Citrus Sinensis ID: 030390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADEPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLVSLD
Secondary Structure (PSIPRED)
cccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccEEEcHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEccHHHHHHHHcccccHHHHHHHHHHccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccccHHHccccccccccEcccEEEEcccccccccccccccccccccccccccccccccccEEEEccccEHHcHHHHHHccccccccccEEEEEEHHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcc
Coil and Loop (DISEMBL)
maegggnsryvkltkeqtpveddikpgelnqpievpqlnvhrcnecgqplpedfeppadepwttgifgctedtescwtgffcpcvlfgrnvekmredtpwthpcichavcIEGGVALAAATAVfhgidprtsflICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLVSLD
Flexible Loop (DISEMBL)
maegggnsryvkltkeqtpveddikpgelnqpievpqLNVHRCNECGQPLPEDFEPPADEPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLVSLD
Low Complexity Region (SEG)
MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADEPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLVSLD
Disordered region (IsUnstruct)
**************************************NVHRCN****************PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLV***
Disordered Region (DISOPRED)
**************************GELNQPIEVPQLNVHRCNEC***************WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLVSLD
Disordered Region (DISEMBL)
********RYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADEPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLVSLD
Disordered Region (DISPRO)
********RYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADEPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLVSLD
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADEPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLVSLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	178	2.2.26 [Sep-21-2011]
B6SGC5	239	Cell number regulator 6 O	N/A	no	0.915	0.682	0.699	4e-66
Q8S8T8	190	Protein PLANT CADMIUM RES	no	no	0.595	0.557	0.314	2e-08
B4FF80	184	Cell number regulator 5 O	N/A	no	0.5	0.483	0.333	0.0003

>sp|B6SGC5|CNR6_MAIZE Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1

 Score =  250 bits (638), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 131/163 (80%)

Query: 2   AEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADEP 61
           A     SRYVKLTK+Q    +DI+PGELNQP+ VPQL   RC+ECGQ LPE +EPPADEP
Sbjct: 5   ATSSHPSRYVKLTKDQDAPAEDIRPGELNQPVHVPQLEGRRCSECGQVLPESYEPPADEP 64

Query: 62  WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAAT 121
           WTTGIFGCT+D E+C TG FCPCVLFGRNVE +RED PWT PC+CHAV +EGG+ LA  T
Sbjct: 65  WTTGIFGCTDDPETCRTGLFCPCVLFGRNVEAVREDIPWTTPCVCHAVFVEGGITLAILT 124

Query: 122 AVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           A+FHG+DPRTSFLI EGL F+WW+C  YTG  RQ LQ+KYHLK
Sbjct: 125 AIFHGVDPRTSFLIGEGLVFSWWLCATYTGIFRQGLQRKYHLK 167

Zea mays (taxid: 4577)

>sp|Q8S8T8|PCR10_ARATH Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana GN=PCR10 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 15/121 (12%)

Query: 55  EPPADEP--WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIE 112
           E   D+P  W++GI  C +D +SC  G FCPC +FG+N E +   T +  PC+ H  CI 
Sbjct: 38  ESTKDDPRQWSSGICACFDDMQSCCVGLFCPCYIFGKNAELLGSGT-FAGPCLTH--CIS 94

Query: 113 GGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFI 172
             +         +G     + L   G F + + CG      R++L+ KY+L+     +F+
Sbjct: 95  WALVNTICCFATNG-----ALLGLPGCFVSCYACG-----YRKSLRAKYNLQEAPCGDFV 144

Query: 173 T 173
           T
Sbjct: 145 T 145

May be involved in cadmium resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|B4FF80|CNR5_MAIZE Cell number regulator 5 OS=Zea mays GN=CNR5 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 62  WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAAT 121
           W++GI  C +D +SC  G  CPC LFG+N + +   T     C  H  C+  G+ L +  
Sbjct: 45  WSSGICACFDDPQSCCIGAICPCFLFGKNAQFLGSGT-LAGSCTTH--CMLWGL-LTSLC 100

Query: 122 AVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHL 163
            VF G       L   G   A + CG      R  L+ KY+L
Sbjct: 101 CVFTG----GLVLAVPGSAVACYACG-----YRSALRTKYNL 133

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
255539785	236	conserved hypothetical protein [Ricinus	0.915	0.690	0.841	6e-80
225466125	239	PREDICTED: cell number regulator 6 isofo	0.915	0.682	0.823	2e-77
224074653	234	predicted protein [Populus trichocarpa]	0.910	0.692	0.823	1e-74
225453496	238	PREDICTED: cell number regulator 6 [Viti	0.915	0.684	0.769	2e-71
297734552	277	unnamed protein product [Vitis vinifera]	0.915	0.588	0.769	5e-71
449460826	239	PREDICTED: cell number regulator 6-like	0.915	0.682	0.757	3e-70
18406687	244	PLAC8 family protein [Arabidopsis thalia	0.921	0.672	0.739	3e-69
11935197	238	unknown protein [Arabidopsis thaliana]	0.921	0.689	0.739	3e-69
297824537	244	hypothetical protein ARALYDRAFT_483631 [	0.921	0.672	0.733	7e-69
444247272	255	cell number regulator 12 [Prunus avium]	0.921	0.643	0.713	9e-68

>gi|255539785|ref|XP_002510957.1| conserved hypothetical protein [Ricinus communis] gi|223550072|gb|EEF51559.1| conserved hypothetical protein [Ricinus communis]

 Score =  301 bits (772), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 138/164 (84%), Positives = 152/164 (92%), Gaps = 1/164 (0%)

Query: 1   MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
           MAE   +SRYVKLTKEQ  +ED IKPGELNQPIEVPQLNV +CNECGQPLPE+FEPPADE
Sbjct: 2   MAEASAHSRYVKLTKEQAAIED-IKPGELNQPIEVPQLNVRKCNECGQPLPENFEPPADE 60

Query: 61  PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAA 120
           PWTTGIFGCTEDTESCWTG FCPCVLFGRNVE +R+DTPWT PCICHAVCIEGG+ALAAA
Sbjct: 61  PWTTGIFGCTEDTESCWTGLFCPCVLFGRNVESLRDDTPWTTPCICHAVCIEGGMALAAA 120

Query: 121 TAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           TA+FHG+DPRTSFL+CEGL FAWWMCGIYTG +RQ+LQ+KYHL+
Sbjct: 121 TAIFHGVDPRTSFLVCEGLLFAWWMCGIYTGLVRQSLQRKYHLR 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466125|ref|XP_002267975.1| PREDICTED: cell number regulator 6 isoform 1 [Vitis vinifera] gi|296084213|emb|CBI24601.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (750), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/164 (82%), Positives = 149/164 (90%), Gaps = 1/164 (0%)

Query: 1   MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
           MAEG  +SRYVKLTK+Q PVE+ IKPGELNQPI+VPQLNV +CNECGQPLPE +EPPA+E
Sbjct: 1   MAEGAVHSRYVKLTKDQGPVEE-IKPGELNQPIDVPQLNVRKCNECGQPLPESYEPPANE 59

Query: 61  PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAA 120
           PWTTGIFGC EDTESCWTG FCPCVLFGRN+E +REDTPWT PCICHA+CIEGG+ALA  
Sbjct: 60  PWTTGIFGCAEDTESCWTGLFCPCVLFGRNIESLREDTPWTTPCICHAICIEGGIALAIG 119

Query: 121 TAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           T VFHGIDPRTSFLICEGL FAWWMCGIYTG +RQ+LQKKYHL+
Sbjct: 120 TGVFHGIDPRTSFLICEGLLFAWWMCGIYTGLVRQSLQKKYHLQ 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074653|ref|XP_002304409.1| predicted protein [Populus trichocarpa] gi|222841841|gb|EEE79388.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/164 (82%), Positives = 148/164 (90%), Gaps = 2/164 (1%)

Query: 1   MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
           MAEG   SRYVKLTKEQT VE+ IKPGELNQPIEVP L V +CNECGQPLPE+F+PPADE
Sbjct: 1   MAEGNV-SRYVKLTKEQTGVEE-IKPGELNQPIEVPHLEVCKCNECGQPLPENFQPPADE 58

Query: 61  PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAA 120
           PWTTGIFGC EDTESCWTG FCPCVLFGRN+E +R+DTPWT PC+CHAVC+EGG+ALAAA
Sbjct: 59  PWTTGIFGCAEDTESCWTGLFCPCVLFGRNIESLRDDTPWTTPCVCHAVCVEGGIALAAA 118

Query: 121 TAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           TAVFHGI+P T FLICEGL FAWWMCGIYTG +RQ+LQKKYHLK
Sbjct: 119 TAVFHGINPDTPFLICEGLLFAWWMCGIYTGLVRQSLQKKYHLK 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453496|ref|XP_002277735.1| PREDICTED: cell number regulator 6 [Vitis vinifera]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 143/165 (86%), Gaps = 2/165 (1%)

Query: 1   MAEG-GGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPAD 59
           M+EG   +SRYVKL K+Q PVED I PGELNQPIEVPQL VHRCNECGQPLPE ++PPAD
Sbjct: 1   MSEGIAQSSRYVKLKKDQAPVED-ITPGELNQPIEVPQLIVHRCNECGQPLPESYQPPAD 59

Query: 60  EPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAA 119
           E WTTGI GC ED ESCWTG FCPCVLFG NVE++RED PWT+ C+CHA+C+EGG+ LAA
Sbjct: 60  EDWTTGICGCAEDRESCWTGLFCPCVLFGHNVEQLREDIPWTNACVCHALCVEGGMTLAA 119

Query: 120 ATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           ATA+FHGIDP+TSFLICEGL F WWMCGIYTG  RQ+LQK+YHLK
Sbjct: 120 ATALFHGIDPKTSFLICEGLLFTWWMCGIYTGLFRQSLQKQYHLK 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734552|emb|CBI16603.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (695), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 143/165 (86%), Gaps = 2/165 (1%)

Query: 1   MAEG-GGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPAD 59
           M+EG   +SRYVKL K+Q PVED I PGELNQPIEVPQL VHRCNECGQPLPE ++PPAD
Sbjct: 40  MSEGIAQSSRYVKLKKDQAPVED-ITPGELNQPIEVPQLIVHRCNECGQPLPESYQPPAD 98

Query: 60  EPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAA 119
           E WTTGI GC ED ESCWTG FCPCVLFG NVE++RED PWT+ C+CHA+C+EGG+ LAA
Sbjct: 99  EDWTTGICGCAEDRESCWTGLFCPCVLFGHNVEQLREDIPWTNACVCHALCVEGGMTLAA 158

Query: 120 ATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           ATA+FHGIDP+TSFLICEGL F WWMCGIYTG  RQ+LQK+YHLK
Sbjct: 159 ATALFHGIDPKTSFLICEGLLFTWWMCGIYTGLFRQSLQKQYHLK 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460826|ref|XP_004148145.1| PREDICTED: cell number regulator 6-like [Cucumis sativus] gi|449515997|ref|XP_004165034.1| PREDICTED: cell number regulator 6-like isoform 1 [Cucumis sativus] gi|449515999|ref|XP_004165035.1| PREDICTED: cell number regulator 6-like isoform 2 [Cucumis sativus]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/165 (75%), Positives = 140/165 (84%), Gaps = 2/165 (1%)

Query: 1   MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
           M +G   SRYVKL K+Q P+E+ IKPGELNQPI+VPQLNV +CNECGQPLPE FEPPADE
Sbjct: 1   MGDGAAPSRYVKLKKDQAPLEE-IKPGELNQPIDVPQLNVRKCNECGQPLPESFEPPADE 59

Query: 61  PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMR-EDTPWTHPCICHAVCIEGGVALAA 119
           PWTTGIFGC ED +SCWTG FCPCVLFGRNVE +R +D  WT PC+CHA+ +EGG+ALA 
Sbjct: 60  PWTTGIFGCAEDPQSCWTGLFCPCVLFGRNVESLRDDDMEWTRPCVCHAIFVEGGIALAT 119

Query: 120 ATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           ATA FH IDP TSFLICEGL F WWMCGIYTG +RQ+LQKKYHLK
Sbjct: 120 ATAAFHCIDPNTSFLICEGLLFTWWMCGIYTGLVRQSLQKKYHLK 164

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406687|ref|NP_566033.1| PLAC8 family protein [Arabidopsis thaliana] gi|21539477|gb|AAM53291.1| unknown protein [Arabidopsis thaliana] gi|21592976|gb|AAM64925.1| unknown [Arabidopsis thaliana] gi|23198304|gb|AAN15679.1| unknown protein [Arabidopsis thaliana] gi|24030247|gb|AAN41299.1| unknown protein [Arabidopsis thaliana] gi|26451758|dbj|BAC42974.1| unknown protein [Arabidopsis thaliana] gi|330255402|gb|AEC10496.1| PLAC8 family protein [Arabidopsis thaliana]

 Score =  266 bits (680), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/165 (73%), Positives = 141/165 (85%), Gaps = 1/165 (0%)

Query: 1   MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
           MA+G  +SRYVKL KEQ PVE+DI PGELNQPI+VPQLNV +C+EC Q LPE +EPP+DE
Sbjct: 1   MADGNASSRYVKLRKEQAPVEEDITPGELNQPIDVPQLNVRKCHECMQVLPETYEPPSDE 60

Query: 61  PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAA 120
            WTTGIFGC ED ESC TG FCPCVLFGRN+E +RE+ PWT PC+CHAVC+EGG+ALAA 
Sbjct: 61  NWTTGIFGCAEDPESCRTGLFCPCVLFGRNIEAVREEIPWTQPCVCHAVCVEGGMALAAV 120

Query: 121 TAVFHG-IDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           TA+F G IDP+T+ +ICEGLFFAWWMCGIY+G  RQ LQKKYHLK
Sbjct: 121 TALFSGYIDPQTTVVICEGLFFAWWMCGIYSGLFRQELQKKYHLK 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11935197|gb|AAG42014.1|AF327424_1 unknown protein [Arabidopsis thaliana]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/165 (73%), Positives = 141/165 (85%), Gaps = 1/165 (0%)

Query: 1   MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
           MA+G  +SRYVKL KEQ PVE+DI PGELNQPI+VPQLNV +C+EC Q LPE +EPP+DE
Sbjct: 1   MADGNASSRYVKLRKEQAPVEEDITPGELNQPIDVPQLNVRKCHECMQVLPETYEPPSDE 60

Query: 61  PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAA 120
            WTTGIFGC ED ESC TG FCPCVLFGRN+E +RE+ PWT PC+CHAVC+EGG+ALAA 
Sbjct: 61  NWTTGIFGCAEDPESCRTGLFCPCVLFGRNIEAVREEIPWTQPCVCHAVCVEGGMALAAV 120

Query: 121 TAVFHG-IDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           TA+F G IDP+T+ +ICEGLFFAWWMCGIY+G  RQ LQKKYHLK
Sbjct: 121 TALFSGYIDPQTTVVICEGLFFAWWMCGIYSGLFRQELQKKYHLK 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824537|ref|XP_002880151.1| hypothetical protein ARALYDRAFT_483631 [Arabidopsis lyrata subsp. lyrata] gi|297325990|gb|EFH56410.1| hypothetical protein ARALYDRAFT_483631 [Arabidopsis lyrata subsp. lyrata]

 Score =  265 bits (676), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 121/165 (73%), Positives = 140/165 (84%), Gaps = 1/165 (0%)

Query: 1   MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
           MA+G   SRYVKL KEQ PVE+DI PGELNQPI+VPQLNV +C+EC Q LPE +EPP+DE
Sbjct: 1   MADGNAASRYVKLRKEQAPVEEDITPGELNQPIDVPQLNVRKCHECMQVLPETYEPPSDE 60

Query: 61  PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAA 120
            WTTGIFGC ED ESC TG FCPCVLFGRN+E +RE+ PWT PC+CHA+C+EGG+ALAA 
Sbjct: 61  NWTTGIFGCAEDPESCRTGLFCPCVLFGRNIEAVREEIPWTQPCVCHAICVEGGMALAAV 120

Query: 121 TAVFHG-IDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           TA+F G IDP+T+ +ICEGLFFAWWMCGIY+G  RQ LQKKYHLK
Sbjct: 121 TALFSGYIDPQTTVVICEGLFFAWWMCGIYSGLFRQELQKKYHLK 165

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444247272|gb|AGD94948.1| cell number regulator 12 [Prunus avium] gi|444247274|gb|AGD94949.1| cell number regulator 12 [Prunus avium] gi|444247276|gb|AGD94950.1| cell number regulator 12 [Prunus avium]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 117/164 (71%), Positives = 135/164 (82%)

Query: 1   MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
           MA+G   SRYVKLT+EQ    +DI PGELNQPI++PQL V +C ECGQPLPE ++PPADE
Sbjct: 1   MADGNPQSRYVKLTREQEAPTEDITPGELNQPIQIPQLIVDKCAECGQPLPERYQPPADE 60

Query: 61  PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAA 120
            WTTGIFGC ED  SCWTG FCPCVLFGRNVE +RED PW + C+CHA+C+EGG+A+AAA
Sbjct: 61  EWTTGIFGCAEDPGSCWTGLFCPCVLFGRNVETIREDIPWNNACVCHAMCVEGGIAVAAA 120

Query: 121 TAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
           T  FHG+DP+TS LICE L FAWWMC IYTG  RQ+LQKKYHLK
Sbjct: 121 TGFFHGLDPKTSVLICETLLFAWWMCAIYTGLFRQSLQKKYHLK 164

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	178
TAIR|locus:2055617	244	AT2G45010 "AT2G45010" [Arabido	0.921	0.672	0.739	5.5e-70
TAIR|locus:2163700	241	AT5G51400 "AT5G51400" [Arabido	0.915	0.676	0.678	4.3e-61
TAIR|locus:505006313	190	AT2G40935 "AT2G40935" [Arabido	0.595	0.557	0.322	1.3e-11
TAIR|locus:2095002	133	AT3G18470 "AT3G18470" [Arabido	0.174	0.233	0.516	1e-05
ASPGD|ASPL0000061958	131	AN0759 [Emericella nidulans (t	0.196	0.267	0.314	0.00063

TAIR|locus:2055617 AT2G45010 "AT2G45010" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 122/165 (73%), Positives = 141/165 (85%)

Query:     1 MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
             MA+G  +SRYVKL KEQ PVE+DI PGELNQPI+VPQLNV +C+EC Q LPE +EPP+DE
Sbjct:     1 MADGNASSRYVKLRKEQAPVEEDITPGELNQPIDVPQLNVRKCHECMQVLPETYEPPSDE 60

Query:    61 PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAA 120
              WTTGIFGC ED ESC TG FCPCVLFGRN+E +RE+ PWT PC+CHAVC+EGG+ALAA 
Sbjct:    61 NWTTGIFGCAEDPESCRTGLFCPCVLFGRNIEAVREEIPWTQPCVCHAVCVEGGMALAAV 120

Query:   121 TAVFHG-IDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
             TA+F G IDP+T+ +ICEGLFFAWWMCGIY+G  RQ LQKKYHLK
Sbjct:   121 TALFSGYIDPQTTVVICEGLFFAWWMCGIYSGLFRQELQKKYHLK 165

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2163700 AT5G51400 "AT5G51400" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 112/165 (67%), Positives = 127/165 (76%)

Query:     1 MAEGGGNSRYVKLTKEQTPVEDDIKPGELNQPIEVPQLNVHRCNECGQPLPEDFEPPADE 60
             M++GG  SRYVKLTKEQ PV D+I PGELNQPIEV  L VH+CNECGQPLPE+FE PADE
Sbjct:     2 MSDGGAPSRYVKLTKEQAPV-DEIHPGELNQPIEVSHLAVHKCNECGQPLPENFEAPADE 60

Query:    61 PWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMR-EDTPWTHPCICHAVCIEGGVALAA 119
             PWTTGIFGCTED  S W G FCP VLFGR  E +  E+T W   CICH++ +EGG+  A+
Sbjct:    61 PWTTGIFGCTEDMNSFWLGLFCPSVLFGRVYETLSDEETSWKKACICHSIVVEGGLTAAS 120

Query:   120 ATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
               A   GIDP TS LI EGL F WWMCGIYTGN+RQ LQ+KYHL+
Sbjct:   121 MLACVPGIDPHTSLLIWEGLLFVWWMCGIYTGNVRQTLQRKYHLQ 165

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006313 AT2G40935 "AT2G40935" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 39/121 (32%), Positives = 61/121 (50%)

Query:    55 EPPADEP--WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIE 112
             E   D+P  W++GI  C +D +SC  G FCPC +FG+N E +   T +  PC+ H  CI 
Sbjct:    38 ESTKDDPRQWSSGICACFDDMQSCCVGLFCPCYIFGKNAELLGSGT-FAGPCLTH--CIS 94

Query:   113 GGVALAAATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFI 172
               +         +G     + L   G F + + CG Y    R++L+ KY+L+     +F+
Sbjct:    95 WALVNTICCFATNG-----ALLGLPGCFVSCYACG-Y----RKSLRAKYNLQEAPCGDFV 144

Query:   173 T 173
             T
Sbjct:   145 T 145

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2095002 AT3G18470 "AT3G18470" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query:    59 DEPWTTGIFGCTEDTESCWTGFFCPCVLFGR 89
             ++ WT+G+F C ED+E+     FCPCV FGR
Sbjct:     2 EKQWTSGLFSCMEDSETACLTCFCPCVTFGR 32

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000061958 AN0759 [Emericella nidulans (taxid:162425)]

 Score = 93 (37.8 bits), Expect = 0.00063, P = 0.00063
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query:    62 WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMRE 96
             WT  ++GC    E+C+  + CPC+++G+  E++++
Sbjct:     5 WTNSVWGCFSPIETCFMSWCCPCMVYGKQSERLQD 39


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.141   0.482    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      178       178   0.00086  109 3  12 22  0.40    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  140 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.23u 0.13s 13.36t   Elapsed:  00:00:00
  Total cpu time:  13.23u 0.13s 13.36t   Elapsed:  00:00:00
  Start:  Fri May 10 23:09:48 2013   End:  Fri May 10 23:09:48 2013

GO:0008150 "biological_process" evidence=ND

GO:0005576 "extracellular region" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	178
TIGR01571	104	TIGR01571, A_thal_Cys_rich, uncharacterized Cys-ri	4e-13
pfam04749	99	pfam04749, PLAC8, PLAC8 family	1e-11

>gnl|CDD|233473 TIGR01571, A_thal_Cys_rich, uncharacterized Cys-rich domain

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 28/104 (26%)

Query: 60  EPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAA 119
             W+TG+F C ED   C  G FCPC LFG+  E +               C+ GG+   A
Sbjct: 1   SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLG---------TFAGECLCGGLTAIA 51

Query: 120 ATAVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHL 163
            +A            +C         CG YT  +R  L++KY +
Sbjct: 52  MSA------------LC-------GFCGCYTCFIRIKLREKYGI 76

This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family. Length = 104

>gnl|CDD|218240 pfam04749, PLAC8, PLAC8 family

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 29/103 (28%)

Query: 62  WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAAT 121
           W+TG+F C +D  +C  G FCPC+LFGR  E++ + +       C    + G +      
Sbjct: 1   WSTGLFDCFDDIGTCCLGLFCPCILFGRTAERLDDGSRSEDGSCCLYGLLYGLLG----- 55

Query: 122 AVFHGIDPRTSFLICEGLFFAWWMCGIYTGNLRQNLQKKYHLK 164
                                     +Y+   R  +++KY+++
Sbjct: 56  ------------------------FWLYSCFTRTKIREKYNIE 74

This family includes the Placenta-specific gene 8 protein. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	178
TIGR01571	104	A_thal_Cys_rich uncharacterized Cys-rich domain. T	99.9
PF04749	106	PLAC8: PLAC8 family; InterPro: IPR006461 This grou	99.82

>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain

Probab=99.90  E-value=9.1e-25  Score=163.44  Aligned_cols=88  Identities=35%  Similarity=0.750  Sum_probs=68.9

Q ss_pred             CCCCcCcccccCCcccchhhcccchhhhhHHHhhhcCCCCCCCCccccchhcchhHHHHHhhhHhhccCCCcchhhhccc
Q 030390           60 EPWTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTHPCICHAVCIEGGVALAAATAVFHGIDPRTSFLICEGL  139 (178)
Q Consensus        60 ~~WstGLcdC~~D~~~C~~~~fCPCv~fG~n~erl~~~~~~~~~C~~~~~~~~Gg~~~~~~~~~f~~v~~~~~~l~~~gl  139 (178)
                      ++|++|||||++|+++|++++||||++||||++|++++.   .+|.      ..++.+++++.+ +              
T Consensus         1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~---~~C~------~~~~~~~~~~~~-~--------------   56 (104)
T TIGR01571         1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFA---GECL------CGGLTAIAMSAL-C--------------   56 (104)
T ss_pred             CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCC---Cchh------hHHHHHHHHHHH-H--------------
Confidence            589999999999999999999999999999999999642   4563      223322222111 0              


Q ss_pred             hhhhccccccchHHHHHHHHHhCCCCCCcccceeee
Q 030390          140 FFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLV  175 (178)
Q Consensus       140 ~f~w~~~~i~~~~~R~~iR~kYgI~Gs~c~Dcl~~~  175 (178)
                          +++++|.+.+|++||+||||+||+++|++++.
T Consensus        57 ----~~~~~~~~~~R~~~R~ry~i~gs~~~D~~~~~   88 (104)
T TIGR01571        57 ----GFCGCYTCFIRIKLREKYGIQGAPCDDCLTHL   88 (104)
T ss_pred             ----hHHHHHHHHHHHHHHHHhCCCCCCcccchHHH
Confidence                13347889999999999999999999998764

This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.

>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids

Probab=99.82  E-value=7.5e-21  Score=139.85  Aligned_cols=88  Identities=25%  Similarity=0.485  Sum_probs=64.9

Q ss_pred             CCcCcccccCCcccchhhcccchhhhhHHHhhhcCCCCCCC----CccccchhcchhHHHHHhhhHhhccCCCcchhhhc
Q 030390           62 WTTGIFGCTEDTESCWTGFFCPCVLFGRNVEKMREDTPWTH----PCICHAVCIEGGVALAAATAVFHGIDPRTSFLICE  137 (178)
Q Consensus        62 WstGLcdC~~D~~~C~~~~fCPCv~fG~n~erl~~~~~~~~----~C~~~~~~~~Gg~~~~~~~~~f~~v~~~~~~l~~~  137 (178)
                      |++|||||++|+++|++++||||+++++|++|++.+..+.+    +|.       +   ...   ++..           
T Consensus         1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~-------~---~~~---~~~~-----------   56 (106)
T PF04749_consen    1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCC-------L---CFC---CFGC-----------   56 (106)
T ss_pred             CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHH-------H---HHH---HHHH-----------
Confidence            99999999999999999999999999999999998643322    221       0   000   0000           


Q ss_pred             cchhhhccccccchHHHHHHHHHhCCCCCCcccceeee
Q 030390          138 GLFFAWWMCGIYTGNLRQNLQKKYHLKVINLLEFITLV  175 (178)
Q Consensus       138 gl~f~w~~~~i~~~~~R~~iR~kYgI~Gs~c~Dcl~~~  175 (178)
                       ..+. ++.++|++..|++||+||||+|+.++||+++.
T Consensus        57 -~~~~-~l~~~~~~~~R~~iR~ry~I~g~~~~D~~~~~   92 (106)
T PF04749_consen   57 -AACL-GLGWCYGCSLRQQIRERYGIQGSCCEDCCCSC   92 (106)
T ss_pred             -HHHH-HHhHhhhhhHHHHHHHHhCCCCCChhhhHHHH
Confidence             0000 12335888999999999999999999998763

These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	178
1kil_E	49	Complexin I snare-complex binding region; helix bo	83.74
3rk3_E	63	Complexin-1; snare proteins, membrane fusion, memb	82.67
1l4a_E	79	Synaphin A; snare, snare complex, membrane fusion,	80.64

>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1

Probab=83.74  E-value=0.49  Score=30.02  Aligned_cols=11  Identities=36%  Similarity=0.842  Sum_probs=10.2

Q ss_pred             HHHHHHHHhCC
Q 030390          153 LRQNLQKKYHL  163 (178)
Q Consensus       153 ~R~~iR~kYgI  163 (178)
                      +|+.||.||||
T Consensus        39 mRq~IRdKY~i   49 (49)
T 1kil_E           39 MRQGIRDKYGI   49 (49)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHhcCC
Confidence            69999999998

>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g

Probab=82.67  E-value=0.59  Score=31.01  Aligned_cols=13  Identities=38%  Similarity=0.726  Sum_probs=11.2

Q ss_pred             HHHHHHHHhCCCC
Q 030390          153 LRQNLQKKYHLKV  165 (178)
Q Consensus       153 ~R~~iR~kYgI~G  165 (178)
                      +|+.||.||||+-
T Consensus        42 mRQ~IRdKY~ikK   54 (63)
T 3rk3_E           42 VRQGIRDKYGIKK   54 (63)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHhccch
Confidence            6999999999973

>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=80.64  E-value=0.74  Score=31.82  Aligned_cols=13  Identities=46%  Similarity=0.784  Sum_probs=11.1

Q ss_pred             HHHHHHHHhCCCC
Q 030390          153 LRQNLQKKYHLKV  165 (178)
Q Consensus       153 ~R~~iR~kYgI~G  165 (178)
                      +|+.||.||||+-
T Consensus        46 mRq~IRdKY~ikK   58 (79)
T 1l4a_E           46 MRQTIRDKYGLKK   58 (79)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHhcccc
Confidence            6999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00