Provisional	80.24

>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-38  Score=291.82  Aligned_cols=123  Identities=54%  Similarity=0.910  Sum_probs=120.1

Q ss_pred             CCchhHHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHc
Q 030345           56 HKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEY  135 (179)
Q Consensus        56 ~~~~~~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~  135 (179)
                      ..+.+|||+++++||||++++||+||||+.|+.|+||++||+|||++++++++++++|++|+|+|+||||+|+|.||++|
T Consensus        20 ~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~Y   99 (503)
T KOG1291|consen   20 PPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREEY   99 (503)
T ss_pred             ccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 030345          136 PIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPST  178 (179)
Q Consensus       136 gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~~  178 (179)
                      +|+.++.+|+.+|++.+++|++|++|+|+|+|+||++|.+.|+
T Consensus       100 pk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GV  142 (503)
T KOG1291|consen  100 PKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGV  142 (503)
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHH
Confidence            9999999999999999999999999999999999999988775

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.9e-35  Score=266.50  Aligned_cols=121  Identities=45%  Similarity=0.711  Sum_probs=117.2

Q ss_pred             CchhHHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcC
Q 030345           57 KKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYP  136 (179)
Q Consensus        57 ~~~~~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~g  136 (179)
                      +..+||++++++|||++++++|+||||++|++++|++|||+|+|++++++++++++|++++|+|++|||+++|.|||||+
T Consensus         9 ~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~   88 (416)
T COG1914           9 KRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYL   88 (416)
T ss_pred             hHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHcc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          137 IIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       137 k~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      |++.+++|+.++++++++|++|++|+|+|+|++||+|+..+
T Consensus        89 ~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g  129 (416)
T COG1914          89 PGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIG  129 (416)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            99999999999999999999999999999999999997655

>PRK00701 manganese transport protein MntH; Reviewed

Probab=100.00  E-value=5.2e-35  Score=266.33  Aligned_cols=136  Identities=38%  Similarity=0.750  Sum_probs=125.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 030345           35 RTPSPNINTSKDFGHHPDDPNHKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQS  114 (179)
Q Consensus        35 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~  114 (179)
                      .+|.+|.|.+...+       ++++.+|++++++|||++++++|+||||++|++++||+|||+|||++++++++++++|+
T Consensus        11 ~~~~~~~~~~~~~~-------~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~   83 (439)
T PRK00701         11 PFSLSEVNGSVAVS-------SGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQS   83 (439)
T ss_pred             CCChhhhcccccCC-------CcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            34455666655555       34567999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          115 LAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       115 ~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      +++|+|++|||+++|.||+||||++++++|+.+++++++++++|++|+++|+|++||+|.+++
T Consensus        84 ~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~  146 (439)
T PRK00701         84 LSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQG  146 (439)
T ss_pred             HHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999996654

>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters

Probab=100.00  E-value=4.9e-33  Score=250.55  Aligned_cols=116  Identities=50%  Similarity=0.877  Sum_probs=111.6

Q ss_pred             HHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHH
Q 030345           62 RRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKY  141 (179)
Q Consensus        62 ~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~  141 (179)
                      |++++++|||++++++|+||||++|++++||+|||+|||++++++++++++|++++|+|++|||+++|.|||+|||+..+
T Consensus         1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~   80 (390)
T TIGR01197         1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI   80 (390)
T ss_pred             CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          142 CLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       142 ~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      .+|+.++++.++++++|++|+++|+|++||+|.+.+
T Consensus        81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~  116 (390)
T TIGR01197        81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGG  116 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            999999999999999999999999999999996543

This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2

Probab=99.88  E-value=3.8e-23  Score=181.89  Aligned_cols=94  Identities=35%  Similarity=0.461  Sum_probs=90.8

Q ss_pred             hhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030345           84 LETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSI  163 (179)
Q Consensus        84 i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~a  163 (179)
                      |+|++++||+|||+|||++++++++++++|++++|+|++|||++.|.+|+||||++.+++|+.+++++++++++|++|++
T Consensus         1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a   80 (358)
T PF01566_consen    1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA   80 (358)
T ss_pred             CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCC
Q 030345          164 IFLNILLRYMHAPS  177 (179)
Q Consensus       164 iaL~lLfgip~~~~  177 (179)
                      +|+|+++|+|.++.
T Consensus        81 ~al~ll~g~~~~~~   94 (358)
T PF01566_consen   81 IALNLLFGIPLWIW   94 (358)
T ss_pred             HHHHhhcCCCcHHH
Confidence            99999999997543

The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=97.27  E-value=0.0028  Score=56.38  Aligned_cols=103  Identities=12%  Similarity=0.021  Sum_probs=76.0

Q ss_pred             hhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHH-HHHHhHhhhhcCCCHHHHHHhHcCchH--HHHHHHHHHHH
Q 030345           74 VSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALII-QSLAANLGVSTGKHLSELCKAEYPIIV--KYCLWLLAEIA  150 (179)
Q Consensus        74 vaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~l-Q~~aaRlgivTG~~L~e~ir~~~gk~~--~~~l~i~~~l~  150 (179)
                      ..+..++.+++.-....+.++|+.-+|..+...+...++ -.++-|+-.....|+.|.+++|||++.  +.+..+...+.
T Consensus        17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~   96 (406)
T PF00474_consen   17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF   96 (406)
T ss_dssp             HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence            345578888888899999999999999887766665544 346788888888999999999999988  55555555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCC
Q 030345          151 VIAADIPEGIFSIIFLNILLRYMHAP  176 (179)
Q Consensus       151 ~i~t~laeiiG~aiaL~lLfgip~~~  176 (179)
                      .+....+++.|.+..++.++|+|...
T Consensus        97 ~~~~~~~q~~~~~~~~~~~~gi~~~~  122 (406)
T PF00474_consen   97 MIPYLAAQLVGGGALLSVLFGIPYNT  122 (406)
T ss_dssp             HHTHHHHHHHHHHHHHHHHTT--HHH
T ss_pred             hhhhhhccccccccchhhccchhhhH
Confidence            66677788899999999999998543

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>TIGR00813 sss transporter, SSS family

Probab=97.08  E-value=0.0032  Score=56.25  Aligned_cols=103  Identities=10%  Similarity=0.025  Sum_probs=72.7

Q ss_pred             HhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHH----HHHHHhHhhhhcCCCHHHHHHhHcCch-HHHHHHHH
Q 030345           72 FLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALI----IQSLAANLGVSTGKHLSELCKAEYPII-VKYCLWLL  146 (179)
Q Consensus        72 ~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~----lQ~~aaRlgivTG~~L~e~ir~~~gk~-~~~~l~i~  146 (179)
                      +-+++.+++.++.......+.++|+..+|..+...+..++    +...--|.+   ..++.|.+++||+++ .+.+.-+.
T Consensus        12 ~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~~   88 (407)
T TIGR00813        12 ASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVLS   88 (407)
T ss_pred             HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHHH
Confidence            3345668888888889999999998887765544433332    222223333   689999999999985 44443444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          147 AEIAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       147 ~~l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      ..+..+..-.+++.|.+..++.++|+|+..+
T Consensus        89 ~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~  119 (407)
T TIGR00813        89 LILYIFLYMSVDLFSGALLIELITGLDLYLS  119 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            5556666777888999999999999996544

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>TIGR02119 panF sodium/pantothenate symporter

Probab=97.02  E-value=0.0044  Score=56.59  Aligned_cols=104  Identities=10%  Similarity=0.055  Sum_probs=65.9

Q ss_pred             hhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHH-HHHHHhHh---hh-hcCCCHHHHHHhHcCch-HHHHHHHHH
Q 030345           74 VSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALI-IQSLAANL---GV-STGKHLSELCKAEYPII-VKYCLWLLA  147 (179)
Q Consensus        74 vaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~-lQ~~aaRl---gi-vTG~~L~e~ir~~~gk~-~~~~l~i~~  147 (179)
                      +.+++++.+++......+.++|+...|......++.++ +-.++.|+   +- ..-.|+.|.+++||+++ .+++..+..
T Consensus        51 ~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~  130 (471)
T TIGR02119        51 LVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSISL  130 (471)
T ss_pred             HHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHHH
Confidence            44567888888888888888887643332222222221 11122232   11 13469999999999955 455545555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          148 EIAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       148 ~l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      .+..+....+++.|.+..++.++|+|...+
T Consensus       131 i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~  160 (471)
T TIGR02119       131 LVFFFSAMVAQFIGGARLIESLTGLSYLTA  160 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            555666667888999999999999996554

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=96.99  E-value=0.004  Score=58.63  Aligned_cols=107  Identities=11%  Similarity=0.063  Sum_probs=75.7

Q ss_pred             hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHH--HHHHHHhHhhhhcCCCHHHHHHhHcC-chHHHHHHHHH
Q 030345           71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFAL--IIQSLAANLGVSTGKHLSELCKAEYP-IIVKYCLWLLA  147 (179)
Q Consensus        71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~--~lQ~~aaRlgivTG~~L~e~ir~~~g-k~~~~~l~i~~  147 (179)
                      |+-+++.+++..++.-......++|++-+|..+ +.++.+  ..-.++-|+-.....|+.|.+++||+ |..+.+..+..
T Consensus        75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~  153 (549)
T TIGR02711        75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS  153 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence            334555677777777777788889998877553 332222  12234555555556899999999996 55676666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 030345          148 EIAVIAADIPEGIFSIIFLNILLRYMHAPST  178 (179)
Q Consensus       148 ~l~~i~t~laeiiG~aiaL~lLfgip~~~~~  178 (179)
                      .+..+..-.+++.|.+..++.++|+|+..++
T Consensus       154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~i  184 (549)
T TIGR02711       154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAV  184 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            6666777788889999999999999976543

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>PRK09395 actP acetate permease; Provisional

Probab=96.91  E-value=0.005  Score=57.88  Aligned_cols=107  Identities=10%  Similarity=-0.030  Sum_probs=75.0

Q ss_pred             hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHH-HHHHHhHhhhhcCCCHHHHHHhHcC-chHHHHHHHHHH
Q 030345           71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALI-IQSLAANLGVSTGKHLSELCKAEYP-IIVKYCLWLLAE  148 (179)
Q Consensus        71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~-lQ~~aaRlgivTG~~L~e~ir~~~g-k~~~~~l~i~~~  148 (179)
                      |+-+.+.++...++......+..+|+.-.|..+-..+...+ .-..+-|+=-..-.|..|.+++||+ |+.+.+..+...
T Consensus        77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~i  156 (551)
T PRK09395         77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGSL  156 (551)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHHH
Confidence            34455667888888888888888898876654422221111 1223555555556899999999998 456776666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          149 IAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       149 l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      +..+..-.+++.|.+..++.++|+|++.+
T Consensus       157 v~~~~yl~~q~~g~g~il~~~~gi~~~~~  185 (551)
T PRK09395        157 VVVALYLIAQMVGAGKLIQLLFGLNYHVA  185 (551)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            67777778889999999999999997654

>PRK12488 acetate permease; Provisional

Probab=96.89  E-value=0.005  Score=57.99  Aligned_cols=107  Identities=10%  Similarity=0.023  Sum_probs=77.6

Q ss_pred             hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHH--HHHHhHhhhhcCCCHHHHHHhHcC-chHHHHHHHHH
Q 030345           71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALII--QSLAANLGVSTGKHLSELCKAEYP-IIVKYCLWLLA  147 (179)
Q Consensus        71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~l--Q~~aaRlgivTG~~L~e~ir~~~g-k~~~~~l~i~~  147 (179)
                      |+-+++.++...++.-....+..+|+.-+|..+ +..+.+++  -.++-|+--..-.|+.|.+++||+ |+.+.+..+..
T Consensus        75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~  153 (549)
T PRK12488         75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT  153 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence            444566678888888888888889998877653 23322221  234555544445799999999998 56777766777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 030345          148 EIAVIAADIPEGIFSIIFLNILLRYMHAPST  178 (179)
Q Consensus       148 ~l~~i~t~laeiiG~aiaL~lLfgip~~~~~  178 (179)
                      .+..+..-.+++.|.+..++.++|+|+..++
T Consensus       154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~i  184 (549)
T PRK12488        154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAV  184 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            7777788888999999999999999976553

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=96.80  E-value=0.0093  Score=54.84  Aligned_cols=102  Identities=12%  Similarity=0.064  Sum_probs=63.9

Q ss_pred             HhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHH-HHHHHHhHh---h-hhcCCCHHHHHHhHcCchH-HHHHHHHHHH
Q 030345           76 LAYLDPGNLETDLQAGANHRYELLWVVLIGLIFAL-IIQSLAANL---G-VSTGKHLSELCKAEYPIIV-KYCLWLLAEI  149 (179)
Q Consensus        76 aa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~-~lQ~~aaRl---g-ivTG~~L~e~ir~~~gk~~-~~~l~i~~~l  149 (179)
                      +.+++.+++........++|+...|..+...+..+ .+..++.|+   + -.-..|..|.+++||+++. +++..+...+
T Consensus        54 at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~  133 (483)
T PRK09442         54 ATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLLV  133 (483)
T ss_pred             HHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHHH
Confidence            55677777777777778888775554332222111 111122222   1 1235789999999999764 4443333444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          150 AVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       150 ~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      ..+.....++.|.+..++.++|+|+..+
T Consensus       134 ~~~~~~~~ql~~~g~~l~~~~gi~~~~~  161 (483)
T PRK09442        134 FFFAAMTAQFIGGARLLETATGISYETG  161 (483)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            4555667788899999999999997654

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=96.43  E-value=0.014  Score=54.24  Aligned_cols=104  Identities=11%  Similarity=-0.040  Sum_probs=68.4

Q ss_pred             hhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHH-HHHHHHhHhhhhc-----CCCHHHHHHhHcCc---hHHHHHH
Q 030345           74 VSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFAL-IIQSLAANLGVST-----GKHLSELCKAEYPI---IVKYCLW  144 (179)
Q Consensus        74 vaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~-~lQ~~aaRlgivT-----G~~L~e~ir~~~gk---~~~~~l~  144 (179)
                      +.+.++...++.-....+.++|+...|..+-..+..+ ....+..|+-+-+     -.|+.|.+++||++   .++.+..
T Consensus        51 ~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~  130 (502)
T PRK15419         51 AGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISA  130 (502)
T ss_pred             HHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHH
Confidence            3445777777777777888889888776653333222 2333455655332     25899999999985   3443334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          145 LLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       145 i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      +...+..+....+++.|.+..++.++|+|...+
T Consensus       131 i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~  163 (502)
T PRK15419        131 LVILLFFTIYCASGIVAGARLFESTFGMSYETA  163 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            444444555566777889999999999996654

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=96.26  E-value=0.02  Score=53.81  Aligned_cols=104  Identities=10%  Similarity=0.059  Sum_probs=71.2

Q ss_pred             HhhhHhhcCCCchhhhhhHHhhhhhhHHHHHH---HHH-HHHHHHHHHHhHhhhhcCCCHHHHHHhHcCch-HHHHHHHH
Q 030345           72 FLVSLAYLDPGNLETDLQAGANHRYELLWVVL---IGL-IFALIIQSLAANLGVSTGKHLSELCKAEYPII-VKYCLWLL  146 (179)
Q Consensus        72 ~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvl---ls~-i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~-~~~~l~i~  146 (179)
                      +-+.+.++...++.-....+.++||..+|..+   ++. ++.+++-..--|.+.   .|+.|.+++||+++ .+.+..+.
T Consensus        41 ~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i~  117 (552)
T TIGR03648        41 MATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVIC  117 (552)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHHH
Confidence            33455567777777777777888887766653   111 233444555556654   58999999999854 45555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 030345          147 AEIAVIAADIPEGIFSIIFLNILLRYMHAPST  178 (179)
Q Consensus       147 ~~l~~i~t~laeiiG~aiaL~lLfgip~~~~~  178 (179)
                      ..+..+.....++.|.+..++.++|+|+..++
T Consensus       118 ~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~i  149 (552)
T TIGR03648       118 AIFISFTYVAGQMRGVGVVFSRFLEVDFETGV  149 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            55666677777888999999999999976553

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=96.08  E-value=0.038  Score=51.00  Aligned_cols=102  Identities=13%  Similarity=-0.023  Sum_probs=61.7

Q ss_pred             HhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHH-HHHHHhHhhhhc-----CCCHHHHHHhHcCch---HHHHHHHH
Q 030345           76 LAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALI-IQSLAANLGVST-----GKHLSELCKAEYPII---VKYCLWLL  146 (179)
Q Consensus        76 aa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~-lQ~~aaRlgivT-----G~~L~e~ir~~~gk~---~~~~l~i~  146 (179)
                      +.++...++.-......++|+.-.|..+-..+..++ .-..+-|+-..+     -.|+.|.+++||+++   .+.+..+.
T Consensus        49 At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~  128 (487)
T TIGR02121        49 ASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALI  128 (487)
T ss_pred             HHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHH
Confidence            445555555555666777888777775422222221 122344444333     357999999999853   33333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          147 AEIAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       147 ~~l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      ..+..+.....++.|.+..++.++|+|+..+
T Consensus       129 ~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~  159 (487)
T TIGR02121       129 ILVFFTIYTSSGLVAGGKLFESTFGLDYKTG  159 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            4444445566777888999999999997654

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=95.79  E-value=0.051  Score=50.73  Aligned_cols=109  Identities=17%  Similarity=0.140  Sum_probs=77.5

Q ss_pred             hhchhHhhhHh--hcCCCchhhhhhHHhhh--hhhHHHHHHHHHHHHH-HHHHHHhHhhhhc----CCCHHHHHHhHcC-
Q 030345           67 FVGPGFLVSLA--YLDPGNLETDLQAGANH--RYELLWVVLIGLIFAL-IIQSLAANLGVST----GKHLSELCKAEYP-  136 (179)
Q Consensus        67 ~lGPG~lvaaa--~idPG~i~T~~~aGA~f--GY~LLWvvlls~i~~~-~lQ~~aaRlgivT----G~~L~e~ir~~~g-  136 (179)
                      .+||. +.+.+  .-|-+.++.--..|.-|  |+.-+|..+...+..+ ..-..+-|+=..+    =.++.|.+++||+ 
T Consensus        39 ~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s  117 (493)
T COG0591          39 SLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGS  117 (493)
T ss_pred             cCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCC
Confidence            46666 33322  34444555555555555  9999999888744444 4444555666666    5699999999999 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 030345          137 IIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAP  176 (179)
Q Consensus       137 k~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~  176 (179)
                      +..+.+.-+...+..+.....++.|.+..++..+|++...
T Consensus       118 ~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~  157 (493)
T COG0591         118 KILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVT  157 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHH
Confidence            7777777777777888888888899999999999987543

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=94.83  E-value=0.38  Score=44.28  Aligned_cols=69  Identities=26%  Similarity=0.406  Sum_probs=48.5

Q ss_pred             HHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhh--HHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhHcCc
Q 030345           62 RRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYE--LLWVVLIGLIFALIIQSLAANLGVS--TGKHLSELCKAEYPI  137 (179)
Q Consensus        62 ~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~--LLWvvlls~i~~~~lQ~~aaRlgiv--TG~~L~e~ir~~~gk  137 (179)
                      +++...-|.|-|++            -..|+.|||-  +||++ +.+++.-.+|++.+=..-+  -||++.|.++++.||
T Consensus        60 hhf~sIAGaGPI~G------------Pi~aa~~GwlPa~lWI~-~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~  126 (376)
T PF02554_consen   60 HHFASIAGAGPIVG------------PILAAQFGWLPALLWIV-FGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGK  126 (376)
T ss_pred             HHHHHHhccccchH------------HHHHHHhcchHHHHHHH-HccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHH
Confidence            45666556666653            2345999997  77765 5667777777766655444  699999999999999


Q ss_pred             hHHHHH
Q 030345          138 IVKYCL  143 (179)
Q Consensus       138 ~~~~~l  143 (179)
                      +.+.++
T Consensus       127 ~~~~lf  132 (376)
T PF02554_consen  127 RAKKLF  132 (376)
T ss_pred             HHHHHH
Confidence            776653

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]

Probab=93.68  E-value=0.47  Score=44.31  Aligned_cols=105  Identities=16%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             hHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHH-HHHH--HHHHHHhHhhhhcCC----CHHHHHHhHc-CchHHHH
Q 030345           71 GFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGL-IFAL--IIQSLAANLGVSTGK----HLSELCKAEY-PIIVKYC  142 (179)
Q Consensus        71 G~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~-i~~~--~lQ~~aaRlgivTG~----~L~e~ir~~~-gk~~~~~  142 (179)
                      ++..++.|+...+...-  -|+.|.|.|-|+++-.. +...  .+--+.-|+.+.++|    ++.|.+|+|| ++...++
T Consensus        47 Amt~~aTYisaSSFigG--pgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~l  124 (473)
T COG4145          47 AMTFTATYISASSFIGG--PGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWL  124 (473)
T ss_pred             hhHHHHHHHHHhhhcCC--CcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHH
Confidence            44445556665555443  36778888889554332 1111  222333444444443    7899999998 4555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          143 LWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       143 l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      .-+..-+.-+....++++|.|=-++-..|+|+..+
T Consensus       125 as~~Lifff~~~m~~qfiGgarLlE~~~gidY~tg  159 (473)
T COG4145         125 ASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTG  159 (473)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhh
Confidence            55555556666677888999999999999997654

>PRK11017 codB cytosine permease; Provisional

Probab=93.27  E-value=1.3  Score=40.21  Aligned_cols=112  Identities=16%  Similarity=0.091  Sum_probs=66.8

Q ss_pred             CCchhHHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHc
Q 030345           56 HKKPGWRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEY  135 (179)
Q Consensus        56 ~~~~~~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~  135 (179)
                      +++..|.-++-++|-++..+....+.     .+..|-.+. +-++++++++++..++.-+.++.|..+|.+-....|..|
T Consensus         8 ~r~~~~~~~~~~~g~~~~~~~~~~g~-----~l~~GLs~~-~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~F   81 (404)
T PRK11017          8 ARKGVLSLTMVMLGFTFFSASMWAGG-----TLGTGLSFV-DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSF   81 (404)
T ss_pred             HhcchHhHHHHHHHHHHHHHHHHHHH-----HHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHh
Confidence            34444444667777555543332211     111233332 345788888888899999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 030345          136 PIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYM  173 (179)
Q Consensus       136 gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip  173 (179)
                      |.+-+++..+...+..++-..-|..=.+.+++-++|++
T Consensus        82 G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~~  119 (404)
T PRK11017         82 GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGLD  119 (404)
T ss_pred             chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCC
Confidence            98776654444333333222212111234455556665

>PRK10484 putative transporter; Provisional

Probab=92.31  E-value=1.1  Score=41.84  Aligned_cols=103  Identities=14%  Similarity=0.062  Sum_probs=55.2

Q ss_pred             hhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHH-HHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHH
Q 030345           74 VSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALII-QSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVI  152 (179)
Q Consensus        74 vaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~l-Q~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i  152 (179)
                      +.+.++..+++.-....+.++|+..+|..+...+...++ -..+.|+--.-=.|..|.+++||+++.....-+...+..+
T Consensus        49 l~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~  128 (523)
T PRK10484         49 LLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLIGYV  128 (523)
T ss_pred             HHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            445568888888888888888877653333222222111 1123344322335899999999998766544333333333


Q ss_pred             HHHHHHH-HHHHHHHHH------HhCCCCCC
Q 030345          153 AADIPEG-IFSIIFLNI------LLRYMHAP  176 (179)
Q Consensus       153 ~t~laei-iG~aiaL~l------Lfgip~~~  176 (179)
                      ...++.. .+.+++++-      ++|+|+..
T Consensus       129 ~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~  159 (523)
T PRK10484        129 VSFLPIVLYSGALALNSLFHVSELLGISYGA  159 (523)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhcCCcHHH
Confidence            3333222 233444443      46776543

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=92.22  E-value=1.7  Score=39.58  Aligned_cols=103  Identities=18%  Similarity=0.126  Sum_probs=67.6

Q ss_pred             hhchhHhhhHhhcCCCchhhhhh-HHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhc--CCCHHHHHHhHcCchHHHHH
Q 030345           67 FVGPGFLVSLAYLDPGNLETDLQ-AGANHRYELLWVVLIGLIFALIIQSLAANLGVST--GKHLSELCKAEYPIIVKYCL  143 (179)
Q Consensus        67 ~lGPG~lvaaa~idPG~i~T~~~-aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivT--G~~L~e~ir~~~gk~~~~~l  143 (179)
                      .+|-.++++-..+|.|=+.-=.+ +++.|.+.+ .+++++.++++.-+.+-+|+-..+  +.++.+..+|++||+++++.
T Consensus         5 ~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~-~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~   83 (394)
T PF03222_consen    5 ILGGVLLIAGTAIGAGMLALPIATAGAGFLPSL-ILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI   83 (394)
T ss_pred             HHHHHHHHHHccHhHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence            45666667666788887777665 444455544 555556666677777777777655  78999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030345          144 WLLAEIAVIAADIPEGIFSIIFLNILL  170 (179)
Q Consensus       144 ~i~~~l~~i~t~laeiiG~aiaL~lLf  170 (179)
                      ++...+.......+-+.|.+--+.-++
T Consensus        84 ~~~~~~~~y~ll~AYisg~g~~~~~~l  110 (394)
T PF03222_consen   84 GISYLFLLYALLVAYISGGGSILSSLL  110 (394)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            766555544444444444443333333

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>COG4147 DhlC Predicted symporter [General function prediction only]

Probab=91.86  E-value=1.5  Score=42.02  Aligned_cols=65  Identities=11%  Similarity=0.036  Sum_probs=53.8

Q ss_pred             HHhHhhhhcCCCHHHHHHhHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 030345          115 LAANLGVSTGKHLSELCKAEYP-IIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPSTI  179 (179)
Q Consensus       115 ~aaRlgivTG~~L~e~ir~~~g-k~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~~~  179 (179)
                      .+-|+-=.-+-+.+|.+.+||. ++.+++..+..-++.+.+.++++.|++.-+.+++|+|..++++
T Consensus        94 ~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~  159 (529)
T COG4147          94 IAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVV  159 (529)
T ss_pred             HHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehh
Confidence            3445555557789999999995 6777777788888888899999999999999999999988864

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=91.62  E-value=2.4  Score=38.63  Aligned_cols=57  Identities=19%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHH
Q 030345           96 YELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVI  152 (179)
Q Consensus        96 Y~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i  152 (179)
                      ++-++++++++++..++..+.++.|..+|.+-....|..||.+-+++..+...+..+
T Consensus        47 ~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~i  103 (442)
T TIGR00800        47 WQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAI  103 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHH
Confidence            345678888889999999999999999999999999999998776654444333333

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PRK11375 allantoin permease; Provisional

Probab=91.41  E-value=4.3  Score=37.94  Aligned_cols=47  Identities=13%  Similarity=0.268  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345           97 ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL  143 (179)
Q Consensus        97 ~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l  143 (179)
                      +.++++++++++..++-.+.++.|..+|.+..-..|..||.+-+++.
T Consensus        61 ~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~  107 (484)
T PRK11375         61 SIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFP  107 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHH
Confidence            45788889999999999999999999999999999999997765543

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=91.24  E-value=1.5  Score=39.57  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=48.4

Q ss_pred             cCCCchhhhhhHHhhhhh---hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHH
Q 030345           79 LDPGNLETDLQAGANHRY---ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAA  154 (179)
Q Consensus        79 idPG~i~T~~~aGA~fGY---~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t  154 (179)
                      +-..++.+-... ..||.   +-+.++++++++..++-...+++|..||.+-....|..||.+-+++.-++..+..++-
T Consensus        23 ~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW  100 (440)
T PF02133_consen   23 ISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRAISAIGW  100 (440)
T ss_dssp             -SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHHHHHHHH
Confidence            333444444443 44553   3567888889999999999999999999999999999999876665544443444433

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=91.14  E-value=1.9  Score=41.69  Aligned_cols=71  Identities=23%  Similarity=0.382  Sum_probs=50.1

Q ss_pred             HHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhh--hHHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhHcCc
Q 030345           62 RRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRY--ELLWVVLIGLIFALIIQSLAANLGVS--TGKHLSELCKAEYPI  137 (179)
Q Consensus        62 ~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY--~LLWvvlls~i~~~~lQ~~aaRlgiv--TG~~L~e~ir~~~gk  137 (179)
                      ++|.+.-|-|-+++            -..+|+|||  .+||++ +.++++-.+|++-.=.--+  -|+++.|..+++.|+
T Consensus        60 hHFaaIAGAGPivG------------PvlAAq~G~Lp~~LWIl-~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~  126 (575)
T COG1966          60 HHFASIAGAGPIVG------------PALAAQYGWLPAFLWIL-LGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGR  126 (575)
T ss_pred             HHHHHHhccCcchh------------HHHHHHhcCcHHHHHHH-HhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhh
Confidence            56666666666663            356899997  678865 6777777777764432222  589999999999999


Q ss_pred             hHHHHHHH
Q 030345          138 IVKYCLWL  145 (179)
Q Consensus       138 ~~~~~l~i  145 (179)
                      ..+.+..+
T Consensus       127 ~a~~~~~~  134 (575)
T COG1966         127 TAKVFFLL  134 (575)
T ss_pred             hHHHHHHH
Confidence            87766443

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=89.05  E-value=2  Score=39.25  Aligned_cols=112  Identities=8%  Similarity=0.026  Sum_probs=81.8

Q ss_pred             HHHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhh-cCCCHHHHHHhHcCchH
Q 030345           61 WRRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVS-TGKHLSELCKAEYPIIV  139 (179)
Q Consensus        61 ~~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgiv-TG~~L~e~ir~~~gk~~  139 (179)
                      .|..+.++|  .+++++|---=++.   |-=..||+.-.|-+++++++..+.-....++|-. .-++..|.++...||++
T Consensus         6 ~~~~f~~ig--~~vGAGfAsGqEi~---QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~   80 (349)
T COG3949           6 MRWAFAFIG--TVVGAGFASGQEIM---QFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKF   80 (349)
T ss_pred             HHHHHHHHH--HhhcccccchHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHH
Confidence            345566666  55555553322332   3335689999999999999988888888888866 45678888888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          140 KYCLWLLAEIAVIAADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       140 ~~~l~i~~~l~~i~t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      +...=+...+..+.+..-+..|++..+|=-||+|.+++
T Consensus        81 ~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiG  118 (349)
T COG3949          81 AKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIG  118 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHH
Confidence            88876666666667776677788877777899998876

>TIGR00814 stp serine transporter

Probab=86.84  E-value=4.8  Score=36.79  Aligned_cols=49  Identities=18%  Similarity=0.299  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhH------hhhhc-CCCHHHHHHhHcCchHHHHHHHHH
Q 030345           99 LWVVLIGLIFALIIQSLAAN------LGVST-GKHLSELCKAEYPIIVKYCLWLLA  147 (179)
Q Consensus        99 LWvvlls~i~~~~lQ~~aaR------lgivT-G~~L~e~ir~~~gk~~~~~l~i~~  147 (179)
                      .|..+++.++.+.+...++|      +.--. ++++.|..++++||++++++++.-
T Consensus        33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY   88 (397)
T TIGR00814        33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLY   88 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHH
Confidence            56666666666666666666      34344 789999999999999887765443

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK15015 carbon starvation protein A; Provisional

Probab=85.35  E-value=6.2  Score=39.13  Aligned_cols=69  Identities=25%  Similarity=0.405  Sum_probs=49.8

Q ss_pred             HHHHhhhchhHhhhHhhcCCCchhhhhhHHhhhhhh--HHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhHcCc
Q 030345           62 RRFLSFVGPGFLVSLAYLDPGNLETDLQAGANHRYE--LLWVVLIGLIFALIIQSLAANLGVS--TGKHLSELCKAEYPI  137 (179)
Q Consensus        62 ~~~l~~lGPG~lvaaa~idPG~i~T~~~aGA~fGY~--LLWvvlls~i~~~~lQ~~aaRlgiv--TG~~L~e~ir~~~gk  137 (179)
                      ++|.+.-|.|-|++            -...++|||-  +||++ +.+++.-.+|++.+=..-+  -||++.|.+|++.|+
T Consensus        91 HHFasIAGAGPivG------------PvlAa~~GwlP~~LWIl-~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~  157 (701)
T PRK15015         91 HHFAAIAGAGPLVG------------PVLAAQMGYLPGMIWLL-AGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGP  157 (701)
T ss_pred             HHHHHHhccCccHH------------HHHHHHHcchHHHHHHH-HcceeechhhhhhheeeeecCCCccHHHHHHHHhhH
Confidence            56666667777763            2345689995  77764 6777777888877655443  589999999999998


Q ss_pred             hHHHHH
Q 030345          138 IVKYCL  143 (179)
Q Consensus       138 ~~~~~l  143 (179)
                      +.+.+.
T Consensus       158 ~~~~lf  163 (701)
T PRK15015        158 TAGVIA  163 (701)
T ss_pred             HHHHHH
Confidence            766553

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=84.05  E-value=25  Score=31.78  Aligned_cols=74  Identities=8%  Similarity=0.091  Sum_probs=42.7

Q ss_pred             hhhchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHH
Q 030345           66 SFVGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCL  143 (179)
Q Consensus        66 ~~lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l  143 (179)
                      ..++=|-+++.+ ++.||......-.++-.  ..+..-++..+.+..+-|++.++-.  .-+..+-.++.+|+.+++..
T Consensus        20 ~~i~ig~~IGsGif~~~g~~~~~~G~~~~i--~~~i~~v~~~~~a~~~aEl~s~~P~--~Gg~~~~~~~~~g~~~gf~~   94 (452)
T TIGR01773        20 TMLSIAGVIGAGLFVGSGSAIASAGPAALL--AYLLAGLLVVFIMRMLGEMAVANPD--TGSFSTYADDAIGRWAGFTI   94 (452)
T ss_pred             HHHHHhhhhhchHHHhhHHHHHhcCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHhCcHHHHHH
Confidence            345666666665 67777666543211111  2222333344556667777776653  23678888999999877654

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=82.63  E-value=12  Score=33.66  Aligned_cols=58  Identities=19%  Similarity=0.180  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHH
Q 030345           96 YELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIA  153 (179)
Q Consensus        96 Y~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~  153 (179)
                      ++-+.++++++++..++.-+.++.|..||.+-.-..|..||++-+++..+...+..++
T Consensus        29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~ig   86 (386)
T TIGR02358        29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVG   86 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence            5677889999999999999999999999999999999999987766544443333333

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=82.08  E-value=19  Score=33.66  Aligned_cols=100  Identities=9%  Similarity=-0.049  Sum_probs=60.9

Q ss_pred             hhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCC---------HHHHHHhHcCchHHHHHHHHH
Q 030345           77 AYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKH---------LSELCKAEYPIIVKYCLWLLA  147 (179)
Q Consensus        77 a~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~---------L~e~ir~~~gk~~~~~l~i~~  147 (179)
                      +-+|+||++--..|=+-=|-.-+..++++.++.+...+.-.-|+...++.         .+--+++-+++++.-.++.+.
T Consensus        31 ~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai~  110 (416)
T PF01235_consen   31 GTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAIF  110 (416)
T ss_pred             hccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHHH
Confidence            35777776554444444456666777788888888888888888876643         777888888765543333333


Q ss_pred             HHHHHHH--HHHHHHHHHHHHHHHhCCCCCC
Q 030345          148 EIAVIAA--DIPEGIFSIIFLNILLRYMHAP  176 (179)
Q Consensus       148 ~l~~i~t--~laeiiG~aiaL~lLfgip~~~  176 (179)
                      .+..+..  .+.+.--++.+++--|++|+.+
T Consensus       111 ~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~  141 (416)
T PF01235_consen  111 LIIAFGIGFNMVQANSIADALSSAFGIPPWI  141 (416)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhccccHHH
Confidence            2222222  2333334466677678888643

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>PRK10249 phenylalanine transporter; Provisional

Probab=80.81  E-value=30  Score=31.55  Aligned_cols=98  Identities=9%  Similarity=0.085  Sum_probs=52.5

Q ss_pred             hhhchhHhhhHh-hcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHH
Q 030345           66 SFVGPGFLVSLA-YLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLW  144 (179)
Q Consensus        66 ~~lGPG~lvaaa-~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~  144 (179)
                      ..++=|-+++.+ ++.||......-.++-.+|  +-.-++..+.+..+.|++.++=. +| +.....++.+|+.+++...
T Consensus        29 ~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~--li~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~~g  104 (458)
T PRK10249         29 QLIALGGAIGTGLFLGIGPAIQMAGPAVLLGY--GVAGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFLSG  104 (458)
T ss_pred             hhhhhhcccchhHHHHHHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHHHH
Confidence            346666677777 6788886654322222221  11223344555566677776654 45 7788889999997766543


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 030345          145 LLAEIAVIAADIPEGIFSIIFLN  167 (179)
Q Consensus       145 i~~~l~~i~t~laeiiG~aiaL~  167 (179)
                      ....+.......+|..+.+.-++
T Consensus       105 w~~~~~~~~~~~~~~~a~~~~~~  127 (458)
T PRK10249        105 WNYWVMFVLVGMAELTAAGIYMQ  127 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222333444444443333

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=80.24  E-value=14  Score=34.76  Aligned_cols=78  Identities=14%  Similarity=0.122  Sum_probs=54.4

Q ss_pred             HhhhHhhcCCCchhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhhhc---CCCHHHHHHhHcCchHHHHHHHHHH
Q 030345           72 FLVSLAYLDPGNLETDLQAGANHRYELLWVVLIGLIFALIIQSLAANLGVST---GKHLSELCKAEYPIIVKYCLWLLAE  148 (179)
Q Consensus        72 ~lvaaa~idPG~i~T~~~aGA~fGY~LLWvvlls~i~~~~lQ~~aaRlgivT---G~~L~e~ir~~~gk~~~~~l~i~~~  148 (179)
                      +.++-..+|.|=+.-=+++|...=+-++-+.+++.++++.--.+-.|.-...   |.++.+..++++||++..+.++...
T Consensus        26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf  105 (443)
T PRK13629         26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF  105 (443)
T ss_pred             HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence            3444457888888888888776555555566666666666655556665554   6799999999999998887765443


Q ss_pred             H
Q 030345          149 I  149 (179)
Q Consensus       149 l  149 (179)
                      +
T Consensus       106 f  106 (443)
T PRK13629        106 F  106 (443)
T ss_pred             H
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	95.83
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	95.78
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	95.77

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=95.83  E-value=0.11  Score=46.89  Aligned_cols=77  Identities=9%  Similarity=0.090  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CC
Q 030345           97 ELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEGIFSIIFLNILL----RY  172 (179)
Q Consensus        97 ~LLWvvlls~i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~i~t~laeiiG~aiaL~lLf----gi  172 (179)
                      +.++.+++++++..++-.+.+++|..+|.+.....|..||++.+++.-++..+..++...-+....+.+++.++    |+
T Consensus        60 ~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~  139 (501)
T 2jln_A           60 QVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF  139 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            34567778888888888899999999999999999999999887765555545555555555555555555543    77


Q ss_pred             C
Q 030345          173 M  173 (179)
Q Consensus       173 p  173 (179)
                      +
T Consensus       140 ~  140 (501)
T 2jln_A          140 T  140 (501)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=95.78  E-value=0.024  Score=52.14  Aligned_cols=99  Identities=13%  Similarity=-0.007  Sum_probs=60.2

Q ss_pred             HhhcCCCchhhhhhHHhhhhhhHHHHH---HHHH-HHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHHHHHHHHHHHHH
Q 030345           76 LAYLDPGNLETDLQAGANHRYELLWVV---LIGL-IFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAV  151 (179)
Q Consensus        76 aa~idPG~i~T~~~aGA~fGY~LLWvv---lls~-i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~~~l~i~~~l~~  151 (179)
                      +.+++..++......+.++|+...|..   .++. ++..++-...-|.+   -.++.|.+++|||++.+.+.-+...+..
T Consensus        62 at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~---~~T~~e~l~~Rfg~~~~~~~ai~~l~~~  138 (593)
T 2xq2_A           62 AANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKG---IYTIPEFVEKRFNKKLKTILAVFWISLY  138 (593)
T ss_dssp             GGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTT---CCSHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCCcHHHHHHHccCchHHHHHHHHHHHH
Confidence            446777777777778888887754332   2222 22222222223443   3689999999999887655433322222


Q ss_pred             HH-HHHHHHHHHHHHHHHHhCCCCCCC
Q 030345          152 IA-ADIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       152 i~-t~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      +. ....++.+.+..++.++|+|.+.+
T Consensus       139 ~~~~~~~~l~~~~~~l~~~~Gi~~~~~  165 (593)
T 2xq2_A          139 IFVNLTSVLYLGGLALETILGIPLMYS  165 (593)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCccHHHH
Confidence            22 233455677889999999986543

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=95.77  E-value=0.029  Score=50.94  Aligned_cols=107  Identities=13%  Similarity=0.032  Sum_probs=65.1

Q ss_pred             hchhHh---hhHhhcCCCchhhhhhHHhhhhhhHH---HHHHHHH-HHHHHHHHHHhHhhhhcCCCHHHHHHhHcCchHH
Q 030345           68 VGPGFL---VSLAYLDPGNLETDLQAGANHRYELL---WVVLIGL-IFALIIQSLAANLGVSTGKHLSELCKAEYPIIVK  140 (179)
Q Consensus        68 lGPG~l---vaaa~idPG~i~T~~~aGA~fGY~LL---Wvvlls~-i~~~~lQ~~aaRlgivTG~~L~e~ir~~~gk~~~  140 (179)
                      +||..+   +.+.++....+......+..+|+.-.   |...++. ++..++-...-|.+   -.|+.|.+++||+++.+
T Consensus        22 l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~---~~T~~e~l~~Rfg~~~~   98 (530)
T 3dh4_A           22 LPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKG---IYTIPEFVEKRFNKKLK   98 (530)
T ss_dssp             CCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTT---CCSHHHHHHHHTCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHcCcHHH
Confidence            555444   34567888888888888888898754   3322222 22222222333433   37999999999999876


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCCC
Q 030345          141 YCLWLLAEIAVIAA-DIPEGIFSIIFLNILLRYMHAPS  177 (179)
Q Consensus       141 ~~l~i~~~l~~i~t-~laeiiG~aiaL~lLfgip~~~~  177 (179)
                      .+.-+...+..+.. ..+...+.+..++.+||+|.+.+
T Consensus        99 ~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~  136 (530)
T 3dh4_A           99 TILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYS  136 (530)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            65433322222222 23445567888999999996544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00