Citrus Sinensis ID: 030360

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccccccccccccccccEEEEEEEEEEEcEEEEEEEcccccccccccccccEEEEEEEccccccHHHHHHHHHccccccccccccccccEEEcccccccEEEEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEccccccccEEEEEEEcccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccEEEEEccccccccccccccEEEEEEccccccccHHHHHHHHHHcccccccccccccccEEEcccccccEEEEEEEEEEEEEEEEccccccEEEEEEEEEEEEccccccccccEEEEEEEcccEEEc
Coil and Loop (DISEMBL)
meelvapipleeshklaldgkhkttaenvkrpapkaggcriegyvrvkkvpgnliisarsgahsfdtsemnMSHVISHlsfgrklspkvmSDVQRLipylggshdrlngrsfinhrevganVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVqsiyipaakfhfelspmqve
Flexible Loop (DISEMBL)
meelvapipleeshklaldgkhkttaenvkrpapkaggcriegYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLggshdrlngrSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE
Low Complexity Region (SEG)
MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE
Disordered region (IsUnstruct)
************************************GGCRIEGYVRVKKVPGNLIISARSG***********SHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFE*******
Disordered Region (DISOPRED)
*****APIPLEESHK**********************GCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEY***********IPAAKFHFELSPMQVE
Disordered Region (DISEMBL)
MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE
Disordered Region (DISPRO)
***************************NVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q9LJU2	483	Protein disulfide-isomera	yes	no	0.983	0.364	0.696	2e-70
Q9T042	480	Protein disulfide-isomera	no	no	0.949	0.354	0.651	1e-61
Q69SA9	485	Protein disulfide isomera	yes	no	0.988	0.364	0.620	5e-60
Q969X5	290	Endoplasmic reticulum-Gol	yes	no	0.793	0.489	0.307	3e-09
Q9DC16	290	Endoplasmic reticulum-Gol	yes	no	0.793	0.489	0.307	5e-09
Q4V8Y6	290	Endoplasmic reticulum-Gol	yes	no	0.793	0.489	0.307	7e-09
Q6NS19	290	Endoplasmic reticulum-Gol	N/A	no	0.787	0.486	0.281	4e-07
Q6NVS2	384	Endoplasmic reticulum-Gol	no	no	0.726	0.338	0.256	0.0007

>sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1

 Score =  264 bits (674), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/178 (69%), Positives = 153/178 (85%), Gaps = 2/178 (1%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           +E LVAPI   E+HK+ALDGK   T +++K+  P  GGCR+EGYVRVKKVPGNL+ISA S
Sbjct: 258 VEGLVAPIH-PETHKVALDGKSNDTVKHLKK-GPVTGGCRVEGYVRVKKVPGNLVISAHS 315

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
           GAHSFD+S+MNMSHV+SH SFGR +SP++++D++RL+PYLG SHDRL+G++FIN  E GA
Sbjct: 316 GAHSFDSSQMNMSHVVSHFSFGRMISPRLLTDMKRLLPYLGLSHDRLDGKAFINQHEFGA 375

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVTIEHYLQ VKTEVITRR  +EHSL+EEYEYTAHSS+ Q+ Y+P AKFHFELSPMQ+
Sbjct: 376 NVTIEHYLQTVKTEVITRRSGQEHSLIEEYEYTAHSSVAQTYYLPVAKFHFELSPMQI 433

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4 PE=2 SV=1

 Score =  235 bits (599), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 114/175 (65%), Positives = 141/175 (80%), Gaps = 5/175 (2%)

Query: 4   LVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAH 63
           LV PI LE  H LAL+ K   ++  +K+ AP  GGCR+EGY+RVKKVPGNL++SARSG+H
Sbjct: 261 LVEPIHLEP-HNLALEDKSDNSSRTLKK-APSTGGCRVEGYMRVKKVPGNLMVSARSGSH 318

Query: 64  SFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVT 123
           SFD+S+MNMSHV++HLSFGR++ P+  S+ +RL PYLG SHDRL+GRSFIN R++G NVT
Sbjct: 319 SFDSSQMNMSHVVNHLSFGRRIMPQKFSEFKRLSPYLGLSHDRLDGRSFINQRDLGPNVT 378

Query: 124 IEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           IEHYLQIVKTEV+    S   +L+E YEYTAHSS+  S Y+P AKFHFELSPMQV
Sbjct: 379 IEHYLQIVKTEVVK---SNGQALVEAYEYTAHSSVAHSYYLPVAKFHFELSPMQV 430

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica GN=PDIL5-4 PE=2 SV=1

 Score =  230 bits (586), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 142/179 (79%), Gaps = 2/179 (1%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           ME  VA IP +++H LAL+ K   T +  KRPAP   GCRIEG+VRVKKVPG+++ISARS
Sbjct: 258 METYVANIP-KDAHVLALEDKSNKTVDPAKRPAPLTSGCRIEGFVRVKKVPGSVVISARS 316

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFI-NHREVG 119
           G+HSFD S++N+SH ++  SFG++LS K+ ++++RL PY+GG HDRL G+S+I  H +V 
Sbjct: 317 GSHSFDPSQINVSHYVTQFSFGKRLSAKMFNELKRLTPYVGGHHDRLAGQSYIVKHGDVN 376

Query: 120 ANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           ANVTIEHYLQIVKTE++T R S+E  L+EEYEYTAHSSLV S Y+P  KFHFE SPMQV
Sbjct: 377 ANVTIEHYLQIVKTELVTLRSSKELKLVEEYEYTAHSSLVHSFYVPVVKFHFEPSPMQV 435

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 24/166 (14%)

Query: 20  GKHKT--TAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
           G+H+      ++K P     GCR EG   + KVPGN  +S  S          +M+HVI 
Sbjct: 94  GRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSATAQ--PQNPDMTHVIH 151

Query: 78  HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKT---- 133
            LSFG  L    + ++      LGG+ DRL      +H         ++ L+IV T    
Sbjct: 152 KLSFGDTLQ---VQNIHGAFNALGGA-DRLTSNPLASH---------DYILKIVPTVYED 198

Query: 134 EVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
           +   +RYS ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct: 199 KSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 241

Possible role in transport between endoplasmic reticulum and Golgi.

Homo sapiens (taxid: 9606)

>sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Mus musculus GN=Ergic1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 24/166 (14%)

Query: 20  GKHKT--TAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
           G+H+      ++K P     GCR EG   + KVPGN  +S  S          +M+H I 
Sbjct: 94  GRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSATAQ--PQNPDMTHTIH 151

Query: 78  HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKT---- 133
            LSFG  L    + +V      LGG+ DRL      +H         ++ L+IV T    
Sbjct: 152 KLSFGDTLQ---VQNVHGAFNALGGA-DRLTSNPLASH---------DYILKIVPTVYED 198

Query: 134 EVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
           +   +RYS ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct: 199 KSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 241

Possible role in transport between endoplasmic reticulum and Golgi.

Mus musculus (taxid: 10090)

>sp|Q4V8Y6|ERGI1_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Danio rerio GN=ergic1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 24/166 (14%)

Query: 20  GKHKT--TAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
           G+H+      ++K P     GCR EG   + KVPGN  +S  S          +M+H+I 
Sbjct: 94  GRHEVGHIENSMKVPLNNGHGCRFEGEFSINKVPGNFHVSTHSATAQ--PQSPDMTHIIH 151

Query: 78  HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEV-- 135
            L+FG KL    +  VQ     LGG+ DRL   +  +H         ++ L+IV T    
Sbjct: 152 KLAFGAKLQ---VQHVQGAFNALGGA-DRLQSNALASH---------DYILKIVPTVYEE 198

Query: 136 --ITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
               +R+S ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct: 199 LGGKQRFSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 241

Possible role in transport between endoplasmic reticulum and Golgi.

Danio rerio (taxid: 7955)

>sp|Q6NS19|ERGI1_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Xenopus laevis GN=ergic1 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 26/167 (15%)

Query: 20  GKHKT--TAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
           G+H+      ++K P   A GCR EG   + KVPGN  +S  S       +  +M H+I 
Sbjct: 94  GRHEVGHIDNSMKIPINNAYGCRFEGLFSINKVPGNFHVSTHSAIAQ--PANPDMRHIIH 151

Query: 78  HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKT--EV 135
            LSFG  L    + ++      LGG+ D+L  ++  +H         ++ L+IV T  E 
Sbjct: 152 KLSFGNTLQ---VDNIHGAFNALGGA-DKLASKALESH---------DYVLKIVPTVYED 198

Query: 136 IT--RRYSREHSLLEE-YEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
           +   +++S ++++  + Y   +H+  V    +PA  F ++LSP+ V+
Sbjct: 199 LNGKQQFSYQYTVANKAYVAYSHTGRV----VPAIWFRYDLSPITVK 241

Possible role in transport between endoplasmic reticulum and Golgi.

Xenopus laevis (taxid: 8355)

>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 34/164 (20%)

Query: 30  KRPAPKAGGCRIEGYVRVKKVPGNLIIS-----ARSGAH-----SFDTSEMNMSHVISHL 79
           K    K  GC++ G++ V KV GN   +      +S  H     SF    +NM+H I HL
Sbjct: 191 KMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHEIRHL 250

Query: 80  SFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRR 139
           SFGR        D   L+  L GS          +   + +++  +++++IV T  +  +
Sbjct: 251 SFGR--------DYPGLVNPLDGS----------SVAAMQSSMMFQYFVKIVPTVYV--K 290

Query: 140 YSREHSLLEEYEYTAHSSLVQSIY----IPAAKFHFELSPMQVE 179
              E     ++  T H  +   +     +P     +ELSPM V+
Sbjct: 291 VDGEVLRTNQFSVTRHEKMTNGLIGDQGLPGVFVLYELSPMMVK 334

Possible role in transport between endoplasmic reticulum and Golgi.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
255563725	478	thioredoxin domain-containing protein, p	0.955	0.357	0.780	4e-76
224126339	484	predicted protein [Populus trichocarpa]	0.988	0.365	0.758	8e-75
225461068	482	PREDICTED: protein disulfide isomerase-l	0.972	0.360	0.754	9e-75
224117462	484	predicted protein [Populus trichocarpa]	0.988	0.365	0.741	4e-73
449468488	481	PREDICTED: protein disulfide-isomerase 5	0.972	0.361	0.730	9e-71
449489976	224	PREDICTED: protein disulfide-isomerase 5	0.972	0.776	0.730	1e-70
297830752	483	hypothetical protein ARALYDRAFT_479582 [	0.983	0.364	0.713	4e-70
356543934	480	PREDICTED: protein disulfide-isomerase 5	0.966	0.360	0.747	5e-70
356549839	480	PREDICTED: protein disulfide-isomerase 5	0.966	0.360	0.730	2e-69
18402672	483	protein PDI-like 5-3 [Arabidopsis thalia	0.983	0.364	0.696	1e-68

>gi|255563725|ref|XP_002522864.1| thioredoxin domain-containing protein, putative [Ricinus communis] gi|223537948|gb|EEF39562.1| thioredoxin domain-containing protein, putative [Ricinus communis]

 Score =  288 bits (738), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 139/178 (78%), Positives = 154/178 (86%), Gaps = 7/178 (3%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           ME LVAPI LE         K +   ++ KRPAP  GGCRIEGYVRVKKVPGNLIISARS
Sbjct: 258 MESLVAPIQLESL-------KSENATQSTKRPAPLTGGCRIEGYVRVKKVPGNLIISARS 310

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
           GAHSFD S+MNMSHVISHLSFG K+SPKVM++ +RL+PY+GGSHD+LNGRSF+NHR+V A
Sbjct: 311 GAHSFDPSQMNMSHVISHLSFGLKVSPKVMNEAKRLVPYIGGSHDKLNGRSFVNHRDVDA 370

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVTIEHYLQIVKTEV+TRR SREH LLEEYEYTAHSSLVQS+YIPAAKFHFELSPMQV
Sbjct: 371 NVTIEHYLQIVKTEVVTRRSSREHKLLEEYEYTAHSSLVQSVYIPAAKFHFELSPMQV 428

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126339|ref|XP_002319814.1| predicted protein [Populus trichocarpa] gi|222858190|gb|EEE95737.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (727), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 158/178 (88%), Gaps = 1/178 (0%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           ME LVAPI +E S + AL+ K +   E+VKRPAP AGGCRIEGYVRVKKVPGNL+ISARS
Sbjct: 258 MEGLVAPIAME-SQRHALEHKPENATEHVKRPAPSAGGCRIEGYVRVKKVPGNLVISARS 316

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
           GAHSFD+++MN+SHVISH SFG K+ P+VMSDV+RLIP++G SHD+LNGRSFINHR+VGA
Sbjct: 317 GAHSFDSAQMNLSHVISHFSFGMKVLPRVMSDVKRLIPHIGRSHDKLNGRSFINHRDVGA 376

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVTIEHYLQ+VKTEV+TRR S EH L+EEYEYTAHSSL Q++Y+P AKFHFELSPMQV
Sbjct: 377 NVTIEHYLQVVKTEVVTRRSSAEHKLIEEYEYTAHSSLAQTVYMPTAKFHFELSPMQV 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461068|ref|XP_002281649.1| PREDICTED: protein disulfide isomerase-like 5-4 [Vitis vinifera] gi|297735969|emb|CBI23943.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (727), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 135/179 (75%), Positives = 162/179 (90%), Gaps = 5/179 (2%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           ME LVAPIPLE S +LAL+ K  +TA+++KRPAP+ GGCRIEG+VRVKKVPGNL+ISARS
Sbjct: 258 METLVAPIPLE-SQRLALENKSDSTADHIKRPAPRTGGCRIEGFVRVKKVPGNLVISARS 316

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINH-REVG 119
           G+HSFD S+MNMSHVISHLSFGRK++P+VMSD++R++PY+GGSHDRLNGRS+I+H  +  
Sbjct: 317 GSHSFDPSQMNMSHVISHLSFGRKIAPRVMSDMKRVLPYIGGSHDRLNGRSYISHPSDSN 376

Query: 120 ANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           ANVTIEHYLQ+VKTEVIT   +R+H L+EEYEYTAHSSLVQS+YIP AKFHFELSPMQV
Sbjct: 377 ANVTIEHYLQVVKTEVIT---TRDHKLVEEYEYTAHSSLVQSLYIPVAKFHFELSPMQV 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117462|ref|XP_002317580.1| predicted protein [Populus trichocarpa] gi|222860645|gb|EEE98192.1| predicted protein [Populus trichocarpa]

 Score =  279 bits (713), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/178 (74%), Positives = 155/178 (87%), Gaps = 1/178 (0%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           ME LVAPI +E S + AL+ K +   ++VKRPAP AGGCRIEGYVRVKKVPGNL+ISA S
Sbjct: 258 MEALVAPIAME-SQRQALEHKPENATQHVKRPAPSAGGCRIEGYVRVKKVPGNLMISALS 316

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
           GAHSFD+ +MN+SHVISH SFG K+ P+VMSDV+RL+PY+G SHD+LNGRSFINHR+VGA
Sbjct: 317 GAHSFDSKQMNLSHVISHFSFGMKVLPRVMSDVKRLLPYIGRSHDKLNGRSFINHRDVGA 376

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVTIEHYLQ+VKTEV+TRR S E  L+EEYEYTAHSSL Q++Y+P AKFHFELSPMQV
Sbjct: 377 NVTIEHYLQVVKTEVVTRRSSSERKLIEEYEYTAHSSLSQTVYMPTAKFHFELSPMQV 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468488|ref|XP_004151953.1| PREDICTED: protein disulfide-isomerase 5-4-like [Cucumis sativus]

 Score =  271 bits (692), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 130/178 (73%), Positives = 150/178 (84%), Gaps = 4/178 (2%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           ME+L+AP+P   S KLAL+ K      NVKRPAP AGGCRIEGYVRVKKVPG+L+I+ARS
Sbjct: 258 MEDLIAPLP-AGSQKLALEDKSNNETGNVKRPAPSAGGCRIEGYVRVKKVPGSLVIAARS 316

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
            +HSFD S+MNMSH+ISHLSFGRK+SPK  SD ++LIPY+G SHDRLNGRSFIN R++GA
Sbjct: 317 ESHSFDASQMNMSHIISHLSFGRKISPKAFSDAKQLIPYIGISHDRLNGRSFINQRDLGA 376

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVTIEHYLQIVKTEV+TRR  +   LLEEYEYTAHSS+ QS+YIP  KFHF LSPMQV
Sbjct: 377 NVTIEHYLQIVKTEVLTRRSGK---LLEEYEYTAHSSVSQSLYIPVVKFHFVLSPMQV 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489976|ref|XP_004158474.1| PREDICTED: protein disulfide-isomerase 5-3-like [Cucumis sativus]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/178 (73%), Positives = 150/178 (84%), Gaps = 4/178 (2%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           ME+L+AP+P   S KLAL+ K      NVKRPAP AGGCRIEGYVRVKKVPG+L+I+ARS
Sbjct: 1   MEDLIAPLP-AGSQKLALEDKSNNETGNVKRPAPSAGGCRIEGYVRVKKVPGSLVIAARS 59

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
            +HSFD S+MNMSH+ISHLSFGRK+SPK  SD ++LIPY+G SHDRLNGRSFIN R++GA
Sbjct: 60  ESHSFDASQMNMSHIISHLSFGRKISPKAFSDAKQLIPYIGISHDRLNGRSFINQRDLGA 119

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVTIEHYLQIVKTEV+TRR  +   LLEEYEYTAHSS+ QS+YIP  KFHF LSPMQV
Sbjct: 120 NVTIEHYLQIVKTEVLTRRSGK---LLEEYEYTAHSSVSQSLYIPVVKFHFVLSPMQV 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830752|ref|XP_002883258.1| hypothetical protein ARALYDRAFT_479582 [Arabidopsis lyrata subsp. lyrata] gi|297329098|gb|EFH59517.1| hypothetical protein ARALYDRAFT_479582 [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/178 (71%), Positives = 155/178 (87%), Gaps = 2/178 (1%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           +E LVAPI   E+HK+A DGK   T +N+K+ AP  GGCR+EGYVRVKKVPGNL+ISA S
Sbjct: 258 VEGLVAPIH-PETHKVASDGKSNDTVKNLKK-APVTGGCRVEGYVRVKKVPGNLVISAHS 315

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
           GAHSFD+S+MNMSHV+SHLSFGR +SP++++D++RL+PYLG SHDRL+G++FIN  E GA
Sbjct: 316 GAHSFDSSQMNMSHVVSHLSFGRMISPRLLTDMKRLLPYLGLSHDRLDGKAFINQHEFGA 375

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVTIEHYLQIVKTEVITRR  +EHSL+EEYEYTAHSS+ Q+ Y+P AKFHFELSPMQ+
Sbjct: 376 NVTIEHYLQIVKTEVITRRSGQEHSLIEEYEYTAHSSVAQTYYLPVAKFHFELSPMQI 433

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543934|ref|XP_003540413.1| PREDICTED: protein disulfide-isomerase 5-4-like [Glycine max]

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/178 (74%), Positives = 150/178 (84%), Gaps = 5/178 (2%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           ME LVA +P  ES KL L+ K    A N KRPAP  GGCRI+GYVRVKKVPGNLIISARS
Sbjct: 258 MENLVASLP-SESQKLPLEDK-SNVATNTKRPAPSTGGCRIDGYVRVKKVPGNLIISARS 315

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
            AHSFD S+MNMSHVI+HLSFGRK+S +VMSDV+RLIPY+G SHDRLNGRSFIN  ++GA
Sbjct: 316 NAHSFDASQMNMSHVINHLSFGRKVSLRVMSDVKRLIPYVGSSHDRLNGRSFINTHDLGA 375

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVTIEHYLQIVKTEVITR   +E+ L+EEYEYTAHSS+ QS++IP AKFH ELSPMQV
Sbjct: 376 NVTIEHYLQIVKTEVITR---KEYKLVEEYEYTAHSSVAQSLHIPVAKFHLELSPMQV 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549839|ref|XP_003543298.1| PREDICTED: protein disulfide-isomerase 5-4-like [Glycine max]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/178 (73%), Positives = 151/178 (84%), Gaps = 5/178 (2%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           ME LVA +P  ES KL L+ K    A+N +RPAP  GGCRI+GYVRVKKVPGNLI SARS
Sbjct: 258 MENLVASLP-SESQKLPLEDK-SDVAKNTERPAPSTGGCRIDGYVRVKKVPGNLIFSARS 315

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
            AHSFD S+MNMSHVI+HLSFGRK+SP+VMSDV+RLIPY+G SHDRLNGRSFIN  ++GA
Sbjct: 316 NAHSFDASQMNMSHVINHLSFGRKVSPRVMSDVKRLIPYVGSSHDRLNGRSFINTHDLGA 375

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVT+EHYLQIVKTEVITR   +++ L+EEYEYTAHSS+ QS++IP AKFH ELSPMQV
Sbjct: 376 NVTMEHYLQIVKTEVITR---KDYKLVEEYEYTAHSSVAQSLHIPVAKFHLELSPMQV 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402672|ref|NP_566664.1| protein PDI-like 5-3 [Arabidopsis thaliana] gi|75273652|sp|Q9LJU2.1|PDI53_ARATH RecName: Full=Protein disulfide-isomerase 5-3; Short=AtPDIL5-3; AltName: Full=Protein disulfide-isomerase 12; Short=PDI12; AltName: Full=Protein disulfide-isomerase 8-1; Short=AtPDIL8-1; Flags: Precursor gi|11994143|dbj|BAB01164.1| unnamed protein product [Arabidopsis thaliana] gi|15215847|gb|AAK91468.1| AT3g20560/K10D20_9 [Arabidopsis thaliana] gi|332642877|gb|AEE76398.1| protein PDI-like 5-3 [Arabidopsis thaliana]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/178 (69%), Positives = 153/178 (85%), Gaps = 2/178 (1%)

Query: 1   MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
           +E LVAPI   E+HK+ALDGK   T +++K+  P  GGCR+EGYVRVKKVPGNL+ISA S
Sbjct: 258 VEGLVAPIH-PETHKVALDGKSNDTVKHLKK-GPVTGGCRVEGYVRVKKVPGNLVISAHS 315

Query: 61  GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
           GAHSFD+S+MNMSHV+SH SFGR +SP++++D++RL+PYLG SHDRL+G++FIN  E GA
Sbjct: 316 GAHSFDSSQMNMSHVVSHFSFGRMISPRLLTDMKRLLPYLGLSHDRLDGKAFINQHEFGA 375

Query: 121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
           NVTIEHYLQ VKTEVITRR  +EHSL+EEYEYTAHSS+ Q+ Y+P AKFHFELSPMQ+
Sbjct: 376 NVTIEHYLQTVKTEVITRRSGQEHSLIEEYEYTAHSSVAQTYYLPVAKFHFELSPMQI 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2085750	483	PDIL5-3 "PDI-like 5-3" [Arabid	0.983	0.364	0.696	1.5e-65
TAIR|locus:2036371	484	AT1G50950 [Arabidopsis thalian	0.983	0.363	0.668	7.9e-62
TAIR|locus:2136491	532	PDIL5-4 "PDI-like 5-4" [Arabid	0.949	0.319	0.651	2.2e-57
ZFIN|ZDB-GENE-050913-75	290	zgc:114085 "zgc:114085" [Danio	0.793	0.489	0.325	1.1e-11
UNIPROTKB|E2QTE3	290	ERGIC1 "Uncharacterized protei	0.793	0.489	0.319	3e-11
UNIPROTKB|E1C2I3	290	ERGIC1 "Uncharacterized protei	0.793	0.489	0.313	6.6e-11
UNIPROTKB|Q969X5	290	ERGIC1 "Endoplasmic reticulum-	0.793	0.489	0.313	8.6e-11
RGD|1585015	289	Ergic1 "endoplasmic reticulum-	0.793	0.491	0.313	1.9e-10
MGI|MGI:1914708	290	Ergic1 "endoplasmic reticulum-	0.793	0.489	0.313	1.9e-10
UNIPROTKB|F1SJY1	290	ERGIC1 "Uncharacterized protei	0.793	0.489	0.313	3.2e-10

TAIR|locus:2085750 PDIL5-3 "PDI-like 5-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 124/178 (69%), Positives = 153/178 (85%)

Query:     1 MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
             +E LVAPI   E+HK+ALDGK   T +++K+  P  GGCR+EGYVRVKKVPGNL+ISA S
Sbjct:   258 VEGLVAPIH-PETHKVALDGKSNDTVKHLKK-GPVTGGCRVEGYVRVKKVPGNLVISAHS 315

Query:    61 GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
             GAHSFD+S+MNMSHV+SH SFGR +SP++++D++RL+PYLG SHDRL+G++FIN  E GA
Sbjct:   316 GAHSFDSSQMNMSHVVSHFSFGRMISPRLLTDMKRLLPYLGLSHDRLDGKAFINQHEFGA 375

Query:   121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
             NVTIEHYLQ VKTEVITRR  +EHSL+EEYEYTAHSS+ Q+ Y+P AKFHFELSPMQ+
Sbjct:   376 NVTIEHYLQTVKTEVITRRSGQEHSLIEEYEYTAHSSVAQTYYLPVAKFHFELSPMQI 433

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2036371 AT1G50950 [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 119/178 (66%), Positives = 148/178 (83%)

Query:     1 MEELVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARS 60
             +EEL+ PI  +E HKLALDGK    A   K+ AP +GGCRIEGYVR KKVPG L+ISA S
Sbjct:   259 VEELLKPIK-KEDHKLALDGKSDNAASTFKK-APVSGGCRIEGYVRAKKVPGELVISAHS 316

Query:    61 GAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGA 120
             GAHSFD S+MNMSH+++HL+FG  +S ++ +D++RL+PYLG S+DRLNG+SFIN R++ A
Sbjct:   317 GAHSFDASQMNMSHIVTHLTFGTMVSERLWTDMKRLLPYLGQSYDRLNGKSFINERQLDA 376

Query:   121 NVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
             NVTIEHYLQI+KTEVI+RR  +EHSL+EEYEYTAHSS+ +S + P AKFHFELSPMQV
Sbjct:   377 NVTIEHYLQIIKTEVISRRSGQEHSLIEEYEYTAHSSVARSYHYPEAKFHFELSPMQV 434

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2136491 PDIL5-4 "PDI-like 5-4" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 114/175 (65%), Positives = 141/175 (80%)

Query:     4 LVAPIPLEESHKLALDGKHKTTAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAH 63
             LV PI LE  H LAL+ K   ++  +K+ AP  GGCR+EGY+RVKKVPGNL++SARSG+H
Sbjct:   313 LVEPIHLEP-HNLALEDKSDNSSRTLKK-APSTGGCRVEGYMRVKKVPGNLMVSARSGSH 370

Query:    64 SFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVT 123
             SFD+S+MNMSHV++HLSFGR++ P+  S+ +RL PYLG SHDRL+GRSFIN R++G NVT
Sbjct:   371 SFDSSQMNMSHVVNHLSFGRRIMPQKFSEFKRLSPYLGLSHDRLDGRSFINQRDLGPNVT 430

Query:   124 IEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQV 178
             IEHYLQIVKTEV+    S   +L+E YEYTAHSS+  S Y+P AKFHFELSPMQV
Sbjct:   431 IEHYLQIVKTEVVK---SNGQALVEAYEYTAHSSVAHSYYLPVAKFHFELSPMQV 482

GO:0005634 "nucleus" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

ZFIN|ZDB-GENE-050913-75 zgc:114085 "zgc:114085" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 54/166 (32%), Positives = 85/166 (51%)

Query:    20 GKHKTT-AEN-VKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
             G+H+    EN +K P     GCR EG   + KVPGN  +S  S   +      +M+H+I 
Sbjct:    94 GRHEVGHIENSMKVPLNNGHGCRFEGEFSINKVPGNFHVSTHSA--TAQPQSPDMTHIIH 151

Query:    78 HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKT--EV 135
              L+FG KL    +  VQ     LGG+ DRL   +  +H         ++ L+IV T  E 
Sbjct:   152 KLAFGAKLQ---VQHVQGAFNALGGA-DRLQSNALASH---------DYILKIVPTVYEE 198

Query:   136 I--TRRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
             +   +R+S ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct:   199 LGGKQRFSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 241

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

UNIPROTKB|E2QTE3 ERGIC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 158 (60.7 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 53/166 (31%), Positives = 81/166 (48%)

Query:    20 GKHKTT-AENVKR-PAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
             G+H+    +N  R P     GCR EG+  + KVPGN  +S  S   +      +M+HVI 
Sbjct:    94 GRHEVGHIDNSMRIPVNNGAGCRFEGHFSINKVPGNFHVSTHSA--TAQPQNPDMTHVIH 151

Query:    78 HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVIT 137
              LSFG  L    + +V      LGG+ DRL      +H         ++ L+IV T    
Sbjct:   152 KLSFGDTLQ---VQNVHGAFNALGGA-DRLTSNPLASH---------DYILKIVPTVYED 198

Query:   138 R----RYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
             +    RYS ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct:   199 KSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 241

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

UNIPROTKB|E1C2I3 ERGIC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 6.6e-11, P = 6.6e-11
 Identities = 52/166 (31%), Positives = 86/166 (51%)

Query:    20 GKHKTT-AEN-VKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
             G+H+    +N +K P     GCR EG+  + KVPGN  +S  S   +      +M+H+I 
Sbjct:    94 GRHEVGHIDNSMKIPLNNGDGCRFEGHFSINKVPGNFHVSTHSA--TAQPQNPDMTHIIH 151

Query:    78 HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKT--EV 135
              LSFG KL    + +V      L G+ D+L+     +H         ++ L+IV T  E 
Sbjct:   152 KLSFGDKLQ---VQNVHGAFNALEGA-DKLSSNPLASH---------DYILKIVPTVYED 198

Query:   136 IT--RRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
             ++  +RYS ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct:   199 MSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 241

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q969X5 ERGIC1 "Endoplasmic reticulum-Golgi intermediate compartment protein 1" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 8.6e-11, P = 8.6e-11
 Identities = 52/166 (31%), Positives = 81/166 (48%)

Query:    20 GKHKTT-AEN-VKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
             G+H+    +N +K P     GCR EG   + KVPGN  +S  S   +      +M+HVI 
Sbjct:    94 GRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSA--TAQPQNPDMTHVIH 151

Query:    78 HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVIT 137
              LSFG  L    + ++      LGG+ DRL      +H         ++ L+IV T    
Sbjct:   152 KLSFGDTLQ---VQNIHGAFNALGGA-DRLTSNPLASH---------DYILKIVPTVYED 198

Query:   138 R----RYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
             +    RYS ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct:   199 KSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

RGD|1585015 Ergic1 "endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 52/166 (31%), Positives = 81/166 (48%)

Query:    20 GKHKTT-AEN-VKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
             G+H+    +N +K P     GCR EG   + KVPGN  +S  S   +      +M+H+I 
Sbjct:    93 GRHEVGHIDNSMKIPLNNGVGCRFEGQFSINKVPGNFHVSTHSA--TAQPQNPDMTHIIH 150

Query:    78 HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVIT 137
              LSFG  L    + +V      LGG+ DRL      +H         ++ L+IV T    
Sbjct:   151 KLSFGDTLQ---VQNVHGAFNALGGA-DRLTSNPLASH---------DYILKIVPTVYED 197

Query:   138 R----RYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
             +    RYS ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct:   198 KSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 240

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA;ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA;ISO

MGI|MGI:1914708 Ergic1 "endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1" [Mus musculus (taxid:10090)]

 Score = 151 (58.2 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 52/166 (31%), Positives = 80/166 (48%)

Query:    20 GKHKTT-AEN-VKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
             G+H+    +N +K P     GCR EG   + KVPGN  +S  S   +      +M+H I 
Sbjct:    94 GRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSA--TAQPQNPDMTHTIH 151

Query:    78 HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVIT 137
              LSFG  L    + +V      LGG+ DRL      +H         ++ L+IV T    
Sbjct:   152 KLSFGDTLQ---VQNVHGAFNALGGA-DRLTSNPLASH---------DYILKIVPTVYED 198

Query:   138 R----RYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
             +    RYS ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct:   199 KSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 241

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1SJY1 ERGIC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 52/166 (31%), Positives = 81/166 (48%)

Query:    20 GKHKTT-AEN-VKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVIS 77
             G+H+    +N +K P     GCR EG   + KVPGN  +S  S   +      +M+HVI 
Sbjct:    94 GRHEVGHIDNSMKIPLNDGVGCRFEGQFSINKVPGNFHVSTHSA--TAQPPNPDMTHVIH 151

Query:    78 HLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVIT 137
              LSFG  L    + ++      LGG+ DRL      +H         ++ L+IV T    
Sbjct:   152 KLSFGDTLQ---VQNIHGAFNALGGA-DRLTSNPLASH---------DYILKIVPTVYED 198

Query:   138 R----RYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVE 179
             +    RYS ++++  + EY A+S   +   IPA  F ++LSP+ V+
Sbjct:   199 KSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVK 241

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam07970	222	pfam07970, COPIIcoated_ERV, Endoplasmic reticulum	2e-16

>gnl|CDD|219673 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 42/160 (26%)

Query: 38  GCRIEGYVRVKKVPGNLIISAR-----SGAHSFDTS-----EMNMSHVISHLSFGRKLSP 87
           GCR++G + V +V GN  I+        G H  D S     ++N SH I+HLSFG +   
Sbjct: 55  GCRVKGTLEVNRVAGNFHIAPGRSFQEKGGHVHDLSLFTDEKLNFSHTINHLSFGEE--- 111

Query: 88  KVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLL 147
                      + GG  + L+G +     + G      ++L++V T     RY   + L+
Sbjct: 112 -----------FPGGVTNPLDGTTKFVQTDKG-YHMYSYFLKVVPT-----RYESLNGLI 154

Query: 148 EE-YEYTAHSSLVQSIYIPAAK--------FHFELSPMQV 178
            E  +Y+  S       +            F+++ SP++V
Sbjct: 155 VETNQYSVTSH---DRPVTGGSRGGVPGVFFNYDFSPIKV 191

This family is conserved from plants and fungi to humans. Erv46 works in close conjunction with Erv41 and together they form a complex which cycles between the endoplasmic reticulum and Golgi complex. Erv46-41 interacts strongly with the endoplasmic reticulum glucosidase II. Mammalian glucosidase II comprises a catalytic alpha-subunit and a 58 kDa beta subunit, which is required for ER localisation. All proteins identified biochemically as Erv41p-Erv46p interactors are localised to the early secretory pathway and are involved in protein maturation and processing in the ER and/or sorting into COPII vesicles for transport to the Golgi. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PF07970	222	COPIIcoated_ERV: Endoplasmic reticulum vesicle tra	100.0
KOG2667	379	consensus COPII vesicle protein [Intracellular tra	100.0

>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins

Probab=100.00  E-value=3.3e-40  Score=272.81  Aligned_cols=131  Identities=34%  Similarity=0.573  Sum_probs=107.2

Q ss_pred             ccccCCCCCCceEEEEEEEeeeceEEEEeeCC-----CCC--ccC---CC-CCcccEEEEEeeeccCCCcchhhhhhhhc
Q 030360           29 VKRPAPKAGGCRIEGYVRVKKVPGNLIISARS-----GAH--SFD---TS-EMNMSHVISHLSFGRKLSPKVMSDVQRLI   97 (179)
Q Consensus        29 ~~~~~~~~eGCrI~G~l~VnKV~GnfhIs~~s-----~~h--~~~---~~-~~N~SH~I~~LsFG~~~~~~~~~~~~~~~   97 (179)
                      ++.....+|||||+|++.||||||||||+++.     .+|  ++.   .. .+||||+|||||||++++           
T Consensus        46 ~~~~~~~~egCri~G~l~VnkV~Gnfhi~~g~~~~~~~~h~hd~~~~~~~~~~N~SH~I~~lsFG~~~~-----------  114 (222)
T PF07970_consen   46 IKEQVNEGEGCRIYGSLEVNKVPGNFHIAPGRSFQQDGGHIHDLSPFDDEPKFNFSHTINHLSFGEEIP-----------  114 (222)
T ss_pred             hhhhccCCCCCEEEEEEEEEEEEEEEEEEecchhccCCcceeehhhhccccCCCCCeEEEEEEeccccc-----------
Confidence            34456678999999999999999999999975     223  332   22 799999999999999987           


Q ss_pred             ccCCCCcCCCCCceeeeeeccCCceeEEEEEEEEEEeEEecCCccccceeeeeee--eEEeecCC---CCCCceEEEEEe
Q 030360           98 PYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEY--TAHSSLVQ---SIYIPAAKFHFE  172 (179)
Q Consensus        98 ~~~~~~~nPLdg~~~~~~~~~~~~~~~~YflkVVPT~y~~~~~~~~~~~~~tyQY--T~~~~~~~---~~~~PgI~F~YD  172 (179)
                          +..|||||+..+. ..+....+|+||||||||+|...++..    +.||||  |++.+...   ..++|||||+||
T Consensus       115 ----~~~~PLdg~~~~~-~~~~~~~~~~YflkvVPT~y~~~~~~~----~~t~qYsvt~~~~~~~~~~~~~~PGI~F~Yd  185 (222)
T PF07970_consen  115 ----GIVNPLDGTQKIV-QTDNGNYMYQYFLKVVPTTYEDLDGFS----IETYQYSVTEHSRPLNGGSSGGLPGIFFKYD  185 (222)
T ss_pred             ----cccccccCccccc-cCCCCceeEEEEEEEeeeeeEeccccc----cccccccceeeeeeccCCCCCCCceEEEEEe
Confidence                6789999999842 134568999999999999999988754    689999  56666553   268999999999


Q ss_pred             CcceeEC
Q 030360          173 LSPMQVE  179 (179)
Q Consensus       173 ~SPi~V~  179 (179)
                      ||||+|+
T Consensus       186 ~SPi~v~  192 (222)
T PF07970_consen  186 FSPIMVV  192 (222)
T ss_pred             ceeEEEE
Confidence            9999984

One of these proteins, PTX1 Q96RQ1 from SWISSPROT, is a homeodomain-containing transcription factor involved in regulating all pituitary hormone genes []. This protein is down regulated in prostate carcinoma []. The other protein, ERGIC-32 Q969X5 from SWISSPROT, is involved in protein transport from the ER to the Golgi [].

>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-40  Score=289.91  Aligned_cols=131  Identities=34%  Similarity=0.527  Sum_probs=111.1

Q ss_pred             ccccccCCCCCCceEEEEEEEeeeceEEEEeeC-----CCCCccCC---CCCcccEEEEEeeeccCCCcchhhhhhhhcc
Q 030360           27 ENVKRPAPKAGGCRIEGYVRVKKVPGNLIISAR-----SGAHSFDT---SEMNMSHVISHLSFGRKLSPKVMSDVQRLIP   98 (179)
Q Consensus        27 ~~~~~~~~~~eGCrI~G~l~VnKV~GnfhIs~~-----s~~h~~~~---~~~N~SH~I~~LsFG~~~~~~~~~~~~~~~~   98 (179)
                      ...+.+...+|||||+|++.||||||||||+++     +..|.++.   ..+||||+|||||||+.+|            
T Consensus       185 ~~~~~~~~~geGCRi~G~l~VNKVaGnfHia~g~~~~~~~~h~hd~~~~~~~n~SH~InhLSFG~~~p------------  252 (379)
T KOG2667|consen  185 FTNKAAEQKGEGCRIYGQLEVNKVAGNFHIAPGKSSQHSNAHVHDLSLLDNLNFSHRINHLSFGEYIP------------  252 (379)
T ss_pred             cccccCCCCCCceEEEEEEEEeeecceEEEccCCCccccccccchhhhcccCCceEEEeeeccCCCCc------------
Confidence            345567788999999999999999999999985     23466665   3799999999999999998            


Q ss_pred             cCCCCcCCCCCceeeeeeccCCceeEEEEEEEEEEeEEecCCccccceeeeeee--eEEeecCC----CCCCceEEEEEe
Q 030360           99 YLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEY--TAHSSLVQ----SIYIPAAKFHFE  172 (179)
Q Consensus        99 ~~~~~~nPLdg~~~~~~~~~~~~~~~~YflkVVPT~y~~~~~~~~~~~~~tyQY--T~~~~~~~----~~~~PgI~F~YD  172 (179)
                         ++.|||||+.+++   .++..+|+||+|||||.|.+..+..    +.||||  |++.+...    ..++|||||.||
T Consensus       253 ---~~~nPLdG~~~~~---~~~~~~~~Yf~KvVPT~y~~~~~~~----~~T~QysVt~~~~~~~~~~~~~~~PGifF~Ye  322 (379)
T KOG2667|consen  253 ---GIVNPLDGTNFIA---NEHLTTFQYFLKVVPTVYKYKSGRV----IDTNQYSVTEYEYVLHSHRAKSGIPGIFFKYE  322 (379)
T ss_pred             ---ccccCCCCccccc---cCCccceeeEEEEcceEEEeecCce----ecceeeeeeeeEEeccccccccCCCeEEEEEe
Confidence               8999999988854   3568999999999999999888764    899999  67766542    348999999999


Q ss_pred             CcceeEC
Q 030360          173 LSPMQVE  179 (179)
Q Consensus       173 ~SPi~V~  179 (179)
                      ||||+|+
T Consensus       323 lSPl~V~  329 (379)
T KOG2667|consen  323 LSPLMVK  329 (379)
T ss_pred             cCceEEE
Confidence            9999984

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00