Citrus Sinensis ID: 030476
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 177 | 2.2.26 [Sep-21-2011] | |||||||
| Q7DLS1 | 274 | Proteasome subunit beta t | yes | no | 1.0 | 0.645 | 0.848 | 7e-86 | |
| O23710 | 273 | Proteasome subunit beta t | yes | no | 1.0 | 0.648 | 0.830 | 4e-85 | |
| Q54QR2 | 266 | Proteasome subunit beta t | yes | no | 0.949 | 0.631 | 0.596 | 2e-51 | |
| Q99436 | 277 | Proteasome subunit beta t | yes | no | 0.949 | 0.606 | 0.558 | 7e-48 | |
| Q9JHW0 | 277 | Proteasome subunit beta t | yes | no | 0.977 | 0.624 | 0.542 | 2e-47 | |
| P70195 | 277 | Proteasome subunit beta t | yes | no | 0.949 | 0.606 | 0.552 | 2e-47 | |
| A1XQU1 | 277 | Proteasome subunit beta t | yes | no | 0.949 | 0.606 | 0.552 | 4e-47 | |
| Q2TBP0 | 277 | Proteasome subunit beta t | yes | no | 0.943 | 0.602 | 0.555 | 9e-47 | |
| P25043 | 261 | Proteasome subunit beta t | yes | no | 0.875 | 0.593 | 0.547 | 6e-43 | |
| Q09841 | 267 | Probable proteasome subun | yes | no | 0.875 | 0.580 | 0.512 | 1e-39 |
| >sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2 | Back alignment and function desciption |
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Score = 315 bits (808), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 151/178 (84%), Positives = 169/178 (94%), Gaps = 1/178 (0%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
MVSSQL+LHRY TGR+SRVVTALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHG
Sbjct: 97 MVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHG 156
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STDTLPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV +AICSGIFNDLGSGSNVD+CV
Sbjct: 157 STDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICV 216
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE-GGDAMEE 177
ITKGHKEYLRN++ PNPRT+V++KGYSF KKTEVLLTKITPL ERVE+VE G+AMEE
Sbjct: 217 ITKGHKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLERVEIVEVAGEAMEE 274
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The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1 |
| >sp|O23710|PSB7A_ARATH Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q54QR2|PSB7_DICDI Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q99436|PSB7_HUMAN Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9JHW0|PSB7_RAT Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1 | Back alignment and function description |
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| >sp|P70195|PSB7_MOUSE Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1 | Back alignment and function description |
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| >sp|A1XQU1|PSB7_PIG Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q2TBP0|PSB7_BOVIN Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1 | Back alignment and function description |
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| >sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q09841|PSB2_SCHPO Probable proteasome subunit beta type-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pup1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 177 | ||||||
| 339777225 | 268 | 20S proteasome beta subunit [Dimocarpus | 1.0 | 0.660 | 0.926 | 1e-92 | |
| 224140867 | 274 | predicted protein [Populus trichocarpa] | 1.0 | 0.645 | 0.909 | 2e-92 | |
| 449443766 | 273 | PREDICTED: proteasome subunit beta type- | 1.0 | 0.648 | 0.898 | 2e-90 | |
| 359473123 | 267 | PREDICTED: proteasome subunit beta type- | 1.0 | 0.662 | 0.898 | 3e-90 | |
| 224078968 | 274 | predicted protein [Populus trichocarpa] | 1.0 | 0.645 | 0.887 | 3e-90 | |
| 225424598 | 273 | PREDICTED: proteasome subunit beta type- | 1.0 | 0.648 | 0.898 | 5e-90 | |
| 449492703 | 273 | PREDICTED: proteasome subunit beta type- | 1.0 | 0.648 | 0.892 | 1e-89 | |
| 388510952 | 272 | unknown [Lotus japonicus] | 1.0 | 0.650 | 0.870 | 1e-88 | |
| 356501624 | 271 | PREDICTED: proteasome subunit beta type- | 0.994 | 0.649 | 0.892 | 1e-88 | |
| 255570177 | 278 | proteasome subunit beta type 7,10, putat | 1.0 | 0.636 | 0.867 | 6e-88 |
| >gi|339777225|gb|AEK05509.1| 20S proteasome beta subunit [Dimocarpus longan] | Back alignment and taxonomy information |
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Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 164/177 (92%), Positives = 173/177 (97%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
MVSSQLQLHRYHTGRESRVVTALTLLKKHLF+YQGYVQAALVLGGVD TGPHLHTIYPHG
Sbjct: 92 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFSYQGYVQAALVLGGVDVTGPHLHTIYPHG 151
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STDTLPFATMGSGSLAAMAMFESKYKEGLT+DEGI+LVV+AICSGIFNDLGSGSNVDVCV
Sbjct: 152 STDTLPFATMGSGSLAAMAMFESKYKEGLTRDEGIKLVVEAICSGIFNDLGSGSNVDVCV 211
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVEGGDAMEE 177
ITKGHKEYLRNHLLPNPRTFV++KGYSF KKTEVL TKI PL+ERVE++EGGDAMEE
Sbjct: 212 ITKGHKEYLRNHLLPNPRTFVSSKGYSFSKKTEVLSTKIIPLKERVEIIEGGDAMEE 268
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Source: Dimocarpus longan Species: Dimocarpus longan Genus: Dimocarpus Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140867|ref|XP_002323800.1| predicted protein [Populus trichocarpa] gi|118484467|gb|ABK94109.1| unknown [Populus trichocarpa] gi|222866802|gb|EEF03933.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449443766|ref|XP_004139648.1| PREDICTED: proteasome subunit beta type-7-B-like [Cucumis sativus] gi|449475427|ref|XP_004154453.1| PREDICTED: proteasome subunit beta type-7-B-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|359473123|ref|XP_002285417.2| PREDICTED: proteasome subunit beta type-7-B isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224078968|ref|XP_002305699.1| predicted protein [Populus trichocarpa] gi|118486666|gb|ABK95170.1| unknown [Populus trichocarpa] gi|222848663|gb|EEE86210.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225424598|ref|XP_002285415.1| PREDICTED: proteasome subunit beta type-7-B isoform 1 [Vitis vinifera] gi|296081387|emb|CBI16820.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449492703|ref|XP_004159076.1| PREDICTED: proteasome subunit beta type-7-A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|388510952|gb|AFK43542.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|356501624|ref|XP_003519624.1| PREDICTED: proteasome subunit beta type-7-B-like [Glycine max] gi|356552635|ref|XP_003544669.1| PREDICTED: proteasome subunit beta type-7-B-like isoform 1 [Glycine max] gi|356552637|ref|XP_003544670.1| PREDICTED: proteasome subunit beta type-7-B-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255570177|ref|XP_002526049.1| proteasome subunit beta type 7,10, putative [Ricinus communis] gi|223534630|gb|EEF36326.1| proteasome subunit beta type 7,10, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 177 | ||||||
| TAIR|locus:2168718 | 274 | PBB2 "20S proteasome beta subu | 1.0 | 0.645 | 0.848 | 4.2e-79 | |
| TAIR|locus:2086681 | 273 | PBB1 [Arabidopsis thaliana (ta | 1.0 | 0.648 | 0.830 | 3.8e-78 | |
| DICTYBASE|DDB_G0283679 | 266 | psmB7 "proteasome subunit beta | 0.949 | 0.631 | 0.596 | 6e-48 | |
| UNIPROTKB|Q99436 | 277 | PSMB7 "Proteasome subunit beta | 0.943 | 0.602 | 0.567 | 3.4e-45 | |
| FB|FBgn0023174 | 272 | Prosbeta2 "Proteasome beta2 su | 0.949 | 0.617 | 0.575 | 4.4e-45 | |
| MGI|MGI:107637 | 277 | Psmb7 "proteasome (prosome, ma | 0.943 | 0.602 | 0.561 | 1.2e-44 | |
| RGD|621093 | 277 | Psmb7 "proteasome (prosome, ma | 0.943 | 0.602 | 0.561 | 1.2e-44 | |
| ZFIN|ZDB-GENE-001208-4 | 286 | psmb7 "proteasome (prosome, ma | 0.949 | 0.587 | 0.547 | 1.2e-44 | |
| UNIPROTKB|Q2TBP0 | 277 | PSMB7 "Proteasome subunit beta | 0.943 | 0.602 | 0.555 | 3.1e-44 | |
| UNIPROTKB|A1XQU1 | 277 | PSMB7 "Proteasome subunit beta | 0.943 | 0.602 | 0.561 | 3.1e-44 |
| TAIR|locus:2168718 PBB2 "20S proteasome beta subunit PBB2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 151/178 (84%), Positives = 169/178 (94%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
MVSSQL+LHRY TGR+SRVVTALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHG
Sbjct: 97 MVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHG 156
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STDTLPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV +AICSGIFNDLGSGSNVD+CV
Sbjct: 157 STDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICV 216
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE-GGDAMEE 177
ITKGHKEYLRN++ PNPRT+V++KGYSF KKTEVLLTKITPL ERVE+VE G+AMEE
Sbjct: 217 ITKGHKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLERVEIVEVAGEAMEE 274
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| TAIR|locus:2086681 PBB1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0283679 psmB7 "proteasome subunit beta type 7" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q99436 PSMB7 "Proteasome subunit beta type-7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| FB|FBgn0023174 Prosbeta2 "Proteasome beta2 subunit" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| MGI|MGI:107637 Psmb7 "proteasome (prosome, macropain) subunit, beta type 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|621093 Psmb7 "proteasome (prosome, macropain) subunit, beta type 7" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-001208-4 psmb7 "proteasome (prosome, macropain) subunit, beta type, 7" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q2TBP0 PSMB7 "Proteasome subunit beta type-7" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A1XQU1 PSMB7 "Proteasome subunit beta type-7" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54QR2 | PSB7_DICDI | 3, ., 4, ., 2, 5, ., 1 | 0.5964 | 0.9491 | 0.6315 | yes | no |
| Q9JHW0 | PSB7_RAT | 3, ., 4, ., 2, 5, ., 1 | 0.5428 | 0.9774 | 0.6245 | yes | no |
| Q2TBP0 | PSB7_BOVIN | 3, ., 4, ., 2, 5, ., 1 | 0.5555 | 0.9435 | 0.6028 | yes | no |
| Q7DLS1 | PSB7B_ARATH | 3, ., 4, ., 2, 5, ., 1 | 0.8483 | 1.0 | 0.6459 | yes | no |
| P70195 | PSB7_MOUSE | 3, ., 4, ., 2, 5, ., 1 | 0.5529 | 0.9491 | 0.6064 | yes | no |
| A1XQU1 | PSB7_PIG | 3, ., 4, ., 2, 5, ., 1 | 0.5529 | 0.9491 | 0.6064 | yes | no |
| Q99436 | PSB7_HUMAN | 3, ., 4, ., 2, 5, ., 1 | 0.5588 | 0.9491 | 0.6064 | yes | no |
| O23710 | PSB7A_ARATH | 3, ., 4, ., 2, 5, ., 1 | 0.8305 | 1.0 | 0.6483 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.25.1 | 0.946 |
| 3rd Layer | 3.4.25 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_XVII0246 | RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) (274 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | eugene3.00050879 | • | • | • | • | • | 0.826 | ||||
 | estExt_Genewise1_v1.C_LG_II2236 | • | • | • | • | • | 0.805 | ||||
 | eugene3.00061745 | • | • | • | • | • | • | 0.706 | |||
 | estExt_Genewise1_v1.C_LG_XVIII1299 | • | • | • | • | • | • | 0.700 | |||
 | estExt_fgenesh4_kg.C_LG_X0022 | • | • | • | • | • | • | 0.666 | |||
 | gw1.VIII.591.1 | • | • | • | • | • | • | 0.656 | |||
 | grail3.0515000101 | • | • | • | • | • | • | 0.642 | |||
 | gw1.X.4845.1 | • | • | • | • | • | • | 0.639 | |||
 | estExt_fgenesh4_pm.C_LG_IX0168 | • | • | • | • | 0.629 | |||||
 | estExt_fgenesh4_pm.C_LG_II0671 | • | • | • | • | • | • | 0.618 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 177 | |||
| cd03763 | 189 | cd03763, proteasome_beta_type_7, proteasome beta t | 2e-87 | |
| cd01912 | 189 | cd01912, proteasome_beta, proteasome beta subunit | 5e-45 | |
| cd01906 | 182 | cd01906, proteasome_protease_HslV, proteasome_prot | 5e-34 | |
| COG0638 | 236 | COG0638, PRE1, 20S proteasome, alpha and beta subu | 9e-28 | |
| pfam00227 | 188 | pfam00227, Proteasome, Proteasome subunit | 2e-27 | |
| cd03764 | 188 | cd03764, proteasome_beta_archeal, Archeal proteaso | 6e-23 | |
| TIGR03634 | 185 | TIGR03634, arc_protsome_B, proteasome endopeptidas | 1e-21 | |
| cd03762 | 188 | cd03762, proteasome_beta_type_6, proteasome beta t | 3e-19 | |
| cd01901 | 164 | cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term | 3e-18 | |
| cd03756 | 211 | cd03756, proteasome_alpha_archeal, proteasome_alph | 3e-12 | |
| TIGR03633 | 224 | TIGR03633, arc_protsome_A, proteasome endopeptidas | 8e-12 | |
| PRK03996 | 241 | PRK03996, PRK03996, proteasome subunit alpha; Prov | 4e-11 | |
| cd03761 | 188 | cd03761, proteasome_beta_type_5, proteasome beta t | 6e-10 | |
| cd03758 | 193 | cd03758, proteasome_beta_type_2, proteasome beta t | 3e-06 | |
| cd01911 | 209 | cd01911, proteasome_alpha, proteasome alpha subuni | 1e-05 | |
| PTZ00488 | 247 | PTZ00488, PTZ00488, Proteasome subunit beta type-5 | 4e-05 | |
| cd03753 | 213 | cd03753, proteasome_alpha_type_5, proteasome_alpha | 1e-04 | |
| cd03757 | 212 | cd03757, proteasome_beta_type_1, proteasome beta t | 3e-04 | |
| cd03759 | 195 | cd03759, proteasome_beta_type_3, proteasome beta t | 0.002 | |
| cd03760 | 197 | cd03760, proteasome_beta_type_4, proteasome beta t | 0.003 | |
| cd03750 | 227 | cd03750, proteasome_alpha_type_2, proteasome_alpha | 0.003 |
| >gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit | Back alignment and domain information |
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Score = 254 bits (651), Expect = 2e-87
Identities = 92/132 (69%), Positives = 113/132 (85%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
M+SS L+LHR +TGR+ RVVTALT+LK+HLF YQG++ AALVLGGVD TGPHL++IYPHG
Sbjct: 58 MISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHG 117
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD LPF TMGSGSLAAM++ E +YK +T++E +LV +AI +GIFNDLGSGSNVD+CV
Sbjct: 118 STDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCV 177
Query: 121 ITKGHKEYLRNH 132
ITK EYLRN+
Sbjct: 178 ITKDGVEYLRNY 189
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The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189 |
| >gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit | Back alignment and domain information |
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| >gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV | Back alignment and domain information |
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| >gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit | Back alignment and domain information |
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| >gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit | Back alignment and domain information |
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| >gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit | Back alignment and domain information |
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| >gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit | Back alignment and domain information |
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| >gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid | Back alignment and domain information |
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| >gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal | Back alignment and domain information |
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| >gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex, archaeal, alpha subunit | Back alignment and domain information |
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| >gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional | Back alignment and domain information |
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| >gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit | Back alignment and domain information |
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| >gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit | Back alignment and domain information |
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| >gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit | Back alignment and domain information |
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| >gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional | Back alignment and domain information |
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| >gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5 | Back alignment and domain information |
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| >gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit | Back alignment and domain information |
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| >gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit | Back alignment and domain information |
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| >gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit | Back alignment and domain information |
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| >gnl|CDD|239719 cd03750, proteasome_alpha_type_2, proteasome_alpha_type_2 | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 177 | |||
| KOG0173 | 271 | consensus 20S proteasome, regulatory subunit beta | 100.0 | |
| cd03763 | 189 | proteasome_beta_type_7 proteasome beta type-7 subu | 100.0 | |
| cd03761 | 188 | proteasome_beta_type_5 proteasome beta type-5 subu | 100.0 | |
| cd03758 | 193 | proteasome_beta_type_2 proteasome beta type-2 subu | 99.97 | |
| cd03762 | 188 | proteasome_beta_type_6 proteasome beta type-6 subu | 99.97 | |
| PTZ00488 | 247 | Proteasome subunit beta type-5; Provisional | 99.97 | |
| cd03759 | 195 | proteasome_beta_type_3 proteasome beta type-3 subu | 99.97 | |
| cd03765 | 236 | proteasome_beta_bacterial Bacterial proteasome, be | 99.97 | |
| COG0638 | 236 | PRE1 20S proteasome, alpha and beta subunits [Post | 99.97 | |
| cd03764 | 188 | proteasome_beta_archeal Archeal proteasome, beta s | 99.97 | |
| cd03760 | 197 | proteasome_beta_type_4 proteasome beta type-4 subu | 99.97 | |
| TIGR03634 | 185 | arc_protsome_B proteasome endopeptidase complex, a | 99.97 | |
| cd03757 | 212 | proteasome_beta_type_1 proteasome beta type-1 subu | 99.97 | |
| cd03750 | 227 | proteasome_alpha_type_2 proteasome_alpha_type_2. T | 99.96 | |
| cd01912 | 189 | proteasome_beta proteasome beta subunit. The 20S p | 99.96 | |
| TIGR03633 | 224 | arc_protsome_A proteasome endopeptidase complex, a | 99.95 | |
| TIGR03690 | 219 | 20S_bact_beta proteasome, beta subunit, bacterial | 99.95 | |
| KOG0175 | 285 | consensus 20S proteasome, regulatory subunit beta | 99.95 | |
| cd03749 | 211 | proteasome_alpha_type_1 proteasome_alpha_type_1. T | 99.95 | |
| PRK03996 | 241 | proteasome subunit alpha; Provisional | 99.95 | |
| PTZ00246 | 253 | proteasome subunit alpha; Provisional | 99.95 | |
| cd03751 | 212 | proteasome_alpha_type_3 proteasome_alpha_type_3. T | 99.95 | |
| cd03756 | 211 | proteasome_alpha_archeal proteasome_alpha_archeal. | 99.95 | |
| cd03753 | 213 | proteasome_alpha_type_5 proteasome_alpha_type_5. T | 99.95 | |
| cd03752 | 213 | proteasome_alpha_type_4 proteasome_alpha_type_4. T | 99.94 | |
| KOG0176 | 241 | consensus 20S proteasome, regulatory subunit alpha | 99.94 | |
| cd03755 | 207 | proteasome_alpha_type_7 proteasome_alpha_type_7. T | 99.94 | |
| cd01906 | 182 | proteasome_protease_HslV proteasome_protease_HslV. | 99.94 | |
| cd01911 | 209 | proteasome_alpha proteasome alpha subunit. The 20S | 99.94 | |
| cd03754 | 215 | proteasome_alpha_type_6 proteasome_alpha_type_6. T | 99.94 | |
| TIGR03691 | 228 | 20S_bact_alpha proteasome, alpha subunit, bacteria | 99.94 | |
| PF00227 | 190 | Proteasome: Proteasome subunit; InterPro: IPR00135 | 99.92 | |
| KOG0177 | 200 | consensus 20S proteasome, regulatory subunit beta | 99.91 | |
| KOG0181 | 233 | consensus 20S proteasome, regulatory subunit alpha | 99.91 | |
| KOG0174 | 224 | consensus 20S proteasome, regulatory subunit beta | 99.91 | |
| KOG0183 | 249 | consensus 20S proteasome, regulatory subunit alpha | 99.89 | |
| KOG0179 | 235 | consensus 20S proteasome, regulatory subunit beta | 99.89 | |
| KOG0178 | 249 | consensus 20S proteasome, regulatory subunit alpha | 99.89 | |
| KOG0182 | 246 | consensus 20S proteasome, regulatory subunit alpha | 99.86 | |
| KOG0180 | 204 | consensus 20S proteasome, regulatory subunit beta | 99.83 | |
| KOG0863 | 264 | consensus 20S proteasome, regulatory subunit alpha | 99.82 | |
| KOG0185 | 256 | consensus 20S proteasome, regulatory subunit beta | 99.82 | |
| KOG0184 | 254 | consensus 20S proteasome, regulatory subunit alpha | 99.78 | |
| cd01901 | 164 | Ntn_hydrolase The Ntn hydrolases (N-terminal nucle | 99.75 | |
| cd01913 | 171 | protease_HslV Protease HslV and the ATPase/chapero | 99.74 | |
| PRK05456 | 172 | ATP-dependent protease subunit HslV; Provisional | 99.73 | |
| TIGR03692 | 171 | ATP_dep_HslV ATP-dependent protease HslVU, peptida | 99.71 | |
| COG3484 | 255 | Predicted proteasome-type protease [Posttranslatio | 98.44 | |
| PF12465 | 38 | Pr_beta_C: Proteasome beta subunits C terminal ; I | 97.93 | |
| KOG3361 | 157 | consensus Iron binding protein involved in Fe-S cl | 91.99 | |
| COG5405 | 178 | HslV ATP-dependent protease HslVU (ClpYQ), peptida | 91.44 | |
| PF09894 | 194 | DUF2121: Uncharacterized protein conserved in arch | 88.73 |
| >KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=282.12 Aligned_cols=162 Identities=62% Similarity=0.955 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHH
Q 030476 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAM 80 (177)
Q Consensus 1 ~lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~ 80 (177)
|+++++++|++++++.++|..+.++++|+|++|+|++++++|+||+|..|||||++.|+|+....+|.++|||+.+|+++
T Consensus 95 m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsv 174 (271)
T KOG0173|consen 95 MISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSV 174 (271)
T ss_pred HHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCCCccccCCCCCcCCc-ccceeeeee
Q 030476 81 FESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKI 159 (177)
Q Consensus 81 Le~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 159 (177)
||++|++|||+|||++|+++|+.+++.+|+.||+++++|||++.+++++|+|..|+.+. .|...|+|++ +|+||+++|
T Consensus 175 lEsr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~lr~~~~~~~~~-~r~~~y~~~~gtT~VL~~~v 253 (271)
T KOG0173|consen 175 LESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYLRNYSRPNEKG-ERTGRYKFKPGTTAVLKEKV 253 (271)
T ss_pred HHHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCccccccCCCCCCCc-cccceeeeCCCceEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999998 7999999999 999999999
Q ss_pred Eecc
Q 030476 160 TPLR 163 (177)
Q Consensus 160 ~~~~ 163 (177)
.|+.
T Consensus 254 ~~l~ 257 (271)
T KOG0173|consen 254 YPLL 257 (271)
T ss_pred eeee
Confidence 9997
|
|
| >cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit | Back alignment and domain information |
|---|
| >cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit | Back alignment and domain information |
|---|
| >cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit | Back alignment and domain information |
|---|
| >cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit | Back alignment and domain information |
|---|
| >PTZ00488 Proteasome subunit beta type-5; Provisional | Back alignment and domain information |
|---|
| >cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit | Back alignment and domain information |
|---|
| >cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit | Back alignment and domain information |
|---|
| >COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit | Back alignment and domain information |
|---|
| >cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit | Back alignment and domain information |
|---|
| >TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit | Back alignment and domain information |
|---|
| >cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit | Back alignment and domain information |
|---|
| >cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2 | Back alignment and domain information |
|---|
| >cd01912 proteasome_beta proteasome beta subunit | Back alignment and domain information |
|---|
| >TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit | Back alignment and domain information |
|---|
| >TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type | Back alignment and domain information |
|---|
| >KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1 | Back alignment and domain information |
|---|
| >PRK03996 proteasome subunit alpha; Provisional | Back alignment and domain information |
|---|
| >PTZ00246 proteasome subunit alpha; Provisional | Back alignment and domain information |
|---|
| >cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3 | Back alignment and domain information |
|---|
| >cd03756 proteasome_alpha_archeal proteasome_alpha_archeal | Back alignment and domain information |
|---|
| >cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5 | Back alignment and domain information |
|---|
| >cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4 | Back alignment and domain information |
|---|
| >KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7 | Back alignment and domain information |
|---|
| >cd01906 proteasome_protease_HslV proteasome_protease_HslV | Back alignment and domain information |
|---|
| >cd01911 proteasome_alpha proteasome alpha subunit | Back alignment and domain information |
|---|
| >cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6 | Back alignment and domain information |
|---|
| >TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type | Back alignment and domain information |
|---|
| >PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins | Back alignment and domain information |
|---|
| >KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid | Back alignment and domain information |
|---|
| >cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome | Back alignment and domain information |
|---|
| >PRK05456 ATP-dependent protease subunit HslV; Provisional | Back alignment and domain information |
|---|
| >TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit | Back alignment and domain information |
|---|
| >COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12465 Pr_beta_C: Proteasome beta subunits C terminal ; InterPro: IPR024689 This domain is found in the C terminus of beta-type subunits of the proteasome, a multimeric complex that degrades proteins into peptides as part of the MHC class I-mediated Ag-presenting pathway [] | Back alignment and domain information |
|---|
| >KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 177 | ||||
| 1iru_I | 234 | Crystal Structure Of The Mammalian 20s Proteasome A | 2e-48 | ||
| 3unb_H | 234 | Mouse Constitutive 20s Proteasome In Complex With P | 2e-48 | ||
| 1fnt_I | 232 | Crystal Structure Of The 20s Proteasome From Yeast | 5e-44 | ||
| 3nzj_H | 261 | Crystal Structure Of Yeast 20s Proteasome In Comple | 5e-44 | ||
| 1ryp_I | 222 | Crystal Structure Of The 20s Proteasome From Yeast | 7e-44 | ||
| 3unf_H | 234 | Mouse 20s Immunoproteasome In Complex With Pr-957 L | 3e-35 | ||
| 1ya7_H | 217 | Implications For Interactions Of Proteasome With Pa | 3e-12 | ||
| 1pma_B | 211 | Proteasome From Thermoplasma Acidophilum Length = 2 | 3e-12 | ||
| 3c91_H | 203 | Thermoplasma Acidophilum 20s Proteasome With An Ope | 3e-12 | ||
| 1j2q_H | 202 | 20s Proteasome In Complex With Calpain-inhibitor I | 4e-10 | ||
| 3h4p_A | 264 | Proteasome 20s Core Particle From Methanocaldococcu | 3e-08 | ||
| 3h4p_a | 219 | Proteasome 20s Core Particle From Methanocaldococcu | 2e-07 | ||
| 3unb_N | 205 | Mouse Constitutive 20s Proteasome In Complex With P | 3e-07 | ||
| 1iru_H | 205 | Crystal Structure Of The Mammalian 20s Proteasome A | 8e-07 | ||
| 1pma_A | 233 | Proteasome From Thermoplasma Acidophilum Length = 2 | 1e-05 | ||
| 1yar_A | 233 | Structure Of Archeabacterial 20s Proteasome Mutant | 1e-05 | ||
| 3jrm_A | 227 | Crystal Structure Of Archaeal 20s Proteasome In Com | 1e-05 | ||
| 1yau_A | 233 | Structure Of Archeabacterial 20s Proteasome- Pa26 C | 1e-05 | ||
| 2ku1_A | 237 | Dynamic Regulation Of Archaeal Proteasome Gate Open | 1e-05 | ||
| 2ku2_A | 237 | Dynamic Regulation Of Archaeal Proteasome Gate Open | 1e-05 | ||
| 3nzj_N | 215 | Crystal Structure Of Yeast 20s Proteasome In Comple | 4e-05 | ||
| 1g65_N | 196 | Crystal Structure Of Epoxomicin:20s Proteasome Reve | 4e-05 | ||
| 1ryp_H | 205 | Crystal Structure Of The 20s Proteasome From Yeast | 4e-05 | ||
| 1vsy_H | 196 | Proteasome Activator Complex Length = 196 | 5e-05 | ||
| 4b4t_5 | 287 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-04 | ||
| 3nzj_K | 287 | Crystal Structure Of Yeast 20s Proteasome In Comple | 2e-04 | ||
| 1ryp_L | 212 | Crystal Structure Of The 20s Proteasome From Yeast | 3e-04 | ||
| 1g0u_K | 212 | A Gated Channel Into The Proteasome Core Particle L | 3e-04 |
| >pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 234 | Back alignment and structure |
|
| >pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234 | Back alignment and structure |
| >pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 232 | Back alignment and structure |
| >pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 261 | Back alignment and structure |
| >pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222 | Back alignment and structure |
| >pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 234 | Back alignment and structure |
| >pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217 | Back alignment and structure |
| >pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211 | Back alignment and structure |
| >pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203 | Back alignment and structure |
| >pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202 | Back alignment and structure |
| >pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264 | Back alignment and structure |
| >pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219 | Back alignment and structure |
| >pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205 | Back alignment and structure |
| >pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205 | Back alignment and structure |
| >pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum Length = 233 | Back alignment and structure |
| >pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s- Pa26 Complex Length = 233 | Back alignment and structure |
| >pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex With Mutated P26 Activator Length = 227 | Back alignment and structure |
| >pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex Length = 233 | Back alignment and structure |
| >pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237 | Back alignment and structure |
| >pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As Studied By Trosy-Nmr Length = 237 | Back alignment and structure |
| >pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 215 | Back alignment and structure |
| >pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors Length = 196 | Back alignment and structure |
| >pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 205 | Back alignment and structure |
| >pdb|1VSY|H Chain H, Proteasome Activator Complex Length = 196 | Back alignment and structure |
| >pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 287 | Back alignment and structure |
| >pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 287 | Back alignment and structure |
| >pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 212 | Back alignment and structure |
| >pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle Length = 212 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 2e-68
Identities = 76/177 (42%), Positives = 107/177 (60%), Gaps = 3/177 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
M +S+++LH TGRE RV T +L++ LF YQG+V A+LV+GGVD GP L+ ++PHG
Sbjct: 58 MAASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHG 117
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
S LPF +GSG AA+A+ E +++ +T + +L+V+AI +GI +DLGSG NVD CV
Sbjct: 118 SYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACV 177
Query: 121 ITKGHKEYLRNHLLPNPRTFVNAKGYSFPKK-TEVLLTKITPLRERVEVVEGGDAME 176
IT G + R P A Y F T VL ++ PL + + E AME
Sbjct: 178 ITAGGAKLQRALSTPTEP-VQRAGRYRFAPGTTPVLTREVRPLTLEL-LEETVQAME 232
|
| >1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234 | Back alignment and structure |
|---|
| >1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222 | Back alignment and structure |
|---|
| >3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261 | Back alignment and structure |
|---|
| >3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199 | Back alignment and structure |
|---|
| >1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205 | Back alignment and structure |
|---|
| >1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204 | Back alignment and structure |
|---|
| >1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212 | Back alignment and structure |
|---|
| >3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287 | Back alignment and structure |
|---|
| >1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202 | Back alignment and structure |
|---|
| >1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201 | Back alignment and structure |
|---|
| >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205 | Back alignment and structure |
|---|
| >3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264 | Back alignment and structure |
|---|
| >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 | Back alignment and structure |
|---|
| >1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198 | Back alignment and structure |
|---|
| >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219 | Back alignment and structure |
|---|
| >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213 | Back alignment and structure |
|---|
| >1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205 | Back alignment and structure |
|---|
| >1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222 | Back alignment and structure |
|---|
| >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233 | Back alignment and structure |
|---|
| >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266 | Back alignment and structure |
|---|
| >1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235 | Back alignment and structure |
|---|
| >1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204 | Back alignment and structure |
|---|
| >1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294 | Back alignment and structure |
|---|
| >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291 | Back alignment and structure |
|---|
| >1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259 | Back alignment and structure |
|---|
| >3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248 | Back alignment and structure |
|---|
| >1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233 | Back alignment and structure |
|---|
| >1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241 | Back alignment and structure |
|---|
| >1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233 | Back alignment and structure |
|---|
| >1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250 | Back alignment and structure |
|---|
| >1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242 | Back alignment and structure |
|---|
| >1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246 | Back alignment and structure |
|---|
| >1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244 | Back alignment and structure |
|---|
| >1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254 | Back alignment and structure |
|---|
| >1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263 | Back alignment and structure |
|---|
| >1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233 | Back alignment and structure |
|---|
| >1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261 | Back alignment and structure |
|---|
| >1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243 | Back alignment and structure |
|---|
| >1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244 | Back alignment and structure |
|---|
| >1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Length = 246 | Back alignment and structure |
|---|
| >1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Length = 241 | Back alignment and structure |
|---|
| >3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288 | Back alignment and structure |
|---|
| >1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 177 | |||
| 3unf_H | 234 | Proteasome subunit beta type-10; antigen presentat | 100.0 | |
| 1iru_I | 234 | 20S proteasome; cell cycle, immune response, prote | 100.0 | |
| 3nzj_H | 261 | Proteasome component PUP1; ubiquitin, protein degr | 100.0 | |
| 1ryp_I | 222 | 20S proteasome; multicatalytic proteinase, protein | 100.0 | |
| 1iru_N | 219 | 20S proteasome; cell cycle, immune response, prote | 99.98 | |
| 1iru_L | 204 | 20S proteasome; cell cycle, immune response, prote | 99.97 | |
| 1ryp_K | 198 | 20S proteasome; multicatalytic proteinase, protein | 99.97 | |
| 1j2q_H | 202 | Proteasome beta subunit; ubiquitin, CP, hydrolase; | 99.97 | |
| 3h4p_a | 219 | Proteasome subunit beta; core particle, cytoplasm, | 99.97 | |
| 1ryp_L | 212 | 20S proteasome; multicatalytic proteinase, protein | 99.97 | |
| 1yar_H | 217 | Proteasome beta subunit; proteasome 20S, PA26 prot | 99.97 | |
| 1iru_H | 205 | 20S proteasome; cell cycle, immune response, prote | 99.97 | |
| 1ryp_N | 233 | 20S proteasome; multicatalytic proteinase, protein | 99.97 | |
| 3nzj_K | 287 | Proteasome component PRE2; ubiquitin, protein degr | 99.97 | |
| 1iru_K | 201 | 20S proteasome; cell cycle, immune response, prote | 99.97 | |
| 1ryp_H | 205 | 20S proteasome; multicatalytic proteinase, protein | 99.97 | |
| 1yar_A | 233 | Proteasome alpha subunit; proteasome 20S, PA26 pro | 99.97 | |
| 1iru_B | 233 | 20S proteasome; cell cycle, immune response, prote | 99.97 | |
| 1ryp_A | 243 | 20S proteasome; multicatalytic proteinase, protein | 99.97 | |
| 1iru_M | 213 | 20S proteasome; cell cycle, immune response, prote | 99.97 | |
| 1g0u_M | 266 | Proteasome component PRE4; ubiquitin, degradation, | 99.97 | |
| 1ryp_M | 222 | 20S proteasome; multicatalytic proteinase, protein | 99.97 | |
| 1ryp_J | 204 | 20S proteasome; multicatalytic proteinase, protein | 99.96 | |
| 1iru_J | 205 | 20S proteasome; cell cycle, immune response, prote | 99.96 | |
| 3unf_N | 199 | Proteasome subunit beta type-9; antigen presentati | 99.96 | |
| 1ryp_G | 244 | 20S proteasome; multicatalytic proteinase, protein | 99.96 | |
| 1ryp_F | 233 | 20S proteasome; multicatalytic proteinase, protein | 99.96 | |
| 1iru_F | 263 | 20S proteasome; cell cycle, immune response, prote | 99.96 | |
| 1iru_A | 246 | 20S proteasome; cell cycle, immune response, prote | 99.96 | |
| 1iru_C | 261 | 20S proteasome; cell cycle, immune response, prote | 99.96 | |
| 1ryp_C | 244 | 20S proteasome; multicatalytic proteinase, protein | 99.96 | |
| 1ryp_E | 242 | 20S proteasome; multicatalytic proteinase, protein | 99.96 | |
| 1iru_G | 254 | 20S proteasome; cell cycle, immune response, prote | 99.96 | |
| 3h4p_A | 264 | Proteasome subunit alpha; core particle, cytoplasm | 99.96 | |
| 1q5q_H | 235 | Proteasome beta-type subunit 1; proteasome assembl | 99.96 | |
| 1iru_E | 241 | 20S proteasome; cell cycle, immune response, prote | 99.96 | |
| 3mi0_A | 248 | Proteasome subunit alpha; enzyme inhibitors, lacto | 99.96 | |
| 3nzj_F | 288 | Proteasome component C1; ubiquitin, protein degrad | 99.95 | |
| 1ryp_D | 241 | 20S proteasome; multicatalytic proteinase, protein | 99.95 | |
| 1j2p_A | 246 | Alpha-ring, proteasome alpha subunit; hydrolase; 2 | 99.95 | |
| 1iru_D | 248 | 20S proteasome; cell cycle, immune response, prote | 99.95 | |
| 1q5r_H | 294 | Proteasome beta-type subunit 1; proteasome assembl | 99.95 | |
| 1q5q_A | 259 | Proteasome alpha-type subunit 1; proteasome assemb | 99.95 | |
| 1ryp_B | 250 | 20S proteasome; multicatalytic proteinase, protein | 99.94 | |
| 2jay_A | 291 | Proteasome; hydrolase; 1.99A {Mycobacterium tuberc | 99.94 | |
| 1g3k_A | 174 | ATP-dependent protease HSLV; hydrolase; 1.90A {Hae | 99.85 | |
| 1m4y_A | 171 | ATP-dependent protease HSLV; N-terminal catalytic | 99.83 | |
| 2z3b_A | 180 | ATP-dependent protease HSLV; N-terminal nucleophIl | 99.82 |
| >3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-44 Score=287.81 Aligned_cols=173 Identities=44% Similarity=0.719 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMF 81 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~L 81 (177)
++.++++|++++|++++++.+++++++++++++++|++++||||||.+||+||++||+|++.+++++|+|+|+..++++|
T Consensus 59 ~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 138 (234)
T 3unf_H 59 AASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALL 138 (234)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHH
T ss_pred HHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCCCccccCCCCCcCCc-ccceeeeeeE
Q 030476 82 ESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKIT 160 (177)
Q Consensus 82 e~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 160 (177)
|+.|+++||+|||++++++||..++.+|+.+|++++|++|+++|+++++|+++|++|. .++..|+|+| +|+||+++|.
T Consensus 139 e~~~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T 3unf_H 139 EDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTEPV-QRAGRYRFAPGTTPVLTREVR 217 (234)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCCCC-CCCCCCCCCTTCSCEEEEEEE
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecccccc-cccccccCCCCCcceeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999 5999999999 9999999999
Q ss_pred ecc-eeeeeeecCCCCCC
Q 030476 161 PLR-ERVEVVEGGDAMEE 177 (177)
Q Consensus 161 ~~~-~~~~~~~~~~~~~~ 177 (177)
++. |.++.++ |+||+
T Consensus 218 ~~~~~~~~~~~--~~~~~ 233 (234)
T 3unf_H 218 PLTLELLEETV--QAMEV 233 (234)
T ss_dssp EC----------------
T ss_pred EeeEEEEEeee--eeccC
Confidence 998 7776666 89986
|
| >1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H | Back alignment and structure |
|---|
| >3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2 | Back alignment and structure |
|---|
| >1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... | Back alignment and structure |
|---|
| >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M | Back alignment and structure |
|---|
| >1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K | Back alignment and structure |
|---|
| >1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... | Back alignment and structure |
|---|
| >1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 | Back alignment and structure |
|---|
| >3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... | Back alignment and structure |
|---|
| >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H | Back alignment and structure |
|---|
| >1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N | Back alignment and structure |
|---|
| >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... | Back alignment and structure |
|---|
| >3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5 | Back alignment and structure |
|---|
| >1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J | Back alignment and structure |
|---|
| >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... | Back alignment and structure |
|---|
| >1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A | Back alignment and structure |
|---|
| >1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A | Back alignment and structure |
|---|
| >1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... | Back alignment and structure |
|---|
| >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L | Back alignment and structure |
|---|
| >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* | Back alignment and structure |
|---|
| >1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... | Back alignment and structure |
|---|
| >1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... | Back alignment and structure |
|---|
| >1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I | Back alignment and structure |
|---|
| >3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N | Back alignment and structure |
|---|
| >1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... | Back alignment and structure |
|---|
| >1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... | Back alignment and structure |
|---|
| >1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E | Back alignment and structure |
|---|
| >1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G | Back alignment and structure |
|---|
| >1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B | Back alignment and structure |
|---|
| >1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... | Back alignment and structure |
|---|
| >1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... | Back alignment and structure |
|---|
| >1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F | Back alignment and structure |
|---|
| >3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 | Back alignment and structure |
|---|
| >1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D | Back alignment and structure |
|---|
| >3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D | Back alignment and structure |
|---|
| >3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F* | Back alignment and structure |
|---|
| >1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... | Back alignment and structure |
|---|
| >1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* | Back alignment and structure |
|---|
| >1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* | Back alignment and structure |
|---|
| >1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H | Back alignment and structure |
|---|
| >1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A | Back alignment and structure |
|---|
| >1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... | Back alignment and structure |
|---|
| >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H | Back alignment and structure |
|---|
| >1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A | Back alignment and structure |
|---|
| >1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 | Back alignment and structure |
|---|
| >2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 177 | ||||
| d1rypi_ | 222 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 2e-37 | |
| d1irui_ | 220 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 6e-36 | |
| d1iruh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 1e-26 | |
| d1rypl_ | 212 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 2e-23 | |
| d1ryph_ | 205 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 4e-23 | |
| d1irul_ | 201 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 1e-21 | |
| d1irue_ | 234 | d.153.1.4 (E:) Proteasome alpha subunit (non-catal | 4e-21 | |
| d1rypg_ | 244 | d.153.1.4 (G:) Proteasome alpha subunit (non-catal | 6e-21 | |
| d1rypb_ | 250 | d.153.1.4 (B:) Proteasome alpha subunit (non-catal | 1e-20 | |
| d1j2qh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 3e-20 | |
| d1irug_ | 245 | d.153.1.4 (G:) Proteasome alpha subunit (non-catal | 2e-19 | |
| d1rypc_ | 244 | d.153.1.4 (C:) Proteasome alpha subunit (non-catal | 6e-19 | |
| d1yara1 | 221 | d.153.1.4 (A:13-233) Proteasome alpha subunit (non | 6e-19 | |
| d1rypk_ | 198 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 8e-19 | |
| d1j2pa_ | 243 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 5e-18 | |
| d1iruc_ | 250 | d.153.1.4 (C:) Proteasome alpha subunit (non-catal | 6e-18 | |
| d1rypa_ | 243 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 3e-17 | |
| d1iruf_ | 238 | d.153.1.4 (F:) Proteasome alpha subunit (non-catal | 3e-17 | |
| d1rypf_ | 233 | d.153.1.4 (F:) Proteasome alpha subunit (non-catal | 8e-17 | |
| d1irud_ | 243 | d.153.1.4 (D:) Proteasome alpha subunit (non-catal | 3e-16 | |
| d1ryp2_ | 233 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 4e-16 | |
| d1iruj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 1e-15 | |
| d1iruk_ | 199 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 1e-15 | |
| d1yarh1 | 203 | d.153.1.4 (H:1-203) Proteasome beta subunit (catal | 1e-15 | |
| d1iru2_ | 217 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 1e-15 | |
| d1iru1_ | 213 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 2e-15 | |
| d1irua_ | 244 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 5e-15 | |
| d1ryp1_ | 222 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 1e-14 | |
| d1rype_ | 242 | d.153.1.4 (E:) Proteasome alpha subunit (non-catal | 2e-14 | |
| d1rypj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 2e-14 | |
| d1q5qa_ | 227 | d.153.1.4 (A:) Proteasome alpha subunit (non-catal | 3e-14 | |
| d1irub_ | 233 | d.153.1.4 (B:) Proteasome alpha subunit (non-catal | 4e-14 | |
| d1q5qh_ | 224 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 1e-13 | |
| d1rypd_ | 241 | d.153.1.4 (D:) Proteasome alpha subunit (non-catal | 1e-12 | |
| d2z3ba1 | 180 | d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus | 2e-10 | |
| d1m4ya_ | 171 | d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma | 7e-07 | |
| d1g3ka_ | 173 | d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i | 1e-06 |
| >d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 126 bits (316), Expect = 2e-37
Identities = 88/166 (53%), Positives = 117/166 (70%), Gaps = 3/166 (1%)
Query: 1 MVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHG 60
++ S ++LH +T RE RVV+AL +LK+HLF YQG++ A L++ GVD TG HL +I+ HG
Sbjct: 58 LIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHG 117
Query: 61 STDTLPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCV 120
STD + ++GSGSLAAMA+ ES +K+ LTK+E I+L DAI +GI+NDLGSGSNVDVCV
Sbjct: 118 STDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 177
Query: 121 ITKG-HKEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKITPLRE 164
+ G EYLRN+L PN R K Y FP+ T VL I + +
Sbjct: 178 MEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVLKESIVNICD 222
|
| >d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220 | Back information, alignment and structure |
|---|
| >d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202 | Back information, alignment and structure |
|---|
| >d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
| >d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 | Back information, alignment and structure |
|---|
| >d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201 | Back information, alignment and structure |
|---|
| >d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234 | Back information, alignment and structure |
|---|
| >d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 | Back information, alignment and structure |
|---|
| >d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250 | Back information, alignment and structure |
|---|
| >d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
| >d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245 | Back information, alignment and structure |
|---|
| >d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 | Back information, alignment and structure |
|---|
| >d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221 | Back information, alignment and structure |
|---|
| >d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198 | Back information, alignment and structure |
|---|
| >d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243 | Back information, alignment and structure |
|---|
| >d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250 | Back information, alignment and structure |
|---|
| >d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243 | Back information, alignment and structure |
|---|
| >d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238 | Back information, alignment and structure |
|---|
| >d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
| >d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243 | Back information, alignment and structure |
|---|
| >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
| >d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 | Back information, alignment and structure |
|---|
| >d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199 | Back information, alignment and structure |
|---|
| >d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203 | Back information, alignment and structure |
|---|
| >d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 | Back information, alignment and structure |
|---|
| >d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 | Back information, alignment and structure |
|---|
| >d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244 | Back information, alignment and structure |
|---|
| >d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
| >d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242 | Back information, alignment and structure |
|---|
| >d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 | Back information, alignment and structure |
|---|
| >d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227 | Back information, alignment and structure |
|---|
| >d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233 | Back information, alignment and structure |
|---|
| >d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224 | Back information, alignment and structure |
|---|
| >d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241 | Back information, alignment and structure |
|---|
| >d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 | Back information, alignment and structure |
|---|
| >d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
| >d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 177 | |||
| d1irui_ | 220 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 100.0 | |
| d1rypi_ | 222 | Proteasome beta subunit (catalytic) {Baker's yeast | 100.0 | |
| d1rypk_ | 198 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.97 | |
| d1irul_ | 201 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.97 | |
| d1ryph_ | 205 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.97 | |
| d1iruh_ | 202 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.97 | |
| d1rypl_ | 212 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.97 | |
| d1j2qh_ | 202 | Proteasome beta subunit (catalytic) {Archaeon Arch | 99.96 | |
| d1yarh1 | 203 | Proteasome beta subunit (catalytic) {Archaeon Ther | 99.96 | |
| d1irue_ | 234 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.96 | |
| d1ryp2_ | 233 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.96 | |
| d1iru2_ | 217 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.96 | |
| d1iruc_ | 250 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.96 | |
| d1yara1 | 221 | Proteasome alpha subunit (non-catalytic) {Archaeon | 99.96 | |
| d1rypf_ | 233 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.96 | |
| d1rypb_ | 250 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.95 | |
| d1rypc_ | 244 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.95 | |
| d1rypa_ | 243 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.95 | |
| d1irub_ | 233 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.95 | |
| d1rypj_ | 204 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.95 | |
| d1iruf_ | 238 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.95 | |
| d1irua_ | 244 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.95 | |
| d1iruk_ | 199 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.95 | |
| d1irug_ | 245 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.95 | |
| d1rype_ | 242 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.95 | |
| d1rypg_ | 244 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.94 | |
| d1j2pa_ | 243 | Proteasome alpha subunit (non-catalytic) {Archaeon | 99.94 | |
| d1iruj_ | 204 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.94 | |
| d1ryp1_ | 222 | Proteasome beta subunit (catalytic) {Baker's yeast | 99.94 | |
| d1irud_ | 243 | Proteasome alpha subunit (non-catalytic) {Cow (Bos | 99.93 | |
| d1q5qh_ | 224 | Proteasome beta subunit (catalytic) {Rhodococcus e | 99.93 | |
| d1rypd_ | 241 | Proteasome alpha subunit (non-catalytic) {Baker's | 99.93 | |
| d1iru1_ | 213 | Proteasome beta subunit (catalytic) {Cow (Bos taur | 99.92 | |
| d1q5qa_ | 227 | Proteasome alpha subunit (non-catalytic) {Rhodococ | 99.92 | |
| d2z3ba1 | 180 | HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14 | 99.52 | |
| d1m4ya_ | 171 | HslV (ClpQ) protease {Thermotoga maritima [TaxId: | 99.34 | |
| d1g3ka_ | 173 | HslV (ClpQ) protease {Haemophilus influenzae [TaxI | 99.34 |
| >d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-37 Score=245.00 Aligned_cols=160 Identities=58% Similarity=0.943 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcceeeEEEEEEeCCCCeEEEEcCCCceeeeCeEEEeCChHHHHHHH
Q 030476 2 VSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMF 81 (177)
Q Consensus 2 lr~e~~~~~~~~g~~~~v~~~a~~l~~~l~~~~~~~gvslIlaG~D~~gp~Ly~idp~Gs~~~~~~~a~G~gs~~a~~~L 81 (177)
++.+++.|++++|+++++..+++++++++|+++.++++++|+||+|.+||+||++||.|++.+++++|+|+|+.+++++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~y~~~~p~~~~~ivaG~D~~g~~L~~id~~G~~~~~~~~a~Gsgs~~a~~~L 138 (220)
T d1irui_ 59 ISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVF 138 (220)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhhhhhcccccceeEEEEEEeCCCcEEEEEeCCCcEEEeeEEEEccccHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHhhhccCCCCCcEEEEEEecCCeEEecceeCCCCccccCCCCCcCCc-ccceeeeeeE
Q 030476 82 ESKYKEGLTKDEGIQLVVDAICSGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPK-KTEVLLTKIT 160 (177)
Q Consensus 82 e~~~~~~mt~eeai~l~~~al~~~~~~D~~sg~~vev~vi~k~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 160 (177)
++.|+++||++||++++++||..+.+||+.+|++++|++|++||+++++|++++++|. .+...++||+ +|+|+++++.
T Consensus 139 ~~~~~~~~s~~ea~~l~~~al~~~~~~D~~sg~~i~i~vitkdg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 217 (220)
T d1irui_ 139 EDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKG-TRLGRYRCEKGTTAVLTEKIT 217 (220)
T ss_dssp HHSCCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCCCC-CCCSCCCCCTTCSCBSCCCCC
T ss_pred HHhcccCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEECCCeEEeCcccccchhh-hhhhccccCCCCcceeeeeeE
Confidence 9999999999999999999999999999999999999999999999999999999999 5789999999 9999999999
Q ss_pred ec
Q 030476 161 PL 162 (177)
Q Consensus 161 ~~ 162 (177)
|+
T Consensus 218 ~~ 219 (220)
T d1irui_ 218 PL 219 (220)
T ss_dssp BC
T ss_pred EC
Confidence 87
|
| >d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
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| >d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
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| >d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
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| >d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
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| >d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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