Citrus Sinensis ID: 030366

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCVEFFLLHFVR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEccHHHHHHHHHHHHHHHHHEcccccccHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgimlrspplvIGFIIWCIvggaysidlppllrwkgnplMAAKIVlgnpvaftkpVLFTAAYLVIWNTAIAfvkdipdvegdkafglrtlpiiigkEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQaktndpsdnksaksFYMLTWKLYCVEFFLLHFVR
Flexible Loop (DISEMBL)
MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQaktndpsdnkSAKSFYMLTWKLYCVEFFLLHFVR
Low Complexity Region (SEG)
MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCVEFFLLHFVR
Disordered region (IsUnstruct)
*******PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQA***********KSFYMLTWKLYCVEFFLLHFV*
Disordered Region (DISOPRED)
MGI*LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCVEFFLLHFVR
Disordered Region (DISEMBL)
MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAK********SAKSFYMLTWKLYCVEFFLLHFVR
Disordered Region (DISPRO)
MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCVEFFLLHFVR
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCVEFFLLHFVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.994	0.450	0.373	2e-31
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.977	0.424	0.379	2e-31
B7FA90	404	Probable homogentisate ph	no	no	0.994	0.438	0.348	5e-30
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.960	0.418	0.354	4e-26
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.758	0.349	0.276	2e-10
Q0D576	379	Probable homogentisate ph	no	no	0.724	0.340	0.259	3e-08
Q8TZM7	277	Digeranylgeranylglyceryl	yes	no	0.247	0.158	0.520	6e-05
Q18J00	286	Digeranylgeranylglyceryl	yes	no	0.415	0.258	0.355	0.0002
Q3INH7	277	Digeranylgeranylglyceryl	yes	no	0.146	0.093	0.615	0.0006
O57753	277	Digeranylgeranylglyceryl	yes	no	0.325	0.209	0.402	0.0006

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 21/198 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVL-------------- 46
           +G ++ S PL     +  ++G AYSI+LP LLRWK   L+AA  +L              
Sbjct: 197 LGWIVGSWPLFWALFVSFMLGTAYSINLP-LLRWKRFALVAAMCILAVRAIIVQIAFYLH 255

Query: 47  ------GNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
                 G P+ FT+P++F  A++  ++  IA  KDIPD+EGDK FG+R+  + +G+++VF
Sbjct: 256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
              V ++ MAY   +LVGA SP +  K+++++ H  LA  LW +AK+ D S      S Y
Sbjct: 316 WTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCY 375

Query: 161 MLTWKLYCVEFFLLHFVR 178
           M  WKL+  E+ LL F++
Sbjct: 376 MFIWKLFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 21/195 (10%)

Query: 4   MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA--------------------K 43
           ++ S PL     I C+V  AY++DLP LLRWK  P++ A                     
Sbjct: 217 IVDSWPLFWTVFISCMVASAYNVDLP-LLRWKKYPVLTAINFIADVAVTRSLGFFLHMQT 275

Query: 44  IVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
            V   P  F +P++F  A + I+   IA  KDIPD+EGD+ FG+++L + +G ++VF + 
Sbjct: 276 CVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWIC 335

Query: 104 VNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLT 163
           V+++ M YG  +LVGA SP +  K++T++ H+ LA VLW  AK+ D + N    SFYM  
Sbjct: 336 VSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFI 395

Query: 164 WKLYCVEFFLLHFVR 178
           WKL+  E+FL+   R
Sbjct: 396 WKLHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 113/198 (57%), Gaps = 21/198 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKIVLG------------- 47
           +G  + S PL +   I  I+G AYSI+LP  LRWK + ++AA  +L              
Sbjct: 208 LGWAVGSQPLFLALFISFILGTAYSINLP-FLRWKRSAVVAALCILAVRAVIVQLAFFLH 266

Query: 48  -------NPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
                   P  FT+P++F  A++  ++  IA  KDIPD+EGD+ FG+++  + +G++KVF
Sbjct: 267 IQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVF 326

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + V ++ MAY   +L+GA S  +  K  T++ H+ LA +LW ++++ D +   +  SFY
Sbjct: 327 WICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFY 386

Query: 161 MLTWKLYCVEFFLLHFVR 178
           M  WKL+  E+ L+  VR
Sbjct: 387 MFIWKLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 21/192 (10%)

Query: 7   SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA--------------------KIVL 46
           S PL+   ++      AYSID+P LLRWK  P +AA                     +VL
Sbjct: 219 SWPLICNLVVIASSWTAYSIDVP-LLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVL 277

Query: 47  GNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNI 106
             P+ F + + F  A++  ++  +A  KDIPDVEGDK  G+ +  + +G+++ F + V+ 
Sbjct: 278 KRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSF 337

Query: 107 MLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTWKL 166
             MA+G  +L GA       K+ T + ++ LA +LW QAK+ D SD  S  SFYM  WKL
Sbjct: 338 FEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKL 397

Query: 167 YCVEFFLLHFVR 178
               FFL+  +R
Sbjct: 398 LYAGFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 41  AAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
           A +  LG P  ++ PV F  +++ ++   IA  KD+PDVEGD+ F + TL   +G   + 
Sbjct: 248 ATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIA 307

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISH----SALAFVLWRQAKTNDPSDNKSA 156
            +   ++L+ Y   + +  + P V    + + +H    S L F  W   K N   +  S 
Sbjct: 308 FLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISG 367

Query: 157 KSFYMLTWKLYCVEFFLLHFV 177
             +Y   W L+  E+ L  F+
Sbjct: 368 --YYRFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 41  AAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
           A +  LG    ++ PV F   ++ ++   IA  KD+PDVEGD+ + + TL   +G   + 
Sbjct: 241 ATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIA 300

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALA----FVLWRQAKTNDPSDNKSA 156
            +   +++  Y   + V    P    + V +  H+ALA    F  W   +     D  S 
Sbjct: 301 FLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAIS- 359

Query: 157 KSFYMLTWKLYCVEF 171
             +Y   W L+  E+
Sbjct: 360 -QYYRFIWNLFYAEY 373

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1963 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 4/48 (8%)

Query: 60  AAYLVIW----NTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVA 103
           A YL I     N +   +KDI D+EGDKA G RTLPIIIG++K   +A
Sbjct: 156 AGYLAICAFLVNVSREIMKDIEDIEGDKALGARTLPIIIGEKKAAIIA 203

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 35  KGNPLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIII 94
            G+  +     +G    F   VLF  A L      I  +KDI D++GD+  GL+TLPI+I
Sbjct: 145 TGSTFLFGAAAIGRITDFGVVVLFILAALATATREI--IKDIEDLDGDRKEGLQTLPIVI 202

Query: 95  GKEKVFSVAVNIMLMA 110
           G    + VA  ++L+A
Sbjct: 203 GVTPAYRVATGVLLVA 218

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Haloquadratum walsbyi (strain DSM 16790) (taxid: 362976)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A PE=3 SV=1

 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 23/26 (88%)

Query: 73  VKDIPDVEGDKAFGLRTLPIIIGKEK 98
           VKD+ D++GD+A GLRTLPI+IG+ +
Sbjct: 174 VKDVEDIDGDRAEGLRTLPIVIGERR 199

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) (taxid: 348780)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 9/67 (13%)

Query: 60  AAYLVIW----NTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVV 115
           A YL I     N +   +KDI D EGDK  G RTLPI+IGK+K       I+   +G + 
Sbjct: 156 AGYLAICAFLVNVSREIMKDIEDFEGDKRLGARTLPIMIGKKK-----SGIIASIFGFLT 210

Query: 116 LVGAFSP 122
           ++ +F P
Sbjct: 211 IISSFLP 217

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
359476155	397	PREDICTED: probable homogentisate phytyl	0.994	0.445	0.429	6e-38
295656253	401	homogentisate geranylgeranyl transferase	0.994	0.441	0.398	4e-35
219842170	411	homogentisate geranylgeranyl transferase	0.994	0.430	0.41	4e-35
296082088	398	unnamed protein product [Vitis vinifera]	0.921	0.412	0.427	2e-34
171190284	317	homogentisate geranylgeranyl transferase	0.994	0.558	0.409	9e-34
374461300	239	aromatic prenyltransferase, partial [Epi	0.966	0.719	0.424	2e-33
224143266	284	predicted protein [Populus trichocarpa]	0.921	0.577	0.383	1e-31
125598038	408	hypothetical protein OsJ_22157 [Oryza sa	0.994	0.433	0.373	2e-31
33391144	404	homogentisic acid geranylgeranyl transfe	0.994	0.438	0.373	2e-31
51535420	270	putative homogentisic acid geranylgerany	0.994	0.655	0.373	3e-31

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 123/198 (62%), Gaps = 21/198 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           MGIM +SPPL    +I  ++G AYSI++P LLRWK  PL+AA                  
Sbjct: 201 MGIMFQSPPLFCALLISFLLGTAYSIEIP-LLRWKRYPLLAASCILIVRAIVVQLAFFAH 259

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             K VLG  + +TK V+F  A++  ++T IA  KDIPDV+GD+ FG+++  + +G++KVF
Sbjct: 260 IQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVF 319

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + VN++LMAYG   ++GA S S+  K  T+  H ALA VLW +A++ D S  ++  SFY
Sbjct: 320 WLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFY 379

Query: 161 MLTWKLYCVEFFLLHFVR 178
           M  WKL+  E+FL+  VR
Sbjct: 380 MFIWKLFYAEYFLIPLVR 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/198 (39%), Positives = 119/198 (60%), Gaps = 21/198 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           MGI+ +SPP+    +I  + G AYS++LP LLRWK N  +AA                  
Sbjct: 205 MGIVFQSPPVFFALLICFLFGSAYSVELP-LLRWKRNAFLAAFSILMVRAITVNLAFFYH 263

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             K VLG P+ F + + F    + ++ T IA  KDIPDV+GD+ FG+++  + +G+++VF
Sbjct: 264 IQKYVLGRPMVFPRSLCFATVCISMFTTVIALFKDIPDVDGDRDFGIQSFSVCLGQKRVF 323

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + + I+L+AY   +++GA S  +L KLVT+I H  LA +LWR+A + +  DN S  SFY
Sbjct: 324 WLCIGILLIAYASALVIGASSSFLLSKLVTVIGHCTLASILWRRANSVNLEDNSSMTSFY 383

Query: 161 MLTWKLYCVEFFLLHFVR 178
           M  WKL+  E+ L+ FVR
Sbjct: 384 MSIWKLFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 121/200 (60%), Gaps = 23/200 (11%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           MGI  +SPPL+   +I   +G  YSI+LP  LRWK +  +AA                  
Sbjct: 213 MGITFQSPPLLAALLISFALGSVYSIELP-FLRWKKHAFLAASCILIVRAMVVQLAFFVH 271

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             K VLG  +   + ++F  A++  ++ AIA  KDIPDVEGD+ +G+++  + +G+E+V 
Sbjct: 272 IQKFVLGKSIFIPRSLMFATAFMCFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVL 331

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVL--CKLVTMISHSALAFVLWRQAKTNDPSDNKSAKS 158
            + VN++L+AYG  V+ GA SPS L   KL+TMI HS +A++LW +A+  D +  KS  S
Sbjct: 332 WLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITS 391

Query: 159 FYMLTWKLYCVEFFLLHFVR 178
           FYM  WKL+  E+FL+ FVR
Sbjct: 392 FYMFIWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 114/185 (61%), Gaps = 21/185 (11%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           MGIM +SPPL    +I  ++G AYSI++P LLRWK  PL+AA                  
Sbjct: 177 MGIMFQSPPLFCALLISFLLGTAYSIEIP-LLRWKRYPLLAASCILIVRAIVVQLAFFAH 235

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             K VLG  + +TK V+F  A++  ++T IA  KDIPDV+GD+ FG+++  + +G++KVF
Sbjct: 236 IQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFTVKLGQKKVF 295

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + VN++LMAYG   ++GA S S+  K  T+  H ALA VLW +A++ D S  ++  SFY
Sbjct: 296 WLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLSSKEAVTSFY 355

Query: 161 MLTWK 165
           M  WK
Sbjct: 356 MFIWK 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 119/198 (60%), Gaps = 21/198 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           MGIM +SPP++   ++    G AYSID+P L RWK N  +AA                  
Sbjct: 121 MGIMFQSPPVLYCLLVCFFFGTAYSIDVP-LFRWKKNAFLAAMCIVIVRAITVQLTVFYH 179

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             + VLG PV F++ + F    + ++ T IA  KDIPDV+GD+ FG++T+ + +GK++VF
Sbjct: 180 IQQYVLGRPVLFSRSLAFAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVF 239

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + + I+L+AYG  V++G+ S  +L KLVT+  H  LA +LW +A + D   NKS  SFY
Sbjct: 240 WLCITILLIAYGSAVVIGSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFY 299

Query: 161 MLTWKLYCVEFFLLHFVR 178
           M  WKL+  E+ L+ FVR
Sbjct: 300 MFIWKLFYAEYLLIPFVR 317

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461300|gb|AEZ53108.1| aromatic prenyltransferase, partial [Epimedium acuminatum]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 21/193 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           MGIM +SPPL+   +   ++  AYS+ LP  LRWK + ++ +                  
Sbjct: 35  MGIMFKSPPLLYSILTVFLLATAYSLHLP-FLRWKKSAVLTSVCIISVRALVIPLGFFLH 93

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             K VLG P   TKPV+F  A++ I +T IA +KDIPDV+GD+AFGL++L I +GKEKVF
Sbjct: 94  MQKYVLGRPAIITKPVMFAVAFMAIISTVIAVIKDIPDVDGDEAFGLQSLTIRLGKEKVF 153

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + V+ +LMAYG  V+VGA S  +  K++T++ H  LA +LW +A+T   S+  S  SFY
Sbjct: 154 WLGVSTLLMAYGTAVIVGASSTLMSNKIITVLGHCILASILWTRARTVVISEPASTLSFY 213

Query: 161 MLTWKLYCVEFFL 173
           +  WKL   E+ L
Sbjct: 214 LFVWKLLYAEYLL 226

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 108/185 (58%), Gaps = 21/185 (11%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           MGIM +SP L    +I C++G  YSI+LP  LRWK    +AA                  
Sbjct: 101 MGIMFQSPLLFSALLISCVLGSVYSIELP-FLRWKKQAFLAATCIMIVRAIVVQLAFFVH 159

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             K VLG     T+ ++F  A++  ++  IA  KDIPDV+GD+ +G+++  + +G+E+VF
Sbjct: 160 MQKFVLGKTTVVTRSLVFATAFMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVF 219

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + VN++L+AYG  V+VGA S  +  K +T++ H  LAF+LW +A++ D +   S  SFY
Sbjct: 220 WLCVNMLLIAYGAAVVVGASSTFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFY 279

Query: 161 MLTWK 165
           M  WK
Sbjct: 280 MFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125598038|gb|EAZ37818.1| hypothetical protein OsJ_22157 [Oryza sativa Japonica Group]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 21/198 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           +GI  +S PL+    I   +G AYS+D  PLLRWK N  +AA                  
Sbjct: 212 IGIRSKSAPLLCALFISFFLGSAYSVD-APLLRWKRNAFLAASCILFVRAVLVQLAFFAH 270

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             + VL  P+A TK V+F   ++  +++ IA  KDIPD++GD+ FG+ +L + +G E+V+
Sbjct: 271 MQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVY 330

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + +NI+L AYG  +L GA S ++   ++T+  H  LAF LW++A+  D  +     SFY
Sbjct: 331 WLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFY 390

Query: 161 MLTWKLYCVEFFLLHFVR 178
           M  WKL+  E+FL+ FV+
Sbjct: 391 MFIWKLFYAEYFLIPFVQ 408

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391144|gb|AAP43913.1| homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 21/198 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           +GI  +S PL+    I   +G AYS+D  PLLRWK N  +AA                  
Sbjct: 208 IGIRSKSAPLLCALFISFFLGSAYSVD-APLLRWKRNAFLAASCILFVRAVLVQLAFFAH 266

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             + VL  P+A TK V+F   ++  +++ IA  KDIPD++GD+ FG+ +L + +G E+V+
Sbjct: 267 MQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVY 326

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + +NI+L AYG  +L GA S ++   ++T+  H  LAF LW++A+  D  +     SFY
Sbjct: 327 WLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFY 386

Query: 161 MLTWKLYCVEFFLLHFVR 178
           M  WKL+  E+FL+ FV+
Sbjct: 387 MFIWKLFYAEYFLIPFVQ 404

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51535420|dbj|BAD37319.1| putative homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group] gi|51535642|dbj|BAD37616.1| putative homogentisic acid geranylgeranyl transferase [Oryza sativa Japonica Group]

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 21/198 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           +GI  +S PL+    I   +G AYS+D  PLLRWK N  +AA                  
Sbjct: 74  IGIRSKSAPLLCALFISFFLGSAYSVD-APLLRWKRNAFLAASCILFVRAVLVQLAFFAH 132

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             + VL  P+A TK V+F   ++  +++ IA  KDIPD++GD+ FG+ +L + +G E+V+
Sbjct: 133 MQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVY 192

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + +NI+L AYG  +L GA S ++   ++T+  H  LAF LW++A+  D  +     SFY
Sbjct: 193 WLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFALWQRAQHCDVENKAWITSFY 252

Query: 161 MLTWKLYCVEFFLLHFVR 178
           M  WKL+  E+FL+ FV+
Sbjct: 253 MFIWKLFYAEYFLIPFVQ 270

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.752	0.340	0.410	1.7e-34
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.752	0.329	0.417	5.6e-34
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.752	0.326	0.417	9e-34
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.758	0.343	0.269	3.5e-12

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 55/134 (41%), Positives = 86/134 (64%)

Query:    45 VLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAV 104
             V G P+ FT+P++F  A++  ++  IA  KDIPD+EGDK FG+R+  + +G+++VF   V
Sbjct:   260 VFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCV 319

Query:   105 NIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTW 164
              ++ MAY   +LVGA SP +  K+++++ H  LA  LW +AK+ D S      S YM  W
Sbjct:   320 TLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIW 379

Query:   165 KLYCVEFFLLHFVR 178
             KL+  E+ LL F++
Sbjct:   380 KLFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 299 (110.3 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
 Identities = 56/134 (41%), Positives = 87/134 (64%)

Query:    45 VLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAV 104
             V   P  F +P++F  A + I+   IA  KDIPD+EGD+ FG+++L + +G ++VF + V
Sbjct:   274 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 333

Query:   105 NIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTW 164
             +++ MAYG  +LVGA SP +  K++T++ H+ LA VLW  AK+ D + N   +SFYM  W
Sbjct:   334 SLLEMAYGVTILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIW 393

Query:   165 KLYCVEFFLLHFVR 178
             KL+  E+ L+   R
Sbjct:   394 KLHTAEYCLIPLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 299 (110.3 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
 Identities = 56/134 (41%), Positives = 86/134 (64%)

Query:    45 VLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAV 104
             V   P  F +P++F  A + I+   IA  KDIPD+EGD+ FG+++L + +G ++VF + V
Sbjct:   277 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 336

Query:   105 NIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTW 164
             +++ M YG  +LVGA SP +  K++T++ H+ LA VLW  AK+ D + N    SFYM  W
Sbjct:   337 SLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIW 396

Query:   165 KLYCVEFFLLHFVR 178
             KL+  E+FL+   R
Sbjct:   397 KLHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 38/141 (26%), Positives = 67/141 (47%)

Query:    41 AAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
             A +  LG P  ++ PV F  +++ ++   IA  KD+PDVEGD+ F + TL   +G   + 
Sbjct:   255 ATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIA 314

Query:   101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISH----SALAFVLWRQAKTNDPSDNKSA 156
              +   ++L+ Y   + +  + P V    + + +H    S L F  W   K N   +  + 
Sbjct:   315 FLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKE--AI 372

Query:   157 KSFYMLTWKLYCVEFFLLHFV 177
               +Y   W L+  E+ L  F+
Sbjct:   373 SGYYRFIWNLFYAEYLLFPFL 393


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.143   0.455    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      178       178   0.00086  109 3  11 22  0.46    31
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.05u 0.12s 16.17t   Elapsed:  00:00:00
  Total cpu time:  16.05u 0.12s 16.17t   Elapsed:  00:00:00
  Start:  Fri May 10 22:12:25 2013   End:  Fri May 10 22:12:25 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-50
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	6e-26
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	4e-07
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	5e-07
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	5e-07
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	8e-07
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	6e-06
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	4e-05
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	4e-05
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	0.001
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  163 bits (415), Expect = 1e-50
 Identities = 77/198 (38%), Positives = 118/198 (59%), Gaps = 21/198 (10%)

Query: 1   MGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------------------ 42
           MG ++ S PL     +  ++G AYSI+LP LLRWK + + AA                  
Sbjct: 84  MGWIVGSWPLFWALFVSFVLGTAYSINLP-LLRWKRSAVAAASCILAVRAVVVQLAFFLH 142

Query: 43  --KIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVF 100
               VLG P  FT+P++F  A++  ++  IA  KDIPDVEGD+ FG+R+  + +G+++VF
Sbjct: 143 MQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVF 202

Query: 101 SVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFY 160
            + VN++ MAY   +LVGA S  +  K++T++ H  LA +LW++A++ D S   +  SFY
Sbjct: 203 WLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSVDLSSKAAITSFY 262

Query: 161 MLTWKLYCVEFFLLHFVR 178
           M  WKL+  E+FL+  VR
Sbjct: 263 MFIWKLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  100 bits (251), Expect = 6e-26
 Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 22/190 (11%)

Query: 4   MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA-------------------KI 44
            L  P L+I   I  ++G AYS  LPP+ R K  PL+AA                   + 
Sbjct: 116 ALLGPWLLITVGISLLIGTAYS--LPPI-RLKRFPLLAALCIFTVRGVIVNLGLFLHFQW 172

Query: 45  VLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAV 104
           +LG  V     V     +++++  AIA  KDIPD+EGD+ + + T  + +GK+ VF ++ 
Sbjct: 173 LLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSC 232

Query: 105 NIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTW 164
            ++   Y G++ VG  S   +     ++SH  L  +LW +++  D  D ++   FY   W
Sbjct: 233 WVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIW 292

Query: 165 KLYCVEFFLL 174
           KL+ +E+ L 
Sbjct: 293 KLFFLEYLLF 302

Length = 308

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 15/132 (11%)

Query: 3   IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLR-------------WKGNPLMAAKIVLGNP 49
            ++  P   + FII  I+G  YS+     L+             W  +PL+         
Sbjct: 99  AVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQL- 157

Query: 50  VAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLM 109
                 +L  A ++ + +     V DI D+EGD+  GL+TLPI++GKE+     + + L+
Sbjct: 158 -TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLL 216

Query: 110 AYGGVVLVGAFS 121
               ++L     
Sbjct: 217 FLILLILGVYTG 228

Length = 285

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 38  PLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKE 97
            L  A  V G+       +L  AA L  W      +  I D+EGD+  GL++LP++ G +
Sbjct: 154 ALAGAAAVGGSLPLLA-WLLLLAAIL--WTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIK 210

Query: 98  KVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAK 157
           K  ++A   +L+     +LV     + L  L+ ++     A +L  Q    D  D  +  
Sbjct: 211 KALALA---LLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACF 267

Query: 158 SFYMLTWKLYCVEFFLL 174
           + + +   L  + F  L
Sbjct: 268 ALFDVNLLLGLLLFIGL 284

Length = 289

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 56  VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
           VLF  A L     A   +KD+ D+EGD+A G RTLPI+IG  K   VA   +L+A
Sbjct: 161 VLFALAALAT--LAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVA 213

Length = 276

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 61  AYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAV 104
           A+LV  N A   +KDI D+EGDKA G +TLPIIIGK++   +  
Sbjct: 163 AFLV--NVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGA 204

Length = 277

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 24/178 (13%)

Query: 4   MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWK--------------GNPLMAAKIVLGNP 49
           +L  P L++  ++  ++G  YS    P LR K              G  ++     +G  
Sbjct: 88  LLLGPLLLLLGLLGLLLGLLYS----PPLRLKRRPLLGELVVGLAFGLLILLGAYAVGGD 143

Query: 50  VAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLM 109
           +     +L    +L+    AI    DI DVEGD+  G+RTLP+ +G+++  +    +  +
Sbjct: 144 IPSPLLLLALPVFLLSL--AILLTNDIRDVEGDRKAGIRTLPVRLGRKRALA----LYAL 197

Query: 110 AYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYMLTWKLY 167
                +L+      +L  L+ +++   LA  L   A+     + +     ++    L+
Sbjct: 198 LLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIALLF 255

Length = 259

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)

Query: 39  LMAAKIVLGNPVAFTKP---VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG 95
           L     + G  +A  +    V+  AA   +       +KDI DVEGD+  G RTL I+ G
Sbjct: 138 LTGMTFIFGG-IAVGELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYG 196

Query: 96  KEKVFSVAVNIMLMAYGG---VVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSD 152
           ++    +A  + ++A        L G F+   L     +++     +  +   ++ D   
Sbjct: 197 EKIAGRIAAALFILAVLLSPLPYLFGIFNILYL--APVLVADLIFLYSAYSLLRSQDRET 254

Query: 153 NKSAKSFYMLTWKLYCVEFFL 173
            +  +   +    L  V F L
Sbjct: 255 IRKVRKITLTAMLLALVAFAL 275

Length = 279

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 26/175 (14%)

Query: 8   PPLVIGFIIWCIVGGAYSIDLPPLLR----WKGNPLMAAKIV----LGNPVAFTKPVLFT 59
             L++ F +  IV  A    +PP+      W G P +         +     F      +
Sbjct: 105 NWLIVLFTVVGIVL-AVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQS 163

Query: 60  AAYLVIWNTA---IAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVV- 115
               +I++     I  + D   VEGD+  GLR+LP++IG ++   VAV  + +    V+ 
Sbjct: 164 VVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223

Query: 116 --------LVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKSFYML 162
                    V      V   LV  I +    F+  R  + N    N +A  FY+L
Sbjct: 224 LLLIWGQPWVATI---VFLLLVAQIYNQIKLFL--RDPQQNYVRYNATANPFYVL 273

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 38  PLMAAKIVLGNPVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKE 97
           P  A     G  +     V+    Y  +    I  + D   VEGD+  GLR+LP++ G++
Sbjct: 174 PWWAGAAAFGAGLPSWPIVILALLY-SLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEK 232

Query: 98  KVFSVAVNIMLMAYGGVV--LVGAFSP---SVLCKLVTMISHSALAFVLWRQAKTNDPSD 152
               +A  ++ +    V+  L+    P   +++  L+  I    L   L R     D   
Sbjct: 233 NAARIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLL--IPQITLQDRLLRDPLERDVWY 290

Query: 153 NKSAKSFYML 162
           N SA+ FY+L
Sbjct: 291 NASAQPFYVL 300

Length = 314

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 56  VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMA 110
           +LF  A+   W+  I  VKDI D+EGD    + TLPI  G +K + +A  ++++A
Sbjct: 158 ILFLCAFFSTWSREI--VKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILA 210

Length = 279

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	99.9
PRK13105	282	ubiA prenyltransferase; Reviewed	99.79
PRK12872	285	ubiA prenyltransferase; Reviewed	99.75
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.74
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.73
PRK05951	296	ubiA prenyltransferase; Reviewed	99.72
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.7
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.7
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.69
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.69
PRK13591	307	ubiA prenyltransferase; Provisional	99.68
PLN02922	315	prenyltransferase	99.68
PLN00012	375	chlorophyll synthetase; Provisional	99.68
PRK12884	279	ubiA prenyltransferase; Reviewed	99.67
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.66
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.66
PRK12888	284	ubiA prenyltransferase; Reviewed	99.64
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.64
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.64
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.63
PRK12882	276	ubiA prenyltransferase; Reviewed	99.63
PRK12895	286	ubiA prenyltransferase; Reviewed	99.63
PRK13106	300	ubiA prenyltransferase; Reviewed	99.61
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.6
PRK12875	282	ubiA prenyltransferase; Reviewed	99.59
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.57
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.55
PRK12886	291	ubiA prenyltransferase; Reviewed	99.54
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.53
PRK12876	300	ubiA prenyltransferase; Reviewed	99.53
PRK12874	291	ubiA prenyltransferase; Reviewed	99.52
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.52
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.52
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.52
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.49
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.46
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.42
PRK12873	294	ubiA prenyltransferase; Reviewed	99.42
PRK12871	297	ubiA prenyltransferase; Reviewed	99.42
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.21
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.16
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.14
PRK13592	299	ubiA prenyltransferase; Provisional	99.03
PRK13362	306	protoheme IX farnesyltransferase; Provisional	98.86
PLN02776	341	prenyltransferase	98.04
KOG4581	359	consensus Predicted membrane protein [Function unk	97.42
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	97.09
PRK12884	279	ubiA prenyltransferase; Reviewed	94.39
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	93.29
PRK12872	285	ubiA prenyltransferase; Reviewed	93.05
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	92.25
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	92.2
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	91.72
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	90.64
PRK08238	479	hypothetical protein; Validated	90.22
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	89.87
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	89.71
PRK12882	276	ubiA prenyltransferase; Reviewed	89.18
PRK13595	292	ubiA prenyltransferase; Provisional	89.01
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	88.66
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	88.65
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	88.16
PRK08238	479	hypothetical protein; Validated	87.86
PRK12392	331	bacteriochlorophyll c synthase; Provisional	87.7
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	86.81
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	86.72
PLN00012	375	chlorophyll synthetase; Provisional	86.24
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	85.51
PRK12873	294	ubiA prenyltransferase; Reviewed	85.41
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	85.22
PRK12875	282	ubiA prenyltransferase; Reviewed	85.05
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	84.71
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	83.95
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	83.01
PLN02776	341	prenyltransferase	80.23

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=3.7e-45  Score=305.50  Aligned_cols=176  Identities=43%  Similarity=0.843  Sum_probs=158.2

Q ss_pred             ccccccHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH-H-------------------HHhcccccchHHHHHHHH
Q 030366            2 GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA-K-------------------IVLGNPVAFTKPVLFTAA   61 (178)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~-~-------------------~~~G~~~~~~~~~~~~~~   61 (178)
                      |++.+++++++++..+++++++||.++| |+|+||+|++++ .                   +++|.+...++++++...
T Consensus        85 a~~~g~~~l~~al~~~~~lg~~YS~~lp-~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~  163 (280)
T PLN02878         85 GWIVGSWPLFWALFVSFVLGTAYSINLP-LLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATA  163 (280)
T ss_pred             HHHHChHHHHHHHHHHHHHHHHHHccCC-CcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHH
Confidence            3456778899999899899999998788 999999998776 1                   122433344556777777


Q ss_pred             HHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 030366           62 YLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVL  141 (178)
Q Consensus        62 f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l  141 (178)
                      |+++++.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+..+..++..+++.++..||++++..+
T Consensus       164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L  243 (280)
T PLN02878        164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASIL  243 (280)
T ss_pred             HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999888899999999999999999


Q ss_pred             HHhhhhCCCCChHHHHHHHHHHHHHHHHHHHhhhhcC
Q 030366          142 WRQAKTNDPSDNKSAKSFYMLTWKLYCVEFFLLHFVR  178 (178)
Q Consensus       142 ~~~~~~vd~~~~~~~~~~y~fiw~lf~~~~~~~p~~~  178 (178)
                      ++|++++|.++++++++|||||||+||+||+++|++|
T Consensus       244 ~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        244 WQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.1e-39  Score=277.86  Aligned_cols=170  Identities=32%  Similarity=0.598  Sum_probs=150.4

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhc----------ccccchHHHHHHHHHHHHH
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLG----------NPVAFTKPVLFTAAYLVIW   66 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G----------~~~~~~~~~~~~~~f~~l~   66 (178)
                      .+++++....++.+++++||  .| |+|+||+|+.++         ...+|          .....+...++...+.+++
T Consensus       118 ~~~~~~~~~~~~~~lg~~Ys--~p-P~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  194 (308)
T PRK12887        118 LGPWLLITVGISLLIGTAYS--LP-PIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVF  194 (308)
T ss_pred             HhHHHHHHHHHHHHHHHHHc--CC-chhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence            46888888899999999999  68 999999998665         11122          1112345667777788899


Q ss_pred             HHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh
Q 030366           67 NTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAK  146 (178)
Q Consensus        67 ~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~  146 (178)
                      +.+++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+..+..+...++...+.+||++.+..+++|.+
T Consensus       195 ~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (308)
T PRK12887        195 TFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQ  274 (308)
T ss_pred             HHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999988888888888788999999999999999


Q ss_pred             hCCCCChHHHHHHHHHHHHHHHHHHHhhhhcC
Q 030366          147 TNDPSDNKSAKSFYMLTWKLYCVEFFLLHFVR  178 (178)
Q Consensus       147 ~vd~~~~~~~~~~y~fiw~lf~~~~~~~p~~~  178 (178)
                      ++|.+|++|+++|||||||+||+||+++|++|
T Consensus       275 ~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        275 RVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999975

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.90  E-value=7.2e-23  Score=172.91  Aligned_cols=154  Identities=16%  Similarity=0.180  Sum_probs=110.9

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH--HHHhcc------cccchHHHHHHHHHHHHHHHHHHHHccCCC
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA--KIVLGN------PVAFTKPVLFTAAYLVIWNTAIAFVKDIPD   78 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~--~~~~G~------~~~~~~~~~~~~~f~~l~~~~~~i~~di~D   78 (178)
                      +|..+.....+.+++++||  .| |+|+|++|+.++  +..+|.      ........+.......+|..++|++||+||
T Consensus       117 ~~~~~~l~~v~~~l~~~YS--~p-PlRlK~rp~l~~l~~~~~g~p~~~~~~~~g~~~~~~~l~a~~~w~~g~dii~ai~D  193 (292)
T PRK13595        117 PPAATLLLLLYAALFVGYS--LP-PLRFKARPFLDGLSNAAYALPLALPALALGAPVPWPPLLALMAWSVGKHAFDAAQD  193 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHc--cC-ccchhcCcchhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHhccC
Confidence            4566667778889999999  58 999999999876  222232      111111122222345678899999999999


Q ss_pred             hHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHHHHH
Q 030366           79 VEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAKS  158 (178)
Q Consensus        79 iegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~~~~  158 (178)
                      +||||+.|+||+|+++|+|++.+++..+..++.+.+...  ..|....   ..+.+.   ....+.+  .|++++++++.
T Consensus       194 iegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~--~~~~~~~---~~~~~~---~~~~~~~--~~~~~~~~~~~  263 (292)
T PRK13595        194 IPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPV--SRLTALA---LWLICG---GMALALW--RRPTPETAHRL  263 (292)
T ss_pred             hHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHh--cchHHHH---HHHHHH---HHHHHHh--cCCCHHHHhcc
Confidence            999999999999999999999999999887776643322  2333221   222222   2222222  69999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 030366          159 FYMLTWKLYCVEFFL  173 (178)
Q Consensus       159 ~y~fiw~lf~~~~~~  173 (178)
                      |..|+|.|+.++++.
T Consensus       264 ~~~~~~~~~~~g~~~  278 (292)
T PRK13595        264 YPLSIVTPWIVGTVA  278 (292)
T ss_pred             chHHHHHhHHHHHHH
Confidence            999999999998864

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.79  E-value=5.6e-18  Score=142.96  Aligned_cols=110  Identities=21%  Similarity=0.309  Sum_probs=88.7

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccc---cchHHHHHHHHHHHHHHHHHHHH
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPV---AFTKPVLFTAAYLVIWNTAIAFV   73 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~---~~~~~~~~~~~f~~l~~~~~~i~   73 (178)
                      ++|+++....++++.++.||  .| |.|+|++|+.++         ..++|...   ..+...+.....+.+++.+++++
T Consensus       103 ~~~~~~~l~~~ai~~~~~YS--~~-p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii  179 (282)
T PRK13105        103 GSWASGLVLAVSVFAVVAYS--AP-GLRFKERPFLDSLTSSTHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAF  179 (282)
T ss_pred             hhHHHHHHHHHHHHHHHHhc--CC-CccccccchHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence            46778888889999999999  57 999999998766         11222211   12334555666677899999999


Q ss_pred             ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 030366           74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVG  118 (178)
Q Consensus        74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~  118 (178)
                      ||+||+||||++|+||+|+++|+|++.+++..++.++++..+..+
T Consensus       180 ~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        180 GAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988776433

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.75  E-value=6.7e-17  Score=135.69  Aligned_cols=155  Identities=27%  Similarity=0.330  Sum_probs=103.7

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcc-cccchhhhhH---HHHhcc----------cccchHHHHHHHHHHHHHHHHHH
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLL-RWKGNPLMAA---KIVLGN----------PVAFTKPVLFTAAYLVIWNTAIA   71 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~pl-rlK~~p~~~~---~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~   71 (178)
                      .+|+.+....++.++++.||.  | |. |+||.|..++   ....|.          ....+...+....+.+++.+.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~Ys~--~-~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~  178 (285)
T PRK12872        102 GGPKFALIFIIPLILGILYSV--F-FKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLYAVFIFLKSFIRE  178 (285)
T ss_pred             ccHHHHHHHHHHHHHHHHHhC--h-hHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence            468888888888899999994  4 33 6899887766   111111          11123344555566778889999


Q ss_pred             HHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCC
Q 030366           72 FVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPS  151 (178)
Q Consensus        72 i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~  151 (178)
                      ++||++|+||||++|++|+|+++|+|+|++++..++.++++..+........++.   ...........+.+.++...++
T Consensus       179 ~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  255 (285)
T PRK12872        179 IVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLL---LLVLLLLLAYVLYYIIKLFAAD  255 (285)
T ss_pred             HHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999998888877765554433331   2222223334444444444333


Q ss_pred             ChH------HHHHHHHHHHHH
Q 030366          152 DNK------SAKSFYMLTWKL  166 (178)
Q Consensus       152 ~~~------~~~~~y~fiw~l  166 (178)
                      |++      .+.+.+|+.+.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~g~~  276 (285)
T PRK12872        256 DKKDLLYLSLLDKEHMLLGLI  276 (285)
T ss_pred             cccchhHHHHHhHHHHHHHHH
Confidence            332      345556665543

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.74  E-value=6e-17  Score=136.32  Aligned_cols=112  Identities=22%  Similarity=0.314  Sum_probs=81.3

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHHhcc-------c--ccchHHHHHHHHHHHHHHHHHHHH
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIVLGN-------P--VAFTKPVLFTAAYLVIWNTAIAFV   73 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~~G~-------~--~~~~~~~~~~~~f~~l~~~~~~i~   73 (178)
                      ++|.......++.+.+++||  .| |+|+||++..++   ...++.       .  ...+...+......++++.+++.+
T Consensus       104 ~~~~~~~l~~~~~~~~~~Ys--~~-p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~  180 (283)
T TIGR01476       104 GNWLIVLFTVVGIVLAVIYS--MP-PIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGAHGIMTL  180 (283)
T ss_pred             HHHHHHHHHHHHHHHhheec--Cc-hhhhccCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44544666677888899999  57 999999986544   111111       0  112233333344456788889999


Q ss_pred             ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030366           74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAF  120 (178)
Q Consensus        74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~  120 (178)
                      ||+||+||||+.|+||+|+++|+|++++++..++..+++..+.....
T Consensus       181 nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~  227 (283)
T TIGR01476       181 NDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI  227 (283)
T ss_pred             HhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888887766544433

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.73  E-value=8.7e-17  Score=138.50  Aligned_cols=133  Identities=22%  Similarity=0.272  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHHhcc------c---ccchHHHHHHHHHHHHHHHHHHHHcc
Q 030366            8 PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIVLGN------P---VAFTKPVLFTAAYLVIWNTAIAFVKD   75 (178)
Q Consensus         8 ~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~~G~------~---~~~~~~~~~~~~f~~l~~~~~~i~~d   75 (178)
                      +..+...+++++++++||  .| |+|+||+++.+.   ...+|.      .   ...+...+......++++.+++++||
T Consensus       125 ~~il~~~~~~l~l~~~YS--~~-P~~lKr~~~~g~~~vGl~~~~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d  201 (331)
T PRK12392        125 MVIISSILAGLFVAYIYS--AP-PLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMND  201 (331)
T ss_pred             HHHHHHHHHHHHHhhhhc--CC-chhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            344455567788999999  47 999999876543   111111      0   11233344455567789999999999


Q ss_pred             CCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh
Q 030366           76 IPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAK  146 (178)
Q Consensus        76 i~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~  146 (178)
                      ++|+||||+.|+||+|+++|+|++.+++...+.++.+..+..+......+   .+....++.+..+.+|.+
T Consensus       202 ~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~  269 (331)
T PRK12392        202 FKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQ  269 (331)
T ss_pred             ccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987777666666665555544332   223333334444444444

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.72  E-value=7.5e-16  Score=130.74  Aligned_cols=163  Identities=18%  Similarity=0.188  Sum_probs=113.4

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHH------hcc----cccchHHHHHHHHHHHHHHHHHHHH
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIV------LGN----PVAFTKPVLFTAAYLVIWNTAIAFV   73 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~------~G~----~~~~~~~~~~~~~f~~l~~~~~~i~   73 (178)
                      .+++.+...+++.++++.||  .| |+++|++|+  ....+.      +|.    ....+...+.......+++..+...
T Consensus       114 ~~~~~l~l~~~~~~~~~~Yt--~~-P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~  190 (296)
T PRK05951        114 RGIGAVTLALLGVFLWTCYM--GP-PFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLS  190 (296)
T ss_pred             ccHHHHHHHHHHHHHHHHHc--CC-CcccCCCCchHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence            45677777788999999999  47 888997653  111111      221    1122333444555566778888999


Q ss_pred             ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCCh
Q 030366           74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDN  153 (178)
Q Consensus        74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~  153 (178)
                      ||+||+|+||+.|+||+|+++|+|++ +........+|+..+........++......++.-.....+.++++..|.++.
T Consensus       191 n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~  269 (296)
T PRK05951        191 NNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPD  269 (296)
T ss_pred             CCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence            99999999999999999999999999 66666677777776666665544443445666666667777788888777777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 030366          154 KSAKSFYMLTWKLYCVEFF  172 (178)
Q Consensus       154 ~~~~~~y~fiw~lf~~~~~  172 (178)
                      ++..+.++..=.++..+.+
T Consensus       270 ~~~~~~~~~~g~l~~~~~~  288 (296)
T PRK05951        270 EATVQLFMLFGYLYILATL  288 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7766666665555544443

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.70  E-value=2.1e-15  Score=127.57  Aligned_cols=117  Identities=16%  Similarity=0.165  Sum_probs=93.1

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhc----------ccccchHHHHHHHHHHHHHHHHHHHH
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLG----------NPVAFTKPVLFTAAYLVIWNTAIAFV   73 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G----------~~~~~~~~~~~~~~f~~l~~~~~~i~   73 (178)
                      ++|+++..+.++.+.++.||  .| |+++|++|+  +.....+|          ++...+...+.......+.+.++...
T Consensus       104 ~~~~~l~lg~~g~~~~~~Yt--~g-P~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~  180 (285)
T TIGR02235       104 WQITVLALVGLCCFLGYLYQ--GP-PFRLGYQGLGEPICWLCFGPLAIAAALYAQSQSFSLIPWKASILVGLATTLILFC  180 (285)
T ss_pred             hhHHHHHHHHHHHHHHHhhc--CC-CcccCCCCccHHHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHh
Confidence            45888888899999999999  47 999999884  22212222          12233455566666778889999999


Q ss_pred             ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366           74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL  125 (178)
Q Consensus        74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~  125 (178)
                      ||++|+|+||+.|+||+|+++|+|++.++...+...+|+..+........+|
T Consensus       181 Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~  232 (285)
T TIGR02235       181 SHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPW  232 (285)
T ss_pred             cCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            9999999999999999999999999999999999999998777766655444

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.70  E-value=8.1e-16  Score=131.12  Aligned_cols=111  Identities=23%  Similarity=0.267  Sum_probs=83.6

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhHH---HHhc-------cc--ccchHHHHHHHHHHHHHHHHHHHHc
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAK---IVLG-------NP--VAFTKPVLFTAAYLVIWNTAIAFVK   74 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~~---~~~G-------~~--~~~~~~~~~~~~f~~l~~~~~~i~~   74 (178)
                      +|+.+...+++++++++||  .| |+++||++..++.   ..++       ..  ...+...+......++++.++++.|
T Consensus       127 ~~~~~~l~~~~~~~~~~Yt--~g-P~~lk~~g~~G~i~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n  203 (306)
T TIGR02056       127 FPNVFVLALFGSFIAFIYS--AP-PLKLKQNGWLGNFALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVN  203 (306)
T ss_pred             chHHHHHHHHHHHHHHHHc--CC-hhhhhhcccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777888899999999  47 9999999765441   1111       11  2223334455555678999999999


Q ss_pred             cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030366           75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAF  120 (178)
Q Consensus        75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~  120 (178)
                      |++|+|+||+.|+||+|+++|+|++++++..++..+++..+.....
T Consensus       204 ~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~  249 (306)
T TIGR02056       204 DFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLA  249 (306)
T ss_pred             HccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988877777655554433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.69  E-value=2.5e-15  Score=128.16  Aligned_cols=117  Identities=18%  Similarity=0.162  Sum_probs=92.5

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHH
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PVAFTKPVLFTAAYLVIWNTAIAFV   73 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~i~   73 (178)
                      ++|+++..++++++.+++||  .| |+++|++|+  +.....+|.          ...++...+.......+.+..+...
T Consensus       117 ~g~~~l~ig~~g~~~~~~YT--~g-P~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~  193 (304)
T PRK07419        117 SDWTVLGLVLLCCFLGYLYQ--GP-PFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFC  193 (304)
T ss_pred             hcHHHHHHHHHHHHHhhecc--CC-CcccCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            57889989999999999999  47 999999884  111122221          2233445556666677888899999


Q ss_pred             ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366           74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL  125 (178)
Q Consensus        74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~  125 (178)
                      ||++|+|.||+.|+||+|+++|+|+++++...+...+|+..+........++
T Consensus       194 Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~  245 (304)
T PRK07419        194 SHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPW  245 (304)
T ss_pred             cCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            9999999999999999999999999999999999999998877766654444

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.69  E-value=3.7e-15  Score=125.84  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=89.0

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhh--hHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHHc
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLM--AAKIVLGN----------PVAFTKPVLFTAAYLVIWNTAIAFVK   74 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~--~~~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~i~~   74 (178)
                      +++++...+++.+++++||  .| |.|+|++++-  .....+|.          ....+...+....+..+++..+++.|
T Consensus       112 ~~~~~~~~~~~~~~~~~Ys--~~-p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n  188 (293)
T PRK06080        112 GWWLLLLGLLCIAAAILYT--GG-PKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLAN  188 (293)
T ss_pred             hHHHHHHHHHHHHHhhhhc--CC-CCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            5677777788889999999  47 8888886631  11111221          12233455666777788999999999


Q ss_pred             cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366           75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL  125 (178)
Q Consensus        75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~  125 (178)
                      |+||+|+||++|+||+|+++|+|+++++...++.++++..+........++
T Consensus       189 ~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~  239 (293)
T PRK06080        189 NIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP  239 (293)
T ss_pred             CCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            999999999999999999999999999999999999998877766553333

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.68  E-value=9.7e-16  Score=130.34  Aligned_cols=132  Identities=19%  Similarity=0.183  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhhCC---CCCcccccchhhhhH---HHHhcc-----cccchHHH---HHHHHHHHHHHHHHHHHccCCC
Q 030366           13 GFIIWCIVGGAYSID---LPPLLRWKGNPLMAA---KIVLGN-----PVAFTKPV---LFTAAYLVIWNTAIAFVKDIPD   78 (178)
Q Consensus        13 ~~~~~~~lg~~Ys~~---lp~plrlK~~p~~~~---~~~~G~-----~~~~~~~~---~~~~~f~~l~~~~~~i~~di~D   78 (178)
                      ..+++.+.++.||.+   .|.|+|+|+.|..++   ...+|.     ........   ..+..+.....++++++||++|
T Consensus       124 l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~~~~~~i~l~~~~~l~~~~iindirD  203 (307)
T PRK13591        124 LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSLIPVGLIFLFFGVKLFINSCVYDFKD  203 (307)
T ss_pred             HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            346778889999963   256779999887766   222221     11111111   1122222234477889999999


Q ss_pred             hHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Q 030366           79 VEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQ  144 (178)
Q Consensus        79 iegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~  144 (178)
                      +||||+.|+||+|+++|+|+|+++...++.++++..+........++......-+..+....++..
T Consensus       204 iEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~  269 (307)
T PRK13591        204 VKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVY  269 (307)
T ss_pred             hHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887777666544433333333334444444443

>PLN02922 prenyltransferase

Probab=99.68  E-value=8.4e-15  Score=125.48  Aligned_cols=117  Identities=21%  Similarity=0.259  Sum_probs=91.9

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cc----------cchHHHHHHHHHH
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PV----------AFTKPVLFTAAYL   63 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~----------~~~~~~~~~~~f~   63 (178)
                      ++|++++.+.++++.+++||  .| |+++|++|+  +.....+|.          +.          ..+...+...+..
T Consensus       121 ~~~~~l~iG~~g~~~~~~Yt--~g-P~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~  197 (315)
T PLN02922        121 GNIRVILLLAAAILCGYVYQ--CP-PFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLV  197 (315)
T ss_pred             cChHHHHHHHHHHHHHHHHh--cC-CcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHH
Confidence            56889989999999999999  47 999999885  211111111          11          1233455667778


Q ss_pred             HHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366           64 VIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL  125 (178)
Q Consensus        64 ~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~  125 (178)
                      .+.+..+...||++|+|.||+.|+||+|+++|+|+++++...+...+|+..+........++
T Consensus       198 gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~  259 (315)
T PLN02922        198 GLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPL  259 (315)
T ss_pred             HHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            88999999999999999999999999999999999999999999999998877766654443

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.68  E-value=2.7e-15  Score=131.16  Aligned_cols=105  Identities=25%  Similarity=0.294  Sum_probs=78.5

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHHhc-------cc--ccchHHHHHHHHHHHHHHHHHHHHc
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIVLG-------NP--VAFTKPVLFTAAYLVIWNTAIAFVK   74 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~~G-------~~--~~~~~~~~~~~~f~~l~~~~~~i~~   74 (178)
                      +|..+...+++++++++||  .| |+++||+++.++   ...++       ..  ...+...+....+.++++.++++.|
T Consensus       196 ~~~~~~l~l~gi~l~~~YS--~p-Pl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivn  272 (375)
T PLN00012        196 FPIVFYLALGGSLLSYIYS--AP-PLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVN  272 (375)
T ss_pred             cHHHHHHHHHHHHHhhhhc--CC-chhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666677888899999  48 999999987655   11111       11  1223344444556678999999999


Q ss_pred             cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHH
Q 030366           75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGV  114 (178)
Q Consensus        75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~  114 (178)
                      |+||+||||+.|++|+|+++|+|++++++..++.+..+..
T Consensus       273 d~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~  312 (375)
T PLN00012        273 DFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSV  312 (375)
T ss_pred             hhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999876666555533

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.67  E-value=2.3e-15  Score=126.22  Aligned_cols=143  Identities=22%  Similarity=0.304  Sum_probs=96.0

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhccccc--chHHHHHHHHHHHHHHHHHHHHcc
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVA--FTKPVLFTAAYLVIWNTAIAFVKD   75 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~--~~~~~~~~~~f~~l~~~~~~i~~d   75 (178)
                      ++.......++.+.++.||.      ++||+|..++         +...|....  .+...+......++++.++++.||
T Consensus       103 ~~~~~~~~~~~~~~~~~Ys~------~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  176 (279)
T PRK12884        103 SPLAFLVVILVSVLGILYNW------KLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKD  176 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHHH------hhccccchhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666777888999992      3788776544         222232211  122344445567788899999999


Q ss_pred             CCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-hhCCCCChH
Q 030366           76 IPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQA-KTNDPSDNK  154 (178)
Q Consensus        76 i~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~-~~vd~~~~~  154 (178)
                      +||+|+||+.|+||+|+++|+|++.+++...+..+++..+........++   .+.....+....+.+++ +..+.+|++
T Consensus       177 ~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~  253 (279)
T PRK12884        177 IEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRE  253 (279)
T ss_pred             hhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            99999999999999999999999999988887777765544433322222   34445555556666665 566666655


Q ss_pred             HHHH
Q 030366          155 SAKS  158 (178)
Q Consensus       155 ~~~~  158 (178)
                      ..++
T Consensus       254 ~~~~  257 (279)
T PRK12884        254 TIRK  257 (279)
T ss_pred             HHHH
Confidence            4333

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.66  E-value=4.7e-15  Score=126.87  Aligned_cols=107  Identities=22%  Similarity=0.359  Sum_probs=79.9

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHHhcc-------c----ccchHHHHHHHHHHHHHHHHHHH
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIVLGN-------P----VAFTKPVLFTAAYLVIWNTAIAF   72 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~~G~-------~----~~~~~~~~~~~~f~~l~~~~~~i   72 (178)
                      +++.....+++.+++++||  .| |+++||++..++   ...+|.       .    ...+...+......++++.+++.
T Consensus       131 ~~~~~~l~l~~~~~~~~Yt--~g-P~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~  207 (314)
T PRK07566        131 GPWVFLAALLGLFLAWIYS--AP-PLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMT  207 (314)
T ss_pred             ChHHHHHHHHHHHHHHHhc--CC-ccccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4666777778888899999  47 899999885544   111211       1    11223344445556678888999


Q ss_pred             HccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHH
Q 030366           73 VKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVL  116 (178)
Q Consensus        73 ~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~  116 (178)
                      +||++|+|+||+.|+||+|+++|+|++.+++..++..+++..+.
T Consensus       208 ~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~  251 (314)
T PRK07566        208 LNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIA  251 (314)
T ss_pred             HHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888777776543

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.66  E-value=2.7e-15  Score=126.74  Aligned_cols=156  Identities=19%  Similarity=0.286  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccccc---hHHHHHHHHHHHHHHHHHHHHcc
Q 030366            8 PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVAF---TKPVLFTAAYLVIWNTAIAFVKD   75 (178)
Q Consensus         8 ~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~~---~~~~~~~~~f~~l~~~~~~i~~d   75 (178)
                      +..++....++++.+.|-       ++||.+.+.+         ...+|..+..   +.+.+....+..+|+.+++++||
T Consensus       116 ~~~~~l~~~~~~l~~~Y~-------~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~  188 (289)
T COG0382         116 PLAFLLSLAALVLALAYP-------FLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYA  188 (289)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HhhcCCchHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHh
Confidence            445566667788888883       5899887666         2223333322   45566666778899999999999


Q ss_pred             CCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHH
Q 030366           76 IPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKS  155 (178)
Q Consensus        76 i~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~  155 (178)
                      .||+|+||+.|++|+|+.+|+|++..++...+ ...+.....+.....  ....+..++.+....+.+|+..+|.++++.
T Consensus       189 ~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (289)
T COG0382         189 IQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGL--LGLIYLLGLLVAALLLLYQILIVDVRDPPA  265 (289)
T ss_pred             ccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhcccChHH
Confidence            99999999999999999999999999998888 333333333333221  113578888899999999999999998878


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 030366          156 AKSFYMLTWKLYCVEFFL  173 (178)
Q Consensus       156 ~~~~y~fiw~lf~~~~~~  173 (178)
                      ...++..-...-...++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~  283 (289)
T COG0382         266 CFALFDVNLLLGLLLFIG  283 (289)
T ss_pred             HHHHHHHhhHHHHHHHHH
Confidence            777777666555555443

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.64  E-value=1.4e-14  Score=122.54  Aligned_cols=103  Identities=16%  Similarity=0.240  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 030366           55 PVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISH  134 (178)
Q Consensus        55 ~~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~  134 (178)
                      ..+......++|+.+.+++|++||+|+||+.|+||+|+++|+|++.+++..++.+..+.....+......+   .+..+.
T Consensus       160 ~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~---~y~~~~  236 (284)
T PRK12888        160 PAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA---LWWIGL  236 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHH
Confidence            33444455678999999999999999999999999999999999999888887777766665555544333   456677


Q ss_pred             HHHHHHHHHhhhhCCCCChHHH-HHHH
Q 030366          135 SALAFVLWRQAKTNDPSDNKSA-KSFY  160 (178)
Q Consensus       135 ~i~~~~l~~~~~~vd~~~~~~~-~~~y  160 (178)
                      .+.+..+.+||+.+|++|.+.. +.|+
T Consensus       237 ~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        237 AITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            7888999999999999998765 4654

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.64  E-value=1.9e-14  Score=121.71  Aligned_cols=114  Identities=11%  Similarity=0.089  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHHccC
Q 030366            9 PLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PVAFTKPVLFTAAYLVIWNTAIAFVKDI   76 (178)
Q Consensus         9 ~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~i~~di   76 (178)
                      ++...++++.+.+++||.  | |.++|++|+  +.....+|.          ....+...+.......+.+..+...||+
T Consensus       110 ~~l~lg~~~~~~~~~Yt~--g-P~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~  186 (284)
T TIGR00751       110 WFIALGALCIAAAITYTV--G-SKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVDWVGILPAVATGLLACAVLNINNL  186 (284)
T ss_pred             HHHHHHHHHHHHhHhhcC--C-CCccccCchHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCc
Confidence            566777889999999994  7 889999873  222222321          1223334444455566788899999999


Q ss_pred             CChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Q 030366           77 PDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVL  125 (178)
Q Consensus        77 ~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~  125 (178)
                      +|+|+||++|+||+|+++|+|+++++...+...+|+..+........++
T Consensus       187 ~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~  235 (284)
T TIGR00751       187 RDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISW  235 (284)
T ss_pred             ccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence            9999999999999999999999999999999999987776655444333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.64  E-value=2.9e-14  Score=122.27  Aligned_cols=116  Identities=17%  Similarity=0.161  Sum_probs=87.0

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cccchHH------------------
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PVAFTKP------------------   55 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~~~~~~------------------   55 (178)
                      .+|+++..++++.+.++.||  .| |+++|++|+  +.....+|.          ....+..                  
T Consensus       112 ~g~~~l~igl~g~~~~~~Yt--~g-P~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~  188 (317)
T PRK13387        112 TSWLLLVIGLICFAIGILYT--GG-PLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAI  188 (317)
T ss_pred             hcHHHHHHHHHHHHHhhhhc--CC-CcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHH
Confidence            56888888999999999999  47 899999883  111112221          1111111                  


Q ss_pred             --HHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 030366           56 --VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSV  124 (178)
Q Consensus        56 --~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~  124 (178)
                        ++.......+.+..+.+.||++|+|+||++|+||+|+++|+|++.++...+...+|+..+........+
T Consensus       189 ~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp  259 (317)
T PRK13387        189 IAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYIS  259 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence              122556667788888999999999999999999999999999999999999999998777666554333

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.63  E-value=8e-15  Score=123.43  Aligned_cols=99  Identities=17%  Similarity=0.310  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 030366           56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHS  135 (178)
Q Consensus        56 ~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~  135 (178)
                      .+......++|+.+.+++||.||+|+|++.|++|+|+++|+|++.+.+...+.++++.....+......+   .+..+..
T Consensus       160 ~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y~~~~~  236 (282)
T TIGR01475       160 AWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IALLALI  236 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHH
Confidence            3444455678999999999999999999999999999999999999988888777776665555443322   4556666


Q ss_pred             HHHHHHHHhhhhCCCCChHHHH
Q 030366          136 ALAFVLWRQAKTNDPSDNKSAK  157 (178)
Q Consensus       136 i~~~~l~~~~~~vd~~~~~~~~  157 (178)
                      +....+.++++.+|++|+++.+
T Consensus       237 ~~~~~l~~~~~~~~~~~~~~~~  258 (282)
T TIGR01475       237 LIGLILAYEHYIVDPGDQSKIQ  258 (282)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHH
Confidence            6678899999999998877553

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.63  E-value=7.8e-15  Score=123.07  Aligned_cols=141  Identities=23%  Similarity=0.278  Sum_probs=86.7

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccccc---hHHHHHHHHHHHHHHHHHHHHc
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVAF---TKPVLFTAAYLVIWNTAIAFVK   74 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~~---~~~~~~~~~f~~l~~~~~~i~~   74 (178)
                      ++.......++.++.+.||   +   |+||+|..++         .+.+|.....   ....+......++++.+++++|
T Consensus       104 ~~~~~~~~~~~~~~~~~Yt---~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~~~~~~~~~l~~~~fl~~~~~~~~~  177 (276)
T PRK12882        104 PPLCLAIALFNSLLLVLYA---E---TLKGTPGLGNASVAYLTGSTFLFGGAAVGTEGLLALLVLFALAALATLAREIIK  177 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHH---H---HHhcccchhHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Confidence            3555555666777788999   2   6899887655         1223322111   1222333444567888999999


Q ss_pred             cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHhhhhCCCCCh
Q 030366           75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSA-LAFVLWRQAKTNDPSDN  153 (178)
Q Consensus        75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i-~~~~l~~~~~~vd~~~~  153 (178)
                      |+||+|+||+.|+||+|+++|+|++.+++...+....+...........  .. .+.....+ .+..+.+..+..|.+|+
T Consensus       178 ~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~--~~-~y~~~~~~~~~~~l~~~~~~~~~~~~  254 (276)
T PRK12882        178 DVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTF--GL-WYLVLVAPADLVMLAAAYRSLKKTDP  254 (276)
T ss_pred             hhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hH-HHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            9999999999999999999999999999877765554433322111111  11 23333322 23444445556666665


Q ss_pred             HHH
Q 030366          154 KSA  156 (178)
Q Consensus       154 ~~~  156 (178)
                      ++.
T Consensus       255 ~~~  257 (276)
T PRK12882        255 TAS  257 (276)
T ss_pred             HHH
Confidence            443

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.63  E-value=8.8e-15  Score=123.82  Aligned_cols=101  Identities=18%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q 030366           58 FTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSAL  137 (178)
Q Consensus        58 ~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~  137 (178)
                      ......++|+.+.|++++.||+|+||+.|+||+|+++|+|++.+++..++.++.......+....    ...+.++..+.
T Consensus       163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~----~~~y~~~~~~~  238 (286)
T PRK12895        163 IIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR----TLWYLAALIII  238 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHH
Confidence            33445679999999999999999999999999999999999998888888777776666664443    24577888999


Q ss_pred             HHHHHHhhhhCCCCChHHH-HH-HHHH
Q 030366          138 AFVLWRQAKTNDPSDNKSA-KS-FYML  162 (178)
Q Consensus       138 ~~~l~~~~~~vd~~~~~~~-~~-~y~f  162 (178)
                      +..+.+||+.+|++|.++. .+ |.+.
T Consensus       239 ~~~l~~q~~~~~~~~~~~~~~~~F~~N  265 (286)
T PRK12895        239 YTLVIYQHLIIDPRNPINKRMSFFNAN  265 (286)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHc
Confidence            9999999999999999887 54 4443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.61  E-value=1.2e-14  Score=123.87  Aligned_cols=100  Identities=14%  Similarity=0.241  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 030366           60 AAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAF  139 (178)
Q Consensus        60 ~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~  139 (178)
                      ....++|+.++|++||+||+|+||+.|+||+|+++| |++++++..++.++.......+......   ..+..+..+...
T Consensus       183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg---~~y~~~~~~~~~  258 (300)
T PRK13106        183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLG---PIAIAATILHGL  258 (300)
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHH
Confidence            334678999999999999999999999999999999 9999999888887777666665554432   256677778889


Q ss_pred             HHHHhhhhCCCCChHHHHHHHHHHH
Q 030366          140 VLWRQAKTNDPSDNKSAKSFYMLTW  164 (178)
Q Consensus       140 ~l~~~~~~vd~~~~~~~~~~y~fiw  164 (178)
                      .+.+||..++++ ++-.+.|.+..|
T Consensus       259 ~l~~~~~~~~~~-~~~~~~F~~n~~  282 (300)
T PRK13106        259 IMAYAYYLASKK-GDFGRAFYYNIY  282 (300)
T ss_pred             HHHHHHHHhCCc-hHHHHHHHHccH
Confidence            999999999988 555677766554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.60  E-value=3.2e-14  Score=120.59  Aligned_cols=146  Identities=18%  Similarity=0.097  Sum_probs=98.4

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccc---cch-HHHHHHHHHHHHHHHHHHHH
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPV---AFT-KPVLFTAAYLVIWNTAIAFV   73 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~---~~~-~~~~~~~~f~~l~~~~~~i~   73 (178)
                      ++..+....++.++...|+   .    .||+.....         +.+.|..+   ..+ ..........++|+.+.+.+
T Consensus       113 ~~~~~~l~~~~~~~~~~Y~---~----~KR~t~~~~~~lg~~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~  185 (289)
T PLN02809        113 NNYSRILGASSLLLVFTYP---L----MKRFTFWPQAFLGLTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTI  185 (289)
T ss_pred             hHHHHHHHHHHHHHHHHHh---H----HHhcCcchHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666777788888   2    677553322         11122111   112 22222334456789999999


Q ss_pred             ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCCh
Q 030366           74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDN  153 (178)
Q Consensus        74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~  153 (178)
                      ++.||+|+||+.|++|+|+++|+|+..+++ .++.+++......+......+   .+.+++.+.+..+.+|++.+|++|+
T Consensus       186 ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~  261 (289)
T PLN02809        186 YAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSR  261 (289)
T ss_pred             HHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999999999777766 466666666555555443322   4556888999999999999999998


Q ss_pred             HHH-HHHHHHH
Q 030366          154 KSA-KSFYMLT  163 (178)
Q Consensus       154 ~~~-~~~y~fi  163 (178)
                      ++. +.|.+..
T Consensus       262 ~~~~~~F~~n~  272 (289)
T PLN02809        262 ADCNRKFVSNK  272 (289)
T ss_pred             HHHHHHHHhCC
Confidence            876 4444433

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.59  E-value=8.9e-14  Score=117.51  Aligned_cols=101  Identities=21%  Similarity=0.431  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhCCCCCcccccchhhhhHHH----H----hcc---cccchHHHHHHHHHHHHHHHHHHHHccCCChHh
Q 030366           13 GFIIWCIVGGAYSIDLPPLLRWKGNPLMAAKI----V----LGN---PVAFTKPVLFTAAYLVIWNTAIAFVKDIPDVEG   81 (178)
Q Consensus        13 ~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~~~----~----~G~---~~~~~~~~~~~~~f~~l~~~~~~i~~di~Dieg   81 (178)
                      .++..++.+++||  .| |+|+|++|..+...    .    .+.   ....++..+...  .++++.+++++||+||+|+
T Consensus       118 ~ll~~i~~~~~YS--~p-P~rlk~~p~~~~~~~g~~~~~~~~~y~~~tg~~~~~~l~~a--~~l~~~~~~~in~i~Die~  192 (282)
T PRK12875        118 ALLAFLVLSVEYS--AP-PLRFKTTPVLDSLSNGLYILPGVAAYALVSGSLPPLLAVAG--GWLWAMGMHTFSAIPDIEP  192 (282)
T ss_pred             HHHHHHHHHHHHc--CC-CccchhccHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH--HHHHHHHHHHHHhccCHHH
Confidence            3455678899999  48 99999999765411    0    110   111233333333  3589999999999999999


Q ss_pred             hHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 030366           82 DKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVG  118 (178)
Q Consensus        82 Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~  118 (178)
                      ||+.|+||+|+++|+|++++++..++.++....+..+
T Consensus       193 D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        193 DRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888877666544

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.57  E-value=7.8e-14  Score=114.04  Aligned_cols=91  Identities=35%  Similarity=0.584  Sum_probs=67.6

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---HHH------hccccc---chHHHHHHHHHHHHHHHHHHHHc
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---KIV------LGNPVA---FTKPVLFTAAYLVIWNTAIAFVK   74 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---~~~------~G~~~~---~~~~~~~~~~f~~l~~~~~~i~~   74 (178)
                      +++.+....+..+.+.+||   | |.|+||+|..++   ...      .|....   .+...+....+.+++.......+
T Consensus        91 ~~~~~~~~~~~~~~~~~Ys---~-~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (257)
T PF01040_consen   91 GPWFLLILLLGFLLGLLYS---P-PLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFN  166 (257)
T ss_pred             CchhHHHHHHHHHHHHHHh---h-hhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            4666667777788889999   6 899999997655   111      111111   12334444445567777888889


Q ss_pred             cCCChHhhHhcCCcccceeeCHHHHHH
Q 030366           75 DIPDVEGDKAFGLRTLPIIIGKEKVFS  101 (178)
Q Consensus        75 di~DiegDr~~G~~Tlpv~lG~~~a~~  101 (178)
                      |++|+|+||+.|+||+|+++|+|+++.
T Consensus       167 ~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  167 DIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            999999999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.55  E-value=1.3e-13  Score=116.00  Aligned_cols=102  Identities=22%  Similarity=0.245  Sum_probs=71.3

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccccc-hHHHHHHHHHHHHHHHHHHHHccC
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVAF-TKPVLFTAAYLVIWNTAIAFVKDI   76 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~~-~~~~~~~~~f~~l~~~~~~i~~di   76 (178)
                      ++.......++.++.+.||   +   ++||++..++         ..+.|..... ....+......++|+.+++++||.
T Consensus       103 ~~~~~~l~~~~~~~~~~Ys---~---~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~  176 (279)
T PRK09573        103 NIYAFLIALLNSILLYLYA---K---DLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRIIILFLCAFFSTWSREIVKDI  176 (279)
T ss_pred             hHHHHHHHHHHHHHHHHHH---H---HHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4566666677777888999   2   4688765544         2222322111 122333344456888899999999


Q ss_pred             CChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHH
Q 030366           77 PDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGV  114 (178)
Q Consensus        77 ~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~  114 (178)
                      ||+|+||+.|++|+|+++|+|++.+++...+..+.+..
T Consensus       177 ~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~  214 (279)
T PRK09573        177 EDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLS  214 (279)
T ss_pred             hhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999876665554433

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.54  E-value=4.7e-13  Score=113.50  Aligned_cols=142  Identities=14%  Similarity=0.093  Sum_probs=92.4

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhcccc---cchHHHHHHHHHHHHHHHHHHHHc
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPV---AFTKPVLFTAAYLVIWNTAIAFVK   74 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~---~~~~~~~~~~~f~~l~~~~~~i~~   74 (178)
                      ++.......++.+....|+   .    .||+.....         +.+.|..+   ..+...+......++|+.+.++++
T Consensus       110 ~~~~~~l~~~~~~~~~~Y~---~----~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~  182 (291)
T PRK12886        110 NPLCLYLSPPALFFLLLYS---Y----CKRFTALAHVVLGFCLALAPLGAWIAIRGTIELPAILLGLAVLFWVAGFDILY  182 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHh---h----hhccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555666788898   2    466443222         11222211   122333444444678899999999


Q ss_pred             cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCCh-
Q 030366           75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDN-  153 (178)
Q Consensus        75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~-  153 (178)
                      ++||.|+||+.|+||+|+++|+|++.+........++......+......+   .+..+..+....+.++++.++++|+ 
T Consensus       183 a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~  259 (291)
T PRK12886        183 ALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLT  259 (291)
T ss_pred             HhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            999999999999999999999999999987776666665555554433222   3445555566666688899988874 


Q ss_pred             HHHHH
Q 030366          154 KSAKS  158 (178)
Q Consensus       154 ~~~~~  158 (178)
                      ++.++
T Consensus       260 ~~~~~  264 (291)
T PRK12886        260 RLDAA  264 (291)
T ss_pred             HHHHH
Confidence            34433

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.53  E-value=2.3e-13  Score=114.79  Aligned_cols=143  Identities=13%  Similarity=0.087  Sum_probs=94.2

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhh--HHHHhcc----c---ccchHHHHHHHHHHHHHHHHHHHHccCC
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMA--AKIVLGN----P---VAFTKPVLFTAAYLVIWNTAIAFVKDIP   77 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~--~~~~~G~----~---~~~~~~~~~~~~f~~l~~~~~~i~~di~   77 (178)
                      ++..+....++.+++..|+.    .-|.+..|.+.  ..+.++.    .   ...+...++.....++|+.+.+.++++|
T Consensus       113 ~~~~~~~~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~  188 (285)
T PRK12847        113 NKTTIYLSFIAVILIVLYPL----MKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQ  188 (285)
T ss_pred             hHHHHHHHHHHHHHHHhccc----cccCCcccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56677777788888999982    22333334221  1111111    1   1123344445555779999999999999


Q ss_pred             ChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHHHH
Q 030366           78 DVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAK  157 (178)
Q Consensus        78 DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~~~  157 (178)
                      |+|+|+++|++|+|+++|+|++.++........++..+........+    .+.++.++....+.+++..+|++|+++.+
T Consensus       189 D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~y~~~~~~~~~l~~~~~~~~~~~~~~~~  264 (285)
T PRK12847        189 DKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHN----IFYLAILAAAGIFYYQYKLLDFDNPANCM  264 (285)
T ss_pred             cHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999999999999998777655555444333222222    23345555667888999999988876543

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.53  E-value=4.2e-13  Score=114.20  Aligned_cols=113  Identities=19%  Similarity=0.265  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 030366           62 YLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVL  141 (178)
Q Consensus        62 f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l  141 (178)
                      ..++|+.++|++++.||+|+||+.|+||+|+++|+|++.+++...+.++.+.....+......+  ..+..+.++.+..+
T Consensus       180 ~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l  257 (300)
T PRK12876        180 SFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVIL  257 (300)
T ss_pred             HHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHH
Confidence            3557788999999999999999999999999999999988888888777776666665544332  23444554344444


Q ss_pred             -HHhh-hhCCCCChHHHHHHHH-HHH--HHHHHHHHhhhh
Q 030366          142 -WRQA-KTNDPSDNKSAKSFYM-LTW--KLYCVEFFLLHF  176 (178)
Q Consensus       142 -~~~~-~~vd~~~~~~~~~~y~-fiw--~lf~~~~~~~p~  176 (178)
                       .++| +.+|.++++.+.++++ ..|  ..+++..+..|.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~  297 (300)
T PRK12876        258 KTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFL  297 (300)
T ss_pred             HHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHc
Confidence             5666 7776555665555443 233  334444444443

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.52  E-value=5.4e-13  Score=113.17  Aligned_cols=108  Identities=19%  Similarity=0.164  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 030366           57 LFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSA  136 (178)
Q Consensus        57 ~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i  136 (178)
                      +......++|+.+.++++++||+|+||+.|++|+|+++|+|++.+.+...+..+.+.....+......   ..+..+..+
T Consensus       170 ~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  246 (291)
T PRK12874        170 VFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLG---LFAYLGVIV  246 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHH
Confidence            33344467999999999999999999999999999999999999887666655544444333332222   245567778


Q ss_pred             HHHHHHHhhhhCCCCChHHHHHHHHHHHHHHHHH
Q 030366          137 LAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCVE  170 (178)
Q Consensus       137 ~~~~l~~~~~~vd~~~~~~~~~~y~fiw~lf~~~  170 (178)
                      .+..+.++++.++.+|+++.+.|   -.-|.|..
T Consensus       247 ~~~~l~~~~~~~~~~~~~~~~~f---f~sn~~l~  277 (291)
T PRK12874        247 SALILLYEHYLVRKDFKKIDKAF---FTLNGYLG  277 (291)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHH---HHHHHHHH
Confidence            88899999999976666554443   34444444

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.52  E-value=1.1e-12  Score=111.15  Aligned_cols=162  Identities=16%  Similarity=0.155  Sum_probs=113.2

Q ss_pred             ccHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHHHhcc----------cccchHHHHHHHHHHHHHHHHHHHH
Q 030366            6 RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKIVLGN----------PVAFTKPVLFTAAYLVIWNTAIAFV   73 (178)
Q Consensus         6 ~~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~~~G~----------~~~~~~~~~~~~~f~~l~~~~~~i~   73 (178)
                      ++|..+..+.+++++|+.|+.  + |.++.+.|+  +.....+|.          +...+.......+...+.+..+...
T Consensus       119 s~~~~l~lG~l~~~~g~~YTg--G-p~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~a  195 (303)
T COG1575         119 SDWLVLLLGLLCIAAGILYTG--G-PFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLA  195 (303)
T ss_pred             hhhHHHHHHHHHHHheeeecc--C-CcCcccCCHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Confidence            467778888899999999995  4 556666663  333233332          2223445666677788888899999


Q ss_pred             ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhC----C
Q 030366           74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTN----D  149 (178)
Q Consensus        74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~v----d  149 (178)
                      |+++|+|.|++.|++|+|+++|+|+++.+...++..+|++.+...+....++...+    ..+......+..|.+    +
T Consensus       196 NNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll----~ll~~Pl~ir~~r~v~~~~~  271 (303)
T COG1575         196 NNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLL----FLLALPLAIRAARPVRQNQV  271 (303)
T ss_pred             cccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH----HHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999988776655554442222    233334444444444    2


Q ss_pred             CCChH---HHHHHHHHHHHHHHHHHHhh
Q 030366          150 PSDNK---SAKSFYMLTWKLYCVEFFLL  174 (178)
Q Consensus       150 ~~~~~---~~~~~y~fiw~lf~~~~~~~  174 (178)
                      |.+..   ...+.-+.+|.+.++..++.
T Consensus       272 ~~~~~p~l~~~~~~~~~~~~l~~~~i~~  299 (303)
T COG1575         272 PATLVPMLKNTVKANLLWNLLLAVGILL  299 (303)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222   35677788888877766554

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.52  E-value=2.3e-13  Score=115.30  Aligned_cols=150  Identities=16%  Similarity=0.156  Sum_probs=95.5

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH------HHHhccc---ccchHHHHHHHHHHHHHHHHHHHHccCC
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA------KIVLGNP---VAFTKPVLFTAAYLVIWNTAIAFVKDIP   77 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~------~~~~G~~---~~~~~~~~~~~~f~~l~~~~~~i~~di~   77 (178)
                      ++..+.....+.++...|+.    ..|.+..|-+..      ....|..   ...+...+......++|+.+.++++++|
T Consensus       114 ~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~  189 (290)
T PRK12870        114 NPLSFWLCVAAVPVIFLYPL----AKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMS  189 (290)
T ss_pred             hHHHHHHHHHHHHHHHHhhh----hhhccccceeeehHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455555566777788882    334555552211      2222211   1122334444455779999999999999


Q ss_pred             ChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhC--CCCChHH
Q 030366           78 DVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTN--DPSDNKS  155 (178)
Q Consensus        78 DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~v--d~~~~~~  155 (178)
                      |+|+|++.|++|+|+++|+|++.+++. ++.++.......+......+   .+..+..+....+.+|+.++  |.+|++.
T Consensus       190 D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~  265 (290)
T PRK12870        190 DREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLA  265 (290)
T ss_pred             hHhhHHHCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHH
Confidence            999999999999999999999998766 44444444444444433222   34566777888999999999  5556655


Q ss_pred             H-HHHHHHHH
Q 030366          156 A-KSFYMLTW  164 (178)
Q Consensus       156 ~-~~~y~fiw  164 (178)
                      . +.|++..|
T Consensus       266 ~~~~F~~n~~  275 (290)
T PRK12870        266 YGQLFLQNVW  275 (290)
T ss_pred             HHHHHHHhhH
Confidence            5 44444443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.52  E-value=2.8e-13  Score=114.20  Aligned_cols=140  Identities=15%  Similarity=0.155  Sum_probs=89.8

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhccc---ccchHHHHHHHHHHHHHHHHHHHHc
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNP---VAFTKPVLFTAAYLVIWNTAIAFVK   74 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~---~~~~~~~~~~~~f~~l~~~~~~i~~   74 (178)
                      ++........+.++.+.|+.       .||+.....         ..+.|..   ...+...+......++|+.+.+.++
T Consensus       108 ~~~~~~l~~~~~~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~  180 (281)
T TIGR01474       108 NPLTILLGVASLALVATYPF-------MKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLGYDTIY  180 (281)
T ss_pred             hHHHHHHHHHHHHHHHHhch-------hcccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777788888999982       455332211         1112211   1122333333444678999999999


Q ss_pred             cCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChH
Q 030366           75 DIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNK  154 (178)
Q Consensus        75 di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~  154 (178)
                      ++||+|+||+.|+||+|+++|+|++.+. ..++.++.......+......   ..+.++..+....+.+++..+|++|++
T Consensus       181 a~~D~e~D~~~G~~tlpv~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~  256 (281)
T TIGR01474       181 AMQDKEDDIKIGVKSTALRFGDNTKPWL-GGLYALMILLLALAGLIAGLG---PVYYLGLAAAALLLIRQIATLDIRDPE  256 (281)
T ss_pred             HHhhHHhHHHcCCCcccHHhhhhhHHHH-HHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999887554 344444333333333332221   235566667788889999999887776


Q ss_pred             HHH
Q 030366          155 SAK  157 (178)
Q Consensus       155 ~~~  157 (178)
                      +.+
T Consensus       257 ~~~  259 (281)
T TIGR01474       257 NCL  259 (281)
T ss_pred             HHH
Confidence            544

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.49  E-value=1.2e-12  Score=110.42  Aligned_cols=147  Identities=13%  Similarity=0.128  Sum_probs=94.3

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhh--H----HHHhcccc---cchHHHHHHHHHHHHHHHHHHHHccCC
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMA--A----KIVLGNPV---AFTKPVLFTAAYLVIWNTAIAFVKDIP   77 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~--~----~~~~G~~~---~~~~~~~~~~~f~~l~~~~~~i~~di~   77 (178)
                      ++........+.++.+.|+   . ..|.|..|.+.  .    ....|...   ..+...+......++|....+..+++|
T Consensus       110 ~~~~~~l~~~~~~~~~~Y~---~-~Kr~~~~~~~~~g~~~g~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~  185 (282)
T PRK12848        110 NTLTIWLSVAALALAWIYP---F-MKRYTHLPQVVLGAAFGWGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMV  185 (282)
T ss_pred             hHHHHHHHHHHHHHHHHHH---h-HHhcCcccHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455555566777788897   2 33444444221  1    11222111   123333444445678999999999999


Q ss_pred             ChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHHH-
Q 030366           78 DVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSA-  156 (178)
Q Consensus        78 DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~~-  156 (178)
                      |+|+||+.|++|+|+++|+|++.+.+ .++.+........+.....   ...+..+..+....+.++++.+|.+|+++. 
T Consensus       186 D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (282)
T PRK12848        186 DRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLALLAWAGWLLGL---GWAYYWGLLVAAALFVYQQKLIRDREREACF  261 (282)
T ss_pred             cHhhHHHcCCccccHHhccccHHHHH-HHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999999999999998876 3444444433333333222   224556677888889999999999887765 


Q ss_pred             HHHHH
Q 030366          157 KSFYM  161 (178)
Q Consensus       157 ~~~y~  161 (178)
                      +.|++
T Consensus       262 ~~F~~  266 (282)
T PRK12848        262 KAFLN  266 (282)
T ss_pred             HHHHh
Confidence            44444

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.46  E-value=3.5e-12  Score=109.29  Aligned_cols=146  Identities=15%  Similarity=0.070  Sum_probs=89.2

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhh--hhHHH----Hhcc---cccchHHHHHHHHHHHHHHHHHHHHccCC
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPL--MAAKI----VLGN---PVAFTKPVLFTAAYLVIWNTAIAFVKDIP   77 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~--~~~~~----~~G~---~~~~~~~~~~~~~f~~l~~~~~~i~~di~   77 (178)
                      +|..+...+++.++...|+   + .-|.+..|.  .+..+    +.|.   ....+...+......++|+...+.++++|
T Consensus       140 ~~~~~~l~~~~~~~~~~Y~---~-~KR~t~~~~~~~Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~  215 (314)
T PRK12878        140 NWFAIALGIASLAIVAAYP---F-MKRITWWPQFFLGLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQ  215 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHH---H-HHhcCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5667777778888899998   2 112233332  12111    1111   11122223333334668999999999999


Q ss_pred             ChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCCChHHHH
Q 030366           78 DVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPSDNKSAK  157 (178)
Q Consensus        78 DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~~~~~~~  157 (178)
                      |+|+||+.|++|+|+++|+|++.+......... ....+.......++   .+.++.......+.+|+.++|++|+++.+
T Consensus       216 D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  291 (314)
T PRK12878        216 DKEDDALIGVKSTARLFGDHTKTWLVLFYGLAV-LLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCL  291 (314)
T ss_pred             hHhhHHHcCCcccchHhchhhHHHHHHHHHHHH-HHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHH
Confidence            999999999999999999999998874443333 32222222222222   23344444455678889999888776644


Q ss_pred             HHH
Q 030366          158 SFY  160 (178)
Q Consensus       158 ~~y  160 (178)
                      +++
T Consensus       292 ~~F  294 (314)
T PRK12878        292 RLF  294 (314)
T ss_pred             HHH
Confidence            333

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.42  E-value=9.8e-12  Score=104.36  Aligned_cols=94  Identities=26%  Similarity=0.300  Sum_probs=63.8

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhHH---------HHhccccc--chHHHHHHHHHHHHHHHHHHHHcc
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAK---------IVLGNPVA--FTKPVLFTAAYLVIWNTAIAFVKD   75 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~~---------~~~G~~~~--~~~~~~~~~~f~~l~~~~~~i~~d   75 (178)
                      ++..+.....+.+.++.|+.      ++|+.+.+++.         .+.|....  .+...+.. .+.++++..+++.||
T Consensus       103 ~~~~~~~~~~~~~~~~~Y~~------~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~~~~~~-~~~fl~~~~~~~~~~  175 (277)
T PRK12883        103 NIEAFLFALGAYVLMFLYAW------KLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLA-ICAFLVNVAREIMKD  175 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhh------cccCCcchhhHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHHHHHHHHHHhh
Confidence            56666666777788999993      35665544431         11222111  12222222 224567778999999


Q ss_pred             CCChHhhHhcCCcccceeeCHHHHHHHHHHHH
Q 030366           76 IPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIM  107 (178)
Q Consensus        76 i~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~  107 (178)
                      +||+|+||+.|+||+|+++|+|+++++.....
T Consensus       176 ~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        176 IEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             hhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence            99999999999999999999999999876554

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.42  E-value=5.3e-12  Score=107.28  Aligned_cols=100  Identities=12%  Similarity=0.127  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 030366           61 AYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFV  140 (178)
Q Consensus        61 ~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~  140 (178)
                      ...++|+.+.++++++||.|.|++.|++|+|+++|+ ++......++.++.+.....+......+   .+..+..+.+..
T Consensus       177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~  252 (294)
T PRK12873        177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIG  252 (294)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHH
Confidence            446799999999999999999999999999999996 6666777787777776666676655433   566777888899


Q ss_pred             HHHhhhhCCCCCh--HH-HHHHHHHHH
Q 030366          141 LWRQAKTNDPSDN--KS-AKSFYMLTW  164 (178)
Q Consensus       141 l~~~~~~vd~~~~--~~-~~~~y~fiw  164 (178)
                      +.+||+.+|++|.  ++ .+.|++..|
T Consensus       253 l~~~~~~~~~~~~~~~~c~~~F~~n~~  279 (294)
T PRK12873        253 MQRDILKLFPEKQSIKTIGNHFSNQVI  279 (294)
T ss_pred             HHHHHHHhCcCcccHHHHHHHHHhccH
Confidence            9999999999873  33 477777665

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.42  E-value=7.7e-12  Score=106.43  Aligned_cols=99  Identities=11%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 030366           54 KPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMIS  133 (178)
Q Consensus        54 ~~~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g  133 (178)
                      ...+....+.++|+.+++.+||++|+|+|++.|+||+|+++|+|++.+.......+..+..+  +....  .........
T Consensus       175 ~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~~--~g~~~~~~~  250 (297)
T PRK12871        175 MTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLRE--LGPIALYGF  250 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHHH--hhHHHHHHH
Confidence            34455556678999999999999999999999999999999999999876655544443322  22222  222223333


Q ss_pred             HHHHHHHHHHhhhhCCCCChHHH
Q 030366          134 HSALAFVLWRQAKTNDPSDNKSA  156 (178)
Q Consensus       134 ~~i~~~~l~~~~~~vd~~~~~~~  156 (178)
                      ..+.+..+.+|.+..+.+|+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~  273 (297)
T PRK12871        251 LAGFVLLAGANLYLWKEKSQDAG  273 (297)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHH
Confidence            45666778888888888887764

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.21  E-value=1.2e-09  Score=92.03  Aligned_cols=150  Identities=14%  Similarity=0.114  Sum_probs=86.8

Q ss_pred             cHHHHHHHHHHHHH-HHHhhCCCCCcccccchhhhhH---------HHHhcccc---cchHHHHHHHHHHHHHHHHHHHH
Q 030366            7 SPPLVIGFIIWCIV-GGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPV---AFTKPVLFTAAYLVIWNTAIAFV   73 (178)
Q Consensus         7 ~~~l~~~~~~~~~l-g~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~---~~~~~~~~~~~f~~l~~~~~~i~   73 (178)
                      ++.......++.++ ...|+.  +    .||.+....         +...|...   ..+...+......++|.......
T Consensus       104 ~~~~~~l~~~~~~~~~~~Yt~--~----lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~  177 (280)
T TIGR01473       104 NPLAALLGLFGIFFYVIVYTI--W----LKRRTPQNTVIGGFAGAVPPLIGWAAVTGSISLGAWLLFAIIFLWQPPHFWA  177 (280)
T ss_pred             hHHHHHHHHHHHHHHHhhcCh--h----hccCCchhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555544 778882  3    577543311         11122111   12233333444456676665445


Q ss_pred             ccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhCCCC-C
Q 030366           74 KDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQAKTNDPS-D  152 (178)
Q Consensus        74 ~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~~~~vd~~-~  152 (178)
                      .+.+|+|.||+.|+||+|+++|+|++.+.....+..........+......  ...+..+..+....+.++++..|++ |
T Consensus       178 ~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~~~~~~~~~l~~~~~~~~~~~~  255 (280)
T TIGR01473       178 LALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTG--WLYLIVATLLGALFLYLAFKFYRDPTD  255 (280)
T ss_pred             HHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            568999999999999999999999999876666544444333333322222  2233355666777888888888877 4


Q ss_pred             hH-HHHHHHHHHH
Q 030366          153 NK-SAKSFYMLTW  164 (178)
Q Consensus       153 ~~-~~~~~y~fiw  164 (178)
                      ++ +.+.|+.-.+
T Consensus       256 ~~~~~~~f~~s~~  268 (280)
T TIGR01473       256 RKKARKLFKFSLI  268 (280)
T ss_pred             HHHHHHHHHHHHH
Confidence            33 3344444443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.16  E-value=1.9e-09  Score=91.54  Aligned_cols=107  Identities=16%  Similarity=0.151  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 030366           56 VLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHS  135 (178)
Q Consensus        56 ~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~  135 (178)
                      .++.....++|....+..+.++|.|-||+.|+||+|+++|+|++.+.+...+.+.....+.........+  .....+..
T Consensus       169 ~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~~~  246 (296)
T PRK04375        169 ALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL--LYLVVALL  246 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHH
Confidence            3444455678888888888899999999999999999999999998776655444443333322221112  22222445


Q ss_pred             HHHHHHHHhhhhCCCCChH-HHHHHHHHHH
Q 030366          136 ALAFVLWRQAKTNDPSDNK-SAKSFYMLTW  164 (178)
Q Consensus       136 i~~~~l~~~~~~vd~~~~~-~~~~~y~fiw  164 (178)
                      ..+..+.++++..+++|++ ..+.|+.-.|
T Consensus       247 ~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~  276 (296)
T PRK04375        247 LGAWFLYYAWRLYRKDDRKWARKLFRYSIN  276 (296)
T ss_pred             HHHHHHHHHHHHhcCcCHHHHHHHHHHHHH
Confidence            5667777888888876654 3345554444

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.14  E-value=4.1e-09  Score=88.83  Aligned_cols=109  Identities=10%  Similarity=0.120  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 030366           55 PVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISH  134 (178)
Q Consensus        55 ~~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~  134 (178)
                      ..+.....+++|..+.....+.+|.|.|++.|+||+|+++|+|++.+.....+.+........+. ...   ...+..+.
T Consensus       160 ~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~---g~~y~~~~  235 (279)
T PRK12869        160 EAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYI---GLIGLILV  235 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cHHHHHHH
Confidence            33444455667888876667889999999999999999999999998877666554443332222 111   12344333


Q ss_pred             HH-HHHHHHHhhhhCCCCChHHHHHHHHHHHHHHHH
Q 030366          135 SA-LAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCV  169 (178)
Q Consensus       135 ~i-~~~~l~~~~~~vd~~~~~~~~~~y~fiw~lf~~  169 (178)
                      .+ .+..+.++.+..+.+|+++  .+.+|.+.++|.
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~~~--~~~~f~~s~~~l  269 (279)
T PRK12869        236 AILSAALMATSIRALLNPTKEE--AWKMFKASSPYL  269 (279)
T ss_pred             HHHHHHHHHHHHHHhhCCChHH--HHHHHHHHHHHH
Confidence            33 3334444444454443332  334444444444

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.03  E-value=9.6e-09  Score=87.27  Aligned_cols=54  Identities=13%  Similarity=0.051  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHH
Q 030366           58 FTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGG  113 (178)
Q Consensus        58 ~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~  113 (178)
                      ......++.+.+||+.||++| |||+++ .+|+|+++|+|+|.+++..+..++.+.
T Consensus       179 ~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~  232 (299)
T PRK13592        179 LLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILT  232 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence            333456788999999999999 899965 999999999999999998887655543

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=98.86  E-value=1.8e-07  Score=80.11  Aligned_cols=80  Identities=24%  Similarity=0.299  Sum_probs=56.3

Q ss_pred             HHHHhhCCCCCcccccchhhhhH---------HHHhccccc---chHHHHHHHHHHHHHHHHHHHHccCCChHhhHhcCC
Q 030366           20 VGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVA---FTKPVLFTAAYLVIWNTAIAFVKDIPDVEGDKAFGL   87 (178)
Q Consensus        20 lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~---~~~~~~~~~~f~~l~~~~~~i~~di~DiegDr~~G~   87 (178)
                      ....|+      .++||++...+         +.+.|....   .+...+......++|+...+...+++|.|.|++.|+
T Consensus       130 ~~~~Yt------~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~  203 (306)
T PRK13362        130 YVGVYS------LYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGI  203 (306)
T ss_pred             HHHHHh------HHHhccCcHhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCC
Confidence            355777      24888765443         333443221   233444455557789988888899999999999999


Q ss_pred             cccceeeCHHHHHHHHHH
Q 030366           88 RTLPIIIGKEKVFSVAVN  105 (178)
Q Consensus        88 ~Tlpv~lG~~~a~~l~~~  105 (178)
                      +|+|+++|+|++.+....
T Consensus       204 ~~lpv~~G~~~t~~~~~~  221 (306)
T PRK13362        204 PVLPVARGIAKTKLHIVL  221 (306)
T ss_pred             eeeceecChHHHHHHHHH
Confidence            999999999999985433

>PLN02776 prenyltransferase

Probab=98.04  E-value=0.00039  Score=60.49  Aligned_cols=108  Identities=17%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHccCCChHhhHhcCCcccceee--CHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 030366           57 LFTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPIII--GKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISH  134 (178)
Q Consensus        57 ~~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~l--G~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~  134 (178)
                      ++.....++|...-...-..+|.|-|++.|++.+|+.-  |++.++.+....+.+..+.++........   ..++..+.
T Consensus       154 ~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~---~~~~~~a~  230 (341)
T PLN02776        154 MVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTS---SPFALEAA  230 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHH
Confidence            33333455777643445556777789999999999865  57777777766665555444433322222   23566777


Q ss_pred             HHHHHHHHHhhhhCCCCChHHHHHHHHHHHHHHHH
Q 030366          135 SALAFVLWRQAKTNDPSDNKSAKSFYMLTWKLYCV  169 (178)
Q Consensus       135 ~i~~~~l~~~~~~vd~~~~~~~~~~y~fiw~lf~~  169 (178)
                      .+.+..+.+.++..+++|++.  ...+|.+-+-|.
T Consensus       231 ~l~~~~l~~~~~~~~~~~~~~--ar~~F~~Sl~yL  263 (341)
T PLN02776        231 LLTAYLAASAASFYREPTNAN--ARKMFHGSLLYL  263 (341)
T ss_pred             HHHHHHHHHHHHHhcCCChHH--HHHHHHHHHHHH
Confidence            777888999999997766542  233444444443

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=97.42  E-value=0.00062  Score=56.37  Aligned_cols=104  Identities=14%  Similarity=0.205  Sum_probs=72.6

Q ss_pred             HHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Q 030366           65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLWRQ  144 (178)
Q Consensus        65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~~~  144 (178)
                      +-+-++..-|+-+|.|.||+.|+-|+++.+|+..+-.+...++.+.|..+...+.-+...+...+..+..+   .-+=.|
T Consensus       240 lnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~~lplltip~a---fqiek~  316 (359)
T KOG4581|consen  240 LNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISFALPLLTIPMA---FQIEKQ  316 (359)
T ss_pred             cchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhchhH---HhHHHH
Confidence            45556778899999999999999999999999999999888888889988888877776554444333333   222222


Q ss_pred             hhhCCC-CChHHHHHHHHHHHHHHHHHH
Q 030366          145 AKTNDP-SDNKSAKSFYMLTWKLYCVEF  171 (178)
Q Consensus       145 ~~~vd~-~~~~~~~~~y~fiw~lf~~~~  171 (178)
                      -|.-.. +...+-++...|..+.||+-.
T Consensus       317 frneqa~~~lp~qtakln~~~gi~yv~~  344 (359)
T KOG4581|consen  317 FRNEQAFHKLPQQTAKLNFFFGIFYVFA  344 (359)
T ss_pred             hhhHhhhhhcchhhhhHHHHHHHHHHHH
Confidence            222111 112345667778888888644

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=97.09  E-value=0.0014  Score=55.48  Aligned_cols=99  Identities=15%  Similarity=0.106  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCCcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIGKEKVFSVAVNIMLMAYGGVVLVGAFSPSVLCKLVTMISHSALAFVLW  142 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG~~~a~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~i~~~~l~  142 (178)
                      ...|+..-+.++.=||.+-|.+.|+++.+.++|++.-.++. ++-+.....+...|+.+...|   .+..+..+.+.=+.
T Consensus       233 ~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~  308 (353)
T KOG1381|consen  233 GVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTW---PYYAALGAVAARLG  308 (353)
T ss_pred             hhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHH
Confidence            45789889999999999999999999999999997766663 333333333344556665555   45555666677788


Q ss_pred             HhhhhCCCCChHHH-HHHHHHHHH
Q 030366          143 RQAKTNDPSDNKSA-KSFYMLTWK  165 (178)
Q Consensus       143 ~~~~~vd~~~~~~~-~~~y~fiw~  165 (178)
                      .+-..||.+|++.. +.|....|-
T Consensus       309 ~~i~~vdiDnp~dC~k~f~sN~nt  332 (353)
T KOG1381|consen  309 SQIYKVDIDNPSDCWKKFKSNSNT  332 (353)
T ss_pred             hheeeeecCChHHHHHHHHhcCcc
Confidence            88889999998865 455555553

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=94.39  E-value=0.64  Score=38.83  Aligned_cols=47  Identities=17%  Similarity=0.226  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIMLMA  110 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~~~~  110 (178)
                      .++...+-+++||+.|.|-|+++ +++=|..-|   .+.++..+..+..++
T Consensus        46 ~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~   95 (279)
T PRK12884         46 AFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILG   95 (279)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            44566677899999999999998 677787777   455555554444333

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=93.29  E-value=0.92  Score=38.75  Aligned_cols=54  Identities=15%  Similarity=0.091  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHccCCChHhhHhcCC-cccce-eeCHHHHHHHHHHHHHHHHHHHH
Q 030366           62 YLVIWNTAIAFVKDIPDVEGDKAFGL-RTLPI-IIGKEKVFSVAVNIMLMAYGGVV  115 (178)
Q Consensus        62 f~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv-~lG~~~a~~l~~~l~~~~~~~~i  115 (178)
                      ...+...+-+.+||.-|.|-|++.+. |.+|. ++.+|.+......+..++.+...
T Consensus        62 ~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~  117 (306)
T TIGR02056        62 SGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAF  117 (306)
T ss_pred             HHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            34566667799999999999987763 33333 35566666666655555544333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=93.05  E-value=1  Score=37.63  Aligned_cols=29  Identities=14%  Similarity=0.101  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHccCCChHhhHhcCC
Q 030366           59 TAAYLVIWNTAIAFVKDIPDVEGDKAFGL   87 (178)
Q Consensus        59 ~~~f~~l~~~~~~i~~di~DiegDr~~G~   87 (178)
                      .....++...+...+||..|.|-|+.+..
T Consensus        41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~~   69 (285)
T PRK12872         41 LLLITFLIAAAVYIINYLTDLEEDIINKP   69 (285)
T ss_pred             HHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence            33345567778889999999999987543

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=92.25  E-value=0.95  Score=38.71  Aligned_cols=48  Identities=23%  Similarity=0.410  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHccCCChHhhHhc---CCcccce-eeCHHHHHHHHHHHHHHHH
Q 030366           64 VIWNTAIAFVKDIPDVEGDKAF---GLRTLPI-IIGKEKVFSVAVNIMLMAY  111 (178)
Q Consensus        64 ~l~~~~~~i~~di~DiegDr~~---G~~Tlpv-~lG~~~a~~l~~~l~~~~~  111 (178)
                      ++...+..++||+-|.|-||++   ..|.+|. ++..+.+...+..+..++.
T Consensus        56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l  107 (295)
T PRK12324         56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASL  107 (295)
T ss_pred             HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence            3445566799999999999996   2234443 3455666666555544443

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=92.20  E-value=1.2  Score=37.51  Aligned_cols=46  Identities=20%  Similarity=0.182  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHccCCChHhhHhcCC---cccceeeC-HHHHHHHHHHHH
Q 030366           62 YLVIWNTAIAFVKDIPDVEGDKAFGL---RTLPIIIG-KEKVFSVAVNIM  107 (178)
Q Consensus        62 f~~l~~~~~~i~~di~DiegDr~~G~---~Tlpv~lG-~~~a~~l~~~l~  107 (178)
                      ..+....+..++||+.|.|-||++-.   |.+|.--- +|.+..+...+.
T Consensus        55 ~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~  104 (289)
T COG0382          55 AFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLL  104 (289)
T ss_pred             HHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHH
Confidence            34566667789999999999999876   44444332 333444443333

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=91.72  E-value=7.9  Score=33.38  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             hhHhcCCcccceeeCHHHHHHHHH
Q 030366           81 GDKAFGLRTLPIIIGKEKVFSVAV  104 (178)
Q Consensus        81 gDr~~G~~Tlpv~lG~~~a~~l~~  104 (178)
                      -=++.|+--+|++-|++.+++-..
T Consensus       202 DY~~AgiPMlPvv~G~~~t~~~I~  225 (304)
T COG0109         202 DYKAAGIPMLPVVKGERRTKRQIL  225 (304)
T ss_pred             HHHHcCCCcccccccHHHHHHHHH
Confidence            347899999999999999987643

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=90.64  E-value=2.1  Score=34.47  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHccCCChHhhHhc-CCcccceeeCHHH
Q 030366           64 VIWNTAIAFVKDIPDVEGDKAF-GLRTLPIIIGKEK   98 (178)
Q Consensus        64 ~l~~~~~~i~~di~DiegDr~~-G~~Tlpv~lG~~~   98 (178)
                      ++.....+..||.-|.|-|+.+ +.+.=|..-|+-+
T Consensus        33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            3566677899999999999996 3445555555444

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK08238 hypothetical protein; Validated

Probab=90.22  E-value=10  Score=34.56  Aligned_cols=74  Identities=20%  Similarity=0.353  Sum_probs=44.6

Q ss_pred             cHHHHHHHHHHHHHHHHhhCCCCCcccccchhhhhH---------HHHhccccc-chHHHHHHHHHHHHHHHHHHHHccC
Q 030366            7 SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAA---------KIVLGNPVA-FTKPVLFTAAYLVIWNTAIAFVKDI   76 (178)
Q Consensus         7 ~~~l~~~~~~~~~lg~~Ys~~lp~plrlK~~p~~~~---------~~~~G~~~~-~~~~~~~~~~f~~l~~~~~~i~~di   76 (178)
                      ++..+..++...++..+||      +++||.+.+..         ..+.|.... .+.+.|+.. +.+++....++.|..
T Consensus       294 ~~~~~~~~~~~~~~~~~Ys------~~lKr~~~~~~~~la~~~~lr~~~G~~a~~~~~s~wll~-~~~~~~l~la~~KR~  366 (479)
T PRK08238        294 GPAFLLVLLAYLALTLAYS------LRLKRKVLVDVLTLAALYTLRIIAGAAAIGVALSFWLLA-FSMFFFLSLALVKRY  366 (479)
T ss_pred             hHHHHHHHHHHHHHHHHhh------HHhcCCccccchHHHHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHHhH
Confidence            3444444455566667777      25899886544         333443322 223334332 333445567799999


Q ss_pred             CChHhhHhcCC
Q 030366           77 PDVEGDKAFGL   87 (178)
Q Consensus        77 ~DiegDr~~G~   87 (178)
                      .|.+++++.|.
T Consensus       367 ~El~~~~~~~~  377 (479)
T PRK08238        367 TELRRALQRGK  377 (479)
T ss_pred             HHHHHHHhcCC
Confidence            99999999886

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=89.87  E-value=3.5  Score=35.34  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=26.7

Q ss_pred             HHHHHHHH----HccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHH
Q 030366           65 IWNTAIAF----VKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIM  107 (178)
Q Consensus        65 l~~~~~~i----~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~  107 (178)
                      +...+.++    +||..|.|-||.+ +++-|+.=|   +|.++.+...+.
T Consensus        60 ~~~~~~nv~i~~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~~~  108 (308)
T PRK12887         60 IACLCGNVYIVGLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVIITG  108 (308)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHHHH
Confidence            34444456    9999999999964 577776444   455544444333

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=89.71  E-value=3.5  Score=34.53  Aligned_cols=48  Identities=19%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCCcccce---eeCHHHHHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPI---IIGKEKVFSVAVNIMLMAY  111 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~~  111 (178)
                      .++...+-+++||+-|.|-||+.. ++=|+   ++-+|.+......+..++.
T Consensus        46 ~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~   96 (279)
T PRK09573         46 VFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIVGL   96 (279)
T ss_pred             HHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence            445666778999999999999763 34444   3455666666555544443

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=89.18  E-value=3.1  Score=34.74  Aligned_cols=47  Identities=17%  Similarity=0.152  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIMLMA  110 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~~~~  110 (178)
                      .++...+-+++||.-|.|-|+++. ++=|..-|   +|.+......+..++
T Consensus        47 ~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g   96 (276)
T PRK12882         47 VFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAG   96 (276)
T ss_pred             HHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence            445566678999999999999754 55565555   555555555554443

>PRK13595 ubiA prenyltransferase; Provisional

Probab=89.01  E-value=5.8  Score=33.96  Aligned_cols=52  Identities=17%  Similarity=0.125  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHccCCChHhhHhcCCcccce---eeCHHHHHHHHHHHHHHH
Q 030366           58 FTAAYLVIWNTAIAFVKDIPDVEGDKAFGLRTLPI---IIGKEKVFSVAVNIMLMA  110 (178)
Q Consensus        58 ~~~~f~~l~~~~~~i~~di~DiegDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~  110 (178)
                      ....+..-.+...+.+||.-|.|-|+++-.+ =|.   ++.++.++.+...+...+
T Consensus        51 l~~~~~~p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~~~~~  105 (292)
T PRK13595         51 LLLYLTLPFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAVLLLN  105 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHHHHHH
Confidence            3344555666788999999999999866543 333   455565555544444333

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=88.66  E-value=3.2  Score=35.25  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCC-cccceeeCH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIGK   96 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG~   96 (178)
                      .++...+-..+||+.|.|-|++..+ ++=|..=|+
T Consensus        54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~   88 (289)
T PLN02809         54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA   88 (289)
T ss_pred             HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence            3455556689999999999998755 466766674

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=88.65  E-value=3.8  Score=34.35  Aligned_cols=44  Identities=23%  Similarity=0.074  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHccCCChHhhHhcC---Ccccce-eeCHHHHHHHHHH
Q 030366           62 YLVIWNTAIAFVKDIPDVEGDKAFG---LRTLPI-IIGKEKVFSVAVN  105 (178)
Q Consensus        62 f~~l~~~~~~i~~di~DiegDr~~G---~~Tlpv-~lG~~~a~~l~~~  105 (178)
                      ..++...+-.++||..|.|-|++..   .|.+|. ++.+|.+......
T Consensus        44 ~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~   91 (282)
T TIGR01475        44 AAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL   91 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHH
Confidence            3456677778999999999999863   344444 4556666665543

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=88.16  E-value=2.8  Score=35.22  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCC-cccceeeC---HHHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIG---KEKVFSVAVNIMLM  109 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG---~~~a~~l~~~l~~~  109 (178)
                      .++...+-+++||..|.|-|++..+ ++=|+.=|   .|.+..+...+..+
T Consensus        54 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~  104 (285)
T PRK12847         54 SVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLI  104 (285)
T ss_pred             HHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            3455566689999999999987543 23444444   55555554444433

>PRK08238 hypothetical protein; Validated

Probab=87.86  E-value=6.1  Score=36.02  Aligned_cols=50  Identities=20%  Similarity=0.304  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCC-cccce---eeCHHHHHHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPI---IIGKEKVFSVAVNIMLMAYG  112 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv---~lG~~~a~~l~~~l~~~~~~  112 (178)
                      +++...+..++||+-|.|-||++-+ +.=|.   ++..+.+..++..+..++..
T Consensus       235 ~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~  288 (479)
T PRK08238        235 FSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLA  288 (479)
T ss_pred             HHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3456667789999999999999732 33343   34556666665555544443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=87.70  E-value=6  Score=34.36  Aligned_cols=47  Identities=26%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             HHHHccCCChHhhHhcCCccccee---eCHHHHHHHHHHHHHHHHHHHHHH
Q 030366           70 IAFVKDIPDVEGDKAFGLRTLPII---IGKEKVFSVAVNIMLMAYGGVVLV  117 (178)
Q Consensus        70 ~~i~~di~DiegDr~~G~~Tlpv~---lG~~~a~~l~~~l~~~~~~~~i~~  117 (178)
                      -.++||.-|.|-|+..+ +|=|+.   +-+|.++.....+..++.+....+
T Consensus        66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L  115 (331)
T PRK12392         66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWL  115 (331)
T ss_pred             HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999764 444444   446777777666665555433333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=86.81  E-value=4.5  Score=34.03  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHccCCChHhhHhcCC-cccceeeC---HHHHHHHHHHHH
Q 030366           64 VIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIG---KEKVFSVAVNIM  107 (178)
Q Consensus        64 ~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG---~~~a~~l~~~l~  107 (178)
                      .+...+-+.+||+.|.|-|++..+ +.=|+.=|   ++.+......+.
T Consensus        50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~   97 (281)
T TIGR01474        50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQL   97 (281)
T ss_pred             HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHH
Confidence            345556689999999999986644 23444445   455555544443

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=86.72  E-value=5  Score=33.49  Aligned_cols=43  Identities=16%  Similarity=0.133  Sum_probs=28.8

Q ss_pred             HHHHHHHHHccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHHH
Q 030366           65 IWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIML  108 (178)
Q Consensus        65 l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~~  108 (178)
                      +...+-+++||.-|.|-|+.++ ++=|+.=|   ++.+......+..
T Consensus        48 ~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~   93 (277)
T PRK12883         48 LGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFA   93 (277)
T ss_pred             HHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence            3445668999999999999754 55566544   5566655544443

>PLN00012 chlorophyll synthetase; Provisional

Probab=86.24  E-value=8.8  Score=33.93  Aligned_cols=45  Identities=20%  Similarity=0.105  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCCcccceeeC---HHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPIIIG---KEKVFSVAVNIML  108 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv~lG---~~~a~~l~~~l~~  108 (178)
                      ..+...+-+++||.-|.|-|++++ ++=|+.=|   ++.+......+..
T Consensus       132 ~~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~  179 (375)
T PLN00012        132 GPFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLL  179 (375)
T ss_pred             HHHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHH
Confidence            334555678999999999998875 34444444   4555554434333

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=85.51  E-value=5.8  Score=33.98  Aligned_cols=46  Identities=17%  Similarity=0.116  Sum_probs=30.6

Q ss_pred             HHHHHHHHHccCCChHhhHhcCCcccce---eeCHHHHHHHHHHHHHHHH
Q 030366           65 IWNTAIAFVKDIPDVEGDKAFGLRTLPI---IIGKEKVFSVAVNIMLMAY  111 (178)
Q Consensus        65 l~~~~~~i~~di~DiegDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~~  111 (178)
                      +...+-+++||.-|.|-||+++ ++=|+   ++.++.++.....+..++.
T Consensus        76 l~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~~~  124 (314)
T PRK07566         76 LLCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVLGL  124 (314)
T ss_pred             HHHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence            4556678999999999999754 33343   4566666666655554443

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=85.41  E-value=5.4  Score=34.13  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCC-cccceeeC---HHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPIIIG---KEKVFSVAVNIM  107 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~lG---~~~a~~l~~~l~  107 (178)
                      .++...+-.++||+.|.|-||++.+ +.=|+.=|   ++.+..+...+.
T Consensus        53 ~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~  101 (294)
T PRK12873         53 GLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLL  101 (294)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            4456666689999999999998876 45565444   455555544443

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=85.22  E-value=5.6  Score=33.68  Aligned_cols=45  Identities=16%  Similarity=0.076  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCCc-ccceeeC---HHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGLR-TLPIIIG---KEKVFSVAVNIM  107 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~~-Tlpv~lG---~~~a~~l~~~l~  107 (178)
                      .++...+-.++||+.|.|-|++..+. .=|..=|   ++.+..+...+.
T Consensus        55 ~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~  103 (290)
T PRK12870         55 ALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVAL  103 (290)
T ss_pred             HHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHH
Confidence            34556666899999999999865432 3444444   455544444443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=85.05  E-value=8.2  Score=32.71  Aligned_cols=18  Identities=22%  Similarity=0.243  Sum_probs=15.7

Q ss_pred             HccCCChHhhHhcCCccc
Q 030366           73 VKDIPDVEGDKAFGLRTL   90 (178)
Q Consensus        73 ~~di~DiegDr~~G~~Tl   90 (178)
                      +||+-|.|.||.+.+|..
T Consensus        64 iND~~D~D~Dr~~prk~~   81 (282)
T PRK12875         64 VNDVFDADTDELNPKKDR   81 (282)
T ss_pred             chhhhhhhccccCCCccC
Confidence            799999999999887763

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=84.71  E-value=3.9  Score=34.24  Aligned_cols=47  Identities=17%  Similarity=0.014  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCCcccce---eeCHHHHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGLRTLPI---IIGKEKVFSVAVNIMLMA  110 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~~Tlpv---~lG~~~a~~l~~~l~~~~  110 (178)
                      ..+...+-+.+||.-|.|-|++++ ++=|+   ++-+|.++.....+..++
T Consensus        47 ~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~   96 (283)
T TIGR01476        47 GPLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG   96 (283)
T ss_pred             HHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            335566678999999999999765 33343   344566666655444433

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=83.95  E-value=7.2  Score=32.76  Aligned_cols=48  Identities=13%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCC---cccce-eeCHHHHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGL---RTLPI-IIGKEKVFSVAVNIMLMA  110 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~---~Tlpv-~lG~~~a~~l~~~l~~~~  110 (178)
                      ..+...+-+++||+.|.|-|+++.+   |.+|. ++.++.+......+..++
T Consensus        45 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~   96 (279)
T PRK12869         45 GTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALG   96 (279)
T ss_pred             HHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHH
Confidence            3455666789999999999998654   55554 345666666555443333

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=83.01  E-value=8.4  Score=32.37  Aligned_cols=47  Identities=17%  Similarity=0.274  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHccCCChHhhHhcCC-cccceee---CHHHHHHHHHHHHHHH
Q 030366           64 VIWNTAIAFVKDIPDVEGDKAFGL-RTLPIII---GKEKVFSVAVNIMLMA  110 (178)
Q Consensus        64 ~l~~~~~~i~~di~DiegDr~~G~-~Tlpv~l---G~~~a~~l~~~l~~~~  110 (178)
                      ++...+-+++||+.|.|-|++..+ +.=|+.=   -++.+......+..++
T Consensus        52 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~  102 (282)
T PRK12848         52 FLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA  102 (282)
T ss_pred             HHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            345556689999999999986443 2334433   4455555554444433

>PLN02776 prenyltransferase

Probab=80.23  E-value=23  Score=30.95  Aligned_cols=45  Identities=13%  Similarity=0.165  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHccCCChHhhHhcCC-cccce---eeCHHHHHHHHHHHH
Q 030366           63 LVIWNTAIAFVKDIPDVEGDKAFGL-RTLPI---IIGKEKVFSVAVNIM  107 (178)
Q Consensus        63 ~~l~~~~~~i~~di~DiegDr~~G~-~Tlpv---~lG~~~a~~l~~~l~  107 (178)
                      .++...+-..+||+.|.|-|++..+ +.=|+   ++..+.+..+...+.
T Consensus        38 ~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~   86 (341)
T PLN02776         38 TMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVG   86 (341)
T ss_pred             HHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            4455666689999999999988654 23333   345556655544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
3m0g_A	297	Farnesyl diphosphate synthase; structural genomics	80.51

>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A

Probab=80.51  E-value=1.1  Score=36.97  Aligned_cols=50  Identities=30%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHccCCChHh-----------hHhcCCcccceeeCHHHHHHHHHHHHHHH
Q 030366           61 AYLVIWNTAIAFVKDIPDVEG-----------DKAFGLRTLPIIIGKEKVFSVAVNIMLMA  110 (178)
Q Consensus        61 ~f~~l~~~~~~i~~di~Dieg-----------Dr~~G~~Tlpv~lG~~~a~~l~~~l~~~~  110 (178)
                      -|.--+..+..+..|+.|+.|           |.+.|+.|+|+.+|.+++...+.-...-+
T Consensus       203 ~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A  263 (297)
T 3m0g_A          203 AYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEA  263 (297)
T ss_dssp             HHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            344456677789999999987           45689999999999999998877765433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00