Citrus Sinensis ID: 030477

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccHHHHHHHHHHHHccEEEEHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccEEEEcccccccccccccEEEEEEcccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccccccHHHHHHHHHHHccccEEEHHHHHHHccccccccHHcccccccHHHHHHHHHHHHHcccEEEEEccccccccccEEEEEEEEcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHEEEEcccccHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
maqdskrsrpnilvtgtpgtgktttstALAESTQLRHINIGELVreknlhdgwddelechvinedlvCDELEDIMEQGgnivdyhgcdffperwFDRVVVLQTENSVLYDRltkrgytgakltnnIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS
Flexible Loop (DISEMBL)
maqdskrsrpnilvtgtpgtgktttstalaestqlrhiNIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQtensvlydrltkrgytgakltnnIECEIFQVLLEEAKESYPEDIVLAlksdtiediTRNIAILtdwvrnwqprs
Low Complexity Region (SEG)
MAQDSKRSRPNILVtgtpgtgktttstALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS
Disordered region (IsUnstruct)
*********************************QLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW****
Disordered Region (DISOPRED)
***********ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTK*******L*NNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQ***
Disordered Region (DISEMBL)
*********PNILVTGTP*********ALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS
Disordered Region (DISPRO)
*******SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9FJI1	178	Adenylate kinase isoenzym	yes	no	0.965	0.955	0.694	2e-70
Q54Y03	175	Probable adenylate kinase	yes	no	0.971	0.977	0.526	8e-55
A5PJA1	172	Adenylate kinase isoenzym	yes	no	0.926	0.947	0.570	3e-50
Q9TTU2	172	Adenylate kinase isoenzym	yes	no	0.926	0.947	0.564	1e-49
Q9Y3D8	172	Adenylate kinase isoenzym	yes	no	0.926	0.947	0.552	2e-49
Q8VCP8	172	Adenylate kinase isoenzym	yes	no	0.926	0.947	0.558	6e-49
Q5EB68	172	Adenylate kinase isoenzym	yes	no	0.926	0.947	0.552	1e-48
Q09527	182	Probable adenylate kinase	yes	no	0.920	0.890	0.518	4e-43
Q8TG40	248	Putative adenylate kinase	N/A	no	0.977	0.693	0.434	4e-38
Q9UU88	175	Putative adenylate kinase	yes	no	0.965	0.971	0.452	4e-38

>sp|Q9FJI1|AAK6_ARATH Adenylate kinase isoenzyme 6 OS=Arabidopsis thaliana GN=AAK6 PE=1 SV=1

 Score =  264 bits (674), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 118/170 (69%), Positives = 149/170 (87%)

Query: 5   SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE 64
           ++R RPN+L+TGTPGTGK+TT++ALAE+T LR+I IG+LV+EK  + GWD+ELECH INE
Sbjct: 9   TRRERPNLLITGTPGTGKSTTASALAEATNLRYICIGDLVKEKEFYHGWDNELECHFINE 68

Query: 65  DLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN 124
           D V DEL+D M +GGNIVDYHGCDFFP+RWFDRVVVL+TENSVLYDRLT RGY+G KL+N
Sbjct: 69  DSVIDELDDAMIEGGNIVDYHGCDFFPQRWFDRVVVLRTENSVLYDRLTNRGYSGTKLSN 128

Query: 125 NIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQP 174
           N++CE++QVLLEEA +SY E+IV  L+S+TIEDI+ N++ LTDW+  WQP
Sbjct: 129 NLQCEMYQVLLEEAHDSYDEEIVTELQSNTIEDISNNVSTLTDWINAWQP 178

Broad activity as an NMP kinase. Preferred phosphate donor and acceptor are ATP and AMP, respectively. Promotes stem growth.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|Q54Y03|KAD6_DICDI Probable adenylate kinase isoenzyme 6 OS=Dictyostelium discoideum GN=DDB_G0278493 PE=3 SV=1

 Score =  212 bits (540), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 132/171 (77%)

Query: 6   KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINED 65
           KR++PNIL+TGTPGTGKT+ +  +A + ++ HI+I   V+EK LHDGWD E +C++++ED
Sbjct: 4   KRNKPNILITGTPGTGKTSLAGVIASNNEMNHIDISSAVKEKELHDGWDSEFQCYILDED 63

Query: 66  LVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN 125
            VCDE ED+M +GGN+VD+HGC++FPERWFD V+VL+T+  +L DRL KR Y   K+TNN
Sbjct: 64  KVCDEFEDVMVKGGNVVDHHGCEWFPERWFDLVIVLRTDIKILNDRLEKRNYNQHKITNN 123

Query: 126 IECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS 176
           ++CEI QV+L+EA+ SY ++IV+ L S T+ED   N   ++ W++NW  ++
Sbjct: 124 LDCEIMQVILDEARNSYKQEIVVELPSTTLEDNENNQNFISQWIQNWYEKN 174

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|A5PJA1|KAD6_BOVIN Adenylate kinase isoenzyme 6 OS=Bos taurus GN=TAF9 PE=2 SV=1

 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/163 (57%), Positives = 119/163 (73%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           PNIL+TGTPG GKTT    LA  + L++IN+G+L RE  L+DG+D+E +C +++ED V D
Sbjct: 4   PNILLTGTPGVGKTTLGKELASRSGLKYINVGDLAREGQLYDGYDEEYDCPILDEDRVVD 63

Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
           ELE+ M +GG IVDYHGCDFFPERWF  V VL+T+NS+LY RL  RGY   KL +NI+CE
Sbjct: 64  ELENQMSEGGVIVDYHGCDFFPERWFHIVFVLKTDNSILYKRLENRGYNEKKLKDNIQCE 123

Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           IFQVL EEA  SY E+IV  L S+  ED+  NI  +  W+ +W
Sbjct: 124 IFQVLHEEALASYKEEIVHQLPSNKPEDLEDNINQILKWIEHW 166

Broad activity as an NMP kinase. AMP and dAMP are the preferred substrates of all tested NMPs, but CMP and dCMP are also good substrates. IMP can be phosphorylated, but to a much lesser extent. Adenylate and cytidylate can serve as phosphate acceptors.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9TTU2|KAD6_RABIT Adenylate kinase isoenzyme 6 OS=Oryctolagus cuniculus GN=TAF9 PE=2 SV=1

 Score =  195 bits (495), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/163 (56%), Positives = 117/163 (71%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           PNIL+TGTPG GKTT    LA  + L+++N+G+L RE  L+DG+D+E  C +++ED V D
Sbjct: 4   PNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGELYDGFDEEYNCPILDEDRVID 63

Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
           EL+  M  GG IVDYHGCDFFPERWF  V VL+TE SVLY RL  RGY+  KL +NI+CE
Sbjct: 64  ELDTQMRDGGVIVDYHGCDFFPERWFHIVFVLRTETSVLYKRLETRGYSEKKLNDNIQCE 123

Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           IFQVL EEA ESY E+IV  L S+  E++  NI+ +  W+  W
Sbjct: 124 IFQVLYEEAMESYKEEIVHQLPSNKPEELEENISQILKWIEQW 166

Broad activity as an NMP kinase. AMP and dAMP are the preferred substrates of all tested NMPs, but CMP and dCMP are also good substrates. IMP can be phosphorylated, but to a much lesser extent. Adenylate and cytidylate can serve as phosphate acceptors.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9Y3D8|KAD6_HUMAN Adenylate kinase isoenzyme 6 OS=Homo sapiens GN=TAF9 PE=1 SV=1

 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 120/163 (73%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           PNIL+TGTPG GKTT    LA  + L++IN+G+L RE+ L+DG+D+E +C +++ED V D
Sbjct: 4   PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 63

Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
           EL++ M +GG IVDYHGCDFFPERWF  V VL+T+ +VLY+RL  RGY   KLT+NI+CE
Sbjct: 64  ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 123

Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           IFQVL EEA  SY E+IV  L S+  E++  N+  +  W+  W
Sbjct: 124 IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 166

Broad activity as an NMP kinase. AMP and dAMP are the preferred substrates of all tested NMPs, but CMP and dCMP are also good substrates. IMP can be phosphorylated, but to a much lesser extent. Adenylate and cytidylate can serve as phosphate acceptors.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q8VCP8|KAD6_MOUSE Adenylate kinase isoenzyme 6 OS=Mus musculus GN=Taf9 PE=2 SV=1

 Score =  193 bits (490), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 91/163 (55%), Positives = 116/163 (71%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           PNIL+TGTPG GKTT    LA  + L+++N+G+L RE  L+DG+D+E  C +++ED V D
Sbjct: 4   PNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGQLYDGYDEEYGCPILDEDRVVD 63

Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
           ELE  M++GG IVDYHGCDFFPERWF  V VL+T+N VLY RL  RGY   KL +NI+CE
Sbjct: 64  ELEHQMQEGGVIVDYHGCDFFPERWFHIVFVLRTDNGVLYKRLETRGYNEKKLQDNIQCE 123

Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           IFQVL EEA  SY E+IV  L S+  E +  NI  ++ W+  W
Sbjct: 124 IFQVLYEEAIASYKEEIVHQLPSNEPEQLEDNINQISKWIEQW 166

Broad activity as an NMP kinase. AMP and dAMP are the preferred substrates of all tested NMPs, but CMP and dCMP are also good substrates. IMP can be phosphorylated, but to a much lesser extent. Adenylate and cytidylate can serve as phosphate acceptors.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5EB68|KAD6_RAT Adenylate kinase isoenzyme 6 OS=Rattus norvegicus GN=Taf9 PE=2 SV=1

 Score =  192 bits (487), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/163 (55%), Positives = 116/163 (71%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           PNIL+TGTPG GKTT    LA  + L+++N+G+L RE +L+DG+D+E  C +++ED V D
Sbjct: 4   PNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGHLYDGYDEEYGCPILDEDRVVD 63

Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
           ELE  M +GG IVDYHGCDFFPERWF  V VL+T+N +LY RL  RGY   KL +NI+CE
Sbjct: 64  ELEPQMTEGGVIVDYHGCDFFPERWFHIVFVLRTDNGILYKRLETRGYHEKKLQDNIQCE 123

Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           IFQVL EEA  SY E+IV  L S+  E +  NI  ++ W+  W
Sbjct: 124 IFQVLYEEAMASYKEEIVHQLPSNEPEQLEDNINQISKWIEQW 166

Broad activity as an NMP kinase. AMP and dAMP are the preferred substrates of all tested NMPs, but CMP and dCMP are also good substrates. IMP can be phosphorylated, but to a much lesser extent. Adenylate and cytidylate can serve as phosphate acceptors.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q09527|KAD6_CAEEL Probable adenylate kinase isoenzyme 6 OS=Caenorhabditis elegans GN=E02H1.6 PE=3 SV=2

 Score =  174 bits (440), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 110/164 (67%), Gaps = 2/164 (1%)

Query: 1   MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECH 60
           MA    R RPNILVTG+PGTGK+T    +AE      I + + VRE NL   +D++  CH
Sbjct: 1   MATPETRRRPNILVTGSPGTGKSTLGQQVAEKLGFVFIEVSKEVRENNLQGDFDEQYNCH 60

Query: 61  VINEDLVCDELEDIME--QGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYT 118
           V++ED + D + D ++  +GG +VDYHGCD FPERWFD VVVL+     LYDRL  RGY+
Sbjct: 61  VLDEDKLLDHISDRLDSDEGGIVVDYHGCDLFPERWFDVVVVLRCPTEKLYDRLQSRGYS 120

Query: 119 GAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162
             K+  N+ECEIF  LLEEA+ESY EDIV  L+S+T E +  N+
Sbjct: 121 EFKIKENVECEIFGTLLEEARESYSEDIVHELQSETTEQMEENL 164

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q8TG40|KAD6_CANAL Putative adenylate kinase HBR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=HBR1 PE=2 SV=1

 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/182 (43%), Positives = 118/182 (64%), Gaps = 10/182 (5%)

Query: 1   MAQDSKRSRPNILVTGTPGTGKTT---------TSTALAEST-QLRHINIGELVREKNLH 50
           M   S+R  PNI++TGTPG GK++           T   E+T   +H NI E+ +E++  
Sbjct: 1   MTTMSRRYTPNIIITGTPGCGKSSHSSSLVSQLNQTLGKETTIHFKHFNISEIAKERDCI 60

Query: 51  DGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYD 110
           + +D +L+  +++ED + D LE  +E+GG +VD+H CD FPER  D VVVL+T+NS L+D
Sbjct: 61  ESYDAKLDTSIVDEDKLLDSLEPDLEKGGVVVDWHCCDIFPERLIDLVVVLRTDNSNLFD 120

Query: 111 RLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVR 170
           RL  R Y   KL  N++CEI +V+L+EAK+SY  DIV+ L+SDT E++  N+  ++ WV 
Sbjct: 121 RLKTRNYNDLKLQENLDCEIMEVILQEAKDSYIPDIVIELRSDTAEEMDENVDRISSWVE 180

Query: 171 NW 172
            W
Sbjct: 181 TW 182

May be involved in rRNA processing and ribosome biosynthesis (By similarity). Induces transcription of mating-type proteins ALPHA1 and ALPHA2 and moderately represses transcription of mating-type protein A1 in response to hemoglobin and growth signals. Involved in the induction of a high affinity fibronectin receptor by sub-inhibitory dosages of caspofungin.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9UU88|KAD6_SCHPO Putative adenylate kinase fap7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fap7 PE=3 SV=1

 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 120/170 (70%)

Query: 4   DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVIN 63
           + +R  PNI++ GTPGTGKTT +  +AE+T+L +I IG++V+E +LH G+D++ + + ++
Sbjct: 3   NEERELPNIIICGTPGTGKTTLAEQVAETTELENICIGDVVKENHLHFGFDEKWKTYDVD 62

Query: 64  EDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLT 123
           ED V D LE  + +GG I+D+H C  F E   D VVVL+T++S L++RL  RGY+  K+ 
Sbjct: 63  EDKVLDYLEPKLLKGGCIIDWHTCGLFSEELIDLVVVLRTDHSKLWERLESRGYSLEKIQ 122

Query: 124 NNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQ 173
            N E EI Q+ LEEA+ES+   IV+ L S++IE++  N++ +T WV NW+
Sbjct: 123 ENNEAEIMQICLEEARESFDPKIVVELPSESIEEMESNLSRITQWVTNWK 172

May be involved in rRNA processing and ribosome biosynthesis and in transcription regulation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
225435224	383	PREDICTED: uncharacterized protein LOC10	0.988	0.454	0.851	1e-79
297746214	175	unnamed protein product [Vitis vinifera]	0.994	1.0	0.846	6e-79
147780724	175	hypothetical protein VITISV_002854 [Viti	0.994	1.0	0.846	2e-78
255570797	177	Adenylate kinase isoenzyme, putative [Ri	1.0	0.994	0.813	9e-77
388522153	179	unknown [Lotus japonicus]	0.954	0.938	0.833	2e-73
449463663	176	PREDICTED: probable adenylate kinase iso	1.0	1.0	0.778	6e-73
356499120	179	PREDICTED: probable adenylate kinase iso	0.977	0.960	0.796	7e-73
365222946	177	Hop-interacting protein THI105 [Solanum	0.965	0.960	0.788	3e-72
48210055	177	Adenylate kinase isoenzyme 6 , putative	0.988	0.983	0.777	3e-72
351721424	179	uncharacterized protein LOC100306226 [Gl	1.0	0.983	0.761	7e-71

>gi|225435224|ref|XP_002282115.1| PREDICTED: uncharacterized protein LOC100253475 [Vitis vinifera]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 149/175 (85%), Positives = 169/175 (96%), Gaps = 1/175 (0%)

Query: 1   MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECH 60
           MAQ+S R +PNILVTGTPGTGKTTTS +LAE+TQLRHINIGELVREKNLHDGWDD+ +CH
Sbjct: 1   MAQNS-RKKPNILVTGTPGTGKTTTSFSLAEATQLRHINIGELVREKNLHDGWDDQFDCH 59

Query: 61  VINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGA 120
           +INEDLVCDELED+ME+GGNIVDYHGCDFFPERWFDRVVVLQT+NSVLYDRL+ RGYTG+
Sbjct: 60  IINEDLVCDELEDLMEEGGNIVDYHGCDFFPERWFDRVVVLQTDNSVLYDRLSTRGYTGS 119

Query: 121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPR 175
           KL+NNIECEIFQVLLEEAKESYPED+V+ALKSDT++DITRN+A LTDWVR+WQP+
Sbjct: 120 KLSNNIECEIFQVLLEEAKESYPEDVVVALKSDTVDDITRNVASLTDWVRSWQPK 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746214|emb|CBI16270.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (763), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 149/176 (84%), Positives = 170/176 (96%), Gaps = 1/176 (0%)

Query: 1   MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECH 60
           MAQ+S R +PNILVTGTPGTGKTTTS +LAE+TQLRHINIGELVREKNLHDGWDD+ +CH
Sbjct: 1   MAQNS-RKKPNILVTGTPGTGKTTTSFSLAEATQLRHINIGELVREKNLHDGWDDQFDCH 59

Query: 61  VINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGA 120
           +INEDLVCDELED+ME+GGNIVDYHGCDFFPERWFDRVVVLQT+NSVLYDRL+ RGYTG+
Sbjct: 60  IINEDLVCDELEDLMEEGGNIVDYHGCDFFPERWFDRVVVLQTDNSVLYDRLSTRGYTGS 119

Query: 121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS 176
           KL+NNIECEIFQVLLEEAKESYPED+V+ALKSDT++DITRN+A LTDWVR+WQP++
Sbjct: 120 KLSNNIECEIFQVLLEEAKESYPEDVVVALKSDTVDDITRNVASLTDWVRSWQPKA 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780724|emb|CAN60320.1| hypothetical protein VITISV_002854 [Vitis vinifera]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/176 (84%), Positives = 169/176 (96%), Gaps = 1/176 (0%)

Query: 1   MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECH 60
           MAQ+S R +PNILVTGTPGTGKTTTS +LAE+TQLRHINIGELVREKNLHDGWDD+ +CH
Sbjct: 1   MAQNS-RKKPNILVTGTPGTGKTTTSFSLAEATQLRHINIGELVREKNLHDGWDDQFDCH 59

Query: 61  VINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGA 120
           +INEDLVCDELED+ME+GGNIVDYHGCDFFPERWFDRVVVLQT+NSVLYDRL+ RGYTG+
Sbjct: 60  IINEDLVCDELEDLMEEGGNIVDYHGCDFFPERWFDRVVVLQTDNSVLYDRLSTRGYTGS 119

Query: 121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS 176
           KL+NNIECEIFQVLLEEAKESYPED V+ALKSDT++DITRN+A LTDWVR+WQP++
Sbjct: 120 KLSNNIECEIFQVLLEEAKESYPEDXVVALKSDTVDDITRNVASLTDWVRSWQPKA 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570797|ref|XP_002526351.1| Adenylate kinase isoenzyme, putative [Ricinus communis] gi|223534310|gb|EEF36022.1| Adenylate kinase isoenzyme, putative [Ricinus communis]

 Score =  291 bits (744), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 144/177 (81%), Positives = 168/177 (94%), Gaps = 1/177 (0%)

Query: 1   MAQDS-KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELEC 59
           MAQD+ KR +PN+L+TGTPGTGKTTTS+ALAE+TQ RHINIG+LV+EKNLHDGWDD+ +C
Sbjct: 1   MAQDNNKRRKPNLLITGTPGTGKTTTSSALAEATQFRHINIGDLVKEKNLHDGWDDQFDC 60

Query: 60  HVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTG 119
           H+INEDLVCDELEDIME+GGNIVDYHGCDFFPERWFDRVVVLQTENS+L+DRL+KRGY+ 
Sbjct: 61  HIINEDLVCDELEDIMEEGGNIVDYHGCDFFPERWFDRVVVLQTENSILFDRLSKRGYSQ 120

Query: 120 AKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS 176
            K+TNNIECEIFQVLLEEAKE+Y EDIV+AL+SD++EDITRN+A LTDWVR+WQP S
Sbjct: 121 NKITNNIECEIFQVLLEEAKENYAEDIVMALRSDSVEDITRNVATLTDWVRSWQPVS 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522153|gb|AFK49138.1| unknown [Lotus japonicus]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 140/168 (83%), Positives = 159/168 (94%)

Query: 6   KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINED 65
           KR+RPNILVTGTPGTGKTT S++LAE+TQLRHIN+G+LV+EKNLHDGWDDEL+C V+NED
Sbjct: 7   KRTRPNILVTGTPGTGKTTLSSSLAEATQLRHINVGDLVKEKNLHDGWDDELDCFVLNED 66

Query: 66  LVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN 125
           LVCDELED+ME+GGNIVDYHGCDFFPERWFD VVVLQT N+VLYDRL++RGY  AKL+NN
Sbjct: 67  LVCDELEDVMEEGGNIVDYHGCDFFPERWFDCVVVLQTGNTVLYDRLSRRGYNEAKLSNN 126

Query: 126 IECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQ 173
           +ECEIFQVLLEEAKESYPED V+A+KSDTIEDI+RNIA LTDWVRNW 
Sbjct: 127 VECEIFQVLLEEAKESYPEDRVVAMKSDTIEDISRNIATLTDWVRNWS 174

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463663|ref|XP_004149551.1| PREDICTED: probable adenylate kinase isoenzyme 6-like [Cucumis sativus] gi|449508667|ref|XP_004163377.1| PREDICTED: probable adenylate kinase isoenzyme 6-like [Cucumis sativus]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 137/176 (77%), Positives = 161/176 (91%)

Query: 1   MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECH 60
           M QD KR RPNIL+TGTPGTGKTTTS+ALA++ QLRH++IG+LV+EK+LHDGWDDEL+C+
Sbjct: 1   MPQDRKRQRPNILITGTPGTGKTTTSSALADAAQLRHVSIGDLVKEKSLHDGWDDELQCY 60

Query: 61  VINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGA 120
           VINEDLVCDELED+ME+GG IVDYHGCDFFPERWFDRVVVLQTENS+LYDRLTKRGY GA
Sbjct: 61  VINEDLVCDELEDLMEEGGIIVDYHGCDFFPERWFDRVVVLQTENSILYDRLTKRGYEGA 120

Query: 121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS 176
           KL+NNIECEIFQ+LLEEAKE+Y E+IV+AL+SDT+ED+  N+  L +W  NWQP S
Sbjct: 121 KLSNNIECEIFQILLEEAKENYEENIVVALRSDTVEDVASNVETLANWANNWQPLS 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499120|ref|XP_003518391.1| PREDICTED: probable adenylate kinase isoenzyme 6-like [Glycine max]

 Score =  278 bits (711), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 160/172 (93%)

Query: 1   MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECH 60
           + ++ KR +PNILVTGTPGTGKTT  TALAE+TQLRHIN+GELV+EKNLHDGWDDEL+CH
Sbjct: 2   VQENGKRKKPNILVTGTPGTGKTTMCTALAEATQLRHINVGELVKEKNLHDGWDDELDCH 61

Query: 61  VINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGA 120
           V+NEDLVCDELED+ME+GGNIVDYHGCDFFPERWFD VVVLQT+N+VLYDRL++RGY  +
Sbjct: 62  VLNEDLVCDELEDVMEEGGNIVDYHGCDFFPERWFDCVVVLQTDNTVLYDRLSRRGYKDS 121

Query: 121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           KL+NNIECEIFQVLLEEAKESY E+ ++A+KSD IEDI+RN+A LTDWVRNW
Sbjct: 122 KLSNNIECEIFQVLLEEAKESYSEEKLIAMKSDNIEDISRNVATLTDWVRNW 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365222946|gb|AEW69825.1| Hop-interacting protein THI105 [Solanum lycopersicum]

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 134/170 (78%), Positives = 161/170 (94%)

Query: 5   SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE 64
           S R RPNIL+TGTPGTGKTTTS+ALAE+TQLRHINIGELV+EK LHDGWDD L+C++INE
Sbjct: 6   SSRRRPNILITGTPGTGKTTTSSALAEATQLRHINIGELVKEKKLHDGWDDTLDCYIINE 65

Query: 65  DLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN 124
           DLVCDELED+ME GGNIVD+HGCDFFPERWFDRVVVLQT+N+VLYDRL++RGYTG KLTN
Sbjct: 66  DLVCDELEDMMETGGNIVDHHGCDFFPERWFDRVVVLQTDNTVLYDRLSRRGYTGQKLTN 125

Query: 125 NIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQP 174
           NIECEIFQ+LLEEAK+SYPEDIV+AL+SD+IEDI++N+ ++++W+ +W P
Sbjct: 126 NIECEIFQILLEEAKDSYPEDIVVALRSDSIEDISKNVEMMSNWISSWNP 175

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48210055|gb|AAT40554.1| Adenylate kinase isoenzyme 6 , putative [Solanum demissum]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 136/175 (77%), Positives = 164/175 (93%), Gaps = 1/175 (0%)

Query: 1   MAQDSK-RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELEC 59
           MA +S  R RPNIL+TGTPGTGKTTTS+ALAE+TQLRHINIGELV+EK LHDGWDD L+C
Sbjct: 1   MAHNSSSRRRPNILITGTPGTGKTTTSSALAEATQLRHINIGELVKEKKLHDGWDDTLDC 60

Query: 60  HVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTG 119
           ++INEDLVCDELEDIME GGNIVD+HGCDFFPERWFDRVVVLQT+N+VLYDRL++RGYTG
Sbjct: 61  YIINEDLVCDELEDIMEAGGNIVDHHGCDFFPERWFDRVVVLQTDNTVLYDRLSRRGYTG 120

Query: 120 AKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQP 174
            KLTNNIECEIFQ+LLEEAK+SYPEDIV+AL+SD++EDI++N+ ++++W+ +W P
Sbjct: 121 QKLTNNIECEIFQILLEEAKDSYPEDIVVALRSDSVEDISKNVEMMSNWIGSWNP 175

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721424|ref|NP_001235673.1| uncharacterized protein LOC100306226 [Glycine max] gi|255627937|gb|ACU14313.1| unknown [Glycine max]

 Score =  271 bits (693), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 134/176 (76%), Positives = 160/176 (90%)

Query: 1   MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECH 60
           + ++ KR +PNILVTGTPGTGKTT  TALAE+TQL HIN+GELV+EKNLHDGWDDEL+C+
Sbjct: 2   VQENGKRKKPNILVTGTPGTGKTTVCTALAEATQLCHINVGELVKEKNLHDGWDDELDCY 61

Query: 61  VINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGA 120
           ++NEDLVCDELED+ME+GGNIVDYHGCDFFPERWFD VVVLQT+N++LYDRL++RGY  +
Sbjct: 62  LLNEDLVCDELEDVMEEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKDS 121

Query: 121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS 176
           KL+NNIECEIFQVLLEEAKESY E+ V+A+KSD IED++RN+A LTDWVRNW   S
Sbjct: 122 KLSNNIECEIFQVLLEEAKESYSEEKVIAMKSDNIEDVSRNVATLTDWVRNWSLPS 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
DICTYBASE|DDB_G0278493	175	DDB_G0278493 "unknown" [Dictyo	0.971	0.977	0.473	2e-47
ZFIN|ZDB-GENE-040625-113	174	zgc:86811 "zgc:86811" [Danio r	0.931	0.942	0.506	2.2e-43
UNIPROTKB|Q5F4A8	171	LOC425215 "Uncharacterized pro	0.931	0.959	0.518	7.3e-43
UNIPROTKB|F1SK34	172	LOC100515933 "Uncharacterized	0.926	0.947	0.527	4e-42
UNIPROTKB|A5PJA1	172	TAF9 "Adenylate kinase isoenzy	0.926	0.947	0.515	1.7e-41
UNIPROTKB|Q9Y3D8	172	TAF9 "Adenylate kinase isoenzy	0.926	0.947	0.496	1.7e-41
UNIPROTKB|Q9TTU2	172	TAF9 "Adenylate kinase isoenzy	0.926	0.947	0.509	3.6e-41
UNIPROTKB|Q5EB68	172	Taf9 "Adenylate kinase isoenzy	0.926	0.947	0.496	8.7e-40
WB|WBGene00008458	182	E02H1.6 [Caenorhabditis elegan	0.920	0.890	0.469	7.2e-36
FB|FBgn0033754	175	Ak6 "Adenylate kinase 6" [Dros	0.982	0.988	0.393	2.4e-35

DICTYBASE|DDB_G0278493 DDB_G0278493 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 81/171 (47%), Positives = 121/171 (70%)

Query:     6 KRSRPNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINED 65
             KR++PNIL+              +A + ++ HI+I   V+EK LHDGWD E +C++++ED
Sbjct:     4 KRNKPNILITGTPGTGKTSLAGVIASNNEMNHIDISSAVKEKELHDGWDSEFQCYILDED 63

Query:    66 LVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN 125
              VCDE ED+M +GGN+VD+HGC++FPERWFD V+VL+T+  +L DRL KR Y   K+TNN
Sbjct:    64 KVCDEFEDVMVKGGNVVDHHGCEWFPERWFDLVIVLRTDIKILNDRLEKRNYNQHKITNN 123

Query:   126 IECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS 176
             ++CEI QV+L+EA+ SY ++IV+ L S T+ED   N   ++ W++NW  ++
Sbjct:   124 LDCEIMQVILDEARNSYKQEIVVELPSTTLEDNENNQNFISQWIQNWYEKN 174

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0030490 "maturation of SSU-rRNA" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040625-113 zgc:86811 "zgc:86811" [Danio rerio (taxid:7955)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 83/164 (50%), Positives = 112/164 (68%)

Query:     9 RPNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVC 68
             RPNIL+              LA+ T L ++N+G+L +E  L DG+D+E +C +++ED V 
Sbjct:     6 RPNILLTGTPGVGKTTLGKELAQRTGLTYVNVGDLAQEAELFDGFDEEYQCPILDEDRVV 65

Query:    69 DELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC 128
             DELED M  GG I+DYHGCDFFPERWF  V VL+T+N+ LY+RL  RGYTG KL +N++C
Sbjct:    66 DELEDQMGDGGVIIDYHGCDFFPERWFHIVFVLRTDNTNLYNRLESRGYTGKKLQDNVQC 125

Query:   129 EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
             EIFQ + EEA E+Y E+IV  L S+T ED+ RN+  +  W+  W
Sbjct:   126 EIFQTIFEEAVEAYKEEIVHQLPSNTPEDLERNLEQIVQWIEQW 169

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5F4A8 LOC425215 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 85/164 (51%), Positives = 111/164 (67%)

Query:     9 RPNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVC 68
             RPNIL+              LA  T L +I++G+L +E+ L++G+D+E EC +++ED V 
Sbjct:     3 RPNILLTGTPGVGKSTLGKELASRTGLTYISVGDLAKEEELYEGFDEEYECPILDEDRVI 62

Query:    69 DELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC 128
             DELED M +GG IVDYHGCDFFPE WF  V VL+T+NS LYDRL  RGY G KL +NI+C
Sbjct:    63 DELEDKMREGGVIVDYHGCDFFPEHWFHIVFVLRTDNSFLYDRLESRGYKGKKLQDNIQC 122

Query:   129 EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
             EIFQ L EEA  SY ++IV  L S+T ED+ RN+  +  W+  W
Sbjct:   123 EIFQTLYEEAMLSYRKEIVHQLPSNTPEDLERNLDQIVQWIEQW 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SK34 LOC100515933 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 86/163 (52%), Positives = 109/163 (66%)

Query:    10 PNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
             PNIL+              LA  + L++IN+G+L RE  L+DG+D+E +C +++ED V D
Sbjct:     4 PNILLTGTPGVGKTTLGKELASRSGLKYINVGDLAREGQLYDGYDEEYDCPILDEDRVVD 63

Query:    70 ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
             ELE+ M +GG IVDYHGCDFFPERWF  V VL+T+NSVLY RL  RGY   KL +NI+CE
Sbjct:    64 ELENQMSEGGVIVDYHGCDFFPERWFHIVFVLKTDNSVLYKRLETRGYNEKKLKDNIQCE 123

Query:   130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
             IFQVL EEA  SY E+IV  L SD  ED+  NI  +  W+  W
Sbjct:   124 IFQVLYEEALASYKEEIVHQLPSDKPEDLEDNINQILKWIEQW 166

GO:0005524 "ATP binding" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

UNIPROTKB|A5PJA1 TAF9 "Adenylate kinase isoenzyme 6" [Bos taurus (taxid:9913)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 84/163 (51%), Positives = 110/163 (67%)

Query:    10 PNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
             PNIL+              LA  + L++IN+G+L RE  L+DG+D+E +C +++ED V D
Sbjct:     4 PNILLTGTPGVGKTTLGKELASRSGLKYINVGDLAREGQLYDGYDEEYDCPILDEDRVVD 63

Query:    70 ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
             ELE+ M +GG IVDYHGCDFFPERWF  V VL+T+NS+LY RL  RGY   KL +NI+CE
Sbjct:    64 ELENQMSEGGVIVDYHGCDFFPERWFHIVFVLKTDNSILYKRLENRGYNEKKLKDNIQCE 123

Query:   130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
             IFQVL EEA  SY E+IV  L S+  ED+  NI  +  W+ +W
Sbjct:   124 IFQVLHEEALASYKEEIVHQLPSNKPEDLEDNINQILKWIEHW 166

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0015030 "Cajal body" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

UNIPROTKB|Q9Y3D8 TAF9 "Adenylate kinase isoenzyme 6" [Homo sapiens (taxid:9606)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 81/163 (49%), Positives = 111/163 (68%)

Query:    10 PNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
             PNIL+              LA  + L++IN+G+L RE+ L+DG+D+E +C +++ED V D
Sbjct:     4 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 63

Query:    70 ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
             EL++ M +GG IVDYHGCDFFPERWF  V VL+T+ +VLY+RL  RGY   KLT+NI+CE
Sbjct:    64 ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 123

Query:   130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
             IFQVL EEA  SY E+IV  L S+  E++  N+  +  W+  W
Sbjct:   124 IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 166

GO:0005524 "ATP binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0004017 "adenylate kinase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9TTU2 TAF9 "Adenylate kinase isoenzyme 6" [Oryctolagus cuniculus (taxid:9986)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 83/163 (50%), Positives = 108/163 (66%)

Query:    10 PNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
             PNIL+              LA  + L+++N+G+L RE  L+DG+D+E  C +++ED V D
Sbjct:     4 PNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGELYDGFDEEYNCPILDEDRVID 63

Query:    70 ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
             EL+  M  GG IVDYHGCDFFPERWF  V VL+TE SVLY RL  RGY+  KL +NI+CE
Sbjct:    64 ELDTQMRDGGVIVDYHGCDFFPERWFHIVFVLRTETSVLYKRLETRGYSEKKLNDNIQCE 123

Query:   130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
             IFQVL EEA ESY E+IV  L S+  E++  NI+ +  W+  W
Sbjct:   124 IFQVLYEEAMESYKEEIVHQLPSNKPEELEENISQILKWIEQW 166

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0015030 "Cajal body" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

UNIPROTKB|Q5EB68 Taf9 "Adenylate kinase isoenzyme 6" [Rattus norvegicus (taxid:10116)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 81/163 (49%), Positives = 107/163 (65%)

Query:    10 PNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
             PNIL+              LA  + L+++N+G+L RE +L+DG+D+E  C +++ED V D
Sbjct:     4 PNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGHLYDGYDEEYGCPILDEDRVVD 63

Query:    70 ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
             ELE  M +GG IVDYHGCDFFPERWF  V VL+T+N +LY RL  RGY   KL +NI+CE
Sbjct:    64 ELEPQMTEGGVIVDYHGCDFFPERWFHIVFVLRTDNGILYKRLETRGYHEKKLQDNIQCE 123

Query:   130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
             IFQVL EEA  SY E+IV  L S+  E +  NI  ++ W+  W
Sbjct:   124 IFQVLYEEAMASYKEEIVHQLPSNEPEQLEDNINQISKWIEQW 166

GO:0004017 "adenylate kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISS

GO:0015030 "Cajal body" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

WB|WBGene00008458 E02H1.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 77/164 (46%), Positives = 100/164 (60%)

Query:     1 MAQDSKRSRPNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECH 60
             MA    R RPNILV              +AE      I + + VRE NL   +D++  CH
Sbjct:     1 MATPETRRRPNILVTGSPGTGKSTLGQQVAEKLGFVFIEVSKEVRENNLQGDFDEQYNCH 60

Query:    61 VINEDLVCDELEDIME--QGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYT 118
             V++ED + D + D ++  +GG +VDYHGCD FPERWFD VVVL+     LYDRL  RGY+
Sbjct:    61 VLDEDKLLDHISDRLDSDEGGIVVDYHGCDLFPERWFDVVVVLRCPTEKLYDRLQSRGYS 120

Query:   119 GAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162
               K+  N+ECEIF  LLEEA+ESY EDIV  L+S+T E +  N+
Sbjct:   121 EFKIKENVECEIFGTLLEEARESYSEDIVHELQSETTEQMEENL 164

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

FB|FBgn0033754 Ak6 "Adenylate kinase 6" [Drosophila melanogaster (taxid:7227)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 68/173 (39%), Positives = 105/173 (60%)

Query:     1 MAQDSKRSRPNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECH 60
             M++     +PNIL+              +A   +   ++  ++ +EKN  + +D+E +C 
Sbjct:     1 MSEPEPDVKPNILITGTPGAGKSYLCERIASELKFEWLDCSKIAKEKNFVEEYDEEYDCP 60

Query:    61 VINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGA 120
             +++E+ + D LE +M +GGN+V+YHGCDFFPERWF  V V+   N+ LYDRL +R Y   
Sbjct:    61 ILDEEKLMDHLEPLMAKGGNVVEYHGCDFFPERWFQAVFVVTCPNTTLYDRLKERNYNEK 120

Query:   121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQ 173
             KL +NI+CEIF  +LEEA++SY  DIV  LK +T  D   +I  + +W R W+
Sbjct:   121 KLASNIQCEIFGTILEEARDSYKSDIVFELKGETKADAHISIKTVKNWYRMWK 173

GO:0004017 "adenylate kinase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8U1S1	KAD6_PYRFU	2, ., 7, ., 4, ., 3	0.3146	0.8579	0.8388	yes	no
Q9UU88	KAD6_SCHPO	2, ., 7, ., 4, ., 3	0.4529	0.9659	0.9714	yes	no
Q9TTU2	KAD6_RABIT	2, ., 7, ., 4, ., 3	0.5644	0.9261	0.9476	yes	no
Q9Y3D8	KAD6_HUMAN	2, ., 7, ., 4, ., 3	0.5521	0.9261	0.9476	yes	no
Q54Y03	KAD6_DICDI	2, ., 7, ., 4, ., 3	0.5263	0.9715	0.9771	yes	no
Q46FV0	KAD6_METBF	2, ., 7, ., 4, ., 3	0.3006	0.8636	0.8351	yes	no
Q5JG26	KAD6_PYRKO	2, ., 7, ., 4, ., 3	0.3294	0.8295	0.8248	yes	no
A5PJA1	KAD6_BOVIN	2, ., 7, ., 4, ., 3	0.5705	0.9261	0.9476	yes	no
Q5EB68	KAD6_RAT	2, ., 7, ., 4, ., 3	0.5521	0.9261	0.9476	yes	no
Q8VCP8	KAD6_MOUSE	2, ., 7, ., 4, ., 3	0.5582	0.9261	0.9476	yes	no
Q9FJI1	AAK6_ARATH	2, ., 7, ., 4, ., 3	0.6941	0.9659	0.9550	yes	no
Q12055	KAD6_YEAST	2, ., 7, ., 4, ., 3	0.4058	0.9602	0.8578	yes	no
Q09527	KAD6_CAEEL	2, ., 7, ., 4, ., 3	0.5182	0.9204	0.8901	yes	no
O58998	KAD6_PYRHO	2, ., 7, ., 4, ., 3	0.3063	0.8295	0.8111	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.963
3rd Layer	2.7.1	0.691
4th Layer	2.7.1.71	LOW CONFIDENCE prediction!
3rd Layer	2.7.4.3	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024485001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (175 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034077001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (177 aa)				•		•			0.809
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•	•		•		0.792
	GSVIVG00034779001	SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (467 aa)				•			•		0.718
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•					0.701
	GSVIVG00028106001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (308 aa)				•	•		•		0.697
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•					0.675
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•					0.663
	GSVIVG00020651001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (263 aa)				•			•		0.650
	GSVIVG00026600001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa)				•					0.636
	GSVIVG00024190001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (105 aa)				•	•				0.630

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
COG1936	180	COG1936, COG1936, Predicted nucleotide kinase (rel	2e-40
pfam13238	128	pfam13238, AAA_18, AAA domain	2e-27
PRK03839	180	PRK03839, PRK03839, putative kinase; Provisional	2e-19
pfam13207	114	pfam13207, AAA_17, AAA domain	2e-15
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	5e-07
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	2e-05
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	6e-05
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	2e-04
COG1102	179	COG1102, Cmk, Cytidylate kinase [Nucleotide transp	5e-04
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	6e-04
PRK00440	319	PRK00440, rfc, replication factor C small subunit;	6e-04
TIGR01351	210	TIGR01351, adk, adenylate kinase	7e-04
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	0.001
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	0.002
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	0.002
cd02021	150	cd02021, GntK, Gluconate kinase (GntK) catalyzes t	0.002
pfam13521	162	pfam13521, AAA_28, AAA domain	0.003

>gnl|CDD|224847 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

 Score =  134 bits (340), Expect = 2e-40
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
             I +TGTPG GKTT    L E    + I + EL +E  L+  +D+  +  +++ D +  
Sbjct: 1   MLIAITGTPGVGKTTVCKLLRE-LGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRK 59

Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
            LE+++ +G  IVD H     P+   D VVVL+ +  VLY+RL  RGY+  K+  N+E E
Sbjct: 60  RLEELLREGSGIVDSHLSHLLPD--CDLVVVLRADPEVLYERLKGRGYSEEKILENVEAE 117

Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQP 174
           I  V+L EA E +   I +   + + E++   I  +    R  + 
Sbjct: 118 ILDVILIEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGGGRKKRV 162

Length = 180

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 99.8 bits (249), Expect = 2e-27
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 13/131 (9%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL--ECHVINEDLVCD 69
           IL+TGTPG+GKTT +  LAE        + +L +E  L    D+E+  E   ++ED +  
Sbjct: 1   ILITGTPGSGKTTLAKELAERL---GDVLRDLAKENGLVLELDEEITDESKRLDEDKLAK 57

Query: 70  ELE-------DIMEQGGNIVDYHGCDFFPERWFDRV-VVLQTENSVLYDRLTKRGYTGAK 121
            L+       ++ E    I+D H  +   ER+ D V VVL+ +   L +RL KRGY+  K
Sbjct: 58  LLDKLEKIIEELAEGENVIIDGHLAELELERFKDLVFVVLRADPEELLERLKKRGYSEEK 117

Query: 122 LTNNIECEIFQ 132
           ++ N E EI +
Sbjct: 118 ISENDEAEILK 128

Length = 128

>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional

 Score = 80.1 bits (198), Expect = 2e-19
 Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDEL 71
           I +TGTPG GKTT S  LAE     ++++ E   +K + +  DDE+E          D+L
Sbjct: 3   IAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDF-------DKL 55

Query: 72  EDIMEQ---GGNIV-DYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE 127
              +E+     N+V D H     P    D V+VL+    ++ +RL +RGY+  K+  N+E
Sbjct: 56  AYFIEEEFKEKNVVLDGHLSHLLPV---DYVIVLRAHPKIIKERLKERGYSKKKILENVE 112

Query: 128 CEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162
            E+  V L EA E   + I +     T E++   I
Sbjct: 113 AELVDVCLCEALEEKEKVIEVDTTGKTPEEVVEEI 147

Length = 180

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 68.5 bits (167), Expect = 2e-15
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDEL 71
           IL+TG PG+GK+T +  LAE   +  I++ +L+RE+ L +  D EL+   I+ +L+ + L
Sbjct: 2   ILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEEIL 61

Query: 72  EDIMEQGGNIVDYHGCDFFPERW--FDRVVVLQTENSVLYDRLTKR 115
           +++ +Q   ++D         R    D VV L         RL KR
Sbjct: 62  DELAKQEW-VIDGVRESTLELRLEEADLVVFLDLPLPACRFRLLKR 106

Length = 114

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 46/141 (32%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDE 70
            IL+ G PG+GK T +  LA+   L HI+ G+L+RE              + +   +  +
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLRE-------------EIASGTELGKK 47

Query: 71  LEDIMEQGG----------------NIVDYHGC--DFFP------ERWF---------DR 97
            ++ ++ G                       G   D FP      E            D+
Sbjct: 48  AKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDK 107

Query: 98  VVVLQTENSVLYDRLTKRGYT 118
           V+ L   + VL +R+  R   
Sbjct: 108 VIELDVPDEVLIERILGRRIC 128

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE 46
          I ++G PG+GKTT +  LAE   L+H++ GE+ RE
Sbjct: 3  ITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRE 37

Length = 180

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 5  SKRSRP-NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-NLHDGWDDELECHVI 62
           K   P  I++ G PG GK T +  L++   L+HIN+G ++RE+         E++  V 
Sbjct: 1  MKLKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVT 60

Query: 63 NEDLVCDEL 71
          + +LV D L
Sbjct: 61 SGNLVPDNL 69

Length = 229

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 8   SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE--- 64
           S+P IL+ G PG GK T S+ LAE   + H+  G+ +R     D  D + E     E   
Sbjct: 2   SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMD 61

Query: 65  --DLVCDEL-EDIMEQGGNIVDYHGCDFFPERW-----------FDRVVVLQTENSVLYD 110
             +LV D +  +I+E+  +  D    D +P               D V+ L      L D
Sbjct: 62  AGELVPDAVVNEIVEEALSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVD 121

Query: 111 RLTKR 115
           RLT R
Sbjct: 122 RLTGR 126

Length = 215

>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE 46
          I ++G PG+GKTT +  LAE   L+ ++ G + RE
Sbjct: 3  ITISGLPGSGKTTVARELAEHLGLKLVSAGTIFRE 37

Length = 179

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 18/83 (21%)

Query: 7  RSRPNILVTGTPGTGKTTTSTALAE----------STQLRHINIGELVREKNLHDGWDDE 56
              N+L+ G PGTGKTT + A+A                 +  G +V E   H      
Sbjct: 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLL 76

Query: 57 LECHVINED-----LVCDELEDI 74
           E   + E      L  DE++ +
Sbjct: 77 FE---LAEKAKPGVLFIDEIDSL 96

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 6  KRSRPNILVTGTPGTGKTTTSTALA 30
          +++ P++L  G PGTGKTT + ALA
Sbjct: 35 EKNMPHLLFAGPPGTGKTTAALALA 59

Length = 319

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 27/128 (21%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE---KNLHDGWDDELEC-HVINE-D 65
            +++ G PG+GK T +  +AE   L HI+ G+L+R         G     +    + + +
Sbjct: 1   RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLG----KKAKEYMEKGE 56

Query: 66  LVCDEL-----EDIMEQGGNIVDYHGCDFFP-------------ERWFDRVVVLQTENSV 107
           LV DE+     ++ + Q  +  +    D FP             +   D V+ L   +  
Sbjct: 57  LVPDEIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEE 116

Query: 108 LYDRLTKR 115
           L +RL+ R
Sbjct: 117 LVERLSGR 124

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 8/52 (15%)

Query: 12 ILVTGTPGTGKTTTSTALAESTQLR--HINIGELV------REKNLHDGWDD 55
          +L+ G PGTGKTT + A+A+        I+  ELV       EK L + ++ 
Sbjct: 1  LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEA 52

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE 46
          I ++G PG+GKTT +  LAE   L+ I+ G++ RE
Sbjct: 3  ITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRE 37

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 31/127 (24%)

Query: 16  GTPGTGKTTTSTALAESTQLRHINIGELVREK--------NLHDGWDD--ELECHVINED 65
           G PG GK T +  LAE   + HI+ G+++R+             G+ D  EL    +  D
Sbjct: 8   GPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLD 67

Query: 66  LVCDELEDIMEQGGNIVDYHGCDFFPER----------------WFDRVVVLQTENSVLY 109
           LV + L+      G I+D      FP +                  +RVV L   + V+ 
Sbjct: 68  LVQERLQQPDAANGWILDG-----FPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVV 122

Query: 110 DRLTKRG 116
           +RL  RG
Sbjct: 123 ERLLARG 129

Length = 184

>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 12 ILVTGTPGTGKTTTSTALAESTQLRHIN 39
          I+V G  G+GK+T   ALAE      I+
Sbjct: 2  IVVMGVSGSGKSTVGKALAERLGAPFID 29

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. Length = 150

>gnl|CDD|222194 pfam13521, AAA_28, AAA domain

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 12 ILVTGTPGTGKTTTSTALAE 31
          I++TG P TGKTT   ALA 
Sbjct: 2  IVITGGPSTGKTTLLEALAA 21

Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	100.0
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.96
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.87
PRK03839	180	putative kinase; Provisional	99.86
PRK14532	188	adenylate kinase; Provisional	99.85
PLN02200	234	adenylate kinase family protein	99.85
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.85
PRK14531	183	adenylate kinase; Provisional	99.84
PRK13948	182	shikimate kinase; Provisional	99.84
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.84
PRK13808	333	adenylate kinase; Provisional	99.83
PRK14527	191	adenylate kinase; Provisional	99.83
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.83
PRK14528	186	adenylate kinase; Provisional	99.83
PRK00131	175	aroK shikimate kinase; Reviewed	99.82
PRK13949	169	shikimate kinase; Provisional	99.82
PLN02674	244	adenylate kinase	99.82
PRK05057	172	aroK shikimate kinase I; Reviewed	99.82
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.81
PRK13947	171	shikimate kinase; Provisional	99.81
PRK04182	180	cytidylate kinase; Provisional	99.81
PRK00625	173	shikimate kinase; Provisional	99.8
PRK14530	215	adenylate kinase; Provisional	99.8
PLN02459	261	probable adenylate kinase	99.79
PLN02199	303	shikimate kinase	99.78
PRK02496	184	adk adenylate kinase; Provisional	99.78
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.77
PRK00279	215	adk adenylate kinase; Reviewed	99.77
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.77
PRK13946	184	shikimate kinase; Provisional	99.77
PRK14529	223	adenylate kinase; Provisional	99.76
PTZ00088	229	adenylate kinase 1; Provisional	99.76
PRK14526	211	adenylate kinase; Provisional	99.75
PRK03731	171	aroL shikimate kinase II; Reviewed	99.73
PRK04040	188	adenylate kinase; Provisional	99.72
PRK01184	184	hypothetical protein; Provisional	99.72
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.72
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.72
PRK06762	166	hypothetical protein; Provisional	99.72
PRK06217	183	hypothetical protein; Validated	99.72
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.72
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.71
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.71
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.7
PRK08118	167	topology modulation protein; Reviewed	99.7
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.69
PRK13973	213	thymidylate kinase; Provisional	99.69
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.67
PTZ00451	244	dephospho-CoA kinase; Provisional	99.66
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.66
PLN02842	505	nucleotide kinase	99.66
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.65
PRK08233	182	hypothetical protein; Provisional	99.65
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.65
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.64
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.64
PRK13975	196	thymidylate kinase; Provisional	99.63
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.63
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.62
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.62
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.62
PRK08356	195	hypothetical protein; Provisional	99.62
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.61
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.6
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.6
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.6
PRK00023	225	cmk cytidylate kinase; Provisional	99.6
PLN02422	232	dephospho-CoA kinase	99.59
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.59
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.59
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.59
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.58
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.58
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.58
PRK07261	171	topology modulation protein; Provisional	99.56
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.56
PRK00698	205	tmk thymidylate kinase; Validated	99.55
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.54
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.54
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	99.54
PRK05541	176	adenylylsulfate kinase; Provisional	99.53
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.53
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.52
PRK14737	186	gmk guanylate kinase; Provisional	99.52
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.51
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.51
PRK05480	209	uridine/cytidine kinase; Provisional	99.51
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.51
PLN02924	220	thymidylate kinase	99.5
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.5
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.5
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.5
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.49
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.49
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.47
PRK09825	176	idnK D-gluconate kinase; Provisional	99.47
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.47
PRK13974	212	thymidylate kinase; Provisional	99.47
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.47
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.45
PRK11545	163	gntK gluconate kinase 1; Provisional	99.43
PRK07933	213	thymidylate kinase; Validated	99.43
PRK03846	198	adenylylsulfate kinase; Provisional	99.43
PRK13976	209	thymidylate kinase; Provisional	99.42
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.42
PRK12338	319	hypothetical protein; Provisional	99.42
PRK14738	206	gmk guanylate kinase; Provisional	99.42
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	99.41
PHA02530	300	pseT polynucleotide kinase; Provisional	99.41
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.4
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.4
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.39
PRK00300	205	gmk guanylate kinase; Provisional	99.39
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.38
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.37
PRK06547	172	hypothetical protein; Provisional	99.37
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	99.36
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.36
PRK00889	175	adenylylsulfate kinase; Provisional	99.35
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.34
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.34
PTZ00301	210	uridine kinase; Provisional	99.34
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.33
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.31
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.3
COG0645	170	Predicted kinase [General function prediction only	99.3
PRK06696	223	uridine kinase; Validated	99.28
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.28
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.28
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.28
COG1660	286	Predicted P-loop-containing kinase [General functi	99.27
PHA00729	226	NTP-binding motif containing protein	99.25
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.23
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.23
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.22
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.21
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.17
PRK07667	193	uridine kinase; Provisional	99.17
COG3709	192	Uncharacterized component of phosphonate metabolis	99.16
PLN02348	395	phosphoribulokinase	99.14
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.13
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.11
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.09
PRK05439	311	pantothenate kinase; Provisional	99.08
PRK07429	327	phosphoribulokinase; Provisional	99.07
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.05
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.05
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.03
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.01
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.01
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.01
PLN02772	398	guanylate kinase	98.95
COG4639	168	Predicted kinase [General function prediction only	98.95
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.95
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.9
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.9
PRK15453	290	phosphoribulokinase; Provisional	98.89
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.86
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.85
PHA03132	580	thymidine kinase; Provisional	98.84
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.84
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.83
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.8
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	98.76
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.75
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.73
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	98.72
PF00004	132	AAA: ATPase family associated with various cellula	98.71
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	98.68
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.67
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.67
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.65
PLN02318	656	phosphoribulokinase/uridine kinase	98.65
PLN02165	334	adenylate isopentenyltransferase	98.62
KOG3062	281	consensus RNA polymerase II elongator associated p	98.61
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.6
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.58
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.56
PRK09087	226	hypothetical protein; Validated	98.55
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.5
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.47
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.47
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.46
PLN02840	421	tRNA dimethylallyltransferase	98.46
PRK06893	229	DNA replication initiation factor; Validated	98.45
CHL00176	638	ftsH cell division protein; Validated	98.43
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.43
PRK06761	282	hypothetical protein; Provisional	98.42
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.42
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.41
CHL00195	489	ycf46 Ycf46; Provisional	98.41
PRK09169	2316	hypothetical protein; Validated	98.39
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.39
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.38
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	98.36
smart00382	148	AAA ATPases associated with a variety of cellular	98.36
KOG3308	225	consensus Uncharacterized protein of the uridine k	98.36
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.35
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	98.34
COG3911	183	Predicted ATPase [General function prediction only	98.34
PRK06620	214	hypothetical protein; Validated	98.34
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	98.34
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	98.33
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.33
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.33
PLN02748	468	tRNA dimethylallyltransferase	98.33
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.32
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.31
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	98.31
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.3
PRK08084	235	DNA replication initiation factor; Provisional	98.3
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	98.3
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.3
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.28
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	98.28
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	98.26
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.26
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.25
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.24
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.24
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	98.23
PF13173	128	AAA_14: AAA domain	98.22
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	98.21
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.21
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.21
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.2
PRK05642	234	DNA replication initiation factor; Validated	98.2
PHA03136	378	thymidine kinase; Provisional	98.2
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.19
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.18
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.17
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	98.16
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	98.16
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.15
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.15
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.15
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	98.14
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	98.14
CHL00206	2281	ycf2 Ycf2; Provisional	98.12
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.12
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.11
PF13245	76	AAA_19: Part of AAA domain	98.1
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	98.1
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	98.1
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	98.09
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.09
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	98.09
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.09
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.09
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.08
PF05729	166	NACHT: NACHT domain	98.07
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.07
PHA02244	383	ATPase-like protein	98.07
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.06
PRK04195	482	replication factor C large subunit; Provisional	98.05
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	98.05
PF07726	131	AAA_3: ATPase family associated with various cellu	98.05
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.05
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.04
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	98.04
PLN02796	347	D-glycerate 3-kinase	98.03
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.03
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.03
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.03
PRK13342	413	recombination factor protein RarA; Reviewed	98.02
CHL00181	287	cbbX CbbX; Provisional	98.02
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	98.01
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.01
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.01
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	98.01
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.99
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.99
PRK08727	233	hypothetical protein; Validated	97.98
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.98
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.97
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.97
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.97
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	97.97
PHA03135	343	thymidine kinase; Provisional	97.96
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.95
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.95
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.95
PRK06526	254	transposase; Provisional	97.94
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.93
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.93
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.92
PRK12377	248	putative replication protein; Provisional	97.92
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.91
PRK08181	269	transposase; Validated	97.91
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.91
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.91
PLN03046	460	D-glycerate 3-kinase; Provisional	97.9
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.9
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.89
PRK12402	337	replication factor C small subunit 2; Reviewed	97.89
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.89
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.89
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.88
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.88
PRK10646	153	ADP-binding protein; Provisional	97.88
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	97.88
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.88
PRK09183	259	transposase/IS protein; Provisional	97.87
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.87
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.87
PLN03025	319	replication factor C subunit; Provisional	97.87
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.86
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	97.86
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.86
PHA02624	647	large T antigen; Provisional	97.86
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.85
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.85
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.85
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	97.83
CHL00095	821	clpC Clp protease ATP binding subunit	97.83
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.83
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.82
COG0802	149	Predicted ATPase or kinase [General function predi	97.82
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.82
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	97.82
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.81
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	97.81
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.81
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.8
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	97.8
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.8
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.8
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.79
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.78
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.78
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	97.77
COG1855	604	ATPase (PilT family) [General function prediction	97.77
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.77
PRK13341	725	recombination factor protein RarA/unknown domain f	97.77
PHA02544	316	44 clamp loader, small subunit; Provisional	97.76
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.76
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.76
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	97.76
PRK15455	644	PrkA family serine protein kinase; Provisional	97.75
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.75
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.74
COG4240	300	Predicted kinase [General function prediction only	97.74
PRK08116	268	hypothetical protein; Validated	97.74
cd03116	159	MobB Molybdenum is an essential trace element in t	97.74
PRK13695	174	putative NTPase; Provisional	97.73
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.73
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.73
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.73
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.73
PRK06835	329	DNA replication protein DnaC; Validated	97.73
PRK08939	306	primosomal protein DnaI; Reviewed	97.73
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.72
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.72
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.72
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.72
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.72
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.71
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.71
PRK13768	253	GTPase; Provisional	97.71
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.71
PRK07952	244	DNA replication protein DnaC; Validated	97.71
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.7
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.7
COG0714	329	MoxR-like ATPases [General function prediction onl	97.7
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	97.7
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.69
PRK10416	318	signal recognition particle-docking protein FtsY;	97.69
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.69
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.69
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.69
PHA03134	340	thymidine kinase; Provisional	97.68
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.68
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.68
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.68
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.68
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.68
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.68
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.68
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.68
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.68
PRK14974	336	cell division protein FtsY; Provisional	97.68
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.68
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.68
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.67
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.67
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.67
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.67
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.66
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.66
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.66
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.66
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.66
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.66
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.66
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.66
PRK13851	344	type IV secretion system protein VirB11; Provision	97.66
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.65
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.65
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	97.65
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.65
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.65
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.65
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.65
cd01128	249	rho_factor Transcription termination factor rho is	97.65
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.65
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.65
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.64
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	97.64
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.64
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.64
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.64
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.64
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.64
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.64
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.64
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.64
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.63
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.63
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.63
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.63
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.63
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.63
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.62
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.62
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	97.62
cd03246	173	ABCC_Protease_Secretion This family represents the	97.62
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.62
PRK04296	190	thymidine kinase; Provisional	97.62
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.62
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.62
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.62
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.61
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	97.61
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.61
CHL00095	821	clpC Clp protease ATP binding subunit	97.61
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.61
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.61
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.6
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.6
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.6
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.6
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.6
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	97.6
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.6
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.6
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.6
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.6
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.59
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.59
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.59
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.59
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.59
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.59
PRK13764	602	ATPase; Provisional	97.59
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.59
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.59
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.59
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.58
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.58
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	97.58
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.58
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.58
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.58
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.58
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.58
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	97.58
PRK10908	222	cell division protein FtsE; Provisional	97.58
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.57
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.57
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.57
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.57
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.57
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	97.57
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.57
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.56
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.56
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.56
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.56
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.56
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.56
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.56
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.56
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	97.55
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.55
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.55
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.55
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.55
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.55
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.55
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	97.55
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.55
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.55
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.55
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.55
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	97.55
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	97.55
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.54
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.54
KOG2028	554	consensus ATPase related to the helicase subunit o	97.54
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	97.54

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.1e-33  Score=187.07  Aligned_cols=168  Identities=61%  Similarity=1.072  Sum_probs=160.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHG   86 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~   86 (176)
                      +-.+.|+|+|-||+||||+|..||+.+|+++++.++++++...+..+++.++..+++++.+++.++..+..+|.|+|+|.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~IVDyHg   84 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGGNIVDYHG   84 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCCcEEeecc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHH
Q 030477           87 CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILT  166 (176)
Q Consensus        87 ~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~  166 (176)
                      .+.||..++|+||+|.||..++.+|+..|+++...+.++.+.+++..+.++..+.|.+..+......+.++....+.+++
T Consensus        85 Cd~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~~~iV~eL~s~~~Eem~~ni~ri~  164 (176)
T KOG3347|consen   85 CDFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYSPKIVVELQSETKEEMESNISRIL  164 (176)
T ss_pred             cCccchhheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcCCcceeecCcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999889999999999999999999999999999988888899999999999


Q ss_pred             HHHHhhcc
Q 030477          167 DWVRNWQP  174 (176)
Q Consensus       167 ~~~~~~~~  174 (176)
                      +|.+.|.+
T Consensus       165 ~w~~~w~~  172 (176)
T KOG3347|consen  165 NWTRMWKK  172 (176)
T ss_pred             HHHHHHhh
Confidence            99999974

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.96  E-value=5.3e-28  Score=164.58  Aligned_cols=161  Identities=33%  Similarity=0.527  Sum_probs=145.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDF   89 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~   89 (176)
                      ++|.|+|.||+||||+|+.|+ ++|+.+++..+++.........++...++..+.+.+...+...+..++.|+|+|...+
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~hl   79 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSHL   79 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhhc
Confidence            579999999999999999998 8999999999999999988888887888888999999999887777889999999999


Q ss_pred             CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477           90 FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus        90 ~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                      ++.  +|+||+|.++|+++.+|+..|||+.+++.+|.+.+.+.-.+.+..+.+.+...+++.+.|++++.+.+..++++-
T Consensus        80 ~~~--~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~~  157 (180)
T COG1936          80 LPD--CDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGGG  157 (180)
T ss_pred             CCC--CCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHccc
Confidence            983  799999999999999999999999999999999999999999999888666777777779999999999999875


Q ss_pred             Hhhc
Q 030477          170 RNWQ  173 (176)
Q Consensus       170 ~~~~  173 (176)
                      +.|.
T Consensus       158 ~~~~  161 (180)
T COG1936         158 RKKR  161 (180)
T ss_pred             ccCC
Confidence            5544

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.87  E-value=4.3e-22  Score=137.02  Aligned_cols=154  Identities=25%  Similarity=0.347  Sum_probs=100.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhhhccccc-chH-HHHHHHHH----HhhcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDELECHVI-NED-LVCDELED----IMEQGG   79 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~-~l~~~i~~----~~~~~~   79 (176)
                      ++.|+|+|++||||||+++.||+.|+++|+|.|.++....-.   +-+......+|. .+. .+.+....    +..+||
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG   81 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG   81 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence            467999999999999999999999999999999998775321   112222222333 122 22222222    124566


Q ss_pred             eEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHHH
Q 030477           80 NIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIED  157 (176)
Q Consensus        80 ~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~e  157 (176)
                      +|+.......+..  ...+|||++|++++.+|+.. +..+|........+.+..+++++.+.|.+  +.++..+..+ ++
T Consensus        82 ~v~~~enr~~l~~--~g~vv~L~~~~e~l~~Rl~~-~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~~~~~-~~  157 (172)
T COG0703          82 AVLSEENRNLLKK--RGIVVYLDAPFETLYERLQR-DRKRPLLQTEDPREELEELLEERQPLYREVADFIIDTDDRS-EE  157 (172)
T ss_pred             cccCHHHHHHHHh--CCeEEEEeCCHHHHHHHhcc-ccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecCCCCc-HH
Confidence            6665555555554  34799999999999999983 33344444333346688999999999998  3444444334 55


Q ss_pred             HHHHHHHHH
Q 030477          158 ITRNIAILT  166 (176)
Q Consensus       158 v~~~i~~~~  166 (176)
                      +.+.+...+
T Consensus       158 v~~~i~~~l  166 (172)
T COG0703         158 VVEEILEAL  166 (172)
T ss_pred             HHHHHHHHH
Confidence            555555444

>PRK03839 putative kinase; Provisional

Probab=99.86  E-value=3.6e-20  Score=131.04  Aligned_cols=148  Identities=28%  Similarity=0.426  Sum_probs=92.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCCC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFF   90 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~~   90 (176)
                      .|+|+|+|||||||+++.|++++|++++++|++++.......+......   ....+...+.....+.++|+|.+.....
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~vIidG~~~~l~   78 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEI---DFDKLAYFIEEEFKEKNVVLDGHLSHLL   78 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhc---CHHHHHHHHHHhccCCCEEEEecccccc
Confidence            6999999999999999999999999999999998776443333222211   1123333333333456788986543322


Q ss_pred             CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC-CCcEEEecC--CCHHHHHHHHHHHHH
Q 030477           91 PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP-EDIVLALKS--DTIEDITRNIAILTD  167 (176)
Q Consensus        91 ~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~--~s~~ev~~~i~~~~~  167 (176)
                         .++.+|||+++++++.+|+..|+..++...+.... .+....  ..+.|. ...++.++.  .+++++.+.+...++
T Consensus        79 ---~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~-~~~~~~--~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~  152 (180)
T PRK03839         79 ---PVDYVIVLRAHPKIIKERLKERGYSKKKILENVEA-ELVDVC--LCEALEEKEKVIEVDTTGKTPEEVVEEILELIK  152 (180)
T ss_pred             ---CCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHH--HHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHh
Confidence               26789999999999999999887533222211111 111110  011121 223344444  489988888877664

>PRK14532 adenylate kinase; Provisional

Probab=99.85  E-value=3.8e-20  Score=131.74  Aligned_cols=152  Identities=20%  Similarity=0.371  Sum_probs=101.5

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHHHHHHh----hcCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDELEDIM----EQGGN   80 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~i~~~~----~~~~~   80 (176)
                      .|+|.|+|||||||+|+.|++++|+.+++.+++++.... ....+.....     ..+..+.+.+.+...+    .++++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~   81 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA   81 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence            589999999999999999999999999999999987521 1122211111     1123344444444432    45789


Q ss_pred             EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccch--hHHHHHHHHHHHHH---
Q 030477           81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN--IECEIFQVLLEEAK---  139 (176)
Q Consensus        81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~--~~~~~~~~~~~~~~---  139 (176)
                      |+|     .||+.                .++.+|+|++|++++.+|+..|.....+..+.  .-..++..++....   
T Consensus        82 vld-----g~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~  156 (188)
T PRK14532         82 IFD-----GFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLL  156 (188)
T ss_pred             EEe-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999     44431                36789999999999999999885322222222  22345666655553   


Q ss_pred             hcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477          140 ESYPE-DIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       140 ~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                      +.|.. +.++.+++. +++++.+.|...++
T Consensus       157 ~~y~~~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        157 PYYAGQGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             HHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            45654 567778774 89999988887763

>PLN02200 adenylate kinase family protein

Probab=99.85  E-value=1.8e-19  Score=132.00  Aligned_cols=166  Identities=14%  Similarity=0.261  Sum_probs=103.8

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHHh---
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDIM---   75 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~~---   75 (176)
                      ++..+.+|+|+|+|||||||+|+.|++++|+++++.+++++..... ...+.....     -.+..+...+.+...+   
T Consensus        39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~  118 (234)
T PLN02200         39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS  118 (234)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            3445678999999999999999999999999999999999875322 111111111     1123344444443322   


Q ss_pred             hcCCeEEcCCCCC-----CCC---CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHH---HHhcC
Q 030477           76 EQGGNIVDYHGCD-----FFP---ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEE---AKESY  142 (176)
Q Consensus        76 ~~~~~vid~~~~~-----~~~---~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~---~~~~~  142 (176)
                      ...++|+|+.-..     .+.   ...++.+|+|++|++++.+|+.+|+..  +..++.+  ..++..+...   ....|
T Consensus       119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~--r~dd~~e~~~~Rl~~y~~~~~pv~~~y  196 (234)
T PLN02200        119 DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQG--RVDDNIDTIKKRLKVFNALNLPVIDYY  196 (234)
T ss_pred             CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2357999953110     000   113788999999999999999988642  2222221  1233333332   23345


Q ss_pred             CC-CcEEEecCC-CHHHHHHHHHHHHHHHHhh
Q 030477          143 PE-DIVLALKSD-TIEDITRNIAILTDWVRNW  172 (176)
Q Consensus       143 ~~-~~~i~~~~~-s~~ev~~~i~~~~~~~~~~  172 (176)
                      .. +.++.+|+. ++++|.+.+..++....+-
T Consensus       197 ~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~~  228 (234)
T PLN02200        197 SKKGKLYTINAVGTVDEIFEQVRPIFAACEAM  228 (234)
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHHcCCc
Confidence            44 456777766 8999999999888665443

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.85  E-value=9.7e-20  Score=125.24  Aligned_cols=158  Identities=21%  Similarity=0.386  Sum_probs=113.7

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC--CCchhhhccc-----ccchHHHHHHHHHHh--
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH--DGWDDELECH-----VINEDLVCDELEDIM--   75 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~l~~~i~~~~--   75 (176)
                      .+.++++|++.|+|||||-|+|..+++++|+.++++++++|.....  ..++.....+     +...+.+++.++..+  
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~   83 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS   83 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence            3457899999999999999999999999999999999999987543  2233222222     123345555555533  


Q ss_pred             --hcCCeEEcCCCCCCCCCC-------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHH--HHHHHHHHHH
Q 030477           76 --EQGGNIVDYHGCDFFPER-------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC--EIFQVLLEEA  138 (176)
Q Consensus        76 --~~~~~vid~~~~~~~~~~-------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~--~~~~~~~~~~  138 (176)
                        ...+++||     +||++             .+++++|++|+.+++.+|+..|+....+..++.+.  .++..+....
T Consensus        84 ~~~~~~fLID-----GyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t  158 (195)
T KOG3079|consen   84 SGDSNGFLID-----GYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKST  158 (195)
T ss_pred             cCCCCeEEec-----CCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcc
Confidence              22448999     78874             26799999999999999999999864566555543  2344443333


Q ss_pred             ---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477          139 ---KESYPE-DIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       139 ---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                         .+.|.. +.+..++.. ++++|-..+.++++
T Consensus       159 ~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id  192 (195)
T KOG3079|consen  159 LPVIEYYEKKGKLLKINAERSVDDVFEEVVTAID  192 (195)
T ss_pred             hHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhh
Confidence               345665 677788876 89999988888775

>PRK14531 adenylate kinase; Provisional

Probab=99.84  E-value=1.6e-19  Score=128.06  Aligned_cols=150  Identities=27%  Similarity=0.492  Sum_probs=100.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHHHHHHh---hcCCe
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDELEDIM---EQGGN   80 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~i~~~~---~~~~~   80 (176)
                      +.|+|+|+|||||||+++.|++++|+++++.+++++.... ....+.....     ..+.+..+...+...+   ...++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~   82 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW   82 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence            4699999999999999999999999999999999887532 2223222211     1234444555554333   34689


Q ss_pred             EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH---Hhc
Q 030477           81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA---KES  141 (176)
Q Consensus        81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~  141 (176)
                      |+|     ++|+.                .++.+++|++|++++.+|+..|++.... . ..-..++..+....   ...
T Consensus        83 ilD-----Gfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~-~-e~i~~Rl~~y~~~~~pv~~~  155 (183)
T PRK14531         83 LLD-----GFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDN-E-AVIRNRLEVYREKTAPLIDH  155 (183)
T ss_pred             EEe-----CCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCC-H-HHHHHHHHHHHHHHHHHHHH
Confidence            999     55543                2567999999999999999988753221 1 11123444443333   345


Q ss_pred             CCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477          142 YPE-DIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       142 ~~~-~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                      |.. +.++.+++. +++++.+.+...+
T Consensus       156 y~~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        156 YRQRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             HHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            554 466777775 8888888887654

>PRK13948 shikimate kinase; Provisional

Probab=99.84  E-value=1.7e-20  Score=132.23  Aligned_cols=159  Identities=18%  Similarity=0.179  Sum_probs=101.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhhhcccccc-hHHHHHHHHH----H-hh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDELECHVIN-EDLVCDELED----I-ME   76 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~~~i~~----~-~~   76 (176)
                      +.++..|+|+|++||||||+++.|++.+|++++|.|.++......   +.+......++.. +..+++.+..    + ..
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~   86 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISL   86 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence            557789999999999999999999999999999999887654321   1111111112211 1122222211    1 12


Q ss_pred             cCCeEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCCCH
Q 030477           77 QGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTI  155 (176)
Q Consensus        77 ~~~~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~  155 (176)
                      +++++++......+..  ...+|||++|++++.+|+..+  .++........+.+..+++.+.+.|.. +.++++++.++
T Consensus        87 GgG~v~~~~n~~~l~~--~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~t~~~~~  162 (182)
T PRK13948         87 GGGTFMHEENRRKLLS--RGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNEREPVYRQATIHVSTDGRRS  162 (182)
T ss_pred             CCcEEcCHHHHHHHHc--CCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCH
Confidence            3344443323233333  356999999999999999543  234443222235678888888888865 67777777799


Q ss_pred             HHHHHHHHHHHHH
Q 030477          156 EDITRNIAILTDW  168 (176)
Q Consensus       156 ~ev~~~i~~~~~~  168 (176)
                      +++.+.|...+..
T Consensus       163 ~ei~~~i~~~l~~  175 (182)
T PRK13948        163 EEVVEEIVEKLWA  175 (182)
T ss_pred             HHHHHHHHHHHHH
Confidence            9988888777644

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.84  E-value=3.7e-19  Score=126.13  Aligned_cols=156  Identities=21%  Similarity=0.402  Sum_probs=97.2

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHHhh---cCCeE
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDIME---QGGNI   81 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~~~---~~~~v   81 (176)
                      +|+|+|+|||||||+|+.|++++|+.+++.+++++..... ...+.....     ..+..+.+.+.+...+.   +.++|
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            5899999999999999999999999999999998876431 122221111     12334444555554332   45799


Q ss_pred             EcCCCCC---------CCC-CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHH---HhcCCC-C
Q 030477           82 VDYHGCD---------FFP-ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEA---KESYPE-D  145 (176)
Q Consensus        82 id~~~~~---------~~~-~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~-~  145 (176)
                      +|.....         .+. ...++.+|+|++|++++.+|+..|+....+..++.+  ..++..+....   .+.|.. +
T Consensus        81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~  160 (183)
T TIGR01359        81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG  160 (183)
T ss_pred             EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9953210         000 014678999999999999999988753222222221  12233232222   233443 3


Q ss_pred             cEEEecCC-CHHHHHHHHHHHH
Q 030477          146 IVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       146 ~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                      .++.+|+. +++++.+.+.+++
T Consensus       161 ~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       161 KVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            55666665 8889888887765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK13808 adenylate kinase; Provisional

Probab=99.83  E-value=7.2e-19  Score=133.49  Aligned_cols=156  Identities=21%  Similarity=0.341  Sum_probs=104.1

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHHHHHHh----hcCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDELEDIM----EQGGN   80 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~i~~~~----~~~~~   80 (176)
                      .|+|+|||||||||+++.|++.+|+.+++.+++++.... ....+.....     .....+.+...+...+    ...+|
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~   81 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF   81 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence            589999999999999999999999999999999986421 1222221111     1233445555554433    34689


Q ss_pred             EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCC------CccccchhH--HHHHHHHHH
Q 030477           81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYT------GAKLTNNIE--CEIFQVLLE  136 (176)
Q Consensus        81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~------~~~~~~~~~--~~~~~~~~~  136 (176)
                      |||     +||++                .+|++|+|++|++++.+|+..|...      ..+.+++.+  ..++..+..
T Consensus        82 ILD-----GFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~  156 (333)
T PRK13808         82 ILD-----GFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRA  156 (333)
T ss_pred             EEe-----CCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHH
Confidence            999     66654                4789999999999999999987321      112222221  123433333


Q ss_pred             HH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHHHHHh
Q 030477          137 EA---KESYPE-DIVLALKSD-TIEDITRNIAILTDWVRN  171 (176)
Q Consensus       137 ~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~~~~  171 (176)
                      ..   ...|.+ +.++.+|+. ++++|.+.|..+++.+..
T Consensus       157 ~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~  196 (333)
T PRK13808        157 QTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA  196 (333)
T ss_pred             HhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence            32   345665 467788876 789999999999976543

>PRK14527 adenylate kinase; Provisional

Probab=99.83  E-value=7.2e-19  Score=125.50  Aligned_cols=157  Identities=20%  Similarity=0.308  Sum_probs=103.2

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhh----ccc-ccchHHHHHHHHHHhh--
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDEL----ECH-VINEDLVCDELEDIME--   76 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~----~~~-~~~~~~l~~~i~~~~~--   76 (176)
                      .+.++++|+|+|+|||||||+|+.|++++|+.+++.+++++.... ....+...    ... ....+.+...+...+.  
T Consensus         2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~   81 (191)
T PRK14527          2 TQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM   81 (191)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            345789999999999999999999999999999999999876432 11222111    111 1233445555555443  


Q ss_pred             -cCCeEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchh--HHHHHHHHHHH
Q 030477           77 -QGGNIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI--ECEIFQVLLEE  137 (176)
Q Consensus        77 -~~~~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~--~~~~~~~~~~~  137 (176)
                       ..++|+|     +||+.                .++.+++|++|++++.+|+.+|+....+..++.  -..++..+...
T Consensus        82 ~~~~~VlD-----Gfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~  156 (191)
T PRK14527         82 EPVRVIFD-----GFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQ  156 (191)
T ss_pred             CCCcEEEc-----CCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHH
Confidence             2569999     34432                256789999999999999999875433433322  12234334333


Q ss_pred             HH---hcCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477          138 AK---ESYPE-DIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       138 ~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                      ..   ..|.+ +.++.+++. +++++.+.+...+
T Consensus       157 ~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        157 TQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             hHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            32   35665 567778776 8988888877653

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.83  E-value=3.2e-19  Score=120.32  Aligned_cols=159  Identities=20%  Similarity=0.259  Sum_probs=103.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCch-hhhccccc---chHHHHHHH-HHHhhcCCeEEcC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWD-DELECHVI---NEDLVCDEL-EDIMEQGGNIVDY   84 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~i-~~~~~~~~~vid~   84 (176)
                      ++|.|.|+|||||||+++.||+++|+++++.+.++++........ .++..+.-   .-+...+.- ..+...+++|++.
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~nvVleg   80 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGNVVLEG   80 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCCeEEhh
Confidence            478999999999999999999999999999999988874322221 12221111   112222222 2234578999998


Q ss_pred             CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHH-HHH-HhcCCC--------CcEEEecCCC
Q 030477           85 HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLL-EEA-KESYPE--------DIVLALKSDT  154 (176)
Q Consensus        85 ~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~--------~~~i~~~~~s  154 (176)
                      +...++.+..+++-|||.+|..++.+|+.+|..  ....+........... ..+ ...|.-        +.+++++.-+
T Consensus        81 rLA~Wi~k~~adlkI~L~Apl~vRa~Ria~REg--i~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~  158 (179)
T COG1102          81 RLAGWIVREYADLKIWLKAPLEVRAERIAKREG--IDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWD  158 (179)
T ss_pred             hhHHHHhccccceEEEEeCcHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCC
Confidence            887777776788999999999999999998863  2222111111111111 111 123443        3666666668


Q ss_pred             HHHHHHHHHHHHHHHH
Q 030477          155 IEDITRNIAILTDWVR  170 (176)
Q Consensus       155 ~~ev~~~i~~~~~~~~  170 (176)
                      ++++...+...++...
T Consensus       159 ~~~v~~il~~aid~~~  174 (179)
T COG1102         159 PEEVFLILLDAIDALS  174 (179)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9888888877776543

>PRK14528 adenylate kinase; Provisional

Probab=99.83  E-value=3.6e-19  Score=126.48  Aligned_cols=151  Identities=21%  Similarity=0.325  Sum_probs=100.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccc-----cchHHHHHHHHH----HhhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHV-----INEDLVCDELED----IMEQGG   79 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~l~~~i~~----~~~~~~   79 (176)
                      +.|+|+|+|||||||+|+.|++++|+++++.+++++.... ....+.....++     .....+...+.+    .....+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            6799999999999999999999999999999999877532 222222211111     122333333333    323467


Q ss_pred             eEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHH---
Q 030477           80 NIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEA---  138 (176)
Q Consensus        80 ~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~---  138 (176)
                      +|+|     ++|+.                .++.+|+|++|++++.+|+..|.....+..++.+  ..++..+....   
T Consensus        82 ~viD-----G~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv  156 (186)
T PRK14528         82 FLLD-----GFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPL  156 (186)
T ss_pred             EEEe-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHH
Confidence            9999     44432                3789999999999999999988654334333332  23444444433   


Q ss_pred             HhcCCC-CcEEEecCC-CHHHHHHHHHHH
Q 030477          139 KESYPE-DIVLALKSD-TIEDITRNIAIL  165 (176)
Q Consensus       139 ~~~~~~-~~~i~~~~~-s~~ev~~~i~~~  165 (176)
                      ...|.. +.++.+++. ++++|.+.+...
T Consensus       157 ~~~y~~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        157 LDFYAAQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             HHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence            345665 567788876 899888887654

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.82  E-value=3.7e-19  Score=124.98  Aligned_cols=156  Identities=22%  Similarity=0.278  Sum_probs=95.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh----cccccchHHHHHHHHHHhhcCCeE
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL----ECHVINEDLVCDELEDIMEQGGNI   81 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~v   81 (176)
                      |.+++.|+|+|+|||||||+|+.|++.+|+++++.|++....... .....+    ...+.  +...+.+..+....++|
T Consensus         1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~-~~~~~~~~~g~~~~~--~~~~~~~~~l~~~~~~v   77 (175)
T PRK00131          1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK-SIPEIFEEEGEAAFR--ELEEEVLAELLARHNLV   77 (175)
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC-CHHHHHHHHCHHHHH--HHHHHHHHHHHhcCCCE
Confidence            567889999999999999999999999999999999887653211 111100    00000  11122233333332333


Q ss_pred             EcC--------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEec
Q 030477           82 VDY--------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALK  151 (176)
Q Consensus        82 id~--------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~  151 (176)
                      +..        .....+..  ...+|||++|++++.+|+..|.. ++........+.+..++..+.+.|..  +.+++++
T Consensus        78 i~~g~~~~~~~~~r~~l~~--~~~~v~l~~~~~~~~~R~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~  154 (175)
T PRK00131         78 ISTGGGAVLREENRALLRE--RGTVVYLDASFEELLRRLRRDRN-RPLLQTNDPKEKLRDLYEERDPLYEEVADITVETD  154 (175)
T ss_pred             EEeCCCEeecHHHHHHHHh--CCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCC
Confidence            321        11112211  35789999999999999987653 22222111223455555555554433  5778888


Q ss_pred             CCCHHHHHHHHHHHHH
Q 030477          152 SDTIEDITRNIAILTD  167 (176)
Q Consensus       152 ~~s~~ev~~~i~~~~~  167 (176)
                      +.+++++.+.|...++
T Consensus       155 ~~~~~e~~~~I~~~v~  170 (175)
T PRK00131        155 GRSPEEVVNEILEKLE  170 (175)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            8899999888888875

>PRK13949 shikimate kinase; Provisional

Probab=99.82  E-value=3.8e-20  Score=129.41  Aligned_cols=149  Identities=19%  Similarity=0.218  Sum_probs=91.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC--C-chhhhccccc-chHHHHHHHHHHhhcCCeEE-cC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD--G-WDDELECHVI-NEDLVCDELEDIMEQGGNIV-DY   84 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~-~~~~l~~~i~~~~~~~~~vi-d~   84 (176)
                      ..|+|.|+|||||||+++.|++.+|+++++.|.++.......  . +.......+. .+..++..   +....++|+ ..
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~---l~~~~~~vis~G   78 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHE---VAEFEDVVISTG   78 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHH---HHhCCCEEEEcC
Confidence            579999999999999999999999999999998876542110  0 1111111111 11122222   222234444 22


Q ss_pred             -------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchh---HHHHHHHHHHHHHhcCCC-CcEEEecCC
Q 030477           85 -------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI---ECEIFQVLLEEAKESYPE-DIVLALKSD  153 (176)
Q Consensus        85 -------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~i~~~~~  153 (176)
                             .....++.  .+.+|||++|++++.+|+..+...+|......   ..+.+..+++.+.+.|.. +.++++++.
T Consensus        79 gg~~~~~~~~~~l~~--~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~~~~  156 (169)
T PRK13949         79 GGAPCFFDNMELMNA--SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNADKL  156 (169)
T ss_pred             CcccCCHHHHHHHHh--CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEECCCC
Confidence                   22223333  46899999999999999985443344442211   123456677888887776 567777777


Q ss_pred             CHHHHHHHHH
Q 030477          154 TIEDITRNIA  163 (176)
Q Consensus       154 s~~ev~~~i~  163 (176)
                      +++++.+.|.
T Consensus       157 ~~~e~~~~I~  166 (169)
T PRK13949        157 EDESQIEQLV  166 (169)
T ss_pred             CHHHHHHHHH
Confidence            8876666554

>PLN02674 adenylate kinase

Probab=99.82  E-value=5.7e-19  Score=129.25  Aligned_cols=155  Identities=20%  Similarity=0.377  Sum_probs=104.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhcccc-----cchHHHHHHHHHHh----h
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECHV-----INEDLVCDELEDIM----E   76 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~l~~~i~~~~----~   76 (176)
                      ...+.|+|.|||||||||+|+.|++++|+++++.+++++... .....+.....++     ...+.+...+...+    .
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence            445789999999999999999999999999999999998763 2223333222221     23344444454433    3


Q ss_pred             cCCeEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCC---------------------
Q 030477           77 QGGNIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTG---------------------  119 (176)
Q Consensus        77 ~~~~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~---------------------  119 (176)
                      ..++|+|     +||++                .++.+|+|++|.+++.+|+..|....                     
T Consensus       109 ~~g~ilD-----GfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~  183 (244)
T PLN02674        109 QKGFILD-----GFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDV  183 (244)
T ss_pred             CCcEEEe-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccc
Confidence            4689999     77764                36789999999999999999883210                     


Q ss_pred             ------ccccchhH--HHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477          120 ------AKLTNNIE--CEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       120 ------~~~~~~~~--~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                            .+..++.+  ..++..+....   .+.|.. +.++.+++. ++++|.+.|..++
T Consensus       184 ~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        184 TGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             cCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence                  01111111  23444444433   345766 577788876 8999999888765

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.82  E-value=6.9e-20  Score=128.54  Aligned_cols=155  Identities=19%  Similarity=0.245  Sum_probs=99.0

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCch---hh-hccccc-chHHHHHHHHHHhhcCCe
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWD---DE-LECHVI-NEDLVCDELEDIMEQGGN   80 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~-~~~~l~~~i~~~~~~~~~   80 (176)
                      |.++..|+|.|++||||||+++.|++.+|+++++.|..+...... ...   .. ....+. .+..+++.+   ....++
T Consensus         1 ~~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~-~i~~~~~~~g~~~fr~~e~~~l~~l---~~~~~~   76 (172)
T PRK05057          1 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA-DIGWVFDVEGEEGFRDREEKVINEL---TEKQGI   76 (172)
T ss_pred             CCCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCc-CHhHHHHHhCHHHHHHHHHHHHHHH---HhCCCE
Confidence            345678999999999999999999999999999999765543211 111   10 111111 112222222   222333


Q ss_pred             EEcC--------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEe
Q 030477           81 IVDY--------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLAL  150 (176)
Q Consensus        81 vid~--------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~  150 (176)
                      |+..        .....+..  .+.+|||++|++++.+|+..+.. +|...+....+.+..+++.+.+.|..  +.++++
T Consensus        77 vi~~ggg~v~~~~~~~~l~~--~~~vv~L~~~~e~~~~Ri~~~~~-rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~idt  153 (172)
T PRK05057         77 VLATGGGSVKSRETRNRLSA--RGVVVYLETTIEKQLARTQRDKK-RPLLQVDDPREVLEALANERNPLYEEIADVTIRT  153 (172)
T ss_pred             EEEcCCchhCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEEEC
Confidence            3321        11223332  46799999999999999985543 34443222234577788888888876  677777


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 030477          151 KSDTIEDITRNIAILTD  167 (176)
Q Consensus       151 ~~~s~~ev~~~i~~~~~  167 (176)
                      +..+++++.+.+.+.++
T Consensus       154 ~~~s~~ei~~~i~~~l~  170 (172)
T PRK05057        154 DDQSAKVVANQIIHMLE  170 (172)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            77799998888776653

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.81  E-value=3.6e-18  Score=121.38  Aligned_cols=161  Identities=20%  Similarity=0.322  Sum_probs=100.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhc----c-cccchHHHHHHHHHH----h-h
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELE----C-HVINEDLVCDELEDI----M-E   76 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~-~~~~~~~l~~~i~~~----~-~   76 (176)
                      +.++|+|.|+|||||||+++.|++++|+.+++.+++++..... ...+....    . .....+.+.+.+...    + .
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT   81 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence            4579999999999999999999999999999999988775321 11111111    1 112233344444432    2 3


Q ss_pred             cCCeEEcCCCCCC-----CCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchh--HHHHHHHHHHHHH---hcCCC
Q 030477           77 QGGNIVDYHGCDF-----FPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI--ECEIFQVLLEEAK---ESYPE  144 (176)
Q Consensus        77 ~~~~vid~~~~~~-----~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~  144 (176)
                      +.++|+|......     +..  ..++.+|||++|++++.+|+..|+....+..+..  -.+++..++....   ..|..
T Consensus        82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~  161 (188)
T TIGR01360        82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYET  161 (188)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            4678998532110     000  1367899999999999999998875333333221  1234554444433   23443


Q ss_pred             -CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477          145 -DIVLALKSD-TIEDITRNIAILTDW  168 (176)
Q Consensus       145 -~~~i~~~~~-s~~ev~~~i~~~~~~  168 (176)
                       +.++.+|+. +++++.+.+...++.
T Consensus       162 ~~~~~~id~~~~~~~v~~~i~~~l~~  187 (188)
T TIGR01360       162 KGKLRKINAEGTVDDVFLQVCTAIDK  187 (188)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc
Confidence             345556554 899998888877753

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13947 shikimate kinase; Provisional

Probab=99.81  E-value=1.7e-19  Score=126.55  Aligned_cols=152  Identities=21%  Similarity=0.285  Sum_probs=91.6

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC---chhhhcccccc-hHHHHHHHHH----Hh-hcCCe
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG---WDDELECHVIN-EDLVCDELED----IM-EQGGN   80 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~l~~~i~~----~~-~~~~~   80 (176)
                      +.|+|+|+|||||||+|+.||+.+|+++++.|.++........   +.......+.+ +..+++.+..    ++ .++++
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~   81 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV   81 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence            4699999999999999999999999999999988766421110   11111111111 1122222221    00 12334


Q ss_pred             EEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCCCHHHHH
Q 030477           81 IVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTIEDIT  159 (176)
Q Consensus        81 vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~ev~  159 (176)
                      +++......+..  .+.+|||++|++++.+|+..|... +........+.+...+..+.+.|.. +.++++++.+++++.
T Consensus        82 vl~~~~~~~l~~--~~~vv~L~~~~~~l~~Rl~~r~~r-p~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~~i~  158 (171)
T PRK13947         82 VLNPENVVQLRK--NGVVICLKARPEVILRRVGKKKSR-PLLMVGDPEERIKELLKEREPFYDFADYTIDTGDMTIDEVA  158 (171)
T ss_pred             cCCHHHHHHHHh--CCEEEEEECCHHHHHHHhcCCCCC-CCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCCCHHHHH
Confidence            444333333332  356999999999999999876542 2222121123344556666666644 677877777999888


Q ss_pred             HHHHH
Q 030477          160 RNIAI  164 (176)
Q Consensus       160 ~~i~~  164 (176)
                      +.|..
T Consensus       159 ~~I~~  163 (171)
T PRK13947        159 EEIIK  163 (171)
T ss_pred             HHHHH
Confidence            88776

>PRK04182 cytidylate kinase; Provisional

Probab=99.81  E-value=1.2e-18  Score=123.06  Aligned_cols=158  Identities=19%  Similarity=0.214  Sum_probs=92.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCc-----hhhhcccccchHHHHHHHHHHh-hcCCeEEc
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGW-----DDELECHVINEDLVCDELEDIM-EQGGNIVD   83 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~i~~~~-~~~~~vid   83 (176)
                      ++|+|+|++||||||+++.|++++|+++++.+++.+........     .............+...+.... .++++|++
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~   80 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVLE   80 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEEE
Confidence            37999999999999999999999999999988876654211111     1100101100112222333333 45678888


Q ss_pred             CCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccc--hhHH------HHHHHHHHHHHhcCCC-CcEEEecCCC
Q 030477           84 YHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN--NIEC------EIFQVLLEEAKESYPE-DIVLALKSDT  154 (176)
Q Consensus        84 ~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~-~~~i~~~~~s  154 (176)
                      ......+....++++|||++|++++.+|+..|... +....  ....      ..+..++....+.|.. +.+++++..+
T Consensus        81 g~~~~~~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~-~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~  159 (180)
T PRK04182         81 GRLAGWMAKDYADLKIWLKAPLEVRAERIAEREGI-SVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWD  159 (180)
T ss_pred             EeecceEecCCCCEEEEEECCHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCC
Confidence            65444443333678999999999999999887532 11110  0000      0111111111111222 5677777779


Q ss_pred             HHHHHHHHHHHHHH
Q 030477          155 IEDITRNIAILTDW  168 (176)
Q Consensus       155 ~~ev~~~i~~~~~~  168 (176)
                      ++++.+.|...+..
T Consensus       160 ~~~~~~~I~~~~~~  173 (180)
T PRK04182        160 PEGVFDIILTAIDK  173 (180)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888888877754

>PRK00625 shikimate kinase; Provisional

Probab=99.80  E-value=1.7e-19  Score=126.29  Aligned_cols=147  Identities=20%  Similarity=0.262  Sum_probs=85.6

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhh----hccccc-chHHHHHHHHH---H-hhcC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDE----LECHVI-NEDLVCDELED---I-MEQG   78 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~-~~~~l~~~i~~---~-~~~~   78 (176)
                      .|+|+|+|||||||+++.|++++|++++++|++++.....   ....+.    ....+. .+..+++.+..   + ..++
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~VIs~GG   81 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSIVALGG   81 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeEEECCC
Confidence            5999999999999999999999999999999998764221   111111    111111 11112222110   0 0222


Q ss_pred             CeEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEe------
Q 030477           79 GNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLAL------  150 (176)
Q Consensus        79 ~~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~------  150 (176)
                      +.+++......+..  .+.+|||++|++++.+|+..|+.......    .+.+..+++.+.+.|..  +.++++      
T Consensus        82 g~~~~~e~~~~l~~--~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~----~~~~~~ll~~R~~~Y~~~ad~~i~~~~~~~~  155 (173)
T PRK00625         82 GTLMIEPSYAHIRN--RGLLVLLSLPIATIYQRLQKRGLPERLKH----APSLEEILSQRIDRMRSIADYIFSLDHVAET  155 (173)
T ss_pred             CccCCHHHHHHHhc--CCEEEEEECCHHHHHHHHhcCCCCcccCc----HHHHHHHHHHHHHHHHHHCCEEEeCCCcccC
Confidence            33333222223322  35799999999999999998865321111    23466677777777754  444444      


Q ss_pred             cCCCHHHHHHHHH
Q 030477          151 KSDTIEDITRNIA  163 (176)
Q Consensus       151 ~~~s~~ev~~~i~  163 (176)
                      ++.+...+.+.+.
T Consensus       156 ~~~~~~~~~~~~~  168 (173)
T PRK00625        156 SSESLMRACQSFC  168 (173)
T ss_pred             CCCCHHHHHHHHH
Confidence            3445555554443

>PRK14530 adenylate kinase; Provisional

Probab=99.80  E-value=1.2e-17  Score=121.40  Aligned_cols=153  Identities=25%  Similarity=0.458  Sum_probs=99.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc------CCCchhh---hcc-cccchHHHHHHHHHHh-hcC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL------HDGWDDE---LEC-HVINEDLVCDELEDIM-EQG   78 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~------~~~~~~~---~~~-~~~~~~~l~~~i~~~~-~~~   78 (176)
                      +.|+|.|+|||||||+|+.|++++|+++++.+++++....      ...++..   ... .....+.+...+...+ ...
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~~   83 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDAD   83 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Confidence            4799999999999999999999999999999999987641      1222211   111 1122334444555544 346


Q ss_pred             CeEEcCCCCCCCCCC-----------cccEEEEEeCChHHHHHHHhhcCCCCc---------------------------
Q 030477           79 GNIVDYHGCDFFPER-----------WFDRVVVLQTENSVLYDRLTKRGYTGA---------------------------  120 (176)
Q Consensus        79 ~~vid~~~~~~~~~~-----------~~~~vi~l~~~~~~~~~R~~~r~~~~~---------------------------  120 (176)
                      ++|+|.     +++.           .++.+|+|++|++++.+|+.+|.....                           
T Consensus        84 ~~IldG-----~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~  158 (215)
T PRK14530         84 GFVLDG-----YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQ  158 (215)
T ss_pred             CEEEcC-----CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccC
Confidence            899994     4432           378899999999999999998753110                           


Q ss_pred             cccchh--HHHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477          121 KLTNNI--ECEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       121 ~~~~~~--~~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                      +..+..  -..++..+....   ...|.. +.++.+|+. +++++.+.+...++
T Consensus       159 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  212 (215)
T PRK14530        159 RDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID  212 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence            111111  122444444333   235554 467778876 89999999888775

>PLN02459 probable adenylate kinase

Probab=99.79  E-value=8.3e-18  Score=123.75  Aligned_cols=156  Identities=23%  Similarity=0.328  Sum_probs=105.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh------
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM------   75 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~------   75 (176)
                      +++.|+|.|||||||||+|+.|++++|+.+++.+++++.... ...++.....+     +...+.+.+.+...+      
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~  107 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE  107 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence            446688899999999999999999999999999999987532 22333322222     234455555555433      


Q ss_pred             hcCCeEEcCCCCCCCCCC-----------cccEEEEEeCChHHHHHHHhhcCCCC-------------------------
Q 030477           76 EQGGNIVDYHGCDFFPER-----------WFDRVVVLQTENSVLYDRLTKRGYTG-------------------------  119 (176)
Q Consensus        76 ~~~~~vid~~~~~~~~~~-----------~~~~vi~l~~~~~~~~~R~~~r~~~~-------------------------  119 (176)
                      ...++|+|     +||++           ..+.+|+|++|.+++.+|+..|....                         
T Consensus       108 ~~~g~iLD-----GFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~  182 (261)
T PLN02459        108 GESGFILD-----GFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMP  182 (261)
T ss_pred             CCceEEEe-----CCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCC
Confidence            23689999     77774           35789999999999999999874210                         


Q ss_pred             -------------ccccchhH--HHHHHHHHHHHH---hcCCC-CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477          120 -------------AKLTNNIE--CEIFQVLLEEAK---ESYPE-DIVLALKSD-TIEDITRNIAILTDW  168 (176)
Q Consensus       120 -------------~~~~~~~~--~~~~~~~~~~~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~  168 (176)
                                   .+..++.+  ..++..+..+..   ..|.. +.++.+++. ++++|.+.+..+++.
T Consensus       183 p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~  251 (261)
T PLN02459        183 PLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL  251 (261)
T ss_pred             CCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence                         01111111  234444444433   45665 577888876 899999999988753

>PLN02199 shikimate kinase

Probab=99.78  E-value=1.5e-18  Score=129.13  Aligned_cols=159  Identities=14%  Similarity=0.164  Sum_probs=100.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCch----hhhccccc-chHHHHHHHHH----H-hhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWD----DELECHVI-NEDLVCDELED----I-MEQ   77 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~i~~----~-~~~   77 (176)
                      +++.|+|+|++||||||+++.|++.+|++++|+|.++..........    ......+. .+..++..+..    + ..+
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStG  180 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTG  180 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECC
Confidence            56789999999999999999999999999999999988752111111    11111222 12222222221    1 133


Q ss_pred             CCeEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcC-CCCccccc-hhH-----HHHHHHHHHHHHhcCCC-CcEEE
Q 030477           78 GGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRG-YTGAKLTN-NIE-----CEIFQVLLEEAKESYPE-DIVLA  149 (176)
Q Consensus        78 ~~~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~-~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~-~~~i~  149 (176)
                      +|+++.......+.   .+.+|||++|++++.+|+...+ ..+|.... +.+     .+.+..+++++.+.|.. +.+|.
T Consensus       181 GG~V~~~~n~~~L~---~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~  257 (303)
T PLN02199        181 GGAVIRPINWKYMH---KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVS  257 (303)
T ss_pred             CcccCCHHHHHHHh---CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCCEEEe
Confidence            44444433333333   2579999999999999998522 23444321 111     24678889999998887 56666


Q ss_pred             ------------ecCCCHHHHHHHHHHHHHHH
Q 030477          150 ------------LKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       150 ------------~~~~s~~ev~~~i~~~~~~~  169 (176)
                                  +++.+++++...|...+...
T Consensus       258 ~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~  289 (303)
T PLN02199        258 LENIAAKRGYKNVSDLTPTEIAIEAFEQVLSF  289 (303)
T ss_pred             cccccccccccccCCCCHHHHHHHHHHHHHHH
Confidence                        55668888777766665443

>PRK02496 adk adenylate kinase; Provisional

Probab=99.78  E-value=1.3e-17  Score=118.29  Aligned_cols=150  Identities=25%  Similarity=0.437  Sum_probs=96.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHHh----hcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDIM----EQGG   79 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~~----~~~~   79 (176)
                      +.|+|+|+|||||||+++.|++++|+++++.+++++..... ...+.....     .....+.+...+...+    ...+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g   81 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG   81 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence            56899999999999999999999999999999998775321 122211111     1123344444444433    3357


Q ss_pred             eEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH---Hh
Q 030477           80 NIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA---KE  140 (176)
Q Consensus        80 ~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~  140 (176)
                      +|+|     +||+.                .++.+|+|++|++++.+|+..|+....  .+..-..++..+....   ..
T Consensus        82 ~vld-----GfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd--~~~~~~~r~~~y~~~~~~v~~  154 (184)
T PRK02496         82 WILD-----GFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDD--TEEVIRRRLEVYREQTAPLID  154 (184)
T ss_pred             EEEe-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence            9999     44431                367899999999999999998865321  1122222333333322   22


Q ss_pred             cCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477          141 SYPE-DIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       141 ~~~~-~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                      .|.. +.++.+|+. +++++.+.+..++
T Consensus       155 ~~~~~~~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        155 YYRDRQKLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             HHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence            4443 456677765 8999988887665

>TIGR01351 adk adenylate kinases

Probab=99.77  E-value=1.9e-17  Score=119.88  Aligned_cols=150  Identities=22%  Similarity=0.393  Sum_probs=98.2

Q ss_pred             EEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhc----c-cccchHHHHHHHHHHhh-----cCCe
Q 030477           12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELE----C-HVINEDLVCDELEDIME-----QGGN   80 (176)
Q Consensus        12 I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~-~~~~~~~l~~~i~~~~~-----~~~~   80 (176)
                      |+|+|+|||||||+|+.|++++|+++++.+++++..... ...+....    . .....+.+.+.+...+.     ..+|
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            899999999999999999999999999999999875321 12222111    1 12234445555554332     3589


Q ss_pred             EEcCCCCCCCCCC-------------cccEEEEEeCChHHHHHHHhhcCCCC---------------------------c
Q 030477           81 IVDYHGCDFFPER-------------WFDRVVVLQTENSVLYDRLTKRGYTG---------------------------A  120 (176)
Q Consensus        81 vid~~~~~~~~~~-------------~~~~vi~l~~~~~~~~~R~~~r~~~~---------------------------~  120 (176)
                      |+|     ++|+.             .++.+|+|++|++++.+|+..|....                           .
T Consensus        82 ilD-----GfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~  156 (210)
T TIGR01351        82 ILD-----GFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQ  156 (210)
T ss_pred             EEe-----CCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCcccc
Confidence            999     45442             36789999999999999999885210                           0


Q ss_pred             cccchh--HHHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477          121 KLTNNI--ECEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       121 ~~~~~~--~~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                      +..++.  -..++..+....   ...|.. +.++.+++. ++++|.+.|..++
T Consensus       157 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       157 REDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence            111111  112444444333   235554 467778876 8999988887765

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.77  E-value=1.5e-17  Score=120.80  Aligned_cols=152  Identities=19%  Similarity=0.368  Sum_probs=99.1

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHHh----hcCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDIM----EQGGN   80 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~~----~~~~~   80 (176)
                      .|+|+|+|||||||+|+.|++++|+.+++.+++++..... ...+.....     .....+.+.+.+...+    ...++
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~   81 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF   81 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence            5999999999999999999999999999999998864321 222222111     1223444555555433    23589


Q ss_pred             EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCC-------------------------
Q 030477           81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTG-------------------------  119 (176)
Q Consensus        81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~-------------------------  119 (176)
                      |+|.     +|+.                .++.+|+|++|.+++.+|+..|....                         
T Consensus        82 VlDG-----fPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~  156 (215)
T PRK00279         82 LLDG-----FPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEE  156 (215)
T ss_pred             EEec-----CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCc
Confidence            9993     3332                25689999999999999999885311                         


Q ss_pred             --ccccchh--HHHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477          120 --AKLTNNI--ECEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       120 --~~~~~~~--~~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                        .+..+..  -..++..+....   ...|.. +.++.+|+. ++++|.+.+..+++
T Consensus       157 l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  213 (215)
T PRK00279        157 LIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG  213 (215)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence              1111111  112333333332   345655 467788876 89999999888875

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.77  E-value=3e-17  Score=114.97  Aligned_cols=154  Identities=19%  Similarity=0.192  Sum_probs=90.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCch-hhhcccc-c---chHHHHHHHHHHh-hcCCeEEc
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWD-DELECHV-I---NEDLVCDELEDIM-EQGGNIVD   83 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~---~~~~l~~~i~~~~-~~~~~vid   83 (176)
                      ++|+|+|++||||||+|+.|++++|+++++.+++.+......... ..+.... .   -...+...+.... .++++|++
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~   80 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLE   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEE
Confidence            379999999999999999999999999999988776542111110 0000000 0   0122233333333 45678888


Q ss_pred             CCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCC-CccccchhHHHHHHHHHHHH-HhcCCC--------CcEEEecCC
Q 030477           84 YHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYT-GAKLTNNIECEIFQVLLEEA-KESYPE--------DIVLALKSD  153 (176)
Q Consensus        84 ~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~i~~~~~  153 (176)
                      ......+....++++|||++|++++.+|+.+|+.. .+........  .......+ ...|..        +.+++++..
T Consensus        81 g~~~~~~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~--~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~  158 (171)
T TIGR02173        81 SRLAGWIVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIE--REESEKRRYLKFYGIDIDDLSIYDLVINTSNW  158 (171)
T ss_pred             ecccceeecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHH--HHHHHHHHHHHHhCCCccccccccEEEECCCC
Confidence            76544433444678999999999999999988632 1111111100  00011111 112222        567777777


Q ss_pred             CHHHHHHHHHHHH
Q 030477          154 TIEDITRNIAILT  166 (176)
Q Consensus       154 s~~ev~~~i~~~~  166 (176)
                      ++++ .+.|..++
T Consensus       159 ~~~~-~~~i~~~~  170 (171)
T TIGR02173       159 DPNN-VDIILDAL  170 (171)
T ss_pred             CHHH-HHHHHHHh
Confidence            9998 77777654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK13946 shikimate kinase; Provisional

Probab=99.77  E-value=4e-17  Score=115.84  Aligned_cols=158  Identities=18%  Similarity=0.206  Sum_probs=95.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchh---hhc-ccccchHHHHHHHHHHhhcCCeEEc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDD---ELE-CHVINEDLVCDELEDIMEQGGNIVD   83 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~i~~~~~~~~~vid   83 (176)
                      .++.|+|+|++||||||+++.|++++|+++++.|.+...... ....+   .+. .++.  ..-.+.+..+...+.+||.
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~--~~e~~~l~~l~~~~~~Vi~   85 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR-MTIAEIFAAYGEPEFR--DLERRVIARLLKGGPLVLA   85 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHH--HHHHHHHHHHHhcCCeEEE
Confidence            457899999999999999999999999999999987654421 11111   110 0111  1112233333334444553


Q ss_pred             C-CCCCCCCC-----CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCCCHH
Q 030477           84 Y-HGCDFFPE-----RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTIE  156 (176)
Q Consensus        84 ~-~~~~~~~~-----~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~  156 (176)
                      . ......+.     ...+.+|||++|++++.+|+..|... +........+.+..+++.+.+.|.. +.+++++..+++
T Consensus        86 ~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~r-p~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~~~~~~~  164 (184)
T PRK13946         86 TGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTR-PLLRTADPKETLARLMEERYPVYAEADLTVASRDVPKE  164 (184)
T ss_pred             CCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCC-CcCCCCChHHHHHHHHHHHHHHHHhCCEEEECCCCCHH
Confidence            2 21111221     02457899999999999999877532 2222111123456666666666654 566666666888


Q ss_pred             HHHHHHHHHHHHH
Q 030477          157 DITRNIAILTDWV  169 (176)
Q Consensus       157 ev~~~i~~~~~~~  169 (176)
                      ++.+.+...++..
T Consensus       165 ~~~~~i~~~i~~~  177 (184)
T PRK13946        165 VMADEVIEALAAY  177 (184)
T ss_pred             HHHHHHHHHHHHh
Confidence            8877777766543

>PRK14529 adenylate kinase; Provisional

Probab=99.76  E-value=3.5e-17  Score=118.51  Aligned_cols=151  Identities=19%  Similarity=0.312  Sum_probs=102.3

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccc-----cchHHHHHHHHHHhh---cCCeE
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHV-----INEDLVCDELEDIME---QGGNI   81 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~l~~~i~~~~~---~~~~v   81 (176)
                      .|+|.|||||||||+++.|++++++++++.+++++.... ....+.....++     ...+.+.+.+...+.   ..++|
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i   81 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL   81 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence            589999999999999999999999999999999987532 223333332222     233445555554332   46899


Q ss_pred             EcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCC--------------------------
Q 030477           82 VDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTG--------------------------  119 (176)
Q Consensus        82 id~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~--------------------------  119 (176)
                      +|     +||++                .++.+|+|++|.+++.+|+..|....                          
T Consensus        82 LD-----GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~  156 (223)
T PRK14529         82 LD-----GFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGG  156 (223)
T ss_pred             Ee-----CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCC
Confidence            99     67764                36789999999999999999884211                          


Q ss_pred             ---ccccch---hHHHHHHHHHHH------HHhcCC------CCcEEEecCC-CHHHHHHHHHHHH
Q 030477          120 ---AKLTNN---IECEIFQVLLEE------AKESYP------EDIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       120 ---~~~~~~---~~~~~~~~~~~~------~~~~~~------~~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                         .+..+.   .-..++..+..+      ..+.|.      .+.++.+++. ++++|.+.|..++
T Consensus       157 ~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        157 ELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             ccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence               022221   112355555543      123566      3567888876 8899988887765

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.76  E-value=6e-17  Score=118.13  Aligned_cols=104  Identities=29%  Similarity=0.442  Sum_probs=75.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccc-----cchHHHHHHHHHHh------
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHV-----INEDLVCDELEDIM------   75 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~l~~~i~~~~------   75 (176)
                      .++.|+|.|||||||||+|+.|++++|+++++++++++.... ....+.....++     ...+.+.+.+...+      
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence            445699999999999999999999999999999999987532 223333322221     23344444444422      


Q ss_pred             hcCCeEEcCCCCCCCCCC-----------cccEEEEEeCChHHHHHHHhhcC
Q 030477           76 EQGGNIVDYHGCDFFPER-----------WFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        76 ~~~~~vid~~~~~~~~~~-----------~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      ...+|++|     ++|++           .++.+++|++|.+++.+|+..|.
T Consensus        85 ~~~g~iLD-----GfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr  131 (229)
T PTZ00088         85 CFKGFILD-----GFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR  131 (229)
T ss_pred             cCceEEEe-----cCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence            23679999     55542           46789999999999999999874

>PRK14526 adenylate kinase; Provisional

Probab=99.75  E-value=7.7e-17  Score=116.33  Aligned_cols=152  Identities=20%  Similarity=0.354  Sum_probs=99.8

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh----hcCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM----EQGGN   80 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~~~~   80 (176)
                      .|+|+|+|||||||+++.|++.+|+.+++.+++++.... ....+.....+     ....+.+.+.+...+    ...++
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~   81 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF   81 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence            488999999999999999999999999999999987532 22222222111     123344445444433    34689


Q ss_pred             EEcCCCCCCCCCC----------c-ccEEEEEeCChHHHHHHHhhcCCCC---------------------------ccc
Q 030477           81 IVDYHGCDFFPER----------W-FDRVVVLQTENSVLYDRLTKRGYTG---------------------------AKL  122 (176)
Q Consensus        81 vid~~~~~~~~~~----------~-~~~vi~l~~~~~~~~~R~~~r~~~~---------------------------~~~  122 (176)
                      |+|     +||+.          . ...+++|.+|++++.+|+..|....                           .+.
T Consensus        82 ilD-----GfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~  156 (211)
T PRK14526         82 ILD-----GFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRK  156 (211)
T ss_pred             EEE-----CCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccC
Confidence            999     77764          1 1357889999999999999885211                           112


Q ss_pred             cchhH--HHHHHHHHHHH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477          123 TNNIE--CEIFQVLLEEA---KESYPE-DIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       123 ~~~~~--~~~~~~~~~~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                      .++.+  ..++..+....   .+.|.. +.++.+++. ++++|.+.+..+++
T Consensus       157 DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~  208 (211)
T PRK14526        157 DDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIIS  208 (211)
T ss_pred             CCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            22221  23444444443   345665 567788876 89999999888775

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.73  E-value=2.1e-16  Score=110.84  Aligned_cols=153  Identities=18%  Similarity=0.190  Sum_probs=86.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC--chhhhcccccchHHHHHHHHHHhhcCCeEEc----
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG--WDDELECHVINEDLVCDELEDIMEQGGNIVD----   83 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid----   83 (176)
                      ..|+|+|++||||||+++.|++.+|+++++.|.+.........  +........+. +.-.+.++. +....+|+.    
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~-~~e~~~~~~-~~~~~~vi~~ggg   80 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFR-ARESAALEA-VTAPSTVIATGGG   80 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHH-HHHHHHHHH-hcCCCeEEECCCC
Confidence            4689999999999999999999999999999988765421110  11111100010 001111211 222333443    


Q ss_pred             ----CCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCC--CccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCH
Q 030477           84 ----YHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYT--GAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTI  155 (176)
Q Consensus        84 ----~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~  155 (176)
                          ......+.  ..+.+|||++|++++.+|+..|...  ++........+.....++.+.+.|..  .++|+.+ .++
T Consensus        81 ~vl~~~~~~~l~--~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~~-~~~  157 (171)
T PRK03731         81 IILTEENRHFMR--NNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDAT-QPP  157 (171)
T ss_pred             ccCCHHHHHHHH--hCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcCC-CCH
Confidence                22222222  2467999999999999999876421  12121111112344455555556654  3444433 478


Q ss_pred             HHHHHHHHHHHH
Q 030477          156 EDITRNIAILTD  167 (176)
Q Consensus       156 ~ev~~~i~~~~~  167 (176)
                      +++.+.+..++.
T Consensus       158 e~v~~~i~~~l~  169 (171)
T PRK03731        158 SQVVSEILSALA  169 (171)
T ss_pred             HHHHHHHHHHHh
Confidence            888888776664

>PRK04040 adenylate kinase; Provisional

Probab=99.72  E-value=6.8e-16  Score=109.65  Aligned_cols=106  Identities=25%  Similarity=0.384  Sum_probs=68.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc--CCeEeehhHHHhhcccCCCc---hhhhcccccchH-----HHHHHHHHHhhcC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST--QLRHINIGELVREKNLHDGW---DDELECHVINED-----LVCDELEDIMEQG   78 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~l~~~i~~~~~~~   78 (176)
                      +++|+|+|+|||||||+++.|++++  ++.+++.++++.......++   .++....-...+     .....++....++
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~   81 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG   81 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence            5789999999999999999999999  89999999987654322221   122222111111     1222222222334


Q ss_pred             CeEEcCCCC--------CCCC-----CCcccEEEEEeCChHHHHHHHhh
Q 030477           79 GNIVDYHGC--------DFFP-----ERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        79 ~~vid~~~~--------~~~~-----~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                      .+|+|.|..        ..++     ...++.+|++.++|+++.+|...
T Consensus        82 ~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~  130 (188)
T PRK04040         82 PVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLR  130 (188)
T ss_pred             CEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhc
Confidence            588898652        1122     12578899999999999888774

>PRK01184 hypothetical protein; Provisional

Probab=99.72  E-value=6.6e-16  Score=109.57  Aligned_cols=157  Identities=22%  Similarity=0.272  Sum_probs=91.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCCchhhhccc------ccchHHHHHHHHH-Hhh--
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDGWDDELECH------VINEDLVCDELED-IME--   76 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~l~~~i~~-~~~--   76 (176)
                      +++|+|+|+|||||||+++ +++++|+++++++++++....   .......+...      .+....+...+.. +..  
T Consensus         1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~   79 (184)
T PRK01184          1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKG   79 (184)
T ss_pred             CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcC
Confidence            4689999999999999998 678899999999998877531   11111111110      0111222222111 222  


Q ss_pred             cCCeEEcCC-CC-------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH-----HhcCC
Q 030477           77 QGGNIVDYH-GC-------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA-----KESYP  143 (176)
Q Consensus        77 ~~~~vid~~-~~-------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  143 (176)
                      +..+|+|.. ..       ..++  ....+|+++||++++.+|+..|++......    .+.+.......     .+.+.
T Consensus        80 ~~~vvidg~r~~~e~~~~~~~~~--~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~----~~~~~~r~~~q~~~~~~~~~~  153 (184)
T PRK01184         80 DEVVVIDGVRGDAEVEYFRKEFP--EDFILIAIHAPPEVRFERLKKRGRSDDPKS----WEELEERDERELSWGIGEVIA  153 (184)
T ss_pred             CCcEEEeCCCCHHHHHHHHHhCC--cccEEEEEECCHHHHHHHHHHcCCCCChhh----HHHHHHHHHHHhccCHHHHHH
Confidence            346777853 10       0122  134799999999999999998875321111    11222222111     11222


Q ss_pred             C-CcEEEecCCCHHHHHHHHHHHHHHHHhhc
Q 030477          144 E-DIVLALKSDTIEDITRNIAILTDWVRNWQ  173 (176)
Q Consensus       144 ~-~~~i~~~~~s~~ev~~~i~~~~~~~~~~~  173 (176)
                      . +.+|+ |+++.+++.+.+.++++.+...+
T Consensus       154 ~ad~vI~-N~~~~~~l~~~v~~~~~~~~~~~  183 (184)
T PRK01184        154 LADYMIV-NDSTLEEFRARVRKLLERILRSR  183 (184)
T ss_pred             hcCEEEe-CCCCHHHHHHHHHHHHHHHhccC
Confidence            2 45554 66689999999999988776543

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.72  E-value=2.6e-16  Score=112.39  Aligned_cols=103  Identities=30%  Similarity=0.501  Sum_probs=73.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-Cchhhhc-----ccccchHHHHHHHHHHhh----cCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-GWDDELE-----CHVINEDLVCDELEDIME----QGGN   80 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~l~~~i~~~~~----~~~~   80 (176)
                      .|+|+|+|||||||+|+.|++++|+.+++.+++++...... ..+....     ......+.+...+...+.    ..++
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~   80 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF   80 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence            48999999999999999999999999999999988753221 1221111     112233445555555443    4689


Q ss_pred             EEcCCCCCCCCCC---------------cccEEEEEeCChHHHHHHHhhcCCC
Q 030477           81 IVDYHGCDFFPER---------------WFDRVVVLQTENSVLYDRLTKRGYT  118 (176)
Q Consensus        81 vid~~~~~~~~~~---------------~~~~vi~l~~~~~~~~~R~~~r~~~  118 (176)
                      |+|     ++|+.               .++.+|+|++|++++.+|+..|...
T Consensus        81 vld-----g~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~  128 (194)
T cd01428          81 ILD-----GFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC  128 (194)
T ss_pred             EEe-----CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence            998     33331               4678999999999999999988753

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.72  E-value=2.5e-16  Score=120.06  Aligned_cols=162  Identities=16%  Similarity=0.142  Sum_probs=99.6

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC--CchhhhcccccchHHHHHHHHHHhh-cCCeE
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD--GWDDELECHVINEDLVCDELEDIME-QGGNI   81 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~v   81 (176)
                      .+.+...|+|+|++||||||+++.|++++|+++++.|..+.......  .+........+. ..-.+.+..++. .+.+|
T Consensus       129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr-~~e~~~l~~ll~~~~~~V  207 (309)
T PRK08154        129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYR-RLERRALERLIAEHEEMV  207 (309)
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHH-HHHHHHHHHHHhhCCCEE
Confidence            45678899999999999999999999999999999998766542110  000000100110 111122233232 23344


Q ss_pred             EcCCCC--------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecC
Q 030477           82 VDYHGC--------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKS  152 (176)
Q Consensus        82 id~~~~--------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~  152 (176)
                      +.....        ..+..  ...+|||++|++++.+|+.+|+..++........+.+....+.+.+.|.. +.+++++.
T Consensus       208 I~~Ggg~v~~~~~~~~l~~--~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t~~  285 (309)
T PRK08154        208 LATGGGIVSEPATFDLLLS--HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVDTSG  285 (309)
T ss_pred             EECCCchhCCHHHHHHHHh--CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEECCC
Confidence            432110        01111  34699999999999999988764333232222234556666666666665 56677776


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 030477          153 DTIEDITRNIAILTDWV  169 (176)
Q Consensus       153 ~s~~ev~~~i~~~~~~~  169 (176)
                      .+++++.+.|...+...
T Consensus       286 ~s~ee~~~~I~~~l~~~  302 (309)
T PRK08154        286 LTVAQSLARLRELVRPA  302 (309)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            79999999888877544

>PRK06762 hypothetical protein; Provisional

Probab=99.72  E-value=3.6e-16  Score=109.12  Aligned_cols=148  Identities=14%  Similarity=-0.004  Sum_probs=91.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc--CCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcC-CeEEcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST--QLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQG-GNIVDYH   85 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~~vid~~   85 (176)
                      +.+|+|+|+|||||||+|+.|++.+  ++.+++.|.+.......  ... ..  ....+.+.+.++..+..+ .+|+|..
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~--~~~-~~--~~~~~~~~~~~~~~~~~g~~vild~~   76 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRV--KDG-PG--NLSIDLIEQLVRYGLGHCEFVILEGI   76 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccc--cCC-CC--CcCHHHHHHHHHHHHhCCCEEEEchh
Confidence            4689999999999999999999998  56778877665432111  100 00  011233333333334333 4667753


Q ss_pred             CCCC-----CC----C-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCH
Q 030477           86 GCDF-----FP----E-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTI  155 (176)
Q Consensus        86 ~~~~-----~~----~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  155 (176)
                      ....     +.    . ..+..+|||++|++++.+|..+|+.....     ..+.+..+++.....+..+.++.+++.++
T Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  151 (166)
T PRK06762         77 LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEF-----GEDDMRRWWNPHDTLGVIGETIFTDNLSL  151 (166)
T ss_pred             hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccC-----CHHHHHHHHhhcCCcCCCCeEEecCCCCH
Confidence            2110     11    0 11347899999999999999988753221     12345556665554444466777777799


Q ss_pred             HHHHHHHHHHH
Q 030477          156 EDITRNIAILT  166 (176)
Q Consensus       156 ~ev~~~i~~~~  166 (176)
                      +++.+.+...+
T Consensus       152 ~~v~~~i~~~~  162 (166)
T PRK06762        152 KDIFDAILTDI  162 (166)
T ss_pred             HHHHHHHHHHh
Confidence            98888877665

>PRK06217 hypothetical protein; Validated

Probab=99.72  E-value=3.4e-16  Score=110.98  Aligned_cols=102  Identities=23%  Similarity=0.290  Sum_probs=70.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHH-HhhcCCeEEcCCCCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELED-IMEQGGNIVDYHGCD   88 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~vid~~~~~   88 (176)
                      +.|+|+|+|||||||+|+.|++.+|+++++.|++.+.+.... +....     ..+.....+.. +..+.++|+|.....
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~vi~G~~~~   75 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP-FTTKR-----PPEERLRLLLEDLRPREGWVLSGSALG   75 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC-ccccC-----CHHHHHHHHHHHHhcCCCEEEEccHHH
Confidence            569999999999999999999999999999999887653211 11110     11122222222 334568899854322


Q ss_pred             CCC--CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477           89 FFP--ERWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        89 ~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      ...  ...++.+|||++|.+++.+|+..|..
T Consensus        76 ~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~  106 (183)
T PRK06217         76 WGDPLEPLFDLVVFLTIPPELRLERLRLREF  106 (183)
T ss_pred             HHHHHHhhCCEEEEEECCHHHHHHHHHcCcc
Confidence            211  12368899999999999999998864

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.72  E-value=2.6e-17  Score=133.72  Aligned_cols=158  Identities=17%  Similarity=0.229  Sum_probs=104.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCCchhhhcccccc-hHHHHHH-HHH---Hh-hc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDGWDDELECHVIN-EDLVCDE-LED---IM-EQ   77 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~l~~~-i~~---~~-~~   77 (176)
                      .+.+.|+|.|+|||||||+++.||+.+|++|+|+|+.+.+..-   .+-+.+.....+.+ +..+++. ...   ++ .+
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G   83 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLG   83 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence            4568999999999999999999999999999999998876532   11122222223331 2222222 211   11 34


Q ss_pred             CCeEEcCCCCCCC----CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEec
Q 030477           78 GGNIVDYHGCDFF----PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALK  151 (176)
Q Consensus        78 ~~~vid~~~~~~~----~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~  151 (176)
                      +|++++......+    ..  ...+|||++|++++.+|+..+. .+|..... ..+.+.++++.+.+.|..  +..++++
T Consensus        84 GG~v~~~~n~~~L~~~~~~--~g~vv~L~~~~~~l~~Rl~~~~-~RPll~~~-~~~~~~~l~~~R~~~Y~~~Ad~~i~~~  159 (542)
T PRK14021         84 GGAPMTPSTQHALASYIAH--GGRVVYLDADPKEAMERANRGG-GRPMLNGD-ANKRWKKLFKQRDPVFRQVANVHVHTR  159 (542)
T ss_pred             CchhCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHhCCC-CCCCCCCC-cHHHHHHHHHHHHHHHHhhCCEEEECC
Confidence            4545443333322    22  2479999999999999997433 34544322 235678888888888876  6777777


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 030477          152 SDTIEDITRNIAILTDW  168 (176)
Q Consensus       152 ~~s~~ev~~~i~~~~~~  168 (176)
                      +.+++++.+.+.+.+..
T Consensus       160 ~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        160 GLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            77999988888776643

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.71  E-value=1.1e-15  Score=107.83  Aligned_cols=78  Identities=17%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccchh---HHHHHHHHHHHHHhcCCCCcEEEecCC------CHHHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI---ECEIFQVLLEEAKESYPEDIVLALKSD------TIEDITRNIAI  164 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~------s~~ev~~~i~~  164 (176)
                      .|+++|||+|+.+++.+|+.+||++-+....+.   ..+.+...+..+...|..+.++.++..      ++++....+.+
T Consensus       126 ~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~  205 (216)
T COG1428         126 RPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQ  205 (216)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHH
Confidence            489999999999999999999998766333333   345677777777777876555555432      56666666666


Q ss_pred             HHHHHHh
Q 030477          165 LTDWVRN  171 (176)
Q Consensus       165 ~~~~~~~  171 (176)
                      +.+.+..
T Consensus       206 I~~~~~~  212 (216)
T COG1428         206 ILAKLKL  212 (216)
T ss_pred             HHHHHhh
Confidence            6555543

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.71  E-value=9.2e-16  Score=108.56  Aligned_cols=158  Identities=19%  Similarity=0.256  Sum_probs=94.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---C--Cchh-------------hh---ccccc-ch-
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---D--GWDD-------------EL---ECHVI-NE-   64 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~--~~~~-------------~~---~~~~~-~~-   64 (176)
                      ..+.|.|-||+||||||+|+.||++||+.|++.+.+.|-....   .  ++.+             .+   ..+++ .+ 
T Consensus         3 ~~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged   82 (222)
T COG0283           3 AAIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGED   82 (222)
T ss_pred             CceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence            3488999999999999999999999999999998876654210   0  0000             00   01111 00 


Q ss_pred             ------------------------HHHHHHHHHHhhc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCC
Q 030477           65 ------------------------DLVCDELEDIMEQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        65 ------------------------~~l~~~i~~~~~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                                              +.+.+..+.+... +++|+|+....  .||.  .++-|||+++++++.+|--+...
T Consensus        83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV~Pd--A~lKiFLtAS~e~RA~RR~~q~~  160 (222)
T COG0283          83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVVFPD--AELKIFLTASPEERAERRYKQLQ  160 (222)
T ss_pred             hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcceECCC--CCeEEEEeCCHHHHHHHHHHHHH
Confidence                                    1244444445555 67999976543  5665  57899999999999776543332


Q ss_pred             CCccc--cchhHHHHHHHHHHHH-H--hcCCC---CcEEEecCCCHHHHHHHHHHHHH
Q 030477          118 TGAKL--TNNIECEIFQVLLEEA-K--ESYPE---DIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       118 ~~~~~--~~~~~~~~~~~~~~~~-~--~~~~~---~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      .....  .+....+...+=.... +  .++.+   ...+++++.|.+||.+.+..+++
T Consensus       161 ~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~  218 (222)
T COG0283         161 AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR  218 (222)
T ss_pred             hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence            22211  1222222111111111 1  12222   36677777799999999888876

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.70  E-value=1.5e-16  Score=109.61  Aligned_cols=141  Identities=23%  Similarity=0.275  Sum_probs=84.9

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHH----HHHHHhhcCCeEEcCCC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD----ELEDIMEQGGNIVDYHG   86 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~i~~~~~~~~~vid~~~   86 (176)
                      .|+|+|+|||||||+++.|++.+|+++++.|.++...... ...+-...  ..++.+..    .+..+....++|++...
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~-~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~vi~~g~   77 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM-SIPEIFAE--EGEEGFRELEREVLLLLLTKENAVIATGG   77 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC-CHHHHHHH--HCHHHHHHHHHHHHHHHhccCCcEEECCC
Confidence            3899999999999999999999999999999887654321 11110000  01111111    22223334455554321


Q ss_pred             CCCCCC------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHH
Q 030477           87 CDFFPE------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIE  156 (176)
Q Consensus        87 ~~~~~~------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~  156 (176)
                      ...+..      .....+|||++|++++.+|+..|.. ++...... .+.+...++.+.+.|..  +.++++++.+++
T Consensus        78 ~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~-r~~~~~~~-~~~~~~~~~~r~~~Y~~~ad~~i~~~~~~~~  153 (154)
T cd00464          78 GAVLREENRRLLLENGIVVWLDASPEELLERLARDKT-RPLLQDED-PERLRELLEEREPLYREVADLTIDTDELSPE  153 (154)
T ss_pred             CccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCC-CCCCCCCC-HHHHHHHHHHHHHHHHHhCcEEEECCCCCCC
Confidence            111111      1245799999999999999988762 23332221 14566666777776655  677777776654

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK08118 topology modulation protein; Reviewed

Probab=99.70  E-value=1.4e-16  Score=111.26  Aligned_cols=96  Identities=19%  Similarity=0.288  Sum_probs=72.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDF   89 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~   89 (176)
                      +.|+|+|+|||||||+|+.|++.+|+++++.|++.+.+.- ..         ...+.+...++.++...++|+|......
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w-~~---------~~~~~~~~~~~~~~~~~~wVidG~~~~~   71 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNW-EG---------VPKEEQITVQNELVKEDEWIIDGNYGGT   71 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCC-cC---------CCHHHHHHHHHHHhcCCCEEEeCCcchH
Confidence            5799999999999999999999999999999999875431 11         1123344455555666789999754332


Q ss_pred             CCC--CcccEEEEEeCChHHHHHHHhhc
Q 030477           90 FPE--RWFDRVVVLQTENSVLYDRLTKR  115 (176)
Q Consensus        90 ~~~--~~~~~vi~l~~~~~~~~~R~~~r  115 (176)
                      ++.  ..+|.+|||++|.+++..|+.+|
T Consensus        72 ~~~~l~~~d~vi~Ld~p~~~~~~R~~~R   99 (167)
T PRK08118         72 MDIRLNAADTIIFLDIPRTICLYRAFKR   99 (167)
T ss_pred             HHHHHHhCCEEEEEeCCHHHHHHHHHHH
Confidence            221  23789999999999999998877

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.69  E-value=1.3e-16  Score=127.88  Aligned_cols=145  Identities=20%  Similarity=0.316  Sum_probs=95.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC--C-chhhhccccc-ch-HHHHHHHHH---Hh-hcCCeE
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD--G-WDDELECHVI-NE-DLVCDELED---IM-EQGGNI   81 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~-~~-~~l~~~i~~---~~-~~~~~v   81 (176)
                      .|+|+|+|||||||+++.|++++|++++++|+++.+.....  . +......++. .+ ..+.+....   ++ +++++|
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggvv   81 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVV   81 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCccc
Confidence            59999999999999999999999999999999886642111  0 1111111221 11 222222211   11 445677


Q ss_pred             EcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHH
Q 030477           82 VDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRN  161 (176)
Q Consensus        82 id~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~  161 (176)
                      ++....+.+..   ..+|||++|++++.+|+..+++  +.....  .+.+.++++.+.+.|..-..+++++.+++++...
T Consensus        82 ~~~~~r~~l~~---~~vI~L~as~e~l~~Rl~~~~R--PLl~~~--~e~l~~L~~~R~~lY~~~~~IDt~~~s~~e~~~~  154 (488)
T PRK13951         82 IDPENRELLKK---EKTLFLYAPPEVLMERVTTENR--PLLREG--KERIREIWERRKQFYTEFRGIDTSKLNEWETTAL  154 (488)
T ss_pred             cChHHHHHHhc---CeEEEEECCHHHHHHHhccCCC--CCcccc--HHHHHHHHHHHHHHHhcccEEECCCCCHHHHHHH
Confidence            77655555543   3589999999999999986643  433221  2356678888888888756788887788765554


Q ss_pred             H
Q 030477          162 I  162 (176)
Q Consensus       162 i  162 (176)
                      +
T Consensus       155 i  155 (488)
T PRK13951        155 V  155 (488)
T ss_pred             H
Confidence            4

>PRK13973 thymidylate kinase; Provisional

Probab=99.69  E-value=6.2e-15  Score=106.90  Aligned_cols=161  Identities=17%  Similarity=0.177  Sum_probs=93.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeeh--------hHHHhhcccCC---Cchhhhcccccc---hHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINI--------GELVREKNLHD---GWDDELECHVIN---EDLVCDE   70 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~--------~~~~~~~~~~~---~~~~~~~~~~~~---~~~l~~~   70 (176)
                      ++++|+|.|++||||||+++.|++.+   |..++..        ++.++......   .++......++.   .+.+.+.
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~   81 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEV   81 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999   8887755        44454432211   122211112221   1233344


Q ss_pred             HHHHhhcCCeEE-cCCC-----CCCCCC-----------------CcccEEEEEeCChHHHHHHHhhcCCCC--ccccc-
Q 030477           71 LEDIMEQGGNIV-DYHG-----CDFFPE-----------------RWFDRVVVLQTENSVLYDRLTKRGYTG--AKLTN-  124 (176)
Q Consensus        71 i~~~~~~~~~vi-d~~~-----~~~~~~-----------------~~~~~vi~l~~~~~~~~~R~~~r~~~~--~~~~~-  124 (176)
                      +...+..+.+|| |...     .+..+.                 ..|++++||++|++++.+|+.+|+...  ..... 
T Consensus        82 i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~  161 (213)
T PRK13973         82 IRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKE  161 (213)
T ss_pred             HHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhc
Confidence            554555555544 5211     111110                 148999999999999999999886422  22221 


Q ss_pred             h-hHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          125 N-IECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       125 ~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                      + ...+.....+.+....+. ..++.+|+. +++++.+.|..++..+
T Consensus       162 ~~~~~~~~~~~y~~l~~~~~-~~~~~Ida~~~~e~V~~~I~~~i~~~  207 (213)
T PRK13973        162 DLAFHEKRREAFLQIAAQEP-ERCVVIDATASPEAVAAEIWAAVDQR  207 (213)
T ss_pred             hHHHHHHHHHHHHHHHHhCC-CcEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            1 111122222222222233 245556655 8999999999988654

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.67  E-value=2.5e-17  Score=114.17  Aligned_cols=144  Identities=22%  Similarity=0.302  Sum_probs=84.6

Q ss_pred             CCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhhhcccccchHHHHHHHHHHhhcCCeEEcC--------CC
Q 030477           18 PGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDELECHVINEDLVCDELEDIMEQGGNIVDY--------HG   86 (176)
Q Consensus        18 ~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~--------~~   86 (176)
                      |||||||+++.||+.||++|+|.|+.+......   +.+.......+.  ..-.+.+..+....+.||..        ..
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr--~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~   78 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFR--ELESEALRELLKENNCVIACGGGIVLKEEN   78 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHH--HHHHHHHHHHHCSSSEEEEE-TTGGGSHHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHH--HHHHHHHHHHhccCcEEEeCCCCCcCcHHH
Confidence            799999999999999999999999988665321   111111111111  11122233333333444432        11


Q ss_pred             CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHHHHHHHHHH
Q 030477           87 CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIEDITRNIAI  164 (176)
Q Consensus        87 ~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~ev~~~i~~  164 (176)
                      .+.+.  ....+|||+++++++.+|+..+.. +|..............+..+.+.|..  +.+++++..+++++.+.|.+
T Consensus        79 ~~~L~--~~g~vI~L~~~~~~l~~Rl~~~~~-Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~~~~~~~~~i~~~i~~  155 (158)
T PF01202_consen   79 RELLK--ENGLVIYLDADPEELAERLRARDN-RPLLKGKMEHEEILELLFEREPLYEQAADIVVDTDGSPPEEIAEEILE  155 (158)
T ss_dssp             HHHHH--HHSEEEEEE--HHHHHHHHHHHCT-SGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEETSSCHHHHHHHHHHH
T ss_pred             HHHHH--hCCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEeCCCCCHHHHHHHHHH
Confidence            22222  145799999999999999987765 45555444322233333366667766  45666665566888777776


Q ss_pred             HH
Q 030477          165 LT  166 (176)
Q Consensus       165 ~~  166 (176)
                      .+
T Consensus       156 ~l  157 (158)
T PF01202_consen  156 FL  157 (158)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.66  E-value=3.5e-15  Score=109.56  Aligned_cols=159  Identities=16%  Similarity=0.173  Sum_probs=91.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC---------Cchh------------hhcccccchHH--
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD---------GWDD------------ELECHVINEDL--   66 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~---------~~~~------------~~~~~~~~~~~--   66 (176)
                      .+|.|||.+||||||+++.|.+++|++++|+|.+.++.....         .|+.            .....++....  
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            579999999999999999998889999999999877642100         1111            01111121111  


Q ss_pred             ----------HHHHHHHHh--------------hc-CCeEEcCCCC-C-CCCCCcccEEEEEeCChHHHHHHHhhcCCCC
Q 030477           67 ----------VCDELEDIM--------------EQ-GGNIVDYHGC-D-FFPERWFDRVVVLQTENSVLYDRLTKRGYTG  119 (176)
Q Consensus        67 ----------l~~~i~~~~--------------~~-~~~vid~~~~-~-~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~  119 (176)
                                +...+...+              .+ ..+|+|.... + .+....+|.+|++.||.+++.+|+.+|+.  
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g--  159 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNG--  159 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCC--
Confidence                      111111111              11 2456675431 1 11122368999999999999999998852  


Q ss_pred             ccccchhHHHHHHHHHHHHHhcCCCCcEEEecC--CCHHHHHHHHHHHHHHHHhhc
Q 030477          120 AKLTNNIECEIFQVLLEEAKESYPEDIVLALKS--DTIEDITRNIAILTDWVRNWQ  173 (176)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~s~~ev~~~i~~~~~~~~~~~  173 (176)
                       ...+.... +..............+.+ ..|+  ++.+++...+..+++++++..
T Consensus       160 -~s~eea~~-Ri~~Q~~~~ek~~~aD~V-I~N~~~g~~~~L~~~v~~~~~~~~~~~  212 (244)
T PTZ00451        160 -FSKEEALQ-RIGSQMPLEEKRRLADYI-IENDSADDLDELRGSVCDCVAWMSRQS  212 (244)
T ss_pred             -CCHHHHHH-HHHhCCCHHHHHHhCCEE-EECCCCCCHHHHHHHHHHHHHHHHhhC
Confidence             11112211 222221111111112344 4556  689999999999998877543

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.66  E-value=4.8e-15  Score=118.71  Aligned_cols=157  Identities=20%  Similarity=0.255  Sum_probs=99.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCC--chh--h-----------h-------ccccc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDG--WDD--E-----------L-------ECHVI   62 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~--~~~--~-----------~-------~~~~~   62 (176)
                      ++.+|.|.||+||||||+++.|++++|+.+++.+.+.+....   ...  +..  .           .       ..+++
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~  362 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWI  362 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEe
Confidence            678999999999999999999999999999998888766310   000  000  0           0       00000


Q ss_pred             ----------ch----------------HHHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhh
Q 030477           63 ----------NE----------------DLVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        63 ----------~~----------------~~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                                .+                +.+.+..+++...+++|+|+.+..  .+|.  .++-|||++|++++.+|...
T Consensus       363 ~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~P~--AdlKIfL~As~evRa~RR~~  440 (512)
T PRK13477        363 NGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPD--AELKIFLTASVEERARRRAL  440 (512)
T ss_pred             CCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEcCC--CCEEEEEECCHHHHHHHHHh
Confidence                      00                123334444455678999976533  4555  68899999999999998654


Q ss_pred             cCCCCccccchhHHHHHHHHHHHHH---------hcCCC--CcEEEecCCCHHHHHHHHHHHHHH
Q 030477          115 RGYTGAKLTNNIECEIFQVLLEEAK---------ESYPE--DIVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       115 r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~--~~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      +...++....+.  +.+...+.++.         +.|..  ..++++++.+++++.+.|...++.
T Consensus       441 ~l~~Rpll~~~~--e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeVv~~Il~~i~~  503 (512)
T PRK13477        441 DLQAQGFPVIDL--EQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRD  503 (512)
T ss_pred             hhhhCCCccCCH--HHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            422222211111  22333334444         55655  366777777999999888887754

>PLN02842 nucleotide kinase

Probab=99.66  E-value=5.9e-15  Score=117.40  Aligned_cols=151  Identities=19%  Similarity=0.352  Sum_probs=97.2

Q ss_pred             EEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccc-----cchHHHHHHHHHHh-----hcCCeE
Q 030477           13 LVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHV-----INEDLVCDELEDIM-----EQGGNI   81 (176)
Q Consensus        13 ~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~l~~~i~~~~-----~~~~~v   81 (176)
                      +|.|+|||||||+|+.|++++|+.+++.+++++.... ....+.....++     ...+.+...+.+.+     ...++|
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I   80 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL   80 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence            4899999999999999999999999999999876532 222232222221     23344455554433     346799


Q ss_pred             EcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCC-----------------------ccccchh
Q 030477           82 VDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTG-----------------------AKLTNNI  126 (176)
Q Consensus        82 id~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~-----------------------~~~~~~~  126 (176)
                      +|     ++|+.            .++.+|+|++|++++.+|+..|....                       .+..++.
T Consensus        81 LD-----GfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~e  155 (505)
T PLN02842         81 LD-----GYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTE  155 (505)
T ss_pred             Ee-----CCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCH
Confidence            98     44442            37899999999999999998774211                       0111111


Q ss_pred             --HHHHHHHHHHHHH---hcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          127 --ECEIFQVLLEEAK---ESYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       127 --~~~~~~~~~~~~~---~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                        -..++..+.....   ..|. ..++.+++. ++++|.+.+..+++.+
T Consensus       156 E~IkkRL~~Y~~~t~pIl~~Y~-~rl~~IDAsqs~EeVfeeI~~iL~~~  203 (505)
T PLN02842        156 EKVKARLQIYKKNAEAILSTYS-DIMVKIDGNRPKEVVFEEISSLLSQI  203 (505)
T ss_pred             HHHHHHHHHHHHHhhhHHHhcC-cEEEEEECCCCHHHHHHHHHHHHHHH
Confidence              1234444444433   2343 355667765 8999999999888644

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.65  E-value=9.7e-15  Score=104.38  Aligned_cols=152  Identities=16%  Similarity=0.149  Sum_probs=85.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-C--------Cchhh-------------hcccccchHH-
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-D--------GWDDE-------------LECHVINEDL-   66 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~--------~~~~~-------------~~~~~~~~~~-   66 (176)
                      ++|.|+|++||||||+++.|++.+|++++++|++.+..... .        .++..             ....++.... 
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            57999999999999999999998899999999987764211 0        11110             1111121111 


Q ss_pred             -----------HHHHHHHHhh----cCCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHH
Q 030477           67 -----------VCDELEDIME----QGGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE  129 (176)
Q Consensus        67 -----------l~~~i~~~~~----~~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~  129 (176)
                                 +.+.+...+.    ...+++|....  ..+. ..+|.+|+++||.+++.+|+.+|+.   ...+... .
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~-~~~D~ii~V~a~~e~r~~Rl~~R~g---~s~e~~~-~  156 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLT-DLCSEIWVVDCSPEQQLQRLIKRDG---LTEEEAE-A  156 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchH-hCCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-H
Confidence                       1122222121    12345564321  1121 1368899999999999999998852   1111111 1


Q ss_pred             HHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHH
Q 030477          130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      +...... ..+.-....++..|+++.+++.+.+.+++.
T Consensus       157 ri~~Q~~-~~~k~~~aD~vI~N~g~~e~l~~qv~~~l~  193 (195)
T PRK14730        157 RINAQWP-LEEKVKLADVVLDNSGDLEKLYQQVDQLLK  193 (195)
T ss_pred             HHHhCCC-HHHHHhhCCEEEECCCCHHHHHHHHHHHHh
Confidence            2211111 111111123344566689999999988764

>PRK08233 hypothetical protein; Provisional

Probab=99.65  E-value=3.2e-15  Score=105.67  Aligned_cols=158  Identities=16%  Similarity=0.208  Sum_probs=84.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-CeEeehhHHHhhccc--CCCchhhhccc-ccchHHHHHHHHHHhhcC--Ce-
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-LRHINIGELVREKNL--HDGWDDELECH-VINEDLVCDELEDIMEQG--GN-   80 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~~~i~~~~~~~--~~-   80 (176)
                      +..+|+|+|+|||||||+|+.|++.++ ..++..|........  ...+......+ .++.+.+.+.+.......  .+ 
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v   81 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYI   81 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEE
Confidence            458999999999999999999999986 333333332111100  00111100111 122345555665555443  44 


Q ss_pred             EEcCCCCCCCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHH-------hcCCCCcEEEec
Q 030477           81 IVDYHGCDFFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAK-------ESYPEDIVLALK  151 (176)
Q Consensus        81 vid~~~~~~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~  151 (176)
                      ++|+......+.  ..++.+|||++|++++.+|..+|.+..... +... ..+..++....       ..+.....+.++
T Consensus        82 ivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~-~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~vId  159 (182)
T PRK08233         82 IVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTG-NEIH-NDLKHYLNYARPLYLEALHTVKPNADIVLD  159 (182)
T ss_pred             EEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccc-cchh-hHHHHHHHHHHHHHHHHhhcCccCCeEEEc
Confidence            446543222221  247899999999999999988776432111 1111 11222222222       222222334455


Q ss_pred             CC-CHHHHHHHHHHHHH
Q 030477          152 SD-TIEDITRNIAILTD  167 (176)
Q Consensus       152 ~~-s~~ev~~~i~~~~~  167 (176)
                      +. +.+++.+.+..++.
T Consensus       160 ~~~~~e~i~~~i~~~l~  176 (182)
T PRK08233        160 GALSVEEIINQIEEELY  176 (182)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            44 78888888888765

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.65  E-value=4e-15  Score=106.39  Aligned_cols=152  Identities=18%  Similarity=0.218  Sum_probs=85.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---------CCchhh------------hcccccchHH--
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---------DGWDDE------------LECHVINEDL--   66 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~--   66 (176)
                      .+|+|+|++||||||+++.|++ +|++++++|.+.+.....         ..++..            +...++....  
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            5899999999999999999988 999999999987765211         011111            1111121111  


Q ss_pred             ----------HHHHHHHHhhc----CCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477           67 ----------VCDELEDIMEQ----GGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI  130 (176)
Q Consensus        67 ----------l~~~i~~~~~~----~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~  130 (176)
                                +.+.+...+..    .-++++....  ..+. ..+|.+|+++||++++.+|+.+|+.   ...+.. ..+
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~-~~~D~vi~V~a~~e~~~~Rl~~R~~---~s~e~~-~~r  156 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLE-KLVDRVLVVDAPPETQLERLMARDG---LSEEEA-EAI  156 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCch-hhCCeEEEEECCHHHHHHHHHHcCC---CCHHHH-HHH
Confidence                      11222222211    3356664321  1221 2368999999999999999998852   111111 112


Q ss_pred             HHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHH
Q 030477          131 FQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       131 ~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      +..+..........+.+| .|+++.+++.+++..+++.
T Consensus       157 i~~Q~~~~~~~~~ad~vI-~N~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        157 IASQMPREEKLARADDVI-DNNGDLEELRKQVERLLQE  193 (194)
T ss_pred             HHHhCCHHHHHHhCCEEE-ECCCCHHHHHHHHHHHHHh
Confidence            222111111111123444 3445899999988887653

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.64  E-value=6.9e-15  Score=105.31  Aligned_cols=160  Identities=18%  Similarity=0.270  Sum_probs=92.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC--------CCchhh-----------hcccccchH---
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH--------DGWDDE-----------LECHVINED---   65 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~---   65 (176)
                      .+..|.|+|++||||||+++.|++++|++++++|.+.+.....        ..++..           ....++...   
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~   84 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK   84 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence            4578999999999999999999988999999999887665211        111111           111112111   


Q ss_pred             ---------HHHHHHHHHhh--c-CCeEEcCCCC--CCCC-CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477           66 ---------LVCDELEDIME--Q-GGNIVDYHGC--DFFP-ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI  130 (176)
Q Consensus        66 ---------~l~~~i~~~~~--~-~~~vid~~~~--~~~~-~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~  130 (176)
                               .+.+.+...+.  . ..+++|....  ..+. ...+|.++++.||.+++.+|+.+|+.   ...+... .+
T Consensus        85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~---~s~~~a~-~r  160 (204)
T PRK14733         85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDG---KNRQQAV-AF  160 (204)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-HH
Confidence                     12222222221  1 2355665332  1111 12368899999999999999998853   1111111 12


Q ss_pred             HHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHHHhh
Q 030477          131 FQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWVRNW  172 (176)
Q Consensus       131 ~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~~~  172 (176)
                      ...+.......-..+.+|+ |++ +.+++.+.+.++++.+...
T Consensus       161 i~~Q~~~eek~~~aD~VI~-N~g~~~~~l~~~~~~~~~~~~~~  202 (204)
T PRK14733        161 INLQISDKEREKIADFVID-NTELTDQELESKLITTINEITNL  202 (204)
T ss_pred             HHhCCCHHHHHHhCCEEEE-CcCCCHHHHHHHHHHHHHHHHhc
Confidence            2222221111111245554 455 8999999999999887543

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.64  E-value=1.2e-14  Score=102.10  Aligned_cols=102  Identities=27%  Similarity=0.501  Sum_probs=72.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcccc-----cchHHHHHHHHHHh----hcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECHV-----INEDLVCDELEDIM----EQGG   79 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~l~~~i~~~~----~~~~   79 (176)
                      +.|+|.|+|||||||+|+.|+++++++++|.+++.+..... ...+.....++     ...+.+...+...+    +..+
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~   80 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG   80 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence            36899999999999999999999999999999998876432 33333332222     22233333333333    2237


Q ss_pred             eEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcC
Q 030477           80 NIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        80 ~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      +|+|     .+|+.                ..+.++.++++.+.+..|+..|.
T Consensus        81 ~I~d-----g~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~  128 (178)
T COG0563          81 FILD-----GFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR  128 (178)
T ss_pred             EEEe-----CCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence            8888     55552                35789999999999999999775

>PRK13975 thymidylate kinase; Provisional

Probab=99.63  E-value=3.3e-14  Score=101.75  Aligned_cols=157  Identities=20%  Similarity=0.175  Sum_probs=82.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeE--eehh----HHHhhcccCCCchhhhcccccchH--HHHHHHHHHhhcCCe
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRH--INIG----ELVREKNLHDGWDDELECHVINED--LVCDELEDIMEQGGN   80 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~i~~~~~~~~~   80 (176)
                      +++|+|.|++||||||+++.|+++++..+  ...+    ..++............-..++..+  ..+..++..+....+
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~~~v   81 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKKRDV   81 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence            36999999999999999999999998533  2222    222221111111110000111111  112233333333456


Q ss_pred             EEcCCC--------CCCCC----------CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh--
Q 030477           81 IVDYHG--------CDFFP----------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE--  140 (176)
Q Consensus        81 vid~~~--------~~~~~----------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--  140 (176)
                      +.|...        .....          ...++++|||++|++++.+|+..|+.  +........+.....+.+...  
T Consensus        82 i~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~--~~~~~~~~~~~~~~~y~~~~~~~  159 (196)
T PRK13975         82 VCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDK--EIFEKKEFLKKVQEKYLELANNE  159 (196)
T ss_pred             EEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCc--cccchHHHHHHHHHHHHHHHhhc
Confidence            666210        00000          01478999999999999999998863  222221112233333433332  


Q ss_pred             cCC-CC--cEEEecCCCHHHHHHHHHHHHH
Q 030477          141 SYP-ED--IVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       141 ~~~-~~--~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      .|. ..  .++++++.+++++.+.|...+.
T Consensus       160 ~~~~~~~~~~Id~~~~~~eev~~~I~~~i~  189 (196)
T PRK13975        160 KFMPKYGFIVIDTTNKSIEEVFNEILNKIK  189 (196)
T ss_pred             ccCCcCCEEEEECCCCCHHHHHHHHHHHHH
Confidence            122 22  3444444589998888877664

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.63  E-value=4.7e-15  Score=101.98  Aligned_cols=96  Identities=30%  Similarity=0.505  Sum_probs=67.0

Q ss_pred             EECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh----hcCCeEEc
Q 030477           14 VTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM----EQGGNIVD   83 (176)
Q Consensus        14 l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~~~~vid   83 (176)
                      |.|||||||||+|+.|++++|+.+++.+++++..... ...+......     .+..+.+.+.+...+    ...++|+|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            6899999999999999999999999999999876422 1222222111     223445555555432    34789999


Q ss_pred             CCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhh
Q 030477           84 YHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        84 ~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~  114 (176)
                           +||++                .++.+|+|++|.+++.+|+..
T Consensus        81 -----GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   81 -----GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             -----SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             -----eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence                 66664                367899999999999999986

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=1.7e-14  Score=96.13  Aligned_cols=140  Identities=19%  Similarity=0.243  Sum_probs=89.3

Q ss_pred             ECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-----CCCchhhhcccccchHHHHHHHHH----Hhhc-CCeEEcC
Q 030477           15 TGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-----HDGWDDELECHVINEDLVCDELED----IMEQ-GGNIVDY   84 (176)
Q Consensus        15 ~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~----~~~~-~~~vid~   84 (176)
                      +|.+||||||++++||+++|+.|++.|++.-..++     ..++.++-+      -.+++.+.+    .... ...|+-.
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR------~pWL~~l~~~~~~~~~~~~~~vi~C   74 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDR------WPWLEALGDAAASLAQKNKHVVIAC   74 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchh------hHHHHHHHHHHHHhhcCCCceEEec
Confidence            59999999999999999999999999987544332     222222111      234444444    2222 2234422


Q ss_pred             -----CCCCCCCCCccc-EEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHH
Q 030477           85 -----HGCDFFPERWFD-RVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSD-TIED  157 (176)
Q Consensus        85 -----~~~~~~~~~~~~-~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~e  157 (176)
                           ..++.++...++ .+|||+.+.+.+.+|+..|..  ..+.    ...++.++...+++-.++.++.++.. ++++
T Consensus        75 SALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~g--HFM~----~~ll~SQfa~LE~P~~de~vi~idi~~~~e~  148 (161)
T COG3265          75 SALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKG--HFMP----ASLLDSQFATLEEPGADEDVLTIDIDQPPEE  148 (161)
T ss_pred             HHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhccc--CCCC----HHHHHHHHHHhcCCCCCCCEEEeeCCCCHHH
Confidence                 223344444444 489999999999999998874  2332    23566777777766665567777765 6777


Q ss_pred             HHHHHHHHH
Q 030477          158 ITRNIAILT  166 (176)
Q Consensus       158 v~~~i~~~~  166 (176)
                      +.+.+...+
T Consensus       149 vv~~~~~~l  157 (161)
T COG3265         149 VVAQALAWL  157 (161)
T ss_pred             HHHHHHHHH
Confidence            766655544

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.62  E-value=1.9e-14  Score=101.38  Aligned_cols=151  Identities=15%  Similarity=0.060  Sum_probs=83.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeE--eehhHHHhhcccCC-C----c--hh---hhccccc--chHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRH--INIGELVREKNLHD-G----W--DD---ELECHVI--NEDLVCDELED   73 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~--~~~~~~~~~~~~~~-~----~--~~---~~~~~~~--~~~~l~~~i~~   73 (176)
                      ++++|+|+|+|||||||+++.|++.++..+  ++.|++........ .    .  ..   +......  .-..+...++.
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~   80 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA   80 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence            357899999999999999999999886654  46666654332110 0    0  00   0000000  01233444444


Q ss_pred             Hh-hcCCeEEcCCCC--CCCCC------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC
Q 030477           74 IM-EQGGNIVDYHGC--DFFPE------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE  144 (176)
Q Consensus        74 ~~-~~~~~vid~~~~--~~~~~------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (176)
                      .+ .+..+|+|....  ..++.      ...-..|+|.||.+++.+|+.+|+...+.    .    .........+.-..
T Consensus        81 ~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~~----~----~~~~~~~~~~~~~~  152 (175)
T cd00227          81 MARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVPG----Q----ARKQARVVHAGVEY  152 (175)
T ss_pred             HHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccch----H----HHHHHHHhcCCCcc
Confidence            44 445678885322  11111      01235799999999999999988742111    1    11111111111122


Q ss_pred             CcEEEecCCCHHHHHHHHHHHH
Q 030477          145 DIVLALKSDTIEDITRNIAILT  166 (176)
Q Consensus       145 ~~~i~~~~~s~~ev~~~i~~~~  166 (176)
                      +.+++++..++++..+.+...+
T Consensus       153 dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         153 DLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             eEEEECCCCCHHHHHHHHHHhc
Confidence            5677776668887776665543

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.62  E-value=9e-15  Score=104.43  Aligned_cols=157  Identities=22%  Similarity=0.254  Sum_probs=89.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---------CCCchh------------hhcccccchH--
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---------HDGWDD------------ELECHVINED--   65 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~--   65 (176)
                      +.+|.|||.+||||||+++.+++ +|++++++|++.++..-         ...++.            .....++...  
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            57899999999999999999988 99999999999884310         011110            1111122111  


Q ss_pred             ----------HHHHHHHHHh--hcC-CeEEcCCC-CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHH
Q 030477           66 ----------LVCDELEDIM--EQG-GNIVDYHG-CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIF  131 (176)
Q Consensus        66 ----------~l~~~i~~~~--~~~-~~vid~~~-~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~  131 (176)
                                .+...+....  ... -+++|.+. .+.....+++.+|+++||+++..+|+.+|+.   ...+.... +.
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~---~~~e~~~~-~~  156 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDG---LDEEDAEA-RL  156 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCC---CCHHHHHH-HH
Confidence                      0111111111  112 23445332 1111112267899999999999999999972   22112222 22


Q ss_pred             HHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHHh
Q 030477          132 QVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRN  171 (176)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~~  171 (176)
                      ...... .+.+.-..++..|+.+.+.+.+++.++++.+..
T Consensus       157 ~~Q~~~-~ek~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~  195 (201)
T COG0237         157 ASQRDL-EEKLALADVVIDNDGSIENLLEQIEKLLKELLG  195 (201)
T ss_pred             HhcCCH-HHHHhhcCChhhcCCCHHHHHHHHHHHHHHHHh
Confidence            222222 222343334445556788888888888877654

>PRK08356 hypothetical protein; Provisional

Probab=99.62  E-value=5.4e-14  Score=100.67  Aligned_cols=156  Identities=17%  Similarity=0.249  Sum_probs=86.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC--CC--ch-h-hh------cccc---------cchHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH--DG--WD-D-EL------ECHV---------INEDLV   67 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~--~~--~~-~-~~------~~~~---------~~~~~l   67 (176)
                      .++|+|+|||||||||+|+.|+ ++|+++++.++..+...-.  ..  |. . ..      ..++         +..+.+
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~   83 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL   83 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence            4679999999999999999996 5899999998854432100  00  00 0 00      0000         001222


Q ss_pred             HHHHHHHh-hcCCeEEcCCCCCC-----CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc
Q 030477           68 CDELEDIM-EQGGNIVDYHGCDF-----FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES  141 (176)
Q Consensus        68 ~~~i~~~~-~~~~~vid~~~~~~-----~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (176)
                      .+.+.... ....+++|.- ...     +.. ....+||+++|++++.+|+..|+...+.....  .+.+..+.......
T Consensus        84 ~~~~~~~~~~~~~ividG~-r~~~q~~~l~~-~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~--~e~~~~~~~~~~~l  159 (195)
T PRK08356         84 IRLAVDKKRNCKNIAIDGV-RSRGEVEAIKR-MGGKVIYVEAKPEIRFERLRRRGAEKDKGIKS--FEDFLKFDEWEEKL  159 (195)
T ss_pred             HHHHHHHhccCCeEEEcCc-CCHHHHHHHHh-cCCEEEEEECCHHHHHHHHHhcCCcccccccc--HHHHHHHHHHHHHh
Confidence            22222222 1235777732 111     111 12479999999999999999887643321111  11222222221111


Q ss_pred             CC-------CCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477          142 YP-------EDIVLALKSDTIEDITRNIAILTDWVR  170 (176)
Q Consensus       142 ~~-------~~~~i~~~~~s~~ev~~~i~~~~~~~~  170 (176)
                      |.       .+.+| +|+.+.+++.+.+..+++.+.
T Consensus       160 ~~~~~~~~~aD~vI-~N~~~~e~~~~~i~~~~~~~~  194 (195)
T PRK08356        160 YHTTKLKDKADFVI-VNEGTLEELRKKVEEILRELS  194 (195)
T ss_pred             hhhhhHHHhCcEEE-ECCCCHHHHHHHHHHHHHHhc
Confidence            11       13444 555699999999999887653

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.61  E-value=3.5e-14  Score=101.92  Aligned_cols=155  Identities=18%  Similarity=0.182  Sum_probs=85.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-----C----Cchh------------hhcccccchHH--
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-----D----GWDD------------ELECHVINEDL--   66 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-----~----~~~~------------~~~~~~~~~~~--   66 (176)
                      .+|.|+|++||||||+++.|++ +|++++++|++.+.....     .    .++.            .....++....  
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            5799999999999999999987 899999999876554211     0    1111            01112221111  


Q ss_pred             ----------HHHHHHHHh----hcC--CeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHH
Q 030477           67 ----------VCDELEDIM----EQG--GNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC  128 (176)
Q Consensus        67 ----------l~~~i~~~~----~~~--~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~  128 (176)
                                +.+.+...+    ..+  .++++....  ..+. ..+|.+||++||.+++.+|+..|+.   ...+.. .
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~-~~~D~vi~V~a~~e~ri~Rl~~R~g---~s~e~~-~  155 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLD-RKMDLVVVVDVDVEERVRRLVEKRG---LDEDDA-R  155 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCcc-ccCCeEEEEECCHHHHHHHHHHcCC---CCHHHH-H
Confidence                      112222211    111  244443221  1221 1368999999999999999998741   111111 1


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHHh
Q 030477          129 EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRN  171 (176)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~~  171 (176)
                      .++..+.......-..+.+ ..|+++.+++.+.+..+++.+.+
T Consensus       156 ~ri~~Q~~~~~k~~~ad~v-I~N~g~~e~l~~~v~~~~~~~~~  197 (200)
T PRK14734        156 RRIAAQIPDDVRLKAADIV-VDNNGTREQLLAQVDGLIAEILS  197 (200)
T ss_pred             HHHHhcCCHHHHHHhCCEE-EECcCCHHHHHHHHHHHHHHHHh
Confidence            1222222211111112333 34556899999999998877654

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.60  E-value=3.3e-15  Score=101.63  Aligned_cols=127  Identities=23%  Similarity=0.288  Sum_probs=74.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh--hcccccchHHHHHHHHHHh-hcCCeEEcCCCC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE--LECHVINEDLVCDELEDIM-EQGGNIVDYHGC   87 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~i~~~~-~~~~~vid~~~~   87 (176)
                      +|+++|+|||||||+++.|++.+++.+++.|++.............  ....-...+.+...++..+ .+..+|+|....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~   80 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTNL   80 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCcC
Confidence            5899999999999999999999999999999887654331111100  0000001123344454444 345678885432


Q ss_pred             CCCCC----------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477           88 DFFPE----------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA  138 (176)
Q Consensus        88 ~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  138 (176)
                      ..-.+          .....+|+|++|.+++.+|+..|+...+... ....+.+..+.+..
T Consensus        81 ~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~-~~~~~~~~~~~~~~  140 (143)
T PF13671_consen   81 SREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRF-EVPEEVFDRMLARF  140 (143)
T ss_dssp             SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS-----HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccc-cCcHHHHHHHHHhh
Confidence            21100          1133689999999999999999887543322 23333455555443

...

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.60  E-value=3.4e-14  Score=98.84  Aligned_cols=147  Identities=17%  Similarity=0.247  Sum_probs=81.2

Q ss_pred             EEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-----ccCCCchhhhcccccchHHHHHHHHHHhh-cCCeEEcCC
Q 030477           12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-----NLHDGWDDELECHVINEDLVCDELEDIME-QGGNIVDYH   85 (176)
Q Consensus        12 I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~vid~~   85 (176)
                      |+|+|++||||||+++.|++.+|..+++.|++....     .....+........+  ..+.+.+...+. +..+|++..
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~Vi~~t   78 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWL--QNLNDASTAAAAKNKVGIITCS   78 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHH--HHHHHHHHHHHhcCCCEEEEec
Confidence            578999999999999999999999999988864221     111111111000000  122333333333 344566643


Q ss_pred             CC-----CCCCCCccc-EEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc-CCCCcEEEecCC-CHHH
Q 030477           86 GC-----DFFPERWFD-RVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES-YPEDIVLALKSD-TIED  157 (176)
Q Consensus        86 ~~-----~~~~~~~~~-~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-s~~e  157 (176)
                      ..     ..+....++ .++||++|++++.+|+..|...   ...   .+.+...+.....+ +.+..++.+|+. ++++
T Consensus        79 ~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~---~~~---~~~i~~~~~~~~~~~~~e~~~~~id~~~~~~~  152 (163)
T TIGR01313        79 ALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGH---FMK---ADMLESQFAALEEPLADETDVLRVDIDQPLEG  152 (163)
T ss_pred             ccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCC---CCC---HHHHHHHHHHhCCCCCCCCceEEEECCCCHHH
Confidence            21     111111222 4699999999999999988631   111   12344444433332 333344555544 6777


Q ss_pred             HHHHHHHHH
Q 030477          158 ITRNIAILT  166 (176)
Q Consensus       158 v~~~i~~~~  166 (176)
                      +.+.+..++
T Consensus       153 ~~~~~~~~~  161 (163)
T TIGR01313       153 VEEDCIAVV  161 (163)
T ss_pred             HHHHHHHHH
Confidence            777766553

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.60  E-value=1.9e-13  Score=98.07  Aligned_cols=161  Identities=20%  Similarity=0.293  Sum_probs=89.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeeh--------hHHHhhcccC--CCchhhhcccccc---hHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINI--------GELVREKNLH--DGWDDELECHVIN---EDLVCDEL   71 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~~---~~~l~~~i   71 (176)
                      ++++|+|.|+.||||||+++.|++.+   |+.++-.        ++.++.....  ..........++.   .+.+.+.+
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i   81 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI   81 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999987   5444421        2223332221  1122211111221   12234444


Q ss_pred             HHHhhcCCeEE-cCCC-----CC----------------CCC-CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH-
Q 030477           72 EDIMEQGGNIV-DYHG-----CD----------------FFP-ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE-  127 (176)
Q Consensus        72 ~~~~~~~~~vi-d~~~-----~~----------------~~~-~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~-  127 (176)
                      ...+..+.+|| |-..     .+                ..+ ...||+++||++|+++..+|+.+|+....+++.... 
T Consensus        82 ~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~  161 (208)
T COG0125          82 KPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDE  161 (208)
T ss_pred             HHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHH
Confidence            44444455544 4210     00                111 014799999999999999999988754233332221 


Q ss_pred             -HHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          128 -CEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       128 -~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                       .+.....+......+.. .++.+|+. +.++|.+.+..++..+
T Consensus       162 f~~kvr~~Y~~la~~~~~-r~~vIda~~~~e~v~~~i~~~l~~~  204 (208)
T COG0125         162 FLEKVREGYLELAAKFPE-RIIVIDASRPLEEVHEEILKILKER  204 (208)
T ss_pred             HHHHHHHHHHHHHhhCCC-eEEEEECCCCHHHHHHHHHHHHHHh
Confidence             12222223333333332 35566665 7999999998888654

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.60  E-value=7.1e-14  Score=102.03  Aligned_cols=159  Identities=16%  Similarity=0.207  Sum_probs=89.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--------CCCc---hh---h----h-------ccccc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--------HDGW---DD---E----L-------ECHVI   62 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--------~~~~---~~---~----~-------~~~~~   62 (176)
                      ++.+|.|.|++||||||+++.|++++|+++++.+.+.+....        ....   .+   .    +       ..++.
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLN   82 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEEC
Confidence            468999999999999999999999999999999997554210        0110   00   0    0       00000


Q ss_pred             c-------------------------hHHHHHHHHHHhhcCCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhc
Q 030477           63 N-------------------------EDLVCDELEDIMEQGGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKR  115 (176)
Q Consensus        63 ~-------------------------~~~l~~~i~~~~~~~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r  115 (176)
                      .                         .+.+......+...+++|++....  ..++.  .++.|||++|.+++.+|...+
T Consensus        83 ~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~vl~~--a~~~ifl~a~~e~R~~Rr~~~  160 (225)
T PRK00023         83 GEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTVVFPD--AELKIFLTASAEERAERRYKE  160 (225)
T ss_pred             CcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheEEeCC--CCEEEEEECCHHHHHHHHHHH
Confidence            0                         012333333344557889886542  24444  578999999999887765433


Q ss_pred             CCCC--ccccchhHHHHHHHHHHHHH---hcCCC---CcEEEecCCCHHHHHHHHHHHHHH
Q 030477          116 GYTG--AKLTNNIECEIFQVLLEEAK---ESYPE---DIVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       116 ~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      ....  ....+.........-.....   .++..   ..+++++..+.+++.+.|..+++.
T Consensus       161 ~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~  221 (225)
T PRK00023        161 LQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALVEE  221 (225)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence            2111  11111111111111010001   11111   255556556999999999888753

>PLN02422 dephospho-CoA kinase

Probab=99.59  E-value=4e-14  Score=103.09  Aligned_cols=154  Identities=14%  Similarity=0.190  Sum_probs=87.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---------CCCchhh------------hcccccchHH--
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---------HDGWDDE------------LECHVINEDL--   66 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~--   66 (176)
                      ++|.|+|.+||||||+++.|+ ++|++++|+|++.+....         ...++..            ....++....  
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR   80 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            479999999999999999998 589999999998766421         0111111            1111221111  


Q ss_pred             ----------HHHHHHH----H-hhc-CCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHH
Q 030477           67 ----------VCDELED----I-MEQ-GGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC  128 (176)
Q Consensus        67 ----------l~~~i~~----~-~~~-~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~  128 (176)
                                +.+.+..    . ..+ ..+++|....  ..+. ..+|.+++++||++++.+|+.+|+.   ...+... 
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~-~~~D~vI~V~a~~e~ri~RL~~R~g---~s~eea~-  155 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMD-KWTKPVVVVWVDPETQLERLMARDG---LSEEQAR-  155 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchh-hhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-
Confidence                      1111111    1 111 2455665431  1111 1368999999999999999999862   1111111 


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477          129 EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVR  170 (176)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~  170 (176)
                      .++....... +......++..|+++.+++...+.++++.+.
T Consensus       156 ~Ri~~Q~~~e-ek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~  196 (232)
T PLN02422        156 NRINAQMPLD-WKRSKADIVIDNSGSLEDLKQQFQKVLEKIR  196 (232)
T ss_pred             HHHHHcCChh-HHHhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            1221111110 1112123444556689999999998887763

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.59  E-value=1.3e-13  Score=92.61  Aligned_cols=147  Identities=20%  Similarity=0.294  Sum_probs=87.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCC--chhhhcccccchHHHHHHHHH-----HhhcC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDG--WDDELECHVINEDLVCDELED-----IMEQG   78 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~l~~~i~~-----~~~~~   78 (176)
                      +-.|++.|++||||||++++|++++|+.|++.|++....+.   .+.  +.++-+      =.+++.+..     +..+.
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR------~pWL~~i~~~~~~~l~~~q   85 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDR------WPWLKKIAVELRKALASGQ   85 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccc------cHHHHHHHHHHHHHhhcCC
Confidence            34899999999999999999999999999999987543321   111  111100      012222221     22445


Q ss_pred             CeEEcCCC-----CC--------CCCCC---cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcC
Q 030477           79 GNIVDYHG-----CD--------FFPER---WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESY  142 (176)
Q Consensus        79 ~~vid~~~-----~~--------~~~~~---~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (176)
                      ++|+....     ++        +-+..   ..-.+|+|.++.+++.+|+..|..  ..+.    .+.++.+++..+.+-
T Consensus        86 ~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g--HFMp----~~lleSQf~~LE~p~  159 (191)
T KOG3354|consen   86 GVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG--HFMP----ADLLESQFATLEAPD  159 (191)
T ss_pred             eEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc--ccCC----HHHHHHHHHhccCCC
Confidence            66663211     01        11111   122589999999999999998864  2222    234666666655433


Q ss_pred             CC-CcEEEe--cCCCHHHHHHHHHHHHH
Q 030477          143 PE-DIVLAL--KSDTIEDITRNIAILTD  167 (176)
Q Consensus       143 ~~-~~~i~~--~~~s~~ev~~~i~~~~~  167 (176)
                      .+ ..++.+  ++.+++++.+.|.+.+.
T Consensus       160 ~~e~div~isv~~~~~e~iv~tI~k~~~  187 (191)
T KOG3354|consen  160 ADEEDIVTISVKTYSVEEIVDTIVKMVA  187 (191)
T ss_pred             CCccceEEEeeccCCHHHHHHHHHHHHH
Confidence            33 344444  44478777777776654

>TIGR00017 cmk cytidylate kinase

Probab=99.59  E-value=4.7e-14  Score=102.34  Aligned_cols=105  Identities=20%  Similarity=0.267  Sum_probs=70.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc---------cC---------CCchhhh---c----------
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN---------LH---------DGWDDEL---E----------   58 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~---------~~---------~~~~~~~---~----------   58 (176)
                      ++|.|.||+||||||+++.|++++|+++++.+++.+...         ..         ..++..+   +          
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   82 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGE   82 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCc
Confidence            579999999999999999999999999999998765431         00         0000000   0          


Q ss_pred             ---ccccch----------------HHHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcC
Q 030477           59 ---CHVINE----------------DLVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        59 ---~~~~~~----------------~~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                         ..+..+                ..+.+.++++...+++|++.....  .++.  .++.|||++|+++..+|...+.
T Consensus        83 ~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~~~~v~~~--a~~~ifl~a~~~~Ra~Rr~~~~  159 (217)
T TIGR00017        83 DVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDIGTVVFPN--AEVKIFLDASVEERAKRRYKQL  159 (217)
T ss_pred             chHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCcceEEeCC--CCEEEEEECCHHHHHHHHHHHH
Confidence               001110                234445555556678999876533  3443  6789999999999988887664

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.59  E-value=9.6e-15  Score=99.68  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCCC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFF   90 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~~   90 (176)
                      +|+|+|+|||||||+|+.|++++|+++++.+.+.....  ............-...+.+.+..+...+++|+|......+
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~~   78 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV--GKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDIGTV   78 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH--HHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeeeeeE
Confidence            58999999999999999999999999999884322110  0000000000001122333333344556799987654333


Q ss_pred             CCCcccEEEEEeCChHHHHHHHhhc
Q 030477           91 PERWFDRVVVLQTENSVLYDRLTKR  115 (176)
Q Consensus        91 ~~~~~~~vi~l~~~~~~~~~R~~~r  115 (176)
                      .....+.+|||++|++.+.+|+.+|
T Consensus        79 ~~~~~~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          79 VFPDADLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             EcCCCCEEEEEECCHHHHHHHHHHH
Confidence            2223678999999999999999884

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.58  E-value=6.9e-14  Score=99.99  Aligned_cols=153  Identities=18%  Similarity=0.123  Sum_probs=85.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---------CCchhh------------hcccccchH----
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---------DGWDDE------------LECHVINED----   65 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~----   65 (176)
                      +|.|+|++||||||+++.|++ +|+.++++|++.+.....         ..|+..            ....++...    
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            488999999999999999965 799999999987664211         111111            111112111    


Q ss_pred             --------HHHHHHHHHh---hcC-CeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHH
Q 030477           66 --------LVCDELEDIM---EQG-GNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIF  131 (176)
Q Consensus        66 --------~l~~~i~~~~---~~~-~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~  131 (176)
                              .+.+.+...+   ..+ -+++|....  ..+. ..+|.+|++++|++++.+|+.+|+.   ...+... .++
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~-~~~D~vi~V~a~~e~r~~RL~~R~g---~s~e~a~-~ri  154 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAY-TLCDATVTVDSDPEESILRTISRDG---MKKEDVL-ARI  154 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCch-hhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-HHH
Confidence                    1111222211   122 345564321  0111 2368999999999999999998853   1111111 112


Q ss_pred             HHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477          132 QVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVR  170 (176)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~  170 (176)
                      ..... ..+.-....++..|+++.+++...+.++.+.+.
T Consensus       155 ~~Q~~-~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~  192 (196)
T PRK14732        155 ASQLP-ITEKLKRADYIVRNDGNREGLKEECKILYSTLL  192 (196)
T ss_pred             HHcCC-HHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            11111 111111123444566689999999998886553

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.58  E-value=1.3e-13  Score=99.57  Aligned_cols=157  Identities=15%  Similarity=0.153  Sum_probs=87.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-----C----Cchh----------------hhccccc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-----D----GWDD----------------ELECHVI   62 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-----~----~~~~----------------~~~~~~~   62 (176)
                      .+.+|.|+|++||||||+++.|++ +|++++++|.+.+.....     .    .++.                .....++
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf   82 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF   82 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence            456788999999999999999976 999999999776543110     0    0010                1111222


Q ss_pred             chHH------------HHHHHHH----Hhhc-CC-eEEcCCCC-CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCcccc
Q 030477           63 NEDL------------VCDELED----IMEQ-GG-NIVDYHGC-DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLT  123 (176)
Q Consensus        63 ~~~~------------l~~~i~~----~~~~-~~-~vid~~~~-~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~  123 (176)
                      ....            +...++.    .... .. ++++.... +.-....++.+|++.||.+++.+|+.+|+..   ..
T Consensus        83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~---s~  159 (208)
T PRK14731         83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMG---SR  159 (208)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCC---CH
Confidence            1111            1112222    1112 13 44454321 1111123689999999999999999999742   11


Q ss_pred             chhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477          124 NNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVR  170 (176)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~  170 (176)
                      +... .++..+....... ....++..|+++.+++.+.+..+++.+.
T Consensus       160 e~~~-~Ri~~q~~~~~~~-~~ad~vI~N~g~~e~l~~~i~~~~~~~~  204 (208)
T PRK14731        160 EEIR-RRIAAQWPQEKLI-ERADYVIYNNGTLDELKAQTEQLYQVLL  204 (208)
T ss_pred             HHHH-HHHHHcCChHHHH-HhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            1111 1222221111111 1122334555689999999999987664

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.58  E-value=3.3e-15  Score=98.84  Aligned_cols=102  Identities=28%  Similarity=0.364  Sum_probs=59.9

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh-cccccchHHHHHHHHHHh---hcCCeEEcCCC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL-ECHVINEDLVCDELEDIM---EQGGNIVDYHG   86 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~---~~~~~vid~~~   86 (176)
                      +|+|+|+|||||||+|+.|++++|+++++.|++++..... ...... .......+.+.+.+....   ....+|+|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~~   79 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI-ERDDDEREYIDADIDLLDDILEQLQNKPDNDNWIIDGSY   79 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC-HGCTTCCHHHHHHHHHHHHHHHHHHETTT--EEEEECCS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc-ccCcchhhHHHHHHHHHHHHHHhhhccCCCCeEEEeCCC
Confidence            5899999999999999999999999999999954333222 111111 111112233344444432   23458888632


Q ss_pred             CC--CCCCCcccEEEEEeCChHHHHHHHh
Q 030477           87 CD--FFPERWFDRVVVLQTENSVLYDRLT  113 (176)
Q Consensus        87 ~~--~~~~~~~~~vi~l~~~~~~~~~R~~  113 (176)
                      ..  .+.....+.+||+.++.++...|+.
T Consensus        80 ~~~~~~~~~~~~~~i~l~~~~~~~~~~~~  108 (121)
T PF13207_consen   80 ESEMEIRLPEFDHVIYLDAPDEECRERRL  108 (121)
T ss_dssp             CHCCHSCCHHGGCEEEEEEEEHHHHHHHH
T ss_pred             ccchhhhhhcCCEEEEEECCCHHHHHHHH
Confidence            11  1122234578999988874444443

...

>PRK07261 topology modulation protein; Provisional

Probab=99.56  E-value=1.3e-14  Score=101.70  Aligned_cols=96  Identities=20%  Similarity=0.288  Sum_probs=71.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCCCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDF   89 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~~~   89 (176)
                      +.|+|+|+|||||||+++.|++.+|.++++.|.+.+.+.    +..      .+.+.+...+...+..+.+|+|++....
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~wIidg~~~~~   70 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----WQE------RDDDDMIADISNFLLKHDWIIDGNYSWC   70 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----ccc------CCHHHHHHHHHHHHhCCCEEEcCcchhh
Confidence            368999999999999999999999999999888765332    110      1224456666666766779999876542


Q ss_pred             C-CC--CcccEEEEEeCChHHHHHHHhhc
Q 030477           90 F-PE--RWFDRVVVLQTENSVLYDRLTKR  115 (176)
Q Consensus        90 ~-~~--~~~~~vi~l~~~~~~~~~R~~~r  115 (176)
                      . +.  ...|.+|+|++|..++..|+.+|
T Consensus        71 ~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR   99 (171)
T PRK07261         71 LYEERMQEADQIIFLNFSRFNCLYRAFKR   99 (171)
T ss_pred             hHHHHHHHCCEEEEEcCCHHHHHHHHHHH
Confidence            2 11  14688999999999999999777

>TIGR00152 dephospho-CoA kinase

Probab=99.56  E-value=9.2e-14  Score=98.94  Aligned_cols=147  Identities=19%  Similarity=0.259  Sum_probs=80.9

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---------CCchhh------------hcccccch-H---
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---------DGWDDE------------LECHVINE-D---   65 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---------~~~~~~------------~~~~~~~~-~---   65 (176)
                      +|+|+|.+||||||+++.|++..|++++++|++.+.....         ..++..            ....++.. .   
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            4899999999999999999987779999999987663211         111111            11111211 1   


Q ss_pred             ------------HHHHHHHHHhhc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477           66 ------------LVCDELEDIMEQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI  130 (176)
Q Consensus        66 ------------~l~~~i~~~~~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~  130 (176)
                                  .+.+.+...... ..++++.+...  .+. ..++.++++++|.+++.+|+..|+.   ...+... .+
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~-~~~D~vv~V~~~~~~~~~Rl~~R~~---~s~~~~~-~r  155 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLR-SLCDRVIVVDVSPQLQLERLMQRDN---LTEEEVQ-KR  155 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcH-HhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-HH
Confidence                        111222222122 24566654321  121 2367899999999999999998862   1111111 12


Q ss_pred             HHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHH
Q 030477          131 FQVLLEEAKESYPEDIVLALKSDTIEDITRNIA  163 (176)
Q Consensus       131 ~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~  163 (176)
                      +.............+.+| .|+++.+++...+.
T Consensus       156 ~~~q~~~~~~~~~ad~vI-~N~~~~e~l~~~~~  187 (188)
T TIGR00152       156 LASQMDIEERLARADDVI-DNSATLADLVKQLE  187 (188)
T ss_pred             HHhcCCHHHHHHhCCEEE-ECCCCHHHHHHHHh
Confidence            222211111111223444 55568888877664

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.55  E-value=4.2e-13  Score=96.58  Aligned_cols=74  Identities=16%  Similarity=0.183  Sum_probs=44.7

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccc-h-hHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTN-N-IECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                      .++.+|||++|++++.+|+.+|+.. ..... . .........+......+. ..++.+|+. +++++.+.|.+++..+
T Consensus       127 ~pd~~i~l~~~~~~~~~Rl~~R~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~Id~~~~~e~v~~~i~~~i~~~  203 (205)
T PRK00698        127 RPDLTLYLDVPPEVGLARIRARGEL-DRIEQEGLDFFERVREGYLELAEKEP-ERIVVIDASQSLEEVHEDILAVIKAW  203 (205)
T ss_pred             CCCEEEEEeCCHHHHHHHHHhcCCc-chhhhhhHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            3789999999999999999988732 11111 1 111222222333222222 234555554 8899999998888654

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.54  E-value=2.9e-13  Score=96.77  Aligned_cols=153  Identities=22%  Similarity=0.271  Sum_probs=76.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC---CeEee--------hhHHHhhcccCC---Cchhhhcccccc---hHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ---LRHIN--------IGELVREKNLHD---GWDDELECHVIN---EDLVCDE   70 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~---~~~l~~~   70 (176)
                      ++++|+|.|++||||||+++.|++.++   ..++-        .++.++......   .+.......++.   .+.+.+.
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~   81 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK   81 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999884   33321        122222221110   011000011111   1223333


Q ss_pred             HHHHhhcCC-eEEcCCC-----CCC----------------CCCCcccEEEEEeCChHHHHHHHhhcCCCCcc-ccchhH
Q 030477           71 LEDIMEQGG-NIVDYHG-----CDF----------------FPERWFDRVVVLQTENSVLYDRLTKRGYTGAK-LTNNIE  127 (176)
Q Consensus        71 i~~~~~~~~-~vid~~~-----~~~----------------~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~-~~~~~~  127 (176)
                      +...+..+. +|+|...     ...                ++...++++|||++|++++.+|+..|+..... ......
T Consensus        82 i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~~  161 (195)
T TIGR00041        82 IKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLDF  161 (195)
T ss_pred             HHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHHH
Confidence            443343443 4556210     000                11112789999999999999999988642111 111111


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHH
Q 030477          128 CEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNI  162 (176)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i  162 (176)
                      .+.....+.+....  ...++.+++. +++++.+.|
T Consensus       162 ~~~~~~~y~~~~~~--~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       162 FEKVRQRYLELADK--EKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             HHHHHHHHHHHHcC--CCcEEEEeCCCCHHHHHhhC
Confidence            12222222222222  2344555554 788877653

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.54  E-value=7.1e-13  Score=96.52  Aligned_cols=60  Identities=15%  Similarity=0.053  Sum_probs=38.6

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHH-hcCCC-CcEEEecCC
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAK-ESYPE-DIVLALKSD  153 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~~~~~  153 (176)
                      .|+++|||++|++++.+|+.+|++..+........+.+...+.... +.|.. ..++.+|..
T Consensus       142 ~Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~  203 (219)
T cd02030         142 PPHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWT  203 (219)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCC
Confidence            4799999999999999999998864333222222345555555553 33443 466666654

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=99.54  E-value=2.6e-14  Score=95.27  Aligned_cols=108  Identities=30%  Similarity=0.358  Sum_probs=58.1

Q ss_pred             EEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh---hcccccch---HHHHHHHHHHh----hcCCeE
Q 030477           12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE---LECHVINE---DLVCDELEDIM----EQGGNI   81 (176)
Q Consensus        12 I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~l~~~i~~~~----~~~~~v   81 (176)
                      |+|+|+|||||||+|+.|+++++..+.+   ..............   ........   ..+.+.+....    ....+|
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   77 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDIIRD---IAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNII   77 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHHHH---HHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEE
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHHHH---HHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEE
Confidence            7899999999999999999987222211   11111111000000   00011111   22333333321    245678


Q ss_pred             EcCCCCCCCCCCcccEE-EEEeCChHHHHHHHhhcCCCCccc
Q 030477           82 VDYHGCDFFPERWFDRV-VVLQTENSVLYDRLTKRGYTGAKL  122 (176)
Q Consensus        82 id~~~~~~~~~~~~~~v-i~l~~~~~~~~~R~~~r~~~~~~~  122 (176)
                      +|............... |||+||++++.+|+..|++.....
T Consensus        78 id~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~~~~  119 (129)
T PF13238_consen   78 IDGILSNLELERLFDIKFIFLDCSPEELRKRLKKRGRKEEKK  119 (129)
T ss_dssp             EEESSEEECETTEEEESSEEEE--HHHHHHHHHCTTTSCHHH
T ss_pred             EecccchhcccccceeeEEEEECCHHHHHHHHHhCCCCCCCc
Confidence            88654433333222333 999999999999999988754443

...

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.53  E-value=9e-14  Score=97.96  Aligned_cols=149  Identities=23%  Similarity=0.173  Sum_probs=77.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcC-
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQG-   78 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~-   78 (176)
                      +.++.+|+|+|+|||||||+++.|+++++     ..+++.+.+..... ...+.....   .........+...+ ..+ 
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~---~~~~~~~~~l~~~l~~~g~   79 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSR---IEMALKRAKLAKFLADQGM   79 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHH---HHHHHHHHHHHHHHHhCCC
Confidence            56788999999999999999999999885     66777555433211 111111000   00011112222222 223 


Q ss_pred             CeEEcCCCCC--CCCC----CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEe
Q 030477           79 GNIVDYHGCD--FFPE----RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLAL  150 (176)
Q Consensus        79 ~~vid~~~~~--~~~~----~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~  150 (176)
                      .+|+|.....  ....    .....+|||++|++++.+|+..+... .     ...+.+...+..+.+.|..  +.+|++
T Consensus        80 ~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~-~-----~~~~~~~~~~~~~~~~~~~~Ad~vI~~  153 (176)
T PRK05541         80 IVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYT-K-----ALKGEIKNVVGVDIPFDEPKADLVIDN  153 (176)
T ss_pred             EEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHH-H-----HHcCcccccccCCCcccCCCCCEEEeC
Confidence            4566643211  0000    01246899999999999997532110 0     0011233334444444433  566666


Q ss_pred             cC-CCHHHHHHHHHH
Q 030477          151 KS-DTIEDITRNIAI  164 (176)
Q Consensus       151 ~~-~s~~ev~~~i~~  164 (176)
                      ++ .+++++.+.+..
T Consensus       154 ~~~~~~~~~v~~i~~  168 (176)
T PRK05541        154 SCRTSLDEKVDLILN  168 (176)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            54 255554444433

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.53  E-value=5e-13  Score=95.00  Aligned_cols=143  Identities=17%  Similarity=0.203  Sum_probs=78.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHH--------------------
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD--------------------   69 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------   69 (176)
                      .+++|.||+||||||+++.|+..++..++..+..+...... . ..  +.+.+..+...+                    
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~   78 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASA-G-SE--NHIALSEQEFFTRAGQNLFALSWHANGLYYGV   78 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccch-h-HH--hheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence            58999999999999999999998776666655443322110 0 00  001111111111                    


Q ss_pred             --HHHHHhh-cCCeEEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh
Q 030477           70 --ELEDIME-QGGNIVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE  140 (176)
Q Consensus        70 --~i~~~~~-~~~~vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  140 (176)
                        .++..+. +..+|++...      ...+..  ...+|||++|.+++.+|+..|+...   .+.     +...+. +.+
T Consensus        79 ~~~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~--~~~vi~l~~s~e~l~~RL~~R~~~~---~~~-----i~~rl~-r~~  147 (186)
T PRK10078         79 GIEIDLWLHAGFDVLVNGSRAHLPQARARYQS--ALLPVCLQVSPEILRQRLENRGREN---ASE-----INARLA-RAA  147 (186)
T ss_pred             cHHHHHHHhCCCEEEEeChHHHHHHHHHHcCC--CEEEEEEeCCHHHHHHHHHHhCCCC---HHH-----HHHHHH-Hhh
Confidence              1222232 3445665432      111221  3468999999999999998775321   111     222221 223


Q ss_pred             cCCC-CcEEEecCCCHHHHHHHHHHHHH
Q 030477          141 SYPE-DIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       141 ~~~~-~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      .|.. +.++..++.+++++.+.+..++.
T Consensus       148 ~~~~ad~~vi~~~~s~ee~~~~i~~~l~  175 (186)
T PRK10078        148 RYQPQDCHTLNNDGSLRQSVDTLLTLLH  175 (186)
T ss_pred             hhccCCEEEEeCCCCHHHHHHHHHHHHh
Confidence            3443 32333355589999888887764

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.52  E-value=2.5e-12  Score=91.93  Aligned_cols=157  Identities=20%  Similarity=0.163  Sum_probs=79.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc---CCeEeehhH--------HHhhcccCC---Cchhhhccccc--c-hHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST---QLRHINIGE--------LVREKNLHD---GWDDELECHVI--N-EDLVCDELE   72 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~--~-~~~l~~~i~   72 (176)
                      ++|+|.|++||||||+++.|++.+   |..++....        .++......   .........++  + ...+.+.+.
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   80 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK   80 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999988   665554322        222211100   01110010110  0 011222222


Q ss_pred             HHhhcC-CeEEcCCC-------CCCC---------------CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchh-HH
Q 030477           73 DIMEQG-GNIVDYHG-------CDFF---------------PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI-EC  128 (176)
Q Consensus        73 ~~~~~~-~~vid~~~-------~~~~---------------~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~-~~  128 (176)
                      .....+ .+|+|...       ....               ....++.+|||++|++++.+|+.+|+.......... ..
T Consensus        81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~  160 (200)
T cd01672          81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFH  160 (200)
T ss_pred             HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHH
Confidence            223233 45556211       0000               001378999999999999999998875322101111 11


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHH
Q 030477          129 EIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                      +.....+......+.. .++.+++. +++++.+.+...+.
T Consensus       161 ~~~~~~y~~~~~~~~~-~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         161 ERVREGYLELAAQEPE-RIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             HHHHHHHHHHHHhCCC-eEEEEeCCCCHHHHHHHHHHHHh
Confidence            2222223322222222 34555554 78888888877653

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.52  E-value=2.8e-13  Score=96.12  Aligned_cols=152  Identities=19%  Similarity=0.263  Sum_probs=83.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchH----------------------
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINED----------------------   65 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------   65 (176)
                      ++++|+|+|||||||||+++.|.+++.-.++..+...|.+...+.-+.++  ++.+.+                      
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY--~fvs~~~F~~~i~~~~f~e~~~~~g~~Y   80 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTY--FFLTIEEFKKGIADGEFLEWAEVHDNYY   80 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCcee--EeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence            67899999999999999999998887444556566666655443322222  222222                      


Q ss_pred             -HHHHHHHHHhhcC-CeEEcCC--CCCCCCCCccc--EEEEEeC-ChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477           66 -LVCDELEDIMEQG-GNIVDYH--GCDFFPERWFD--RVVVLQT-ENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA  138 (176)
Q Consensus        66 -~l~~~i~~~~~~~-~~vid~~--~~~~~~~~~~~--~vi~l~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  138 (176)
                       .-.+.++..+..+ .+|+|..  ....+....++  .+||+.+ |.+++.+|+.+|+...   .+... .++.....+.
T Consensus        81 Gt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s---~e~i~-~Rl~~~~~e~  156 (186)
T PRK14737         81 GTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDS---EESIE-KRIENGIIEL  156 (186)
T ss_pred             cCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCC---HHHHH-HHHHHHHHHH
Confidence             2333344444443 4555531  11111111222  5788877 4689999999887421   11121 2333332222


Q ss_pred             HhcCCCCcEEEecCCCHHHHHHHHHHHHH
Q 030477          139 KESYPEDIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       139 ~~~~~~~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      ......+.+| +|+ +.++..+.+..++.
T Consensus       157 ~~~~~~D~vI-~N~-dle~a~~ql~~ii~  183 (186)
T PRK14737        157 DEANEFDYKI-IND-DLEDAIADLEAIIC  183 (186)
T ss_pred             hhhccCCEEE-ECc-CHHHHHHHHHHHHh
Confidence            2111123343 443 67877777776653

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.51  E-value=8.6e-13  Score=109.96  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=94.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CCC--chh--hhc-------------ccccc----
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HDG--WDD--ELE-------------CHVIN----   63 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~~--~~~--~~~-------------~~~~~----   63 (176)
                      +.+.|.|.||+||||||+++.|++++|+++++.+.+.+....   ...  +.+  ...             .++++    
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV  520 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence            356899999999999999999999999999999998777521   111  100  000             01110    


Q ss_pred             ------h----------------HHHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCC
Q 030477           64 ------E----------------DLVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTG  119 (176)
Q Consensus        64 ------~----------------~~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~  119 (176)
                            +                ..+.+..+++...+++|+|..+..  .+|.  .++-|||+++++++.+|..+.....
T Consensus       521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdigtvv~p~--a~~kifl~a~~~~Ra~Rr~~~~~~~  598 (661)
T PRK11860        521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDMGTVIFPD--AALKVFLTASAEARAERRYKQLISK  598 (661)
T ss_pred             hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCCccEECCC--CCeEEEEECChhHHHHHHHHHHHhC
Confidence                  0                123334444445578999876644  4555  6789999999999988875421111


Q ss_pred             --ccccchhHHHHHHH-HHHHHH--hcCCC---CcEEEecCCCHHHHHHHHHHHHHH
Q 030477          120 --AKLTNNIECEIFQV-LLEEAK--ESYPE---DIVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       120 --~~~~~~~~~~~~~~-~~~~~~--~~~~~---~~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                        +...+....+..++ ..+..+  .++..   ..+|+++..+.+|+.+.|..+++.
T Consensus       599 ~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~  655 (661)
T PRK11860        599 GISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE  655 (661)
T ss_pred             CCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence              11111221111111 111111  11222   356666667999999888887754

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.51  E-value=3.8e-13  Score=105.66  Aligned_cols=151  Identities=23%  Similarity=0.295  Sum_probs=82.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---------CCCchhh------------hcccccchH---
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---------HDGWDDE------------LECHVINED---   65 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~---   65 (176)
                      ..|.|+|++||||||+++.|++ +|++++|+|.+.+...-         ...++..            +...++...   
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4699999999999999999977 89999999998776311         1112211            111122111   


Q ss_pred             ---------HHHHHHHHHh---hcCCeEE-cCCCC-C-CCCCCcccEEEEEeCChHHHHHHHhhc-CCCCccccchhHHH
Q 030477           66 ---------LVCDELEDIM---EQGGNIV-DYHGC-D-FFPERWFDRVVVLQTENSVLYDRLTKR-GYTGAKLTNNIECE  129 (176)
Q Consensus        66 ---------~l~~~i~~~~---~~~~~vi-d~~~~-~-~~~~~~~~~vi~l~~~~~~~~~R~~~r-~~~~~~~~~~~~~~  129 (176)
                               .+.+.+...+   .++.+++ +.... + .+. ..+|.+||+++|.+++.+|+..| +....    ... .
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~~~-~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~----~a~-~  154 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESGMA-PLFHLVVVVDADVEVRVRRLVEQRGMAEA----DAR-A  154 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCCch-hhCCEEEEEECCHHHHHHHHHhcCCCCHH----HHH-H
Confidence                     1222222222   1233444 32211 0 111 23688999999999999999874 32211    111 1


Q ss_pred             HHHHH-HHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477          130 IFQVL-LEEAKESYPEDIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       130 ~~~~~-~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                      ++... ..+.....+ +.+++ |+.+.+++...+..+++..
T Consensus       155 ri~~Q~~~e~k~~~A-D~vId-N~~s~e~l~~~v~~~l~~~  193 (395)
T PRK03333        155 RIAAQASDEQRRAVA-DVWLD-NSGTPDELVEAVRALWADR  193 (395)
T ss_pred             HHHhcCChHHHHHhC-CEEEE-CCCCHHHHHHHHHHHHHHH
Confidence            11111 111111111 34444 5568888888888776443

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.51  E-value=1e-12  Score=95.07  Aligned_cols=113  Identities=16%  Similarity=0.115  Sum_probs=65.9

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcC---CeEeehhHHHhhcccCCCc---hhhhc-ccccchHHHHHHHHHHhhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGELVREKNLHDGW---DDELE-CHVINEDLVCDELEDIMEQ   77 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~l~~~i~~~~~~   77 (176)
                      ++.++.+|.|+|++||||||+++.|++.++   +.+++.|++..........   ...+. ...++.+.+.+.+..+..+
T Consensus         2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~   81 (209)
T PRK05480          2 MMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAG   81 (209)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence            456888999999999999999999999883   4567777765432110000   00000 0011223344444332211


Q ss_pred             ------------------------C-CeEEcCCCCCCCC--CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477           78 ------------------------G-GNIVDYHGCDFFP--ERWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        78 ------------------------~-~~vid~~~~~~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                                              . -+|+|....-..+  ...+|.+||+++|.+++.+|...|+.
T Consensus        82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~  148 (209)
T PRK05480         82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDV  148 (209)
T ss_pred             CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcc
Confidence                                    1 1344432211111  13478999999999999999888874

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.51  E-value=3.4e-13  Score=101.41  Aligned_cols=142  Identities=17%  Similarity=0.156  Sum_probs=78.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHH--hhcCCeEEcC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDI--MEQGGNIVDY   84 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~~~vid~   84 (176)
                      ..+.+|+|+|++||||||+++.|. ..|+.+++.-.....                  ..+.+.....  ...-.+++|.
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~~~L~------------------~~l~~~~~~~~~~~~~av~iD~   64 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLPPSLL------------------PKLVELLAQSGGIRKVAVVIDV   64 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcCHHHH------------------HHHHHHHHhcCCCCCeEEEEcc
Confidence            345799999999999999999995 578877753221100                  0111111110  0111234443


Q ss_pred             CCCCCCCC----------C-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC-CCcEEEecC
Q 030477           85 HGCDFFPE----------R-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP-EDIVLALKS  152 (176)
Q Consensus        85 ~~~~~~~~----------~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~  152 (176)
                      .....+..          . ....+|||+++++++.+|+..+.+.++........+.+........+.+. .+.+|++++
T Consensus        65 r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDTs~  144 (288)
T PRK05416         65 RSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDTSE  144 (288)
T ss_pred             CchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEECCC
Confidence            32211000          0 11247999999999999997544344544321111112222222223333 267888887


Q ss_pred             CCHHHHHHHHHHHHH
Q 030477          153 DTIEDITRNIAILTD  167 (176)
Q Consensus       153 ~s~~ev~~~i~~~~~  167 (176)
                      .+++++.+.|...+.
T Consensus       145 ls~~el~e~I~~~l~  159 (288)
T PRK05416        145 LSVHQLRERIRERFG  159 (288)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            799999988877663

>PLN02924 thymidylate kinase

Probab=99.50  E-value=1.6e-12  Score=94.48  Aligned_cols=156  Identities=13%  Similarity=0.073  Sum_probs=80.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC---eEeeh---------hHHHhhccc-CCCchhhhcccccchH--HHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL---RHINI---------GELVREKNL-HDGWDDELECHVINED--LVCDEL   71 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~---~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~--~l~~~i   71 (176)
                      +++++|+|.|++||||||+++.|++.++.   .++-.         +..++.... ...........++..+  .....+
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I   93 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLM   93 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999843   32211         011111110 0111111111111111  112334


Q ss_pred             HHHhhcCC-eEEcCCC--------CCCCC----------CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477           72 EDIMEQGG-NIVDYHG--------CDFFP----------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ  132 (176)
Q Consensus        72 ~~~~~~~~-~vid~~~--------~~~~~----------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~  132 (176)
                      ...+..+. ||.|...        ...+.          ...||++|||++|++++.+|...++   .+.+.....+...
T Consensus        94 ~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~---~~~E~~~~~~rv~  170 (220)
T PLN02924         94 ERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG---ERYEKLEFQKKVA  170 (220)
T ss_pred             HHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc---cccccHHHHHHHH
Confidence            44444444 4445211        00110          0148999999999999999964321   2222211112222


Q ss_pred             HHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          133 VLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                      ..+..    +....+..+|+. +++++.+.|..++...
T Consensus       171 ~~Y~~----la~~~~~vIDa~~sieeV~~~I~~~I~~~  204 (220)
T PLN02924        171 KRFQT----LRDSSWKIIDASQSIEEVEKKIREVVLDT  204 (220)
T ss_pred             HHHHH----HhhcCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            22222    222345555665 8999999998888653

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.50  E-value=1.4e-13  Score=96.94  Aligned_cols=104  Identities=25%  Similarity=0.321  Sum_probs=62.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC---------chhh------------hcccccchHH---
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG---------WDDE------------LECHVINEDL---   66 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~---------~~~~------------~~~~~~~~~~---   66 (176)
                      +|.|||..||||||+++.|++ +|++++++|.+.+.......         |+..            +...++....   
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~   80 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLK   80 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHH
Confidence            689999999999999999977 99999999999877632111         1111            1111121111   


Q ss_pred             ---------HHHHHHHHh---hc-CCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcC
Q 030477           67 ---------VCDELEDIM---EQ-GGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        67 ---------l~~~i~~~~---~~-~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                               +.+.+...+   .. ..+++|.+..  ..+. ..+|.+|++.||.+++.+|+.+|+
T Consensus        81 ~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~-~~~D~vi~V~a~~e~ri~Rl~~R~  144 (180)
T PF01121_consen   81 KLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLE-KLCDEVIVVYAPEEIRIKRLMERD  144 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGG-GGSSEEEEEE--HHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHh-hhhceEEEEECCHHHHHHHHHhhC
Confidence                     222222222   11 3456665431  1111 247899999999999999999884

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.50  E-value=7.8e-13  Score=90.74  Aligned_cols=103  Identities=26%  Similarity=0.256  Sum_probs=63.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-----ccCCCchhh-hcccccchHHHHHHHHH-Hh-hcCCeEE
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-----NLHDGWDDE-LECHVINEDLVCDELED-IM-EQGGNIV   82 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~l~~~i~~-~~-~~~~~vi   82 (176)
                      +|+|+|+|||||||+|+.|++.+++.+++.|.+....     ......... ...++   ..+.+.... .. .+.++|+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~vVi   77 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWL---QALTDALLAKLASAGEGVVV   77 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHH---HHHHHHHHHHHHhCCCCEEE
Confidence            5899999999999999999999999999988875431     111111111 11111   111111111 21 3456788


Q ss_pred             cCCCCC-----CCC---CCcccEEEEEeCChHHHHHHHhhcC
Q 030477           83 DYHGCD-----FFP---ERWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        83 d~~~~~-----~~~---~~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      |.....     .+.   ......+|||.+|++++.+|+..|.
T Consensus        78 d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~  119 (150)
T cd02021          78 ACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK  119 (150)
T ss_pred             EeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence            754311     011   1112358999999999999999885

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.50  E-value=4.3e-13  Score=112.62  Aligned_cols=157  Identities=11%  Similarity=0.109  Sum_probs=93.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-----CCchh---------------------------hh
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-----DGWDD---------------------------EL   57 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-----~~~~~---------------------------~~   57 (176)
                      ..|.|.|||||||||+|+.||+++|+.+++.+.+.+.....     .....                           ..
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS   81 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence            47999999999999999999999999999998876653211     00000                           00


Q ss_pred             ccccc---------c-h----------------HHHHHHHHHHh-hcC---------CeEEcCCCCC--CCCCCcccEEE
Q 030477           58 ECHVI---------N-E----------------DLVCDELEDIM-EQG---------GNIVDYHGCD--FFPERWFDRVV   99 (176)
Q Consensus        58 ~~~~~---------~-~----------------~~l~~~i~~~~-~~~---------~~vid~~~~~--~~~~~~~~~vi   99 (176)
                      ...+.         + +                +.+....+... ..+         ++|+|..+..  .+|.  .++-|
T Consensus        82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigtvv~p~--a~~K~  159 (712)
T PRK09518         82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITTVVAPD--AEVRI  159 (712)
T ss_pred             cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccceEEecC--CCeEE
Confidence            00000         0 0                11222233332 222         7899876544  4554  67899


Q ss_pred             EEeCChHHHHHHHhhcCCCCccccchhHHHHH-HHHHHH--HHhc--CCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477          100 VLQTENSVLYDRLTKRGYTGAKLTNNIECEIF-QVLLEE--AKES--YPEDIVLALKSDTIEDITRNIAILTDWVR  170 (176)
Q Consensus       100 ~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~i~~~~~s~~ev~~~i~~~~~~~~  170 (176)
                      ||+++++++.+|...+..+  ...+....+.. ....+.  ..+.  +....+|+++..+.+++.+.+..+++...
T Consensus       160 ~l~A~~~~Ra~Rr~~~~~~--~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~~~  233 (712)
T PRK09518        160 LLTAREEVRQARRSGQDRS--ETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVEDAI  233 (712)
T ss_pred             EEECCHHHHHHHHHHhhhc--CCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999988766532  11112211111 111111  1111  11136777777799999999999886653

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.49  E-value=1.7e-12  Score=90.16  Aligned_cols=146  Identities=19%  Similarity=0.232  Sum_probs=87.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHH---------------------
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDL---------------------   66 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------   66 (176)
                      ++.+++|+||+|+||||+.++|-++. -..++.+...|.+...+.-+.++  ++.+.+.                     
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY--~Fvs~~EF~~~i~~~~fLE~a~~~gnyY   79 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDY--FFVTEEEFEELIERDEFLEWAEYHGNYY   79 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCcee--EeCCHHHHHHHHhcCCcEEEEEEcCCcc
Confidence            78899999999999999999998888 55778888888887766655443  3333322                     


Q ss_pred             --HHHHHHHHh-hcCCeEEcCCC------CCCCCCCcccEEEEEeC-ChHHHHHHHhhcCCCCccccchhHHHHHHHHHH
Q 030477           67 --VCDELEDIM-EQGGNIVDYHG------CDFFPERWFDRVVVLQT-ENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLE  136 (176)
Q Consensus        67 --l~~~i~~~~-~~~~~vid~~~------~~~~~~~~~~~vi~l~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~  136 (176)
                        ....++..+ .+..+++|...      ...+|.   ...||+.+ +.+++.+|+..|+.+.   .+.+ ..++.....
T Consensus        80 GT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~---~v~IFi~pPs~eeL~~RL~~Rgtds---~e~I-~~Rl~~a~~  152 (191)
T COG0194          80 GTSREPVEQALAEGKDVILDIDVQGALQVKKKMPN---AVSIFILPPSLEELERRLKGRGTDS---EEVI-ARRLENAKK  152 (191)
T ss_pred             cCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCC---eEEEEEcCCCHHHHHHHHHccCCCC---HHHH-HHHHHHHHH
Confidence              233333333 34566665321      223332   24566654 5799999999887422   2112 224444444


Q ss_pred             HHHhcCCC-CcEEEecCCCHHHHHHHHHHHH
Q 030477          137 EAKESYPE-DIVLALKSDTIEDITRNIAILT  166 (176)
Q Consensus       137 ~~~~~~~~-~~~i~~~~~s~~ev~~~i~~~~  166 (176)
                      +.. .+.. +.+ .+| ...+.....+..++
T Consensus       153 Ei~-~~~~fdyv-ivN-dd~e~a~~~l~~ii  180 (191)
T COG0194         153 EIS-HADEFDYV-IVN-DDLEKALEELKSII  180 (191)
T ss_pred             HHH-HHHhCCEE-EEC-ccHHHHHHHHHHHH
Confidence            332 2222 333 343 45776667776665

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.49  E-value=3e-13  Score=95.58  Aligned_cols=36  Identities=31%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK   47 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~   47 (176)
                      +|.|+|++||||||+++.|++ +|++++++|++.+..
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~   36 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEV   36 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhh
Confidence            489999999999999999988 999999999987765

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.47  E-value=4.1e-12  Score=86.57  Aligned_cols=106  Identities=25%  Similarity=0.326  Sum_probs=70.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCch---hhhcccccchHHHHHHHH--HHhhcCC-eE
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWD---DELECHVINEDLVCDELE--DIMEQGG-NI   81 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~i~--~~~~~~~-~v   81 (176)
                      +++++++|.||+||||+++.+.+.+ +..+++.++++-+.......-   ++....-.+.+..++...  .+..... ++
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~ii   83 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEII   83 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceE
Confidence            6899999999999999999999998 888899999876654322222   223322233344343322  2333334 88


Q ss_pred             EcCCC--------CCCCCC-----CcccEEEEEeCChHHHHHHHhh
Q 030477           82 VDYHG--------CDFFPE-----RWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        82 id~~~--------~~~~~~-----~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                      +|.|.        ..++|.     -.++.++.|.++|+++..|-.+
T Consensus        84 vDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~  129 (189)
T COG2019          84 VDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLR  129 (189)
T ss_pred             EeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhc
Confidence            88754        233332     2578999999999999777553

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.47  E-value=2.3e-12  Score=90.72  Aligned_cols=152  Identities=16%  Similarity=0.184  Sum_probs=83.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-----cCCCchhhhcccccchHHHHHHHHHHh--hcCCe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-----LHDGWDDELECHVINEDLVCDELEDIM--EQGGN   80 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~   80 (176)
                      .+.+++|+|++||||||+++.|+..++..+++.+++.....     ..-.+.+. ....+ ...+.+.+....  ...++
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~g~   79 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDE-DRLPW-LERLNDASYSLYKKNETGF   79 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcc-cchHH-HHHHHHHHHHHHhcCCCEE
Confidence            45689999999999999999999999998888776532211     00011110 00001 011111111111  23455


Q ss_pred             EEcCCC----CCCCCCC-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC-CCcEEEecCC-
Q 030477           81 IVDYHG----CDFFPER-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP-EDIVLALKSD-  153 (176)
Q Consensus        81 vid~~~----~~~~~~~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-  153 (176)
                      |+....    .+.+... .+-.+|||++|++++.+|+.+|...  .    ...+.+..++...++... +..++.++.. 
T Consensus        80 iv~s~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~--~----~~~~vl~~Q~~~~e~~~~~e~~~~~~d~~~  153 (176)
T PRK09825         80 IVCSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGH--F----MPPDLLQSQFDALERPCADEHDIARIDVNH  153 (176)
T ss_pred             EEEEecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCC--C----CCHHHHHHHHHHcCCCCCCcCCeEEEECCC
Confidence            553211    1111111 1236899999999999999988631  1    234456665554443322 2356777765 


Q ss_pred             CHHHHHHHHHHHHH
Q 030477          154 TIEDITRNIAILTD  167 (176)
Q Consensus       154 s~~ev~~~i~~~~~  167 (176)
                      +++++...+...++
T Consensus       154 ~~~~~~~~~~~~~~  167 (176)
T PRK09825        154 DIENVTEQCRQAVQ  167 (176)
T ss_pred             CHHHHHHHHHHHHH
Confidence            56555555544443

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.47  E-value=3.8e-13  Score=109.82  Aligned_cols=155  Identities=15%  Similarity=0.058  Sum_probs=87.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCC------eEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cC
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQL------RHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QG   78 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~   78 (176)
                      ..++.+|+|+|+|||||||+|+.|++.++.      .+++.|.+.........+........+  ..+......++. ++
T Consensus       389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~--~~l~~~a~~v~~~Gg  466 (568)
T PRK05537        389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNI--LRIGFVASEITKNGG  466 (568)
T ss_pred             cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHH--HHHHHHHHHHHhCCC
Confidence            346779999999999999999999999985      788866653322211111111000000  111112222333 45


Q ss_pred             CeEEcCCC---------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC---CCc
Q 030477           79 GNIVDYHG---------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP---EDI  146 (176)
Q Consensus        79 ~~vid~~~---------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  146 (176)
                      ++|++...         ...+.....-.+|||++|.+++.+|+.+.     .... ...+.+..++..+.+.|.   .+.
T Consensus       467 ~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~-----Ll~~-~~~~~i~~l~~~R~~yy~p~~Adl  540 (568)
T PRK05537        467 IAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKG-----LYAK-AREGKIKGFTGISDPYEPPANPEL  540 (568)
T ss_pred             EEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcccc-----cccc-chhchhhccccccccccCCCCCcE
Confidence            56667421         12222211115899999999999996422     1111 111234445555566664   257


Q ss_pred             EEEecCCCHHHHHHHHHHHHHH
Q 030477          147 VLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       147 ~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      +++++..+++++.+.|...++.
T Consensus       541 ~IDt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        541 VIDTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             EEECCCCCHHHHHHHHHHHHHH
Confidence            7777766898888777766543

>PRK13974 thymidylate kinase; Provisional

Probab=99.47  E-value=5.7e-12  Score=91.34  Aligned_cols=71  Identities=17%  Similarity=0.043  Sum_probs=45.7

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSD-TIEDITRNIAILTDW  168 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~  168 (176)
                      .++++|||++|++++.+|+..|..  ......  ...+..........|.+ +.++.+++. +++++.+.+..++..
T Consensus       134 ~pd~~i~ld~~~~~~~~R~~~R~d--D~~e~~--~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~  206 (212)
T PRK13974        134 SPDLTFFLEISVEESIRRRKNRKP--DRIEAE--GIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLN  206 (212)
T ss_pred             CCCEEEEEeCCHHHHHHHHHhccc--Cchhhh--hHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999987642  122111  11222222223333333 466677766 899999999988864

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.47  E-value=1.1e-13  Score=95.09  Aligned_cols=105  Identities=23%  Similarity=0.184  Sum_probs=59.3

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhhcccCCCchhhhcccccchH-HHHHHHHHHhhcC
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVREKNLHDGWDDELECHVINED-LVCDELEDIMEQG   78 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~~~   78 (176)
                      .+.++..||++|+|||||||+|.+|.++|   |+.  ++|-|.+-......-.|..+-+    .++ .-...+.+++...
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR----~eniRRvaevAkll~da   94 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDR----IENIRRVAEVAKLLADA   94 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHH----HHHHHHHHHHHHHHHHC
Confidence            34567899999999999999999999987   543  4564444332222222322110    001 1122334455555


Q ss_pred             CeEEcCCC-----------CCCCCCCcccEEEEEeCChHHHHHHHhh
Q 030477           79 GNIVDYHG-----------CDFFPERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        79 ~~vid~~~-----------~~~~~~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                      |+|+=...           .+.+... .-+-||++||.+++.+|--+
T Consensus        95 G~iviva~ISP~r~~R~~aR~~~~~~-~FiEVyV~~pl~vce~RDpK  140 (197)
T COG0529          95 GLIVIVAFISPYREDRQMARELLGEG-EFIEVYVDTPLEVCERRDPK  140 (197)
T ss_pred             CeEEEEEeeCccHHHHHHHHHHhCcC-ceEEEEeCCCHHHHHhcCch
Confidence            54331111           1222222 12469999999999998543

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.45  E-value=5e-12  Score=106.95  Aligned_cols=163  Identities=15%  Similarity=0.176  Sum_probs=99.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc---CC----------Cchh--------------h----
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL---HD----------GWDD--------------E----   56 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~---~~----------~~~~--------------~----   56 (176)
                      +..+|.|.|||||||||+|+.||++||+.+++.+.++|....   ..          +...              .    
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTS  112 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCceE
Confidence            447999999999999999999999999999999988665421   00          0000              0    


Q ss_pred             h------------------------------cccccch--------------------------HHHHHHHHHHhhcCCe
Q 030477           57 L------------------------------ECHVINE--------------------------DLVCDELEDIMEQGGN   80 (176)
Q Consensus        57 ~------------------------------~~~~~~~--------------------------~~l~~~i~~~~~~~~~   80 (176)
                      +                              ...+++.                          +.+....+.+...+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~~~~~  192 (863)
T PRK12269        113 YAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCGARV  192 (863)
T ss_pred             ecccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCE
Confidence            0                              0011110                          1244444445556789


Q ss_pred             EEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH-H--hcCCC---CcEEEecC
Q 030477           81 IVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA-K--ESYPE---DIVLALKS  152 (176)
Q Consensus        81 vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~---~~~i~~~~  152 (176)
                      |+|..+..  .||.  .++-|||+++++++.+|-...... ....+....+..++=.... +  .++..   ..+++++.
T Consensus       193 V~eGRDigTvVfPd--A~~KifL~As~e~RA~RR~~e~~~-~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~  269 (863)
T PRK12269        193 VCEGRDLTTVVFVD--ADLKCYLDASIEARVARRWAQGTS-RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSC  269 (863)
T ss_pred             EEECCCCccEECCC--CCEEEEEECCHHHHHHHHHHhhhc-cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCC
Confidence            99876543  5666  678999999999998876433321 1111122222111111111 1  11111   36666777


Q ss_pred             CCHHHHHHHHHHHHHHHHhhc
Q 030477          153 DTIEDITRNIAILTDWVRNWQ  173 (176)
Q Consensus       153 ~s~~ev~~~i~~~~~~~~~~~  173 (176)
                      .+.+++.+.+..++++-..|-
T Consensus       270 l~ieevv~~i~~~~~~~~~~~  290 (863)
T PRK12269        270 LTIEEVCERIAREAHRRALWG  290 (863)
T ss_pred             CCHHHHHHHHHHHHHhccccc
Confidence            799999999999888776664

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.43  E-value=2.9e-12  Score=89.17  Aligned_cols=142  Identities=18%  Similarity=0.221  Sum_probs=77.0

Q ss_pred             ECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-----CCCchhhhcccccchHHHHHHHHH----Hh-hcCC-eEEc
Q 030477           15 TGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-----HDGWDDELECHVINEDLVCDELED----IM-EQGG-NIVD   83 (176)
Q Consensus        15 ~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~----~~-~~~~-~vid   83 (176)
                      +|+|||||||+++.|++.+|..+++.|.+......     ...+.+.      ........+..    .. .++. +++ 
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~viv-   73 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD------DRKPWLQALNDAAFAMQRTNKVSLIV-   73 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh------hHHHHHHHHHHHHHHHHHcCCceEEE-
Confidence            59999999999999999999999997654221111     1111110      00111111111    11 2232 333 


Q ss_pred             CCC-----CCCCCCC-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCC-CH
Q 030477           84 YHG-----CDFFPER-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSD-TI  155 (176)
Q Consensus        84 ~~~-----~~~~~~~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-s~  155 (176)
                      ...     .+.+... .+-.+|||+||++++.+|+..|...   ..   ..+.+..++...+++-.. ..++.++.. ++
T Consensus        74 ~s~~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~---~a---~~~vl~~Q~~~~ep~~~~e~~~~~id~~~~~  147 (163)
T PRK11545         74 CSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH---FF---KTQMLVTQFETLQEPGADETDVLVVDIDQPL  147 (163)
T ss_pred             EecchHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCC---CC---CHHHHHHHHHHcCCCCCCCCCEEEEeCCCCH
Confidence            221     1111111 1235899999999999999988642   21   334455555444433222 235666655 56


Q ss_pred             HHHHHHHHHHHHHH
Q 030477          156 EDITRNIAILTDWV  169 (176)
Q Consensus       156 ~ev~~~i~~~~~~~  169 (176)
                      +++.+.+...+..+
T Consensus       148 ~~~~~~~~~~~~~~  161 (163)
T PRK11545        148 EGVVASTIEVIKKG  161 (163)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77776666666543

>PRK07933 thymidylate kinase; Validated

Probab=99.43  E-value=1.4e-11  Score=89.23  Aligned_cols=73  Identities=12%  Similarity=0.021  Sum_probs=44.3

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCC-----ccccchh-HHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTG-----AKLTNNI-ECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                      .||++|||++|+++..+|+.+|+...     ...+... ..+...+.+......+....++.+|+. +++++.+.|...+
T Consensus       132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        132 VPDLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             CCCEEEEecCCHHHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            48999999999999999999886421     1222211 112333333333333222355556655 8999988887654

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.43  E-value=4.3e-12  Score=91.06  Aligned_cols=150  Identities=15%  Similarity=0.125  Sum_probs=77.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeE
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNI   81 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v   81 (176)
                      .++.+|+|+|++||||||+++.|+..+     +..+++.|++.........+......  ..-..+......+...+.+|
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~--~~~~~l~~~a~~~~~~G~~V   99 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRK--ENIRRVGEVAKLMVDAGLVV   99 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHH--HHHHHHHHHHHHHhhCCCEE
Confidence            467899999999999999999999876     35677766654332211111100000  00011222222233334444


Q ss_pred             E-cCCC---------CCCCCCCcccE-EEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC--C--Cc
Q 030477           82 V-DYHG---------CDFFPERWFDR-VVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP--E--DI  146 (176)
Q Consensus        82 i-d~~~---------~~~~~~~~~~~-vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~  146 (176)
                      + ++..         ...+..  .+. +|||++|++++.+|.. |    +...... .+.+..+...+.+ |.  .  +.
T Consensus       100 I~~~~~~~~~~R~~~r~~l~~--~~~i~V~L~~~~e~~~~R~~-r----~l~~~~~-~~~~~~l~~~r~~-Y~~p~~ad~  170 (198)
T PRK03846        100 LTAFISPHRAERQMVRERLGE--GEFIEVFVDTPLAICEARDP-K----GLYKKAR-AGEIRNFTGIDSV-YEAPESPEI  170 (198)
T ss_pred             EEEeCCCCHHHHHHHHHHccc--CCEEEEEEcCCHHHHHhcCc-h----hHHHHhh-cCCccCccccccc-CCCCCCCCE
Confidence            4 3221         111221  233 7999999999999921 1    1110000 0011112223333 66  2  45


Q ss_pred             EEEecCCCHHHHHHHHHHHHH
Q 030477          147 VLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       147 ~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      +|+++..+++++.+.|...+.
T Consensus       171 ~Idt~~~~~~~vv~~Il~~l~  191 (198)
T PRK03846        171 HLDTGEQLVTNLVEQLLDYLR  191 (198)
T ss_pred             EEECCCCCHHHHHHHHHHHHH
Confidence            666666688887776666554

>PRK13976 thymidylate kinase; Provisional

Probab=99.42  E-value=4e-11  Score=86.56  Aligned_cols=156  Identities=22%  Similarity=0.212  Sum_probs=81.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC-----eEee--------hhHHHhhcccC-CCchhhhccccc---chHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL-----RHIN--------IGELVREKNLH-DGWDDELECHVI---NEDLVCDELE   72 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~-----~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~---~~~~l~~~i~   72 (176)
                      ++|+|.|+.||||||+++.|++.|..     .++-        .++.++..... ..........++   ..+.+.+.+.
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~   80 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL   80 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999998732     2221        12222222111 011111111111   1122333344


Q ss_pred             HHhhcCCeEE-cCCC-----CCC----------------CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477           73 DIMEQGGNIV-DYHG-----CDF----------------FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI  130 (176)
Q Consensus        73 ~~~~~~~~vi-d~~~-----~~~----------------~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~  130 (176)
                      ..+..+.+|| |...     .+.                .....||++|||++|++++.+|+..++..   ..+....+.
T Consensus        81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e---~~~~~~l~~  157 (209)
T PRK13976         81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYE---FMDLEFYDK  157 (209)
T ss_pred             HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchh---cccHHHHHH
Confidence            4444555544 5210     000                11124899999999999999998654322   111122233


Q ss_pred             HHHHHHHHHhcCCCCcEEEecC----CC---HHHHHHHHHHHHHHH
Q 030477          131 FQVLLEEAKESYPEDIVLALKS----DT---IEDITRNIAILTDWV  169 (176)
Q Consensus       131 ~~~~~~~~~~~~~~~~~i~~~~----~s---~~ev~~~i~~~~~~~  169 (176)
                      ....+......+.. .++.+++    .+   ++++.+.|..++...
T Consensus       158 v~~~Y~~l~~~~~~-~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~  202 (209)
T PRK13976        158 VRKGFREIVIKNPH-RCHVITCIDAKDNIEDINSVHLEIVKLLHAV  202 (209)
T ss_pred             HHHHHHHHHHhCCC-CeEEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence            44444444433333 2233332    24   999999999888654

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.42  E-value=4.3e-12  Score=90.62  Aligned_cols=28  Identities=36%  Similarity=0.493  Sum_probs=25.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      +|+|.|++||||||+++.|++.+|+.++
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~   28 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVV   28 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence            5899999999999999999998877655

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK12338 hypothetical protein; Provisional

Probab=99.42  E-value=1.2e-11  Score=93.81  Aligned_cols=42  Identities=29%  Similarity=0.479  Sum_probs=36.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK   47 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~   47 (176)
                      |+++.+|+|+|+|||||||+|+.||+++|+.++..+|.++..
T Consensus         1 m~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~   42 (319)
T PRK12338          1 MRKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREV   42 (319)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHH
Confidence            457789999999999999999999999999998667776664

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.42  E-value=2.8e-12  Score=92.52  Aligned_cols=154  Identities=13%  Similarity=0.114  Sum_probs=76.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeE-eehhHHHhhcccCCCchhhhcccccch---------------------
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRH-INIGELVREKNLHDGWDDELECHVINE---------------------   64 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------   64 (176)
                      .++.+|+|+|||||||||+++.|.+. +..+ +......+.+...+.-+.++  .+.+.                     
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~-~~~~~~~~~~ttr~~r~~e~~g~~y--~fv~~~~f~~~~~~~~~le~~~~~g~   87 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER-KLPFHFVVTATTRPKRPGEIDGVDY--HFVTPEEFREMISQNELLEWAEVYGN   87 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc-CCcccccccccCCCCCCCCCCCCee--eeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence            36789999999999999999999764 3222 21111122111111101100  00010                     


Q ss_pred             --HHHHHHHHHHhhcC-CeEEcCCC--CCCCCCCcccEEEEEeC--ChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH
Q 030477           65 --DLVCDELEDIMEQG-GNIVDYHG--CDFFPERWFDRVVVLQT--ENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE  137 (176)
Q Consensus        65 --~~l~~~i~~~~~~~-~~vid~~~--~~~~~~~~~~~vi~l~~--~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  137 (176)
                        ......+...+..+ .+|++...  ...+....++.++++.+  +.+++.+|+..|+...   . ..-..++...+.+
T Consensus        88 ~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~---~-~~~~~Rl~~~~~e  163 (206)
T PRK14738         88 YYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTES---P-EELERRLATAPLE  163 (206)
T ss_pred             eecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCC---H-HHHHHHHHHHHHH
Confidence              11223444444443 45665321  12223334566555554  4668899999886321   1 1111233333332


Q ss_pred             HHhcCCCCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477          138 AKESYPEDIVLALKS-DTIEDITRNIAILTDW  168 (176)
Q Consensus       138 ~~~~~~~~~~i~~~~-~s~~ev~~~i~~~~~~  168 (176)
                      ...... ..++.+|+ .+++++.+.+..++..
T Consensus       164 ~~~~~~-~~~~iId~~~~~e~v~~~i~~~l~~  194 (206)
T PRK14738        164 LEQLPE-FDYVVVNPEDRLDEAVAQIMAIISA  194 (206)
T ss_pred             HhcccC-CCEEEECCCCCHHHHHHHHHHHHHH
Confidence            222222 24555665 3788888888877753

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=99.41  E-value=1.2e-11  Score=91.77  Aligned_cols=139  Identities=18%  Similarity=0.210  Sum_probs=79.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHH---HhhcCCeEEcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELED---IMEQGGNIVDYH   85 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~~~~~~vid~~   85 (176)
                      +.+|+|+|++||||||..+.| +.+|+.++|.=...--+                  .+.+.+..   ....-.+++|..
T Consensus         1 m~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDNlP~~Ll~------------------~l~~~~~~~~~~~~~~Ai~iD~R   61 (284)
T PF03668_consen    1 MELVIITGLSGAGKSTALRAL-EDLGYYCVDNLPPSLLP------------------QLIELLAQSNSKIEKVAIVIDIR   61 (284)
T ss_pred             CeEEEEeCCCcCCHHHHHHHH-HhcCeeEEcCCcHHHHH------------------HHHHHHHhcCCCCceEEEEEeCC
Confidence            468999999999999999999 67999888731110000                  00111110   000111223322


Q ss_pred             CCCCCCC-----------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC--CCcEEEecC
Q 030477           86 GCDFFPE-----------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP--EDIVLALKS  152 (176)
Q Consensus        86 ~~~~~~~-----------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~  152 (176)
                      ....+..           ...-.++||+|+.+++.+|...-.+.+|........+... ..++..++..  .+.+|++++
T Consensus        62 ~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~-~Er~~L~~lr~~Ad~vIDTs~  140 (284)
T PF03668_consen   62 SREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIE-KERELLEPLRERADLVIDTSN  140 (284)
T ss_pred             ChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHH-HHHHHHHHHHHhCCEEEECCC
Confidence            1111100           0112489999999999999987666667654332112211 1112222222  268899998


Q ss_pred             CCHHHHHHHHHHHHH
Q 030477          153 DTIEDITRNIAILTD  167 (176)
Q Consensus       153 ~s~~ev~~~i~~~~~  167 (176)
                      .++.++.+.+...+.
T Consensus       141 l~~~~Lr~~i~~~~~  155 (284)
T PF03668_consen  141 LSVHQLRERIRERFG  155 (284)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            899999988887653

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.41  E-value=5.9e-12  Score=95.80  Aligned_cols=105  Identities=21%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCchhhhcccccc---h----HHHHHHHHHHh-hcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWDDELECHVIN---E----DLVCDELEDIM-EQGG   79 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~l~~~i~~~~-~~~~   79 (176)
                      +.+|+++|+|||||||+|+.|++++ ++.+++.|++..........+.    +.+.   .    ....+.+...+ .+.+
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~g~~   77 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGE----YKFTKEKEDLVTKAQEAAALAALKSGKS   77 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccc----cccChHHHHHHHHHHHHHHHHHHHcCCe
Confidence            3689999999999999999999999 8999999887554322111110    1110   1    12223333333 3456


Q ss_pred             eEEcCCCCCC---------CCCCccc-EEEEEeCChHHHHHHHhhcCC
Q 030477           80 NIVDYHGCDF---------FPERWFD-RVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        80 ~vid~~~~~~---------~~~~~~~-~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      +|+|......         ....... .+|+|.+|.+++.+|+.+|+.
T Consensus        78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~  125 (300)
T PHA02530         78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE  125 (300)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc
Confidence            8888543211         1111122 369999999999999999853

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.40  E-value=1.9e-12  Score=91.58  Aligned_cols=107  Identities=17%  Similarity=0.127  Sum_probs=66.5

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCchh---hhc-ccccchHHHHHHHHHHhhcC-------
Q 030477           11 NILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWDD---ELE-CHVINEDLVCDELEDIMEQG-------   78 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~i~~~~~~~-------   78 (176)
                      +|.|+|+|||||||+|+.|++.+ ++.+++.|++............   ..+ ...++-+.+.+.+..+..++       
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~   80 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR   80 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence            58899999999999999999998 7889999988765431110000   000 01123344555554433221       


Q ss_pred             --------------------------------CeEEcCCCCCCCC--CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477           79 --------------------------------GNIVDYHGCDFFP--ERWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        79 --------------------------------~~vid~~~~~~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                                                      -+|+++...-..+  ...+|++||+++|.+++.+|..+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~  153 (187)
T cd02024          81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTG  153 (187)
T ss_pred             CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCC
Confidence                                            1333432210100  02478899999999999999998864

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.40  E-value=5.3e-12  Score=88.39  Aligned_cols=154  Identities=18%  Similarity=0.223  Sum_probs=90.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-C--------CCchhh------------hcccccc-hH-
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-H--------DGWDDE------------LECHVIN-ED-   65 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~--------~~~~~~------------~~~~~~~-~~-   65 (176)
                      +.+|.|+|..||||||+++.+ +.+|++++|.|.+.++... .        +.|+.+            ....++. .+ 
T Consensus         1 M~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~   79 (225)
T KOG3220|consen    1 MLIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK   79 (225)
T ss_pred             CeEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence            467899999999999999999 5899999999999887521 1        111111            1122221 11 


Q ss_pred             --------------HHHHHHHHHh-hcCC-eEEcCCCCCCCCC---CcccEEEEEeCChHHHHHHHhhcCCCCccccchh
Q 030477           66 --------------LVCDELEDIM-EQGG-NIVDYHGCDFFPE---RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI  126 (176)
Q Consensus        66 --------------~l~~~i~~~~-~~~~-~vid~~~~~~~~~---~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~  126 (176)
                                    .+++.+...+ .+.. +|+|...  +|..   .+...+|.+.||.++..+|+.+|+   +..+++.
T Consensus        80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPL--LFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd---~lse~dA  154 (225)
T KOG3220|consen   80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPL--LFEAKLLKICHKTVVVTCDEELQLERLVERD---ELSEEDA  154 (225)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechH--HHHHhHHhheeeEEEEEECcHHHHHHHHHhc---cccHHHH
Confidence                          1222222222 3333 4667532  1111   123468899999999999999987   3333222


Q ss_pred             HHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477          127 ECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVR  170 (176)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~  170 (176)
                      +. +++.++.-.. ......++.-|+++++++.+.+..+...++
T Consensus       155 e~-Rl~sQmp~~~-k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~~  196 (225)
T KOG3220|consen  155 EN-RLQSQMPLEK-KCELADVVIDNNGSLEDLYEQVEKVLALLQ  196 (225)
T ss_pred             HH-HHHhcCCHHH-HHHhhheeecCCCChHHHHHHHHHHHHHhc
Confidence            22 3333222111 122223444555689999999998887664

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.39  E-value=3.4e-12  Score=89.94  Aligned_cols=123  Identities=24%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---CCeEeehhH-HHhhcc---cCCCchhhhcccccchHHHHHHHHHHhhcCCeE
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---QLRHINIGE-LVREKN---LHDGWDDELECHVINEDLVCDELEDIMEQGGNI   81 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~v   81 (176)
                      +++|+++|+|||||||+|+.|++.|   ++.+++... +.+-..   ....+.+.+...+ .+. ....+...+.+.-||
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-~ks-~~rlldSalkn~~VI   78 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-LKS-VERLLDSALKNYLVI   78 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHH-HHH-HHHHHHHHhcceEEE
Confidence            5899999999999999999999988   333333322 211111   1111111111111 111 111333333333456


Q ss_pred             EcCCC-CCCCCCC---------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh
Q 030477           82 VDYHG-CDFFPER---------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE  140 (176)
Q Consensus        82 id~~~-~~~~~~~---------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  140 (176)
                      +|... ...+++.         ..-.+||+.||++++.+|...|+.  +     ...+.+.+++...++
T Consensus        79 vDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge--p-----ip~Evl~qly~RfEe  140 (261)
T COG4088          79 VDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE--P-----IPEEVLRQLYDRFEE  140 (261)
T ss_pred             EecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC--C-----CCHHHHHHHHHhhcC
Confidence            66432 2233321         133599999999999999876653  1     223456666665554

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.39  E-value=8.1e-12  Score=90.02  Aligned_cols=158  Identities=16%  Similarity=0.172  Sum_probs=80.3

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh--------cc------ccc----ch--
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL--------EC------HVI----NE--   64 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~------~~~----~~--   64 (176)
                      +|.++.+|+|.||+||||||+++.|+..++..++..+...+.+...+.-+.++        ..      ++.    ..  
T Consensus         1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (205)
T PRK00300          1 MMRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNY   80 (205)
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcc
Confidence            36688999999999999999999999987633333333333332211000000        00      000    00  


Q ss_pred             -HHHHHHHHHHhhcCC-eEEcCCC--CCCCCCCcc-cEEEEE-eCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477           65 -DLVCDELEDIMEQGG-NIVDYHG--CDFFPERWF-DRVVVL-QTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA  138 (176)
Q Consensus        65 -~~l~~~i~~~~~~~~-~vid~~~--~~~~~~~~~-~~vi~l-~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  138 (176)
                       ......++..+..+. +|+|...  ...+....+ ..+|++ .++.+++.+|+..|+...+.   .. ..++.....+.
T Consensus        81 y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~---~i-~~rl~~~~~~~  156 (205)
T PRK00300         81 YGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEE---VI-ARRLAKAREEI  156 (205)
T ss_pred             ccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHH---HH-HHHHHHHHHHH
Confidence             011334444444443 4555321  111111111 234444 56789999999988742211   11 12333333222


Q ss_pred             HhcCCC-CcEEEecCCCHHHHHHHHHHHHHHH
Q 030477          139 KESYPE-DIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       139 ~~~~~~-~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                      . .+.. +.++ +| .+.+++...+..+++..
T Consensus       157 ~-~~~~~d~vi-~n-~~~e~~~~~l~~il~~~  185 (205)
T PRK00300        157 A-HASEYDYVI-VN-DDLDTALEELKAIIRAE  185 (205)
T ss_pred             H-hHHhCCEEE-EC-CCHHHHHHHHHHHHHHH
Confidence            2 1222 4444 44 47888888888888554

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.38  E-value=2.3e-11  Score=85.90  Aligned_cols=146  Identities=18%  Similarity=0.175  Sum_probs=72.6

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCe---EeehhHHHhhcccC-C--------Cchhhh-cc-ccc---ch---HHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLR---HINIGELVREKNLH-D--------GWDDEL-EC-HVI---NE---DLVCD   69 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~---~~~~~~~~~~~~~~-~--------~~~~~~-~~-~~~---~~---~~l~~   69 (176)
                      .+|+|+|||||||||+++.|+..++..   .+....+.+..... .        .+.... .. +..   ..   .....
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            578999999999999999999977531   12111111110000 0        000000 00 000   00   00111


Q ss_pred             HHHHHh-hcCCeEEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcC
Q 030477           70 ELEDIM-EQGGNIVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESY  142 (176)
Q Consensus        70 ~i~~~~-~~~~~vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (176)
                      .+...+ .+..+|++...      ...++   ...+|||++|.+++.+|+..|+...+   +     .+...+. ....|
T Consensus        82 ~i~~~~~~g~~vv~~g~~~~~~~~~~~~~---~~~~i~l~~~~~~~~~Rl~~R~~~~~---~-----~~~~rl~-~~~~~  149 (179)
T TIGR02322        82 EIDQWLEAGDVVVVNGSRAVLPEARQRYP---NLLVVNITASPDVLAQRLAARGRESR---E-----EIEERLA-RSARF  149 (179)
T ss_pred             HHHHHHhcCCEEEEECCHHHHHHHHHHCC---CcEEEEEECCHHHHHHHHHHcCCCCH---H-----HHHHHHH-HHhhc
Confidence            233333 33455665421      11122   23689999999999999998864211   1     1111221 22233


Q ss_pred             C--C-CcEEEecCCCHHHHHHHHHHHHH
Q 030477          143 P--E-DIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       143 ~--~-~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      .  . +.++..++.+++++.+.+..++.
T Consensus       150 ~~~~~~~~vi~~~~~~ee~~~~i~~~l~  177 (179)
T TIGR02322       150 AAAPADVTTIDNSGSLEVAGETLLRLLR  177 (179)
T ss_pred             ccccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence            2  2 34434444588888888877663

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.37  E-value=7.5e-12  Score=87.45  Aligned_cols=149  Identities=17%  Similarity=0.102  Sum_probs=76.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCe--EeehhHHHhhcccCC-Cchhhh------c---ccc-cchHHHHHHHHHHh-
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLR--HINIGELVREKNLHD-GWDDEL------E---CHV-INEDLVCDELEDIM-   75 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~--~~~~~~~~~~~~~~~-~~~~~~------~---~~~-~~~~~l~~~i~~~~-   75 (176)
                      ++|+|.|+|.|||||+++.|.+.+.-+  ++..|.+........ ..+..+      .   ..+ .....+...++... 
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~   81 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR   81 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999988554  567788776432211 100000      0   000 01122333333333 


Q ss_pred             hcCCeEEcCCCC------CCCC---CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCc
Q 030477           76 EQGGNIVDYHGC------DFFP---ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDI  146 (176)
Q Consensus        76 ~~~~~vid~~~~------~~~~---~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (176)
                      .+.++|+|.-..      +.+.   ...+-+.|-+.||.+++.+|...|+..   ......     ..++.....-.-+.
T Consensus        82 aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR---~~G~a~-----~q~~~Vh~~~~YDl  153 (174)
T PF07931_consen   82 AGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDR---PIGLAA-----WQAEHVHEGGRYDL  153 (174)
T ss_dssp             TT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSS---STTHHH-----HHTTGGGTT---SE
T ss_pred             CCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCc---chHHHH-----HHHhhcccCCCCCE
Confidence            345678773111      1110   012335788899999999999999842   221110     01111111112267


Q ss_pred             EEEecCCCHHHHHHHHHHHH
Q 030477          147 VLALKSDTIEDITRNIAILT  166 (176)
Q Consensus       147 ~i~~~~~s~~ev~~~i~~~~  166 (176)
                      .++++..++++.++.|.+.+
T Consensus       154 eVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  154 EVDTSATSPEECAREILARL  173 (174)
T ss_dssp             EEETTSS-HHHHHHHHHTT-
T ss_pred             EEECCCCCHHHHHHHHHHHh
Confidence            77887779999888887654

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK06547 hypothetical protein; Provisional

Probab=99.37  E-value=1.9e-11  Score=85.70  Aligned_cols=111  Identities=16%  Similarity=0.124  Sum_probs=64.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCc----hhhh----cccc--cc--hHHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGW----DDEL----ECHV--IN--EDLVCDELED   73 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~--~~--~~~l~~~i~~   73 (176)
                      ...+.+|+|+|++||||||+++.|++.+++++++.|++.....-....    ...+    ....  ++  .+.. .....
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~-~~~~~   90 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRP-GDWVS   90 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCC-CCcEE
Confidence            356789999999999999999999999999999998876432110000    0000    0000  00  0000 00000


Q ss_pred             HhhcCCeEEcCCCCCCC-CCCccc-----EEEEEeCChHHHHHHHhhcCC
Q 030477           74 IMEQGGNIVDYHGCDFF-PERWFD-----RVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        74 ~~~~~~~vid~~~~~~~-~~~~~~-----~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      +-....+|++....-.- -+...+     +.|||++|.+++.+|..+|+.
T Consensus        91 l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~  140 (172)
T PRK06547         91 VEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDP  140 (172)
T ss_pred             eCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCc
Confidence            00122345564321100 011234     799999999999999999974

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=99.36  E-value=1.7e-11  Score=89.92  Aligned_cols=115  Identities=21%  Similarity=0.355  Sum_probs=73.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEe---ehhHHHhhcc------cCCCchh--------------------hh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHI---NIGELVREKN------LHDGWDD--------------------EL   57 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~---~~~~~~~~~~------~~~~~~~--------------------~~   57 (176)
                      .+.++|++.|+.|||||++|+.||++||+.++   ++|++.-..-      ...++..                    .+
T Consensus        69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~  148 (393)
T KOG3877|consen   69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAM  148 (393)
T ss_pred             ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHH
Confidence            35689999999999999999999999998765   4555533221      1111110                    01


Q ss_pred             ccccc--chHHHHHHHHHHh-hcCCeEEcCCC------------CCCCCC-----------------CcccEEEEEeCCh
Q 030477           58 ECHVI--NEDLVCDELEDIM-EQGGNIVDYHG------------CDFFPE-----------------RWFDRVVVLQTEN  105 (176)
Q Consensus        58 ~~~~~--~~~~l~~~i~~~~-~~~~~vid~~~------------~~~~~~-----------------~~~~~vi~l~~~~  105 (176)
                      +..++  +-++.++.++.++ .+.|+|++.+-            ...+..                 -++.+||||+.|.
T Consensus       149 Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv  228 (393)
T KOG3877|consen  149 QDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPV  228 (393)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCc
Confidence            11111  1144556666666 56789986321            011111                 1477999999999


Q ss_pred             HHHHHHHhhcCCCCcc
Q 030477          106 SVLYDRLTKRGYTGAK  121 (176)
Q Consensus       106 ~~~~~R~~~r~~~~~~  121 (176)
                      ....+++.+|+...+.
T Consensus       229 ~~v~~~Ik~rg~~~Ei  244 (393)
T KOG3877|consen  229 NKVLENIKRRGNTDEI  244 (393)
T ss_pred             HHHHHHHHhcCCCcce
Confidence            9999999999875543

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.36  E-value=1.7e-11  Score=90.98  Aligned_cols=102  Identities=23%  Similarity=0.276  Sum_probs=59.3

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhc-CCeEEcC
Q 030477           11 NILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQ-GGNIVDY   84 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~vid~   84 (176)
                      +|+|+|+|||||||+|+.|++.+   |  +.+++.|.+......   +.......+  .+.....++..+.. ..+|+|.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~---~~~~~e~~~--~~~~~~~i~~~l~~~~~VI~D~   75 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV---WKEKYEEFI--RDSTLYLIKTALKNKYSVIVDD   75 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH---hhHHhHHHH--HHHHHHHHHHHHhCCCeEEEec
Confidence            58999999999999999999987   3  344554444322111   111111111  12223344444443 3467775


Q ss_pred             CCCC-CC--------CC-CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           85 HGCD-FF--------PE-RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        85 ~~~~-~~--------~~-~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      .... .+        .. .....+|||++|.+++.+|...|+.
T Consensus        76 ~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~  118 (249)
T TIGR03574        76 TNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE  118 (249)
T ss_pred             cchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC
Confidence            3210 00        00 1234689999999999999988763

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.35  E-value=2.5e-11  Score=85.44  Aligned_cols=152  Identities=14%  Similarity=0.093  Sum_probs=77.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcC-C
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQG-G   79 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~-~   79 (176)
                      .++.+|+|+|+|||||||+++.|+..+   |  +.+++.|.+.........+..+.....+  ..+. .+...+ ..+ .
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~--~~~~-~~a~~~~~~g~~   78 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNI--RRIG-FVANLLTRHGVI   78 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHH--HHHH-HHHHHHHhCCCE
Confidence            356799999999999999999999987   2  5667876654332111111110000000  1111 122222 223 3


Q ss_pred             eEEcCCCCC-----CCCC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC---CcEEEe
Q 030477           80 NIVDYHGCD-----FFPE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE---DIVLAL  150 (176)
Q Consensus        80 ~vid~~~~~-----~~~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~  150 (176)
                      ++++.....     .+.. ...-.+|||++|++++.+|.. |+    ...... .+.+..++..+.+.|.+   +..+++
T Consensus        79 vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~-~~----l~~~~~-~~~i~~~~~~~~~~~~p~~ad~~i~~  152 (175)
T PRK00889         79 VLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRDV-KG----LYAKAR-AGEIKHFTGIDDPYEPPLNPEVECRT  152 (175)
T ss_pred             EEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCc-cc----HHHHHH-cCCCCCCcccCCCCCCCCCCcEEEEC
Confidence            445543210     0000 012358999999999999942 11    000000 00111122334455542   466666


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 030477          151 KSDTIEDITRNIAILTD  167 (176)
Q Consensus       151 ~~~s~~ev~~~i~~~~~  167 (176)
                      +..+++++.+.+...+.
T Consensus       153 ~~~~~~~~~~~i~~~l~  169 (175)
T PRK00889        153 DLESLEESVDKVLQKLE  169 (175)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            66688877777666654

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.34  E-value=5.2e-11  Score=82.39  Aligned_cols=159  Identities=16%  Similarity=0.145  Sum_probs=93.0

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhccccc--------------chH--HHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVI--------------NED--LVCD   69 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~l~~   69 (176)
                      |.++.+|++.|..+|||||.+..|.+.+ .+..+.....+.+......+.-...++.              ..+  ...+
T Consensus         2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l-~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~   80 (208)
T KOG3327|consen    2 MIRGALIVLEGLDRSGKSTQCGKLVESL-IPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS   80 (208)
T ss_pred             CCCccEEeeeccccCCceeehhHHHHHH-HhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence            5688999999999999999999999987 3333334444554433333322222221              111  1233


Q ss_pred             HHHHHh-hcCCeEEcCCC--------C------------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHH
Q 030477           70 ELEDIM-EQGGNIVDYHG--------C------------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC  128 (176)
Q Consensus        70 ~i~~~~-~~~~~vid~~~--------~------------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~  128 (176)
                      .|++-+ .+..+|+|...        .            .+++  .||+++||+++|+++.+| .  ++..++.+....+
T Consensus        81 ~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~--KPDlvlfL~v~p~~~a~r-g--gfG~Erye~v~fq  155 (208)
T KOG3327|consen   81 LIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLP--KPDLVLFLDVSPEDAARR-G--GFGEERYETVAFQ  155 (208)
T ss_pred             HHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCC--CCCeEEEEeCCHHHHHHh-c--CcchhHHHHHHHH
Confidence            444433 33446776311        1            1222  389999999999995554 3  3334555444434


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHHHh
Q 030477          129 EIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWVRN  171 (176)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~~  171 (176)
                      +.....+.... ......+..+|+. +.++|.+.|..+++.+..
T Consensus       156 ekv~~~~q~l~-r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~  198 (208)
T KOG3327|consen  156 EKVLVFFQKLL-RKEDLNWHVVDASKSVEKVHQQVRSLVENVLS  198 (208)
T ss_pred             HHHHHHHHHHH-hccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence            43333333333 1222355566665 899999999999887644

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.34  E-value=1.5e-11  Score=88.04  Aligned_cols=111  Identities=20%  Similarity=0.255  Sum_probs=69.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCe---EeehhHHHhhcccCCC---chhhhcc-cccchHHHHHHHHHHhhcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLR---HINIGELVREKNLHDG---WDDELEC-HVINEDLVCDELEDIMEQGG   79 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~---~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~l~~~i~~~~~~~~   79 (176)
                      .+..+|.|.|++||||||+|+.|.+.++..   .++.|++.........   ..-.+.. ..++.+.+.+.+..+..++.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~   85 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP   85 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence            344789999999999999999999999854   6788887664321110   0000110 11345677777777666555


Q ss_pred             eEEc---CCC-------CCCCCC-----------------CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           80 NIVD---YHG-------CDFFPE-----------------RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        80 ~vid---~~~-------~~~~~~-----------------~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      +.+.   +..       ....|.                 ...++.||+++|.+++..|...|+.
T Consensus        86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~  150 (218)
T COG0572          86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDV  150 (218)
T ss_pred             ccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHH
Confidence            4331   100       000000                 1367899999999999888776754

>PTZ00301 uridine kinase; Provisional

Probab=99.34  E-value=5.8e-11  Score=85.71  Aligned_cols=110  Identities=17%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc----C---CeEeehhHHHhhcccCCCchh---hhc-ccccchHHHHHHHHHHhh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST----Q---LRHINIGELVREKNLHDGWDD---ELE-CHVINEDLVCDELEDIME   76 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l----~---~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~i~~~~~   76 (176)
                      +-.+|.|+|+|||||||+|+.|++++    |   ..+++.|++............   .++ ...++.+.+.+.+..+..
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~   81 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKS   81 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHc
Confidence            45789999999999999999998776    2   335666776543311110000   000 012234555555544333


Q ss_pred             cCC------------------------e-EEcCCCCCCCC--CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477           77 QGG------------------------N-IVDYHGCDFFP--ERWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        77 ~~~------------------------~-vid~~~~~~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      ++.                        + |+++...-..+  +...|+.||+++|.+++..|...|+.
T Consensus        82 g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~  149 (210)
T PTZ00301         82 GKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDM  149 (210)
T ss_pred             CCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhH
Confidence            211                        1 22321110000  02467899999999999999888875

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.33  E-value=3.4e-12  Score=90.66  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=39.4

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccc-hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTN-NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNI  162 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i  162 (176)
                      .||++|||++|++++.+|+..|+.......+ ..........+.....  ..+.++.+++. +++++.+.|
T Consensus       118 ~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~l~~--~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  118 KPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAYLELAK--DPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             E-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHHHHHHH--TTTTEEEEETTS-HHHHHHHH
T ss_pred             CCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHc--CCCCEEEEECCCCHHHHHhhC
Confidence            5899999999999999999988861111111 1112233333333333  23455666655 788887765

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.31  E-value=2.3e-11  Score=85.89  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=28.7

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVR   45 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~   45 (176)
                      +.+|+|.||+||||||+++.|++.++..++......+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr   37 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTR   37 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccccccceee
Confidence            3689999999999999999999977655554443333

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.30  E-value=8.6e-12  Score=85.42  Aligned_cols=102  Identities=20%  Similarity=0.173  Sum_probs=53.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhc-CCeE
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQ-GGNI   81 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~v   81 (176)
                      ++.+|||+|.|||||||+|++|.++|   |  ..+++.|.+.......-.+..+-+.-.   -.-+..+..++.. +.++
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~---~rr~~~~A~ll~~~G~iv   77 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREEN---IRRIAEVAKLLADQGIIV   77 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHH---HHHHHHHHHHHHHTTSEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHH---HHHHHHHHHHHHhCCCeE
Confidence            46789999999999999999999987   3  456775554433222222221111000   0011223334433 3333


Q ss_pred             E-cCCC---------CCCCCCCcccEEEEEeCChHHHHHHHh
Q 030477           82 V-DYHG---------CDFFPERWFDRVVVLQTENSVLYDRLT  113 (176)
Q Consensus        82 i-d~~~---------~~~~~~~~~~~vi~l~~~~~~~~~R~~  113 (176)
                      | ....         .+.++.. .-+.||++||.+++.+|-.
T Consensus        78 Iva~isp~~~~R~~~R~~~~~~-~f~eVyv~~~~e~~~~RD~  118 (156)
T PF01583_consen   78 IVAFISPYREDREWARELIPNE-RFIEVYVDCPLEVCRKRDP  118 (156)
T ss_dssp             EEE----SHHHHHHHHHHHHTT-EEEEEEEES-HHHHHHHTT
T ss_pred             EEeeccCchHHHHHHHHhCCcC-ceEEEEeCCCHHHHHHhCc
Confidence            3 3211         1111111 1357999999999999953

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG0645 Predicted kinase [General function prediction only]

Probab=99.30  E-value=4e-11  Score=82.13  Aligned_cols=107  Identities=19%  Similarity=0.109  Sum_probs=71.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccch-------HHHHHHHHHHh-hcCCeE
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE-------DLVCDELEDIM-EQGGNI   81 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~i~~~~-~~~~~v   81 (176)
                      .++++.|.|||||||+++.|++.+|+..|..|.+....... +.....+..++..       +.+......++ .+.++|
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~-p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VV   80 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGV-PEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVV   80 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCC-cccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            57899999999999999999999999999988876665431 1111111222321       22333333344 557899


Q ss_pred             EcCCCCCCCCCC----------cccEEEEEeCChHHHHHHHhhcCC
Q 030477           82 VDYHGCDFFPER----------WFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        82 id~~~~~~~~~~----------~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      +|........+.          -.-..|.+.++.+++..|+..|..
T Consensus        81 lDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          81 LDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             EecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence            997543222221          122468899999999999998874

>PRK06696 uridine kinase; Validated

Probab=99.28  E-value=1.3e-10  Score=84.94  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEe--ehhHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHI--NIGELVR   45 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~--~~~~~~~   45 (176)
                      .++.+|.|+|++||||||+|+.|++.+   |.+++  +.|++..
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~   63 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN   63 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence            467899999999999999999999998   55554  4777653

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.28  E-value=4.7e-11  Score=96.37  Aligned_cols=114  Identities=13%  Similarity=0.158  Sum_probs=76.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcCCeEEcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQGGNIVDYH   85 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~vid~~   85 (176)
                      .++.+|+++|+|||||||+|+.++...|+.+++.|.+-.                  .+.+...++..+ .+..+|+|.+
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------~~~~~~~a~~~L~~G~sVVIDaT  428 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------TQNCLTACERALDQGKRCAIDNT  428 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------HHHHHHHHHHHHhCCCcEEEECC
Confidence            467899999999999999999999999999999887521                  122344455444 5578999976


Q ss_pred             CCCCCCCC----------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHH
Q 030477           86 GCDFFPER----------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAK  139 (176)
Q Consensus        86 ~~~~~~~~----------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~  139 (176)
                      ....-.+.          .+-..+|+++|.+++.+|+..|...... ........+..+....+
T Consensus       429 n~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s-~~~vp~~v~~~~~k~fE  491 (526)
T TIGR01663       429 NPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSA-HIKIKDMVFNGMKKKFE  491 (526)
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcc-cCCCCHHHHHHHHhhCC
Confidence            53321111          1235789999999999999988652221 11222234555555544

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.28  E-value=2.3e-11  Score=86.24  Aligned_cols=102  Identities=17%  Similarity=0.091  Sum_probs=57.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGN   80 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~   80 (176)
                      .++.+|+|+|+|||||||+++.|+..+   |  ..+++.+++.........+......-.+  ..+......+.. +..+
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~V   93 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENI--RRIGEVAKLFVRNGIIV   93 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHH--HHHHHHHHHHHcCCCEE
Confidence            567899999999999999999999886   3  4567766554322111111110000000  112222222333 3445


Q ss_pred             EEcCCCCC---------CCCCCcccEEEEEeCChHHHHHH
Q 030477           81 IVDYHGCD---------FFPERWFDRVVVLQTENSVLYDR  111 (176)
Q Consensus        81 vid~~~~~---------~~~~~~~~~vi~l~~~~~~~~~R  111 (176)
                      |+|.....         ..+. ..-.+|||++|.+++.+|
T Consensus        94 I~d~~~~~~~~r~~~~~~~~~-~~~~~v~l~~~~e~~~~R  132 (184)
T TIGR00455        94 ITSFISPYRADRQMVRELIEK-GEFIEVFVDCPLEVCEQR  132 (184)
T ss_pred             EEecCCCCHHHHHHHHHhCcC-CCeEEEEEeCCHHHHHHh
Confidence            66653211         1111 123579999999999998

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.28  E-value=1.4e-10  Score=82.97  Aligned_cols=40  Identities=28%  Similarity=0.427  Sum_probs=36.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK   47 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~   47 (176)
                      ++.+|+|+|+|||||||+|+.|++++|+.++..+|++++.
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~   41 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREF   41 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHH
Confidence            5679999999999999999999999999988888887765

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=99.27  E-value=2.2e-10  Score=83.41  Aligned_cols=139  Identities=17%  Similarity=0.195  Sum_probs=78.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHH---HhhcCCeEEcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELED---IMEQGGNIVDYH   85 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~~~~~~vid~~   85 (176)
                      +.+|+|+|.+|||||+..+.| +.+|+.++|.=...--+.                  +.+.+..   ....-.+++|..
T Consensus         1 m~lvIVTGlSGAGKsvAl~~l-EDlGyycvDNLPp~Llp~------------------~~~~~~~~~~~~~kvAv~iDiR   61 (286)
T COG1660           1 MRLVIVTGLSGAGKSVALRVL-EDLGYYCVDNLPPQLLPK------------------LADLMLTLESRITKVAVVIDVR   61 (286)
T ss_pred             CcEEEEecCCCCcHHHHHHHH-HhcCeeeecCCCHHHHHH------------------HHHHHhhcccCCceEEEEEecc
Confidence            368999999999999999999 669988876311100000                  0000000   001112222221


Q ss_pred             CCCCCCC----------Cc--ccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEec
Q 030477           86 GCDFFPE----------RW--FDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALK  151 (176)
Q Consensus        86 ~~~~~~~----------~~--~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~  151 (176)
                      ....+..          ..  .-.++||+++.+++.+|...-.+.+|......-.+... ..++...+..+  +.+|+++
T Consensus        62 s~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~-~ERelL~pLk~~A~~vIDTs  140 (286)
T COG1660          62 SREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIA-KERELLAPLREIADLVIDTS  140 (286)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHH-HHHHHHHHHHHHhhhEeecc
Confidence            1111000          00  02489999999999999987666667665433111111 11111222222  5899999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 030477          152 SDTIEDITRNIAILTD  167 (176)
Q Consensus       152 ~~s~~ev~~~i~~~~~  167 (176)
                      ..++.++.+.|...+.
T Consensus       141 ~ls~~~Lr~~i~~~f~  156 (286)
T COG1660         141 ELSVHELRERIRTRFL  156 (286)
T ss_pred             cCCHHHHHHHHHHHHc
Confidence            8999999999887764

>PHA00729 NTP-binding motif containing protein

Probab=99.25  E-value=1.1e-11  Score=89.58  Aligned_cols=109  Identities=16%  Similarity=0.209  Sum_probs=70.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCe--EeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcC---C-eEE
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLR--HINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQG---G-NIV   82 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~---~-~vi   82 (176)
                      ...|+|+|+||+||||+|..|+++++..  .+..++.        .+.......+++.+.+...+.....+.   + +|+
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~--------~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlLII   88 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDD--------AWQYVQNSYFFELPDALEKIQDAIDNDYRIPLIIF   88 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhh--------HHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEEEE
Confidence            3579999999999999999999987522  2222221        122223445566677777776644331   3 477


Q ss_pred             cCCCCCC----CC--------------CCcccEEEEEeCChHHHHHHHhhcCCCCccccch
Q 030477           83 DYHGCDF----FP--------------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN  125 (176)
Q Consensus        83 d~~~~~~----~~--------------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~  125 (176)
                      |.-....    +.              +.+.+.++++.++++.+.+|+..|++....+.++
T Consensus        89 Dd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~~~~kI~en  149 (226)
T PHA00729         89 DDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGWYQIRVTMV  149 (226)
T ss_pred             eCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCCcHHHhhhc
Confidence            7511100    01              1136678999999999999999999976655544

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.23  E-value=5.9e-10  Score=79.95  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=29.8

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc---CCeEeehhHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAEST---QLRHINIGELVR   45 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~~~~   45 (176)
                      +|.|+|++||||||+++.|+..+   +..+++.|++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            58899999999999999999877   467788887654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00235 udk uridine kinase

Probab=99.23  E-value=3.8e-10  Score=81.51  Aligned_cols=110  Identities=17%  Similarity=0.225  Sum_probs=62.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC---CeEeehhHHHhhccc---CCCchhhhc-ccccchHHHHHHHHHHhhcC-
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGELVREKNL---HDGWDDELE-CHVINEDLVCDELEDIMEQG-   78 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~l~~~i~~~~~~~-   78 (176)
                      .++.+|.|+|++||||||+++.|+..++   ..+++.|+.......   .......+. ...++.+.+.+.+..+..+. 
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~   83 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSP   83 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCC
Confidence            4667899999999999999999998774   456776665322100   000000000 00112233444444433221 


Q ss_pred             ------------------------CeEEcCCCCCCCCC---CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           79 ------------------------GNIVDYHGCDFFPE---RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        79 ------------------------~~vid~~~~~~~~~---~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                                              -+|+|+... ++..   ..++.+||+++|.+++..|...|..
T Consensus        84 v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~-~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~  148 (207)
T TIGR00235        84 IDVPVYDYVNHTRPKETVHIEPKDVVILEGIMP-LFDERLRDLMDLKIFVDTPLDIRLIRRIERDI  148 (207)
T ss_pred             EecccceeecCCCCCceEEeCCCCEEEEEehhh-hchHhHHHhCCEEEEEECChhHHHHHHHHHHH
Confidence                                    123342111 1111   1467899999999999999887754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.22  E-value=1.5e-10  Score=86.50  Aligned_cols=105  Identities=19%  Similarity=0.119  Sum_probs=55.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCC-eEE
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGG-NIV   82 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~-~vi   82 (176)
                      |++|+|+|.|||||||+|+.|.+.+   +  ..+++.+.+......+.....+    -.....+...+...+.... ||+
T Consensus         1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~E----k~~R~~l~s~v~r~ls~~~iVI~   76 (270)
T PF08433_consen    1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKE----KEARGSLKSAVERALSKDTIVIL   76 (270)
T ss_dssp             E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGH----HHHHHHHHHHHHHHHTT-SEEEE
T ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhh----HHHHHHHHHHHHHhhccCeEEEE
Confidence            5799999999999999999998875   3  3445644443122111111100    0112345556666555544 455


Q ss_pred             cCCC-CCCCCCC---------cccEEEEEeCChHHHHHHHhhcCC
Q 030477           83 DYHG-CDFFPER---------WFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        83 d~~~-~~~~~~~---------~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      |... ..+++..         ....+||+.+|.+.+.+|..+|..
T Consensus        77 Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~  121 (270)
T PF08433_consen   77 DDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE  121 (270)
T ss_dssp             -S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-
T ss_pred             eCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC
Confidence            6432 2222211         123689999999999999998874

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>smart00072 GuKc Guanylate kinase homologues

Probab=99.21  E-value=3.2e-10  Score=80.44  Aligned_cols=25  Identities=32%  Similarity=0.516  Sum_probs=23.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +++|+|+||+||||+|+++.|.+..
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            4689999999999999999999886

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.17  E-value=1.4e-10  Score=96.48  Aligned_cols=151  Identities=14%  Similarity=0.100  Sum_probs=78.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCeE
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGNI   81 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~v   81 (176)
                      ++++|+++|+|||||||+|+.|++++     ++.+++.|++.........+..+.....+  ..+......... +..+|
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~--~~l~~~a~~~~~~G~~Vi  536 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENI--RRVAEVARLMADAGLIVL  536 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHH--HHHHHHHHHHHhCCCEEE
Confidence            68899999999999999999999987     35678866654422211111111100000  112222222222 23456


Q ss_pred             EcCCCCC-----CCCC---CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC----CCcEEE
Q 030477           82 VDYHGCD-----FFPE---RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP----EDIVLA  149 (176)
Q Consensus        82 id~~~~~-----~~~~---~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~  149 (176)
                      +|.....     .+..   ...-.+|||++|.+++.+|.. |+    ...... .+.+..+...+.+ |.    .+.+++
T Consensus       537 vda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~-r~----L~~~~~-~~~l~~l~~~r~~-y~~P~~a~~~Id  609 (632)
T PRK05506        537 VSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDP-KG----LYAKAR-AGEIKNFTGIDSP-YEAPENPELRLD  609 (632)
T ss_pred             EECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCC-cc----hhhhcc-ccccccccccccC-CCCCCCCeEEEe
Confidence            6643211     0110   012368999999999999942 22    211100 1112223233333 33    135555


Q ss_pred             ecCCCHHHHHHHHHHHHH
Q 030477          150 LKSDTIEDITRNIAILTD  167 (176)
Q Consensus       150 ~~~~s~~ev~~~i~~~~~  167 (176)
                      ++..+++++.+.+...+.
T Consensus       610 ~~~~s~~e~v~~Ii~~l~  627 (632)
T PRK05506        610 TTGRSPEELAEQVLELLR  627 (632)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            555688877776666553

>PRK07667 uridine kinase; Provisional

Probab=99.17  E-value=4.2e-10  Score=80.44  Aligned_cols=39  Identities=26%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVRE   46 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~   46 (176)
                      ...+|.|+|++||||||+|+.|++.++     ..+++.|++...
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~   59 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE   59 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence            447899999999999999999999763     457888887543

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.16  E-value=1.1e-09  Score=74.48  Aligned_cols=149  Identities=19%  Similarity=0.240  Sum_probs=80.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC----CeEeehhHHHhhcccC-C---Cch-hhh-----c-ccccch------HH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ----LRHINIGELVREKNLH-D---GWD-DEL-----E-CHVINE------DL   66 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~----~~~~~~~~~~~~~~~~-~---~~~-~~~-----~-~~~~~~------~~   66 (176)
                      ++.+|++.||+|+||-|+.......+.    +.|+. --+.+..... +   ... .++     . .+.+..      -.
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvr-RvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg   82 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVR-RVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG   82 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEE-EEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence            578999999999999999999988773    22221 1111111111 0   000 000     0 000000      01


Q ss_pred             HHHHHHHHhhcCCeEEcCCCCCCCCCC---cc-cEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcC
Q 030477           67 VCDELEDIMEQGGNIVDYHGCDFFPER---WF-DRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESY  142 (176)
Q Consensus        67 l~~~i~~~~~~~~~vid~~~~~~~~~~---~~-~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (176)
                      +-..|...+..+.+++-.-+...+|..   ++ -.++.|.++++++.+|+..|+++.  .+     ++...+.+...-..
T Consensus        83 ip~eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGREs--~e-----eI~aRL~R~a~~~~  155 (192)
T COG3709          83 IPAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGRES--RE-----EILARLARAARYTA  155 (192)
T ss_pred             CchhHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhccCC--HH-----HHHHHHHhhccccc
Confidence            344555566667777755555555542   22 358999999999999999999732  11     23444443322222


Q ss_pred             CCCcEEEecCC-CHHHHHHHHHH
Q 030477          143 PEDIVLALKSD-TIEDITRNIAI  164 (176)
Q Consensus       143 ~~~~~i~~~~~-s~~ev~~~i~~  164 (176)
                      .+..+..++|. ..+..-+.+..
T Consensus       156 ~~~dv~~idNsG~l~~ag~~ll~  178 (192)
T COG3709         156 GPGDVTTIDNSGELEDAGERLLA  178 (192)
T ss_pred             CCCCeEEEcCCCcHHHHHHHHHH
Confidence            24567777765 44433333333

>PLN02348 phosphoribulokinase

Probab=99.14  E-value=8.2e-10  Score=85.72  Aligned_cols=109  Identities=16%  Similarity=0.178  Sum_probs=63.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC--------------------eEeehhHHHhhccc---CCCchhhhcccccc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL--------------------RHINIGELVREKNL---HDGWDDELECHVIN   63 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~--------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   63 (176)
                      .++.+|.|.|++||||||+++.|++.+|.                    .++++|++......   ..... ..+....+
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t-~ldP~a~d  125 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVT-ALDPRANN  125 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCc-cCCccccc
Confidence            45678889999999999999999998852                    46788887532111   00100 00001112


Q ss_pred             hHHHHHHHHHHhhcCC------------------------eEEcCCCCCCCC---CCcccEEEEEeCChHHHHHHHhhcC
Q 030477           64 EDLVCDELEDIMEQGG------------------------NIVDYHGCDFFP---ERWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        64 ~~~l~~~i~~~~~~~~------------------------~vid~~~~~~~~---~~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      -+.+.+.+..+..+..                        +|++.... +++   +..+|+.||+++++++...|..+|.
T Consensus       126 fDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~-L~~e~lr~l~D~~IyVd~~~dvrl~RRI~RD  204 (395)
T PLN02348        126 FDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHP-MYDERVRDLLDFSIYLDISDDVKFAWKIQRD  204 (395)
T ss_pred             HHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhh-ccCccccccCcEEEEEECCHHHHHHHHHHhh
Confidence            3445555554333221                        22232110 111   1247889999999999877766665


Q ss_pred             C
Q 030477          117 Y  117 (176)
Q Consensus       117 ~  117 (176)
                      .
T Consensus       205 ~  205 (395)
T PLN02348        205 M  205 (395)
T ss_pred             H
Confidence            4

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.13  E-value=1.9e-10  Score=82.30  Aligned_cols=105  Identities=20%  Similarity=0.313  Sum_probs=58.6

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcC---------CeEeehhHHHhhccc-------CCCchhhhcccccchHHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQ---------LRHINIGELVREKNL-------HDGWDDELECHVINEDLVCDELEDI   74 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~---------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~i~~~   74 (176)
                      +|.|+|++||||||+|+.|+..++         ..+++.|........       ...+.. .....++-+.+.+.+..+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~p~a~d~~~l~~~l~~L   79 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNF-DHPDAFDFDLLKEDLKAL   79 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSST-TSGGGBSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCC-CCccccCHHHHHHHHHHH
Confidence            589999999999999999999886         235555654322211       011110 011123335555555554


Q ss_pred             hhcCCe-------------------------EEcCCCCCCCC---CCcccEEEEEeCChHHHHHHHhhcCC
Q 030477           75 MEQGGN-------------------------IVDYHGCDFFP---ERWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        75 ~~~~~~-------------------------vid~~~~~~~~---~~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      ..++.+                         |+++.. .++.   +..+|+.|||+++.+++..|...|+.
T Consensus        80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~-~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~  149 (194)
T PF00485_consen   80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIY-ALYDEELRDLFDLKIFLDADEDLRLERRIQRDV  149 (194)
T ss_dssp             HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETT-TTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHH
T ss_pred             hCCCcccccccccccccceeeeeecCCCCEEEEcccc-eeeeeeecccceeEEEecccHHHHHHHHhhhhc
Confidence            333221                         222111 1111   13468999999999998888776754

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.11  E-value=2.7e-10  Score=80.78  Aligned_cols=152  Identities=20%  Similarity=0.319  Sum_probs=74.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeE-eehhHHHhhcccCCCchhhhcccccchHH--------------------
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRH-INIGELVREKNLHDGWDDELECHVINEDL--------------------   66 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------   66 (176)
                      +++.|+|+||+||||||+++.|.+.++-.+ .......+.+...+.-+.++  ++.+.+.                    
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y--~fvs~~~f~~~~~~~~fie~~~~~g~~   78 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDY--HFVSKEEFERMIKAGEFIEYGEYDGNY   78 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSE--EE--HHHHHHHHHTTHEEEEEEETTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcce--EEEeechhhhhhccccEEEEeeecchh
Confidence            468999999999999999999998874322 22223333333222212111  1112221                    


Q ss_pred             ---HHHHHHHHhh-cCCeEEcCC--CCCCCCC-CcccEEEEEeCC-hHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477           67 ---VCDELEDIME-QGGNIVDYH--GCDFFPE-RWFDRVVVLQTE-NSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA  138 (176)
Q Consensus        67 ---l~~~i~~~~~-~~~~vid~~--~~~~~~~-~~~~~vi~l~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  138 (176)
                         ....+..... +..+++|..  ....+.. ...-.+||+.++ .+++.+|+..|+..   ..+.. .+++...... 
T Consensus        79 YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~---~~~~i-~~r~~~~~~~-  153 (183)
T PF00625_consen   79 YGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDE---SEEEI-EERLERAEKE-  153 (183)
T ss_dssp             EEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHC---HHHHH-HHHHHHHHHH-
T ss_pred             hhhccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccc---cHHHH-HHHHHHHHHH-
Confidence               2233333333 334455421  1111111 112257888655 68888888766521   11111 1122222222 


Q ss_pred             HhcCCC-CcEEEecCCCHHHHHHHHHHHHHH
Q 030477          139 KESYPE-DIVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       139 ~~~~~~-~~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      ...+.. +.++ . +++.+++.+.+.++++.
T Consensus       154 ~~~~~~fd~vi-~-n~~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  154 FEHYNEFDYVI-V-NDDLEEAVKELKEIIEQ  182 (183)
T ss_dssp             HGGGGGSSEEE-E-CSSHHHHHHHHHHHHHH
T ss_pred             HhHhhcCCEEE-E-CcCHHHHHHHHHHHHHh
Confidence            223322 3333 3 35788888888888763

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.09  E-value=9.2e-10  Score=75.50  Aligned_cols=101  Identities=20%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCeEEcC
Q 030477           11 NILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGNIVDY   84 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~vid~   84 (176)
                      +|+|+|+|||||||+++.|++.+   |.  .+++.|.+.........+......-.+  ..+....+.+.. +..+|+|.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~--~~~~~~a~~l~~~G~~VIid~   78 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENI--RRIAEVAKLLADAGLIVIAAF   78 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHH--HHHHHHHHHHHhCCCEEEEcc
Confidence            47899999999999999999988   53  455655544322111111110000000  112222222333 33456675


Q ss_pred             CCCC---------CCCCCcccEEEEEeCChHHHHHHHhh
Q 030477           85 HGCD---------FFPERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        85 ~~~~---------~~~~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                      ....         ... ...-.++||++|.+++.+|..+
T Consensus        79 ~~~~~~~R~~~~~l~~-~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          79 ISPYREDREAARKIIG-GGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             CCCCHHHHHHHHHhcC-CCCEEEEEEeCCHHHHHHhCch
Confidence            4311         111 1233579999999999999654

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK05439 pantothenate kinase; Provisional

Probab=99.08  E-value=1.1e-09  Score=83.21  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHHHhhcc------cCCCchhhhcccccchHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIGELVREKN------LHDGWDDELECHVINEDLVCDELE   72 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~i~   72 (176)
                      ..++.+|.|+|+|||||||+|+.|++.++       ..+++.|++.....      .....+.   ...++.+.+.+.+.
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~---Pes~D~~~l~~~L~  159 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF---PESYDMRALLRFLS  159 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCC---cccccHHHHHHHHH
Confidence            45678899999999999999999988653       34677777653221      1111110   11234455666665


Q ss_pred             HHhhcCC-e--------------------------EEcCCCCCCCC--------CCcccEEEEEeCChHHHHHHHhhcC
Q 030477           73 DIMEQGG-N--------------------------IVDYHGCDFFP--------ERWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        73 ~~~~~~~-~--------------------------vid~~~~~~~~--------~~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      .+..+.. +                          |+++...-..+        ...+|+.||++++.+++.+|+.+|.
T Consensus       160 ~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~  238 (311)
T PRK05439        160 DVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERF  238 (311)
T ss_pred             HHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHH
Confidence            5443322 1                          11221100011        2246789999999999888776653

>PRK07429 phosphoribulokinase; Provisional

Probab=99.07  E-value=2.3e-09  Score=82.31  Aligned_cols=39  Identities=26%  Similarity=0.226  Sum_probs=33.0

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC---CeEeehhHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGELV   44 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~~~~~~   44 (176)
                      ..++.+|.|+|++||||||+++.|++.++   ..+++.|++.
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            45677999999999999999999999886   5677888764

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.05  E-value=6.5e-10  Score=80.40  Aligned_cols=103  Identities=30%  Similarity=0.465  Sum_probs=75.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh----hc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM----EQ   77 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~   77 (176)
                      ++...++.|+||+||+|++..|++.+++++++++++++..... ...+.....+     +...+.+...+...+    ..
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            4678899999999999999999999999999999999886442 2233222222     123344454554433    34


Q ss_pred             CCeEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhc
Q 030477           78 GGNIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKR  115 (176)
Q Consensus        78 ~~~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r  115 (176)
                      .++++|     .+|+.            ..+.||.|.+|.+.+.+|+..|
T Consensus        94 ~~~ild-----g~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r  138 (235)
T KOG3078|consen   94 KGFILD-----GFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGR  138 (235)
T ss_pred             cccccC-----CCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcc
Confidence            678998     44442            4678999999999999999988

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.05  E-value=2.2e-09  Score=75.87  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREK   47 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~   47 (176)
                      +|.|+|+|||||||+|+.|++.+     +..+++.|++....
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~   42 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR   42 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence            58899999999999999999986     45788999988643

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.03  E-value=1.5e-09  Score=81.82  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=29.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIGELV   44 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~~   44 (176)
                      +.++.+|.|.|++||||||+++.|...+.       +.+++.|.+.
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            35678888999999999999998866552       3456666543

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.01  E-value=2.5e-09  Score=78.46  Aligned_cols=27  Identities=30%  Similarity=0.482  Sum_probs=24.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|.|.|++||||||+++.|+..+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l   57 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALL   57 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            457799999999999999999999876

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.01  E-value=1.9e-09  Score=78.56  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=27.6

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQ-------LRHINIGELV   44 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~~   44 (176)
                      +|.|.|++||||||+++.|+..+.       +.+++.|++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            478999999999999999998873       3456777664

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.01  E-value=2.1e-09  Score=82.62  Aligned_cols=106  Identities=14%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcC------CeEeehhHHHhhcccCCCchhhhccccc-chHHHHHHHHHHh--hcCCeE
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQ------LRHINIGELVREKNLHDGWDDELECHVI-NEDLVCDELEDIM--EQGGNI   81 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~--~~~~~v   81 (176)
                      +++|+|+|||||||+++.|++.++      +.+++.|+++.........+......+. -.+.+.+.++..+  .++|..
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~   80 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE   80 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            478999999999999999998774      3488999988543221111111111110 1145555555533  335555


Q ss_pred             EcCCC---CCCCCC-----CcccEEEEEeCChHHHHHHHhhcC
Q 030477           82 VDYHG---CDFFPE-----RWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        82 id~~~---~~~~~~-----~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      +..+.   ...+++     ...+++|||++++++...|+..+.
T Consensus        81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~  123 (340)
T TIGR03575        81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPA  123 (340)
T ss_pred             ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHH
Confidence            53210   011111     124578999999999999998544

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PLN02772 guanylate kinase

Probab=98.95  E-value=8.5e-09  Score=80.14  Aligned_cols=151  Identities=17%  Similarity=0.202  Sum_probs=76.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccch----------------------
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINE----------------------   64 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------   64 (176)
                      +.+.|+|+||+|+|||||.+.|.+.+.. ..+......|.+...+.-+.++  ++.+.                      
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY--~Fvs~eeFe~~i~~g~FlE~~e~~Gn~  211 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHY--HFTERSVMEKEIKDGKFLEFASVHGNL  211 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceE--eeCCHHHHHHHHHhCccceeeeecCcc
Confidence            5579999999999999999999887632 2234444555554433322211  22221                      


Q ss_pred             -HHHHHHHHHHhhc-CCeEEcC--CCCCCCCCCc-ccEEEEE-eCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477           65 -DLVCDELEDIMEQ-GGNIVDY--HGCDFFPERW-FDRVVVL-QTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA  138 (176)
Q Consensus        65 -~~l~~~i~~~~~~-~~~vid~--~~~~~~~~~~-~~~vi~l-~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  138 (176)
                       ..-.+.++..+.. ..+|+|.  .....+.... ...+||+ ..+.+++.+|+..|+...+   +.+ ..++.....+.
T Consensus       212 YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGtese---E~I-~kRL~~A~~Ei  287 (398)
T PLN02772        212 YGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETE---EQI-QKRLRNAEAEL  287 (398)
T ss_pred             ccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCH---HHH-HHHHHHHHHHH
Confidence             1233334444433 3455542  1111111110 1233444 5568999999998875321   111 12444433322


Q ss_pred             Hh-cCCC--CcEEEecCCCHHHHHHHHHHHH
Q 030477          139 KE-SYPE--DIVLALKSDTIEDITRNIAILT  166 (176)
Q Consensus       139 ~~-~~~~--~~~i~~~~~s~~ev~~~i~~~~  166 (176)
                      .. .+..  +.+ .+| .+.++..+++..++
T Consensus       288 ~~~~~~~~fD~v-IvN-DdLe~A~~~L~~iL  316 (398)
T PLN02772        288 EQGKSSGIFDHI-LYN-DNLEECYKNLKKLL  316 (398)
T ss_pred             hhccccCCCCEE-EEC-CCHHHHHHHHHHHH
Confidence            21 1212  333 333 36777777776665

>COG4639 Predicted kinase [General function prediction only]

Probab=98.95  E-value=2e-08  Score=68.01  Aligned_cols=104  Identities=16%  Similarity=0.143  Sum_probs=65.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchh-hhccc-ccchHHHHHHHHHHhhc-CCeEEcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDD-ELECH-VINEDLVCDELEDIMEQ-GGNIVDYH   85 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~i~~~~~~-~~~vid~~   85 (176)
                      ..++++.|+|||||||.++...  ....+++++++-.....  ..++ ..... ....+.+.+.++..+.. .-.|+|++
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~--~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAt   77 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGV--SASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDAT   77 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhh--chhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence            3588999999999999999863  46788999998665431  1111 11100 00124455555655544 45688876


Q ss_pred             CCCCCCC----------CcccEEEEEeCChHHHHHHHhhcC
Q 030477           86 GCDFFPE----------RWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        86 ~~~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      ....-.+          .....+|+++.|...+.+|...|.
T Consensus        78 n~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~  118 (168)
T COG4639          78 NLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE  118 (168)
T ss_pred             cCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc
Confidence            5322111          134567999999999999987443

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.5e-09  Score=87.95  Aligned_cols=112  Identities=17%  Similarity=0.249  Sum_probs=68.9

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh--hHHHhhcc---------cCCCchhhhcccc-cch------
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI--GELVREKN---------LHDGWDDELECHV-INE------   64 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~-~~~------   64 (176)
                      ..++.+++.|++.|||||||||+|++||...+..|++.  .+++....         .|+........++ +++      
T Consensus       462 r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~  541 (693)
T KOG0730|consen  462 RFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAG  541 (693)
T ss_pred             HhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhh
Confidence            35678999999999999999999999999998888765  22221110         1110001111111 121      


Q ss_pred             --------------HHHHHHHHHHhhcCCeEE-cC------CCCCCCCCCcccEEEEEeCChHHHHHHHhh
Q 030477           65 --------------DLVCDELEDIMEQGGNIV-DY------HGCDFFPERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        65 --------------~~l~~~i~~~~~~~~~vi-d~------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                                    .+++..|..+...+++++ -.      -+.++++..++|.+||+..|..+.+.++.+
T Consensus       542 ~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk  612 (693)
T KOG0730|consen  542 SRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILK  612 (693)
T ss_pred             ccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHH
Confidence                          233344443444455544 22      334566666789999999998887777754

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.90  E-value=3.9e-09  Score=75.78  Aligned_cols=110  Identities=15%  Similarity=0.153  Sum_probs=57.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehhHHHhhcccCCCchhhhcccc--c---chHHHHHHH-HHHh-h
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHINIGELVREKNLHDGWDDELECHV--I---NEDLVCDEL-EDIM-E   76 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~i-~~~~-~   76 (176)
                      .+|.++++.|+|||||||++..+...+   ++.+++.|++......+...........  .   ....+...+ +..+ .
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~   92 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN   92 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            578899999999999999999998886   6788998887544332221111100000  0   011223322 2223 3


Q ss_pred             cCCeEEcCCCCC---------CCCCC-cccEEEEEeCChHHHHHHHhhcC
Q 030477           77 QGGNIVDYHGCD---------FFPER-WFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        77 ~~~~vid~~~~~---------~~~~~-~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      +.++++|.....         .+... ..-.++++.+|++....|...|-
T Consensus        93 ~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~  142 (199)
T PF06414_consen   93 RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY  142 (199)
T ss_dssp             T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred             CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence            457888854321         11111 22357888999999999998773

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.90  E-value=5.6e-08  Score=73.36  Aligned_cols=37  Identities=27%  Similarity=0.418  Sum_probs=31.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCe-EeehhHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLR-HINIGEL   43 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~-~~~~~~~   43 (176)
                      .+|.+|+|+|++||||||+|..||+++|.. +++.|.+
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~  127 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSI  127 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHH
Confidence            356789999999999999999999999997 5665444

>PRK15453 phosphoribulokinase; Provisional

Probab=98.89  E-value=2.3e-08  Score=74.60  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=33.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVR   45 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~   45 (176)
                      +.++++|+|+|.|||||||+++.|++.++     ..+++.|++.+
T Consensus         2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            45789999999999999999999998663     56788887765

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=8.1e-09  Score=83.37  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=35.1

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIG   41 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~   41 (176)
                      +.+..+++.++|+||||||||.+|+++|.++|.+|++..
T Consensus       217 ~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is  255 (802)
T KOG0733|consen  217 SLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS  255 (802)
T ss_pred             hcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence            456778999999999999999999999999999998654

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=1.6e-08  Score=76.18  Aligned_cols=30  Identities=43%  Similarity=0.617  Sum_probs=27.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      .-.++|+++||||+|||++|++||+++...
T Consensus       175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR  204 (423)
T KOG0744|consen  175 TWNRLILLHGPPGTGKTSLCKALAQKLSIR  204 (423)
T ss_pred             eeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence            457899999999999999999999999655

>PHA03132 thymidine kinase; Provisional

Probab=98.84  E-value=2.5e-08  Score=81.16  Aligned_cols=30  Identities=20%  Similarity=0.180  Sum_probs=26.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      ..+|+|.|+.||||||+++.|++.+|..++
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi  286 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVL  286 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence            689999999999999999999998855544

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.84  E-value=2.8e-08  Score=74.66  Aligned_cols=34  Identities=26%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc---CCeEeehhHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAEST---QLRHINIGELV   44 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~~~   44 (176)
                      +|.|+|++||||||+++.|+..+   +..+++.|++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            47899999999999999998876   55678878764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.2e-08  Score=77.65  Aligned_cols=111  Identities=21%  Similarity=0.294  Sum_probs=69.5

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh--hHHHhhcc---------cCCCchhhhccccc-ch------
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI--GELVREKN---------LHDGWDDELECHVI-NE------   64 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~-~~------   64 (176)
                      +.++.+|+-|+|.||||+|||.+|++.|...++.|+..  +++++...         +|.-..+...++++ ++      
T Consensus       179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~  258 (406)
T COG1222         179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGA  258 (406)
T ss_pred             HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhc
Confidence            46778999999999999999999999999999988743  55544431         11111122222222 22      


Q ss_pred             --------------HHHHHHHHHH---hhcCCe-EE------cCCCCCCCCCCcccEEEEEeCChHHHHHHHh
Q 030477           65 --------------DLVCDELEDI---MEQGGN-IV------DYHGCDFFPERWFDRVVVLQTENSVLYDRLT  113 (176)
Q Consensus        65 --------------~~l~~~i~~~---~~~~~~-vi------d~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~  113 (176)
                                    ..+++++.++   -..+++ ||      |.-+.++++...+|..|-+..|...-+..+.
T Consensus       259 kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il  331 (406)
T COG1222         259 KRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEIL  331 (406)
T ss_pred             ccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHH
Confidence                          1344444432   233443 33      3344567777788888888877776666654

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.80  E-value=2.4e-08  Score=67.27  Aligned_cols=101  Identities=19%  Similarity=0.173  Sum_probs=56.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhhcccCCCchh-hhcccccchHHHHHHHHHHhhcCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVREKNLHDGWDD-ELECHVINEDLVCDELEDIMEQGGN   80 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~   80 (176)
                      +++..||++|.+||||||+|=+|.+.|   |..  .++-|.+....+..-.|.. +....+.    -...+.++++..++
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIR----RigeVaKLFADag~  104 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIR----RIGEVAKLFADAGV  104 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHH----HHHHHHHHHhccce
Confidence            578899999999999999999998876   332  2343333222221111211 1111111    12234445566665


Q ss_pred             EEcCCC-----------CCCCCCCcccEEEEEeCChHHHHHHH
Q 030477           81 IVDYHG-----------CDFFPERWFDRVVVLQTENSVLYDRL  112 (176)
Q Consensus        81 vid~~~-----------~~~~~~~~~~~vi~l~~~~~~~~~R~  112 (176)
                      |.-...           .++++.. .-.-||.++|.+++.+|-
T Consensus       105 iciaSlISPYR~dRdacRel~~~~-~FiEvfmdvpl~vcE~RD  146 (207)
T KOG0635|consen  105 ICIASLISPYRKDRDACRELLPEG-DFIEVFMDVPLEVCEARD  146 (207)
T ss_pred             eeeehhcCchhccHHHHHHhccCC-CeEEEEecCcHHHhhccC
Confidence            442211           2334443 224589999999999874

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.4e-08  Score=84.42  Aligned_cols=111  Identities=20%  Similarity=0.243  Sum_probs=67.1

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh--HHHhhc---------ccCCCchhhhccccc----------
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIG--ELVREK---------NLHDGWDDELECHVI----------   62 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~----------   62 (176)
                      ++..-|+-++|+||||||||.||+++|.+.|+||++.+  +++.-.         .++.......+++++          
T Consensus       339 lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~  418 (774)
T KOG0731|consen  339 LGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRK  418 (774)
T ss_pred             cCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccccccc
Confidence            45567889999999999999999999999999998653  332211         001000001111110          


Q ss_pred             ------------chH---HHHHHHHHHhhcCCeEEc-------CCCCCCCCCCcccEEEEEeCChHHHHHHHhh
Q 030477           63 ------------NED---LVCDELEDIMEQGGNIVD-------YHGCDFFPERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        63 ------------~~~---~l~~~i~~~~~~~~~vid-------~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                                  .++   +++-.+.......++|+.       .-+.++++..++|..|+++.|...=+..+.+
T Consensus       419 r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~  492 (774)
T KOG0731|consen  419 RGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILK  492 (774)
T ss_pred             ccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHH
Confidence                        112   233333333444566663       2334566666789999999988776666654

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.75  E-value=1.1e-07  Score=70.13  Aligned_cols=106  Identities=19%  Similarity=0.281  Sum_probs=61.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehh------HHHhhccc--CCCchhhhcccccchHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIG------ELVREKNL--HDGWDDELECHVINEDLVCDEL   71 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~i   71 (176)
                      +.+.+|.|+|++|+||||+|+.|+..+.       +..+.+|      ..+.....  ..++.+     .|+...+++.+
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPe-----SyD~~~ll~fl  154 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPE-----SYDVAALLRFL  154 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCc-----cccHHHHHHHH
Confidence            4677899999999999999999987652       1122222      22222222  112222     23445555555


Q ss_pred             HHHhhcCC-e--------------------------EEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCC
Q 030477           72 EDIMEQGG-N--------------------------IVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        72 ~~~~~~~~-~--------------------------vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      ..+.++.. +                          |+++..      ...+--.++|+.||++++.+.+.+|+..|..
T Consensus       155 ~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl  233 (283)
T COG1072         155 SDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFL  233 (283)
T ss_pred             HHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHH
Confidence            54432221 1                          111100      0011112578999999999999999998854

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.73  E-value=7.3e-08  Score=68.07  Aligned_cols=105  Identities=13%  Similarity=0.219  Sum_probs=59.1

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--------CCCchhhhc--ccc---------------cchH
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--------HDGWDDELE--CHV---------------INED   65 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~--~~~---------------~~~~   65 (176)
                      +|.|.+..|||++++|+.||++||+++++- +++.....        ...+.+...  .++               ...+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            588999999999999999999999999996 66554421        111222111  110               0112


Q ss_pred             HHH----HHHHHHhhcCCeEEcCCCCCCCCCCcc-cEEEEEeCChHHHHHHHhhcC
Q 030477           66 LVC----DELEDIMEQGGNIVDYHGCDFFPERWF-DRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        66 ~l~----~~i~~~~~~~~~vid~~~~~~~~~~~~-~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      .+.    +.+.++...+++|+.......+.+..+ .+-|+|.+|.+.+.+|+.++.
T Consensus        80 ~~~~~~~~~i~~la~~~~~Vi~GR~a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~~  135 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCVIVGRCANYILRDIPNVLHVFIYAPLEFRVERIMERE  135 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EEEESTTHHHHTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEEecCHhhhhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence            222    344445556677776544444443333 467999999999999999873

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=98.72  E-value=1.3e-07  Score=67.59  Aligned_cols=38  Identities=32%  Similarity=0.374  Sum_probs=29.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE   46 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~   46 (176)
                      +.+++|.||+|+|||.+|-.||+++|+++++.|.+.-.
T Consensus         1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y   38 (233)
T PF01745_consen    1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY   38 (233)
T ss_dssp             -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence            46889999999999999999999999999998876433

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.71  E-value=1.7e-08  Score=67.26  Aligned_cols=28  Identities=50%  Similarity=0.708  Sum_probs=25.6

Q ss_pred             EEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477           12 ILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus        12 I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      |+|+||||+||||+++.+++.++.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~   28 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIE   28 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccc
Confidence            6899999999999999999999987754

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.1e-08  Score=81.46  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .-|+-|+|+||||+|||.+|+++|-+.|+|||.+
T Consensus       335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~  368 (752)
T KOG0734|consen  335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA  368 (752)
T ss_pred             cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence            3578999999999999999999999999999865

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.67  E-value=7.4e-07  Score=70.87  Aligned_cols=36  Identities=22%  Similarity=0.394  Sum_probs=31.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCe-EeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLR-HINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~-~~~~~~~   43 (176)
                      ++.+|+++|++||||||++..||..+|+. +++.|.+
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~i  290 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAV  290 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHH
Confidence            57899999999999999999999999997 4565554

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.67  E-value=2.1e-07  Score=69.02  Aligned_cols=35  Identities=29%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVR   45 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~   45 (176)
                      +|+|+|.+||||||+++.|++.++     ..+++.|++.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            589999999999999999998763     56788888776

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.65  E-value=3.8e-08  Score=58.52  Aligned_cols=23  Identities=43%  Similarity=0.625  Sum_probs=21.2

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +|+|+|+|||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999984

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.65  E-value=1.8e-07  Score=76.21  Aligned_cols=37  Identities=19%  Similarity=0.229  Sum_probs=30.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELV   44 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~   44 (176)
                      ...+|.|.|++||||||+++.|+..+ +...++.|++.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~  101 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN  101 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence            45688899999999999999999887 44577777763

>PLN02165 adenylate isopentenyltransferase

Probab=98.62  E-value=5.2e-08  Score=74.48  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=33.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      .++.+|+|.||+||||||++..||+.++..+++.|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            3567899999999999999999999999999998876

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=98.61  E-value=6.9e-07  Score=64.14  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=58.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCC-eEE
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGG-NIV   82 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~-~vi   82 (176)
                      |++|+|+|.|.|||||.|+.|.+.+   |  ..++-.++..-....-+.++...+.- .-...+...+.+.+..+. ||+
T Consensus         1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK-~lRg~L~S~v~R~Lsk~~iVI~   79 (281)
T KOG3062|consen    1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEK-ALRGKLRSAVDRSLSKGDIVIV   79 (281)
T ss_pred             CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHH-HHHHHHHHHHHhhcccCcEEEE
Confidence            5899999999999999999998877   2  12222222221100001111100000 001234444444555444 555


Q ss_pred             cC-CCCCCCCCC---------cccEEEEEeCChHHHHHHHhhcCCC
Q 030477           83 DY-HGCDFFPER---------WFDRVVVLQTENSVLYDRLTKRGYT  118 (176)
Q Consensus        83 d~-~~~~~~~~~---------~~~~vi~l~~~~~~~~~R~~~r~~~  118 (176)
                      |. ....+|+-.         -...|||..+|.+.+.+-...|...
T Consensus        80 DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p  125 (281)
T KOG3062|consen   80 DSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDP  125 (281)
T ss_pred             ecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCC
Confidence            74 333344321         1125788899999998887665443

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.60  E-value=5.1e-08  Score=74.27  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      .++++|+|+||+||||||+|..|+++++..+++.|.+
T Consensus         2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            3457999999999999999999999999999988873

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.7e-07  Score=75.90  Aligned_cols=36  Identities=28%  Similarity=0.492  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +...+..|+++||||||||.+|+++|.+.|+.|++.
T Consensus       541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV  576 (802)
T KOG0733|consen  541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV  576 (802)
T ss_pred             CCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence            445678999999999999999999999999888865

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=2.7e-06  Score=62.16  Aligned_cols=42  Identities=29%  Similarity=0.427  Sum_probs=33.9

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE   46 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~   46 (176)
                      .|+++.+|+|-|+||.||||+|..||.+||...+-..|.+++
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE  126 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE  126 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence            356788999999999999999999999999987544444443

>PRK09087 hypothetical protein; Validated

Probab=98.55  E-value=4.1e-07  Score=66.60  Aligned_cols=106  Identities=15%  Similarity=0.245  Sum_probs=61.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--CCCc--hhhhcccccchHHHHHHHHHHhhcC-CeEEc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--HDGW--DDELECHVINEDLVCDELEDIMEQG-GNIVD   83 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~-~~vid   83 (176)
                      .+.++|+|++||||||+++.+++..++.+++.+++......  ....  -++.+..-.+...+++.+......+ .+++.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilit  123 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMT  123 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence            46699999999999999999999999999987643332210  0000  0111111124466888888777644 45553


Q ss_pred             CCC----CCC-CCC----CcccEEEEEeCChHHHHHHHhh
Q 030477           84 YHG----CDF-FPE----RWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        84 ~~~----~~~-~~~----~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                      ...    ... .++    -....++-+..+.++.+..+.+
T Consensus       124 s~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~  163 (226)
T PRK09087        124 SRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF  163 (226)
T ss_pred             CCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence            321    111 111    1234677777776655444443

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.50  E-value=6.7e-07  Score=75.99  Aligned_cols=36  Identities=33%  Similarity=0.522  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +...+..|+|+||||||||++++++|..++++++..
T Consensus       483 g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v  518 (733)
T TIGR01243       483 GIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV  518 (733)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            445677899999999999999999999998887754

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.47  E-value=1.2e-06  Score=73.62  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=27.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      +....+|++.|.||+||||+++.|++.+++.+++
T Consensus       212 ~~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~  245 (664)
T PTZ00322        212 MMGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQ  245 (664)
T ss_pred             cccceeEEecccCCCChhHHHHHHHHHHHhcCCC
Confidence            3455689999999999999999999998655443

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.47  E-value=1.6e-07  Score=63.43  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +|+|+||+||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            478999999999999999999764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.46  E-value=1.9e-07  Score=67.47  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=24.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      ....++++||||+||||+|..+|+++|..+.
T Consensus        49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~   79 (233)
T PF05496_consen   49 ALDHMLFYGPPGLGKTTLARIIANELGVNFK   79 (233)
T ss_dssp             ---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred             CcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence            3568999999999999999999999987764

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PLN02840 tRNA dimethylallyltransferase

Probab=98.46  E-value=2e-07  Score=73.45  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=33.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ..++++|+|+||+||||||++..|+++++..+++.|.+
T Consensus        18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~   55 (421)
T PLN02840         18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV   55 (421)
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence            34667899999999999999999999999888887763

>PRK06893 DNA replication initiation factor; Validated

Probab=98.45  E-value=6.1e-07  Score=65.85  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=28.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGE   42 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~   42 (176)
                      ..+.++|+||||+|||+++++++..+     +..|++..+
T Consensus        38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~   77 (229)
T PRK06893         38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK   77 (229)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence            34678999999999999999999875     566777653

>CHL00176 ftsH cell division protein; Validated

Probab=98.43  E-value=6.2e-07  Score=74.61  Aligned_cols=36  Identities=31%  Similarity=0.547  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +...++.++|.||||+|||++++++|.+++.+++..
T Consensus       212 g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i  247 (638)
T CHL00176        212 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI  247 (638)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            344577899999999999999999999999888754

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.43  E-value=2.7e-07  Score=72.51  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=31.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      .+..|+|.||||+||||+++.|++.++++++..+.
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            35789999999999999999999999999988774

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK06761 hypothetical protein; Provisional

Probab=98.42  E-value=2.4e-07  Score=69.56  Aligned_cols=33  Identities=30%  Similarity=0.487  Sum_probs=27.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIG   41 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~   41 (176)
                      .++|+|+|+|||||||+++.|+++++...++.+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~   35 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE   35 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence            468999999999999999999999875444433

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.42  E-value=4.2e-06  Score=60.85  Aligned_cols=41  Identities=22%  Similarity=0.416  Sum_probs=32.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhcc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREKN   48 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~~   48 (176)
                      .+-+|++.|.||.|||++|+.|+..|     ...+|+.+++-|...
T Consensus        11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~   56 (222)
T PF01591_consen   11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLS   56 (222)
T ss_dssp             --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccc
Confidence            34577889999999999999999876     346799999877654

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=6.9e-07  Score=74.16  Aligned_cols=37  Identities=38%  Similarity=0.619  Sum_probs=33.0

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .++.|.-.|++.||||+|||-+|+++|-++...|++.
T Consensus       700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSV  736 (953)
T KOG0736|consen  700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSV  736 (953)
T ss_pred             ccccccceeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence            4566778999999999999999999999999988875

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.41  E-value=3.1e-07  Score=74.12  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=32.5

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|.||||||||++|+++|..+|.+++..
T Consensus       254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l  290 (489)
T CHL00195        254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL  290 (489)
T ss_pred             cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            3456788999999999999999999999999888754

>PRK09169 hypothetical protein; Validated

Probab=98.39  E-value=2.5e-06  Score=77.60  Aligned_cols=134  Identities=8%  Similarity=-0.045  Sum_probs=77.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC---CCchhhhcccccchHHHHHHHHHHhhcCCeEEcC-
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH---DGWDDELECHVINEDLVCDELEDIMEQGGNIVDY-   84 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~-   84 (176)
                      ...|+|.|++|+||||+++.|+.++++.+++.|..+......   ..+....  ++.  +.-...+++.+. ..+||.. 
T Consensus      2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG--~FR--e~Eaa~V~Dllr-~~vVLSTG 2184 (2316)
T PRK09169       2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG--LSP--EQAAARVRDALR-WEVVLPAE 2184 (2316)
T ss_pred             hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC--chH--HHHHHHHHHHhc-CCeEEeCC
Confidence            457899999999999999999999999999998877654321   1111111  222  122223333222 2333321 


Q ss_pred             -------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccc-hh-------HHHHHHHHHHHHHhcCCC--CcE
Q 030477           85 -------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN-NI-------ECEIFQVLLEEAKESYPE--DIV  147 (176)
Q Consensus        85 -------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~--~~~  147 (176)
                             .....+..  .+++||+..+.+++.+|+... ...+.... +.       ..+.+. .++.+.+.|..  +..
T Consensus      2185 GGav~~~enr~~L~~--~GlvV~L~an~~tl~~Rty~g-~NRPLL~~~~~~FEiQFHT~esl~-Lk~eRhpLYEqvADl~ 2260 (2316)
T PRK09169       2185 GFGAAVEQARQALGA--KGLRVMRINNGFAAPDTTYAG-LNVNLRTAAGLDFEIQFHTADSLR-TKNKTHKLYEKLQDLE 2260 (2316)
T ss_pred             CCcccCHHHHHHHHH--CCEEEEEECCHHHHHHHhccC-CCCccccCCCCccchhccHHHHHH-HHHHhHHHHHHhcCcc
Confidence                   11222222  457999999999999999643 22333222 11       123333 55667777765  344


Q ss_pred             EEec
Q 030477          148 LALK  151 (176)
Q Consensus       148 i~~~  151 (176)
                      +.+.
T Consensus      2261 V~~~ 2264 (2316)
T PRK09169       2261 VAPA 2264 (2316)
T ss_pred             cccC
Confidence            4443

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.39  E-value=3.8e-07  Score=70.47  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHH
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI--NIGEL   43 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~   43 (176)
                      +...+..++|.||||||||.+|++++.++|+.++  +.+++
T Consensus       144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL  184 (413)
T PLN00020        144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGEL  184 (413)
T ss_pred             CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHh
Confidence            4567788889999999999999999999998876  44444

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.38  E-value=1.3e-06  Score=70.66  Aligned_cols=33  Identities=33%  Similarity=0.485  Sum_probs=28.2

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      .+...++.|+|+||||||||+++++++..++..
T Consensus       211 ~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       211 YDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             ccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            345677889999999999999999999988543

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.36  E-value=7.4e-06  Score=59.13  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=33.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccC
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLH   50 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~   50 (176)
                      ++.-+-|+|+||+|+||+|+.+.|-++++. ..++.+.-.+.+...
T Consensus        34 p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~   79 (231)
T KOG0707|consen   34 PGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAG   79 (231)
T ss_pred             CCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcc
Confidence            344578999999999999999999999974 445555555555433

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.36  E-value=4.5e-07  Score=60.41  Aligned_cols=28  Identities=43%  Similarity=0.573  Sum_probs=24.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      +..++|+|||||||||+++.|+..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            5689999999999999999999988543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=98.36  E-value=2.2e-06  Score=60.58  Aligned_cols=39  Identities=18%  Similarity=0.207  Sum_probs=32.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVR   45 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~   45 (176)
                      +|.-+|.|.|.+.|||||||+.|.+.+ |+..|+-||+..
T Consensus         2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK   41 (225)
T KOG3308|consen    2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK   41 (225)
T ss_pred             ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence            355688899999999999999998877 677888887654

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.35  E-value=3.9e-07  Score=71.94  Aligned_cols=36  Identities=33%  Similarity=0.460  Sum_probs=30.8

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .+...++.|+|+||||||||++|++++..++.+++.
T Consensus       160 ~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~  195 (389)
T PRK03992        160 VGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR  195 (389)
T ss_pred             cCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE
Confidence            345677889999999999999999999999877653

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=98.34  E-value=1.2e-05  Score=56.58  Aligned_cols=43  Identities=21%  Similarity=0.213  Sum_probs=29.2

Q ss_pred             ccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH
Q 030477           95 FDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE  137 (176)
Q Consensus        95 ~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  137 (176)
                      .|.+|||.++|+++.+|+..|.++.+..-.-...+.+....+.
T Consensus       154 ~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~  196 (244)
T KOG4235|consen  154 LDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHES  196 (244)
T ss_pred             cceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHH
Confidence            5789999999999999999998755543322223334444333

>COG3911 Predicted ATPase [General function prediction only]

Probab=98.34  E-value=5.8e-07  Score=60.53  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=30.4

Q ss_pred             CCccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            1 MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         1 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      |+..+++++++++|+|.||+||||+..+|+. -|+..+
T Consensus         1 ~~~~~~nR~~~fIltGgpGaGKTtLL~aLa~-~Gfatv   37 (183)
T COG3911           1 VRVRPFNRHKRFILTGGPGAGKTTLLAALAR-AGFATV   37 (183)
T ss_pred             CcccccccceEEEEeCCCCCcHHHHHHHHHH-cCceee
Confidence            4566677888999999999999999999976 466543

>PRK06620 hypothetical protein; Validated

Probab=98.34  E-value=1.6e-06  Score=63.02  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      +.++|+||+|||||++++++++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            568999999999999999999988876655

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=98.34  E-value=7.8e-07  Score=64.26  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=30.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeE-eehhHHHhhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRH-INIGELVREK   47 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~-~~~~~~~~~~   47 (176)
                      ++|.|+|.|||||||+++.+.+ .|.++ +++.+.++..
T Consensus         1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~   38 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEI   38 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHH
Confidence            4799999999999999999955 57777 8888876654

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=98.33  E-value=4.1e-07  Score=63.17  Aligned_cols=33  Identities=45%  Similarity=0.581  Sum_probs=23.3

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE   46 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~   46 (176)
                      .|+|+|++||||||+++.|++. |++++  .+..+.
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~   33 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE   33 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence            4899999999999999999987 98887  444433

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.33  E-value=5.5e-07  Score=69.55  Aligned_cols=28  Identities=18%  Similarity=0.312  Sum_probs=25.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      +.++++|+|||||||||+++.|+..++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            5688999999999999999999998854

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.33  E-value=5.7e-07  Score=61.43  Aligned_cols=26  Identities=42%  Similarity=0.603  Sum_probs=23.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..|+|+|+||+||||+++.+++.+
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L   29 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKL   29 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHH
Confidence            45789999999999999999999887

>PLN02748 tRNA dimethylallyltransferase

Probab=98.33  E-value=7e-07  Score=71.46  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=33.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      +++++|+|+||+||||||++..||+.++..+++.|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            466799999999999999999999999999999885

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.32  E-value=5.6e-07  Score=70.78  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=31.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      +..|+|+||||+||||+|+.|++.++++|+..|.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            5789999999999999999999999999887764

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.31  E-value=7.7e-07  Score=70.26  Aligned_cols=37  Identities=32%  Similarity=0.455  Sum_probs=31.9

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|.||||||||+++++++..++..++..
T Consensus       174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             cCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            3456788999999999999999999999998877643

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=98.31  E-value=5e-05  Score=51.89  Aligned_cols=155  Identities=12%  Similarity=0.076  Sum_probs=79.5

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHHHhhcccC-----CCch------hhhcccc-cchHHHHH
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI--NIGELVREKNLH-----DGWD------DELECHV-INEDLVCD   69 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~~~~~~~~-----~~~~------~~~~~~~-~~~~~l~~   69 (176)
                      ++|.+.++|+|-|.+.+|||++|.++-+-+..++.  -.|.+.......     ..+.      .+....+ +....+.+
T Consensus        18 ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e   97 (205)
T COG3896          18 AGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILE   97 (205)
T ss_pred             cCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHH
Confidence            56788999999999999999999999776655544  444443322111     0100      0111111 11111111


Q ss_pred             --------HHHHHhh-cCCeEEcCCC--CCCCCC------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477           70 --------ELEDIME-QGGNIVDYHG--CDFFPE------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ  132 (176)
Q Consensus        70 --------~i~~~~~-~~~~vid~~~--~~~~~~------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~  132 (176)
                              .|+.... +.+++.|.-.  ...++.      ...-..|=+.||.+++.+|-..|+...+-... .      
T Consensus        98 ~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG~~r-g------  170 (205)
T COG3896          98 LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPGWNR-G------  170 (205)
T ss_pred             HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcchhh-h------
Confidence                    1222222 2345665321  112222      12224677789999999998876543332211 1      


Q ss_pred             HHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHH
Q 030477          133 VLLEEAKESYPEDIVLALKSDTIEDITRNIAILT  166 (176)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~  166 (176)
                       ..+.....-.-+.-++++..+|.|.+..|.+-+
T Consensus       171 -~~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~  203 (205)
T COG3896         171 -SARAVHADAEYDLEVDTSATTPHECAREIHERY  203 (205)
T ss_pred             -hHHHhcCCcceeeeecccCCCHHHHHHHHHHHh
Confidence             111111111114456666679999888877644

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.30  E-value=7.2e-07  Score=60.23  Aligned_cols=27  Identities=44%  Similarity=0.588  Sum_probs=25.0

Q ss_pred             EEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477           12 ILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus        12 I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      |+|.|+||+|||++++.|++.++.+++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~   28 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVI   28 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence            789999999999999999999988774

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.30  E-value=1.8e-06  Score=63.56  Aligned_cols=36  Identities=11%  Similarity=0.151  Sum_probs=28.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~   43 (176)
                      ..+.++|+||+|||||+++++++..+.     +.|++.++.
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~   84 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR   84 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence            346899999999999999999988763     456776653

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.3e-05  Score=60.71  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=33.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      |-++|+|+|+.|||||-|+--||.+++..+|+.|.+
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm   41 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM   41 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence            678999999999999999999999999999987754

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.30  E-value=7.4e-07  Score=67.19  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      +|+|+||+|||||+++..|++.++..+++.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence            489999999999999999999999999998874

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.28  E-value=1.1e-06  Score=58.73  Aligned_cols=30  Identities=27%  Similarity=0.381  Sum_probs=27.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      .++.+|+|.|+.||||||+++.+++.+|..
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            456799999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=6.4e-06  Score=63.81  Aligned_cols=36  Identities=33%  Similarity=0.542  Sum_probs=32.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      .+.+-|++.||||+|||.||+++|.+.|..||+.+.
T Consensus       243 rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs  278 (491)
T KOG0738|consen  243 RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS  278 (491)
T ss_pred             cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence            466889999999999999999999999999987554

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=1.4e-06  Score=71.26  Aligned_cols=35  Identities=31%  Similarity=0.524  Sum_probs=31.0

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ..=|+.+++.||||+|||.+|++.|-+.+.||++.
T Consensus       180 akiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i  214 (596)
T COG0465         180 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  214 (596)
T ss_pred             cccccceeEecCCCCCcHHHHHHHhcccCCCceec
Confidence            34478899999999999999999999999998755

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.26  E-value=1.1e-06  Score=71.62  Aligned_cols=36  Identities=31%  Similarity=0.513  Sum_probs=31.2

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +...++.++|+||||||||+++++|+..++.+++..
T Consensus        84 g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i  119 (495)
T TIGR01241        84 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  119 (495)
T ss_pred             CCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence            345667899999999999999999999999888754

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.25  E-value=1.4e-06  Score=68.24  Aligned_cols=36  Identities=33%  Similarity=0.516  Sum_probs=30.6

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +...++.++|+||||||||+++++++..++..++..
T Consensus       152 g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       152 GIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence            345677899999999999999999999998877643

Many proteins may score above the trusted cutoff because an internal

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.24  E-value=1.4e-06  Score=61.05  Aligned_cols=27  Identities=37%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      ++|+|+|+|||||||+|..|+.+++.+
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~   28 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQ   28 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence            479999999999999999999987643

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=6.6e-06  Score=68.08  Aligned_cols=38  Identities=39%  Similarity=0.629  Sum_probs=33.6

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +.+.+....|++.||||||||.++.+++...+..|++.
T Consensus       695 ~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv  732 (952)
T KOG0735|consen  695 NCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV  732 (952)
T ss_pred             hCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe
Confidence            34566778999999999999999999999999999875

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=5.6e-06  Score=62.18  Aligned_cols=39  Identities=31%  Similarity=0.522  Sum_probs=31.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh--hHHHhh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI--GELVRE   46 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~--~~~~~~   46 (176)
                      +.+-|+|.||||+|||.||+++|-+.+-.||+.  +|++..
T Consensus       165 PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK  205 (439)
T KOG0739|consen  165 PWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK  205 (439)
T ss_pred             cceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence            457899999999999999999999998777644  555443

>PF13173 AAA_14: AAA domain

Probab=98.22  E-value=1.9e-06  Score=57.47  Aligned_cols=36  Identities=36%  Similarity=0.436  Sum_probs=29.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC----CeEeehhHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ----LRHINIGELV   44 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~----~~~~~~~~~~   44 (176)
                      .++++|+||.|+||||+++.+++++.    +.+++.++..
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~   41 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR   41 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence            57899999999999999999998864    5666666543

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=2e-06  Score=65.14  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ++++|+|+||.|||||-+|-.||+++|..+++.|.+
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            578999999999999999999999999999998875

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.21  E-value=1.3e-06  Score=66.84  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=28.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      ..+.|+|.|+||+||||+++.||+.+|++++
T Consensus        63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             cCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            3567999999999999999999999998886

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.21  E-value=1.9e-06  Score=68.75  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=30.8

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .+...+..++|+||||||||+++++++..++..++.
T Consensus       212 ~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~  247 (438)
T PTZ00361        212 IGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR  247 (438)
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence            345677889999999999999999999999877764

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.20  E-value=1.5e-06  Score=67.34  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=30.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      +....++.||||+||||+|+.||..+++.|.-.+.
T Consensus        47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA   81 (436)
T COG2256          47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA   81 (436)
T ss_pred             CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence            45678999999999999999999999988875543

>PRK05642 DNA replication initiation factor; Validated

Probab=98.20  E-value=6.6e-06  Score=60.58  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=29.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVR   45 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~   45 (176)
                      ..++|+|++|+|||+++++++..+     .+.|++.+++..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~   86 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD   86 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence            578999999999999999997543     566788877654

>PHA03136 thymidine kinase; Provisional

Probab=98.20  E-value=7.4e-06  Score=63.52  Aligned_cols=27  Identities=19%  Similarity=0.366  Sum_probs=24.5

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCc
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGA  120 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~  120 (176)
                      .+|.+|||+++++++.+|+.+|+++.+
T Consensus       191 ~pD~IIyL~l~~e~~~~RI~kRgR~~E  217 (378)
T PHA03136        191 HGGNIVIMDLDECEHAERIIARGRPGE  217 (378)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence            367899999999999999999998766

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.19  E-value=2.2e-06  Score=57.51  Aligned_cols=26  Identities=46%  Similarity=0.700  Sum_probs=23.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....++|+|+||+||||+++.+++.+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.18  E-value=2e-06  Score=64.36  Aligned_cols=31  Identities=29%  Similarity=0.347  Sum_probs=27.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      .+..|+|.|+||+|||++|+.|++.+|.+++
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            4567889999999999999999999988776

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.17  E-value=2.4e-06  Score=69.49  Aligned_cols=31  Identities=35%  Similarity=0.476  Sum_probs=27.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      +.++++|+||+||||||..+.||+++|+.+.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            4568899999999999999999999988665

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=98.16  E-value=2.1e-06  Score=68.06  Aligned_cols=33  Identities=30%  Similarity=0.440  Sum_probs=29.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIG   41 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~   41 (176)
                      ...|+|.||||||||++|+.|++.++.+++..+
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id  140 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD  140 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence            467999999999999999999999998887544

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.6e-06  Score=66.53  Aligned_cols=35  Identities=40%  Similarity=0.603  Sum_probs=31.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +.+++.|++.||||+|||.+|+++|++.|..|++.
T Consensus       124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv  158 (386)
T KOG0737|consen  124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV  158 (386)
T ss_pred             ccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence            35778999999999999999999999999988764

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=98.15  E-value=3.3e-06  Score=64.11  Aligned_cols=37  Identities=14%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      |..+++|+|+||.|||||.+|-.||++ +..++++|..
T Consensus         1 ~~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~   37 (300)
T PRK14729          1 MKENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI   37 (300)
T ss_pred             CCCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence            445679999999999999999999999 5588988864

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.15  E-value=6.1e-05  Score=51.88  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=29.2

Q ss_pred             EEEECCCCCChHHHHHHHHHhcC-CeEeehhHHHh
Q 030477           12 ILVTGTPGTGKTTTSTALAESTQ-LRHINIGELVR   45 (176)
Q Consensus        12 I~l~G~~GsGKSTla~~La~~l~-~~~~~~~~~~~   45 (176)
                      |+=.+.+||||||++.+|+.-+| +.++..|++..
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~   36 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITG   36 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCC
Confidence            44578999999999999999999 99998888744

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.15  E-value=2.3e-06  Score=64.04  Aligned_cols=26  Identities=35%  Similarity=0.548  Sum_probs=23.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....++|+|||||||||+|+.+++.+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999864

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=98.14  E-value=1.7e-05  Score=61.53  Aligned_cols=109  Identities=19%  Similarity=0.260  Sum_probs=68.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYH   85 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~   85 (176)
                      .+..++++.|+.|||||++...|.+ .|..++|+......... +...+..-.....-++.+...+...-....++++.+
T Consensus       139 ~~~~~ivl~G~TGsGKT~iL~~L~~-~~~~vlDlE~~aehrGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~E  217 (345)
T PRK11784        139 AQFPLVVLGGNTGSGKTELLQALAN-AGAQVLDLEGLANHRGSSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDE  217 (345)
T ss_pred             ccCceEecCCCCcccHHHHHHHHHh-cCCeEEECCchhhhccccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEec
Confidence            3456788999999999999999965 48889998887766532 111111111111112445555544334456777655


Q ss_pred             CCC----CCCCC-----cccEEEEEeCChHHHHHHHhhcCC
Q 030477           86 GCD----FFPER-----WFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        86 ~~~----~~~~~-----~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      +..    .+|..     ....+|++++|.+.+.+|+.+ .|
T Consensus       218 s~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~l~~-~Y  257 (345)
T PRK11784        218 SRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVERLLE-DY  257 (345)
T ss_pred             cccccCccCCHHHHHHHhhCCEEEEECCHHHHHHHHHH-Hh
Confidence            432    23321     233589999999999999974 44

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=98.14  E-value=1e-05  Score=58.59  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=23.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ...++.+.|+|||||||++.+++...+
T Consensus       118 ~~~l~glag~pGtgkst~~a~v~~aWp  144 (323)
T KOG2702|consen  118 NEELTGLAGRPGTGKSTRIAAVDNAWP  144 (323)
T ss_pred             chheeeeecCCCCcchhHHHHHHhhcc
Confidence            457899999999999999999988653

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.12  E-value=2.6e-06  Score=76.99  Aligned_cols=41  Identities=24%  Similarity=0.337  Sum_probs=34.6

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHHH
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI--NIGELV   44 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~~   44 (176)
                      .+...++.|+|.||||||||.+|++||.+.+++++  +.++++
T Consensus      1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl 1667 (2281)
T CHL00206       1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFL 1667 (2281)
T ss_pred             cCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHh
Confidence            34567889999999999999999999999999886  445555

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.12  E-value=3.1e-06  Score=59.18  Aligned_cols=27  Identities=30%  Similarity=0.323  Sum_probs=23.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++++.|+|++||||||+++.|...+
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHH
Confidence            456799999999999999999998776

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.11  E-value=2.9e-06  Score=59.29  Aligned_cols=23  Identities=43%  Similarity=0.700  Sum_probs=20.6

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .|+|||+||+||||+.+.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            48999999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF13245 AAA_19: Part of AAA domain

Probab=98.10  E-value=4.1e-06  Score=50.65  Aligned_cols=25  Identities=48%  Similarity=0.664  Sum_probs=18.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++.+|.|||||||||++..++..
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567888999999999554444443

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.10  E-value=3e-06  Score=62.46  Aligned_cols=33  Identities=36%  Similarity=0.589  Sum_probs=29.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .|+.|++.||||+|||.+|++||.+...+++..
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~v  182 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLV  182 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence            468999999999999999999999998888754

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=98.10  E-value=3.9e-06  Score=66.41  Aligned_cols=32  Identities=31%  Similarity=0.451  Sum_probs=28.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ...|+|.||||+|||++|+.|++.++.++...
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~  147 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA  147 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence            35799999999999999999999998887643

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=98.09  E-value=3.3e-06  Score=64.76  Aligned_cols=105  Identities=20%  Similarity=0.160  Sum_probs=56.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh--HHHhhcccCCCch-hhhcccccchHHHHHHHHHHhhcCCeE
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG--ELVREKNLHDGWD-DELECHVINEDLVCDELEDIMEQGGNI   81 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~v   81 (176)
                      ++.-||++|.+|+||||++-+|.+.+   |++++.+|  .+.......-.+. ++....+.    -...+.++++..|.|
T Consensus        49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenir----riaevaklfadaglv  124 (627)
T KOG4238|consen   49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIR----RIAEVAKLFADAGLV  124 (627)
T ss_pred             cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHH----HHHHHHHHHhcCCce
Confidence            45689999999999999999997654   77776553  3322222111121 11111111    112233455555543


Q ss_pred             EcCCCCCCCCC------------CcccEEEEEeCChHHHHHHHhhcC
Q 030477           82 VDYHGCDFFPE------------RWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        82 id~~~~~~~~~------------~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      .-.....-|..            ..+-+-||++++..++.+|--+.-
T Consensus       125 citsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~l  171 (627)
T KOG4238|consen  125 CITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGL  171 (627)
T ss_pred             eeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHH
Confidence            31111111111            112356889999999999865443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=4.2e-06  Score=68.11  Aligned_cols=37  Identities=35%  Similarity=0.541  Sum_probs=32.0

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIG   41 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~   41 (176)
                      +...++.++|.||||||||++|+++|..++.+|++.+
T Consensus       272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~  308 (494)
T COG0464         272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK  308 (494)
T ss_pred             CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee
Confidence            4567779999999999999999999998888887543

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=2.6e-06  Score=66.98  Aligned_cols=32  Identities=28%  Similarity=0.480  Sum_probs=28.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+..+|.|||||||||+..++|..|++.++++
T Consensus       235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             hccceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            46789999999999999999999999888755

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.09  E-value=3.8e-06  Score=66.40  Aligned_cols=31  Identities=19%  Similarity=0.201  Sum_probs=27.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      -.+.|+|+|++|||||||++.|++.+|..++
T Consensus       218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v  248 (399)
T PRK08099        218 FVRTVAILGGESSGKSTLVNKLANIFNTTSA  248 (399)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            3578999999999999999999999988754

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.09  E-value=4.4e-06  Score=63.78  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=26.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRH   37 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~   37 (176)
                      ++..++|+||||+||||+++.++..++..+
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            456789999999999999999999987654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.08  E-value=2.7e-06  Score=54.96  Aligned_cols=22  Identities=41%  Similarity=0.687  Sum_probs=20.5

Q ss_pred             EEEECCCCCChHHHHHHHHHhc
Q 030477           12 ILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        12 I~l~G~~GsGKSTla~~La~~l   33 (176)
                      |+|.|+||+|||++++.|+..+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999998876

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF05729 NACHT: NACHT domain

Probab=98.07  E-value=3.7e-06  Score=58.01  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=22.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++++|+|++|+||||+++.++..+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHH
Confidence            478999999999999999999876

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.07  E-value=5e-06  Score=53.43  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=27.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELV   44 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~   44 (176)
                      .+...+.|.|++||||||+++.+.  -|-..+..+++.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~   48 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNV   48 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence            456789999999999999999997  333445545543

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PHA02244 ATPase-like protein

Probab=98.07  E-value=4e-06  Score=65.08  Aligned_cols=36  Identities=19%  Similarity=0.409  Sum_probs=31.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ....|+|.||+|||||++++.|+..+|.+++..+.+
T Consensus       118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l  153 (383)
T PHA02244        118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI  153 (383)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence            456789999999999999999999999998866543

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.06  E-value=4.9e-06  Score=64.28  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=27.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      .+..++|+||||+||||+++.+++.++..+.
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            4568999999999999999999999987553

>PRK04195 replication factor C large subunit; Provisional

Probab=98.05  E-value=4.8e-06  Score=67.59  Aligned_cols=32  Identities=34%  Similarity=0.578  Sum_probs=28.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ++.++|+||||+||||++++|++.+|+.++..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            67899999999999999999999998877543

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=98.05  E-value=1.3e-06  Score=59.65  Aligned_cols=72  Identities=17%  Similarity=0.181  Sum_probs=40.7

Q ss_pred             ccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH-HHHHHHHhcCCCC--cEEEecCCCHHHHHHHHHHHH
Q 030477           95 FDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ-VLLEEAKESYPED--IVLALKSDTIEDITRNIAILT  166 (176)
Q Consensus        95 ~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~i~~~~~s~~ev~~~i~~~~  166 (176)
                      |+++|||++|++++.+|+.+||++.+..-.....+.+. ..+..+...+...  .+++.+..+..+..+.+..++
T Consensus        68 pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~~~~~~~~~  142 (146)
T PF01712_consen   68 PDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVENPEDIEQVI  142 (146)
T ss_dssp             -SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSHHTTHHHHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccCHHHHHHHH
Confidence            57999999999999999999998665333333334455 4444444445443  344444323444444444444

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.05  E-value=2.4e-06  Score=56.52  Aligned_cols=28  Identities=46%  Similarity=0.659  Sum_probs=20.7

Q ss_pred             EEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477           12 ILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus        12 I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      |+|.|+||+||||+++.||+.+|..|-.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~R   29 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFKR   29 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence            7899999999999999999999877643

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.05  E-value=2.3e-05  Score=65.76  Aligned_cols=33  Identities=33%  Similarity=0.561  Sum_probs=29.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      -++.|+|.||||+||||+++.++..++.+++..
T Consensus       184 ~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i  216 (644)
T PRK10733        184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI  216 (644)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            356699999999999999999999999887654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.04  E-value=4.7e-06  Score=57.62  Aligned_cols=25  Identities=36%  Similarity=0.493  Sum_probs=23.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .++-.|.|+||+||||||+.+.++.
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~   51 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVAS   51 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHh
Confidence            5677999999999999999999977

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=98.04  E-value=4.5e-06  Score=55.06  Aligned_cols=30  Identities=33%  Similarity=0.468  Sum_probs=25.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      .++.+|+|.|+-||||||++|.+++.+|..
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            466799999999999999999999999764

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PLN02796 D-glycerate 3-kinase

Probab=98.03  E-value=5.6e-06  Score=63.76  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=29.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELV   44 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~   44 (176)
                      ++.+|.|.|++||||||+++.|...+.     ...++.|++.
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            567788999999999999999988773     3446666653

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.03  E-value=9e-06  Score=59.50  Aligned_cols=38  Identities=16%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVR   45 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~   45 (176)
                      ....++|+|++|||||+++++++..+     .+.+++..+...
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~   83 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL   83 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence            45689999999999999999998876     566777766543

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.03  E-value=7.1e-06  Score=59.83  Aligned_cols=39  Identities=18%  Similarity=0.298  Sum_probs=30.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVR   45 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~   45 (176)
                      ..+..++|+|++||||||+++.++..+     .+.+++++++..
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~   79 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ   79 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence            456789999999999999999998765     345677666543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.03  E-value=4.7e-06  Score=59.78  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=22.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALA   30 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La   30 (176)
                      ..++-+++|+||+||||||+.+.|-
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999999999993

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.02  E-value=6.4e-06  Score=65.60  Aligned_cols=33  Identities=30%  Similarity=0.466  Sum_probs=27.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +.+.++|+||||+||||+++.|++.++..++..
T Consensus        35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            445789999999999999999999987776543

>CHL00181 cbbX CbbX; Provisional

Probab=98.02  E-value=6.1e-06  Score=62.55  Aligned_cols=26  Identities=38%  Similarity=0.579  Sum_probs=22.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++..++|.|||||||||+|+.+++.+
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999998865

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.01  E-value=6.7e-06  Score=57.62  Aligned_cols=38  Identities=34%  Similarity=0.510  Sum_probs=29.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCC----eE--eehhHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQL----RH--INIGELVR   45 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~----~~--~~~~~~~~   45 (176)
                      +...++++||+|+|||.+++.|++.+..    ++  +++.++..
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~   45 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE   45 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence            3457889999999999999999999874    43  56555544

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.01  E-value=6.6e-06  Score=70.04  Aligned_cols=36  Identities=33%  Similarity=0.486  Sum_probs=30.8

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +...+..|+|+|||||||||+++.++..++.+++..
T Consensus       208 gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i  243 (733)
T TIGR01243       208 GIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI  243 (733)
T ss_pred             CCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence            445678899999999999999999999998877643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.01  E-value=9.8e-06  Score=57.19  Aligned_cols=42  Identities=31%  Similarity=0.540  Sum_probs=32.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhhcc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVREKN   48 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~~~   48 (176)
                      .+...++|.|++|+|||++|.+++.++     .+.|++..+++....
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~   91 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK   91 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence            456789999999999999999998765     356788888877654

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=5.6e-06  Score=68.48  Aligned_cols=33  Identities=24%  Similarity=0.494  Sum_probs=30.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .++++++|.||||+|||++++.+|+.+|-.|+.
T Consensus       348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR  380 (782)
T COG0466         348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR  380 (782)
T ss_pred             CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence            478999999999999999999999999887764

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.99  E-value=6.1e-06  Score=55.75  Aligned_cols=24  Identities=38%  Similarity=0.574  Sum_probs=21.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ++.|+|.|++|||||||+++|-..
T Consensus         1 MkrimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    1 MKRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             CceEEEECCCCCCHHHHHHHHcCC
Confidence            478999999999999999999553

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.99  E-value=7.7e-06  Score=63.08  Aligned_cols=31  Identities=23%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ...|+|.|++||||||+++.|+..+|.+++.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            4689999999999999999999998988753

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK08727 hypothetical protein; Validated

Probab=97.98  E-value=1.2e-05  Score=59.24  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=27.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELV   44 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~   44 (176)
                      ..++|+|++|||||+++++++..+   |.  .|++..+..
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~   81 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA   81 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence            459999999999999999997654   33  566666543

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.98  E-value=7.7e-06  Score=67.79  Aligned_cols=34  Identities=29%  Similarity=0.519  Sum_probs=30.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+.++.+|+||||.||||||..+|+..||.++..
T Consensus       324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             CccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            3457888999999999999999999999999744

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.97  E-value=5.3e-05  Score=56.30  Aligned_cols=43  Identities=33%  Similarity=0.335  Sum_probs=33.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKN   48 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~   48 (176)
                      ..++..|++.|+.||||||+++.|-..+.     -.++++|..+++..
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vp   63 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVP   63 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCC
Confidence            45788999999999999999999987762     34578777766553

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.97  E-value=1e-05  Score=61.34  Aligned_cols=25  Identities=40%  Similarity=0.578  Sum_probs=21.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ...++|+|||||||||+|+.+++.+
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHH
Confidence            4479999999999999998888765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.97  E-value=5.8e-06  Score=54.98  Aligned_cols=26  Identities=38%  Similarity=0.622  Sum_probs=20.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...++|+|++|+|||++++.+++.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999976

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=97.97  E-value=1e-05  Score=55.18  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=27.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      ...-|+|+|++|+||||++..|.++ |..++. ||
T Consensus        13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lva-DD   45 (149)
T cd01918          13 GGIGVLITGPSGIGKSELALELIKR-GHRLVA-DD   45 (149)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEE-CC
Confidence            3568999999999999999999774 777776 54

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PHA03135 thymidine kinase; Provisional

Probab=97.96  E-value=0.00036  Score=53.58  Aligned_cols=29  Identities=17%  Similarity=0.285  Sum_probs=23.8

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.+..--.|.|.|+.|+||||+++.|++.
T Consensus         5 ~~~~~~~rIYlDG~~GvGKTT~~~~l~~~   33 (343)
T PHA03135          5 MTSAQLIRVYLDGPFGIGKTSMLNEMPDH   33 (343)
T ss_pred             cCCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            33445567889999999999999999885

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.95  E-value=8.2e-06  Score=65.66  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=28.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      +..+.+|+||+||||||..+.|++.+|+.++.
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~E  140 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIE  140 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence            45689999999999999999999999988763

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.95  E-value=6e-06  Score=63.80  Aligned_cols=37  Identities=32%  Similarity=0.519  Sum_probs=27.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC--CeEe--ehhHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ--LRHI--NIGEL   43 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~--~~~~~   43 (176)
                      ..++.|+|.||||||||.+|-.+|++||  .||.  +.+++
T Consensus        48 ~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi   88 (398)
T PF06068_consen   48 IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI   88 (398)
T ss_dssp             -TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred             ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence            3578999999999999999999999996  5664  44444

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.95  E-value=3e-05  Score=65.24  Aligned_cols=27  Identities=41%  Similarity=0.485  Sum_probs=23.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ...++|+|++|+||||+++.|++.+++
T Consensus        38 ~HAyLFtGPpGvGKTTlAriLAKaLnC   64 (830)
T PRK07003         38 HHAYLFTGTRGVGKTTLSRIFAKALNC   64 (830)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            446789999999999999999999865

>PRK06526 transposase; Provisional

Probab=97.94  E-value=9.2e-06  Score=60.51  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=28.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVRE   46 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~   46 (176)
                      .+..++|+||||+|||+++..|+..+   |..  +++..+++..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~  140 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR  140 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence            45789999999999999999998764   333  3444444433

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.93  E-value=9.8e-06  Score=58.89  Aligned_cols=26  Identities=23%  Similarity=0.365  Sum_probs=23.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..++-++.|.||+||||||+...|+-
T Consensus        28 i~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          28 IEAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            35778999999999999999999965

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.93  E-value=1.2e-05  Score=53.04  Aligned_cols=28  Identities=32%  Similarity=0.332  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..||.++.+.|++|+|||.+++.||+.+
T Consensus        50 p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   50 PRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            4566677799999999999999999985

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.92  E-value=7.3e-06  Score=60.46  Aligned_cols=30  Identities=33%  Similarity=0.478  Sum_probs=21.4

Q ss_pred             EECCCCCChHHHHHHHHHhcC-----CeEeehhHH
Q 030477           14 VTGTPGTGKTTTSTALAESTQ-----LRHINIGEL   43 (176)
Q Consensus        14 l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~   43 (176)
                      |+||+||||||+++.+.+.+.     ..++++|.-
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa   35 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA   35 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence            689999999999999998762     334555543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK12377 putative replication protein; Provisional

Probab=97.92  E-value=2.1e-05  Score=58.35  Aligned_cols=38  Identities=21%  Similarity=0.429  Sum_probs=29.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHhh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVRE   46 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~~   46 (176)
                      ...++|+|+||+|||+++.+++..+   |.  .+++..+++..
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~  143 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR  143 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence            4679999999999999999999887   33  45666666554

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.91  E-value=0.00045  Score=58.99  Aligned_cols=35  Identities=31%  Similarity=0.523  Sum_probs=28.3

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeE--eehhHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRH--INIGELVR   45 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~--~~~~~~~~   45 (176)
                      .++++||+|+|||++|+.||+.++..+  ++.+++..
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~  522 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME  522 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence            578999999999999999999997654  45555433

>PRK08181 transposase; Validated

Probab=97.91  E-value=1.8e-05  Score=59.33  Aligned_cols=40  Identities=25%  Similarity=0.424  Sum_probs=31.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREK   47 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~   47 (176)
                      +...++|+||+|+|||+++.+++..+   |  +.|++..+++...
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            45679999999999999999998754   4  5567777766543

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.91  E-value=1.6e-05  Score=45.84  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ...+|+|+.||||||+..++.-
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999844

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.91  E-value=1.1e-05  Score=59.01  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.++-++.|.||+||||||+.+.+|.-
T Consensus        26 v~~GEfvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            467889999999999999999999874

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.90  E-value=1.3e-05  Score=63.18  Aligned_cols=37  Identities=24%  Similarity=0.200  Sum_probs=29.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELV   44 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~   44 (176)
                      ++.+|.|.|++||||||+++.|...+.     ...++.|++.
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            567888999999999999999976552     4456767654

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.90  E-value=1.1e-05  Score=60.06  Aligned_cols=29  Identities=31%  Similarity=0.487  Sum_probs=25.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRH   37 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~   37 (176)
                      .-.+++.||||.||||+|..+|.++|..+
T Consensus        52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~   80 (332)
T COG2255          52 LDHVLLFGPPGLGKTTLAHIIANELGVNL   80 (332)
T ss_pred             cCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence            44799999999999999999999997654

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.89  E-value=9.1e-06  Score=59.94  Aligned_cols=26  Identities=38%  Similarity=0.491  Sum_probs=22.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..+|.|+||||+||||+...|...+
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            56789999999999999999998876

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.89  E-value=2e-05  Score=60.92  Aligned_cols=25  Identities=48%  Similarity=0.795  Sum_probs=22.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+.++|+||||+||||+++.+++.+
T Consensus        36 ~~~lll~Gp~GtGKT~la~~~~~~l   60 (337)
T PRK12402         36 LPHLLVQGPPGSGKTAAVRALAREL   60 (337)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3478999999999999999999987

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.89  E-value=9.5e-06  Score=57.09  Aligned_cols=27  Identities=41%  Similarity=0.567  Sum_probs=18.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++|+|++|+|||++.+.+.+.+
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999988876

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.89  E-value=1.2e-05  Score=57.67  Aligned_cols=25  Identities=40%  Similarity=0.579  Sum_probs=21.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      -+|+|+||+||||||++..|...+.
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3789999999999999999887763

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.88  E-value=1.4e-05  Score=61.56  Aligned_cols=27  Identities=37%  Similarity=0.450  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|.|+|+|||||||++..|...+
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999987765

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.88  E-value=1.5e-05  Score=59.68  Aligned_cols=26  Identities=38%  Similarity=0.460  Sum_probs=23.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +..++|+|++|+||||+++.++..+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            45899999999999999999998874

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK10646 ADP-binding protein; Provisional

Probab=97.88  E-value=2e-05  Score=53.90  Aligned_cols=29  Identities=28%  Similarity=0.315  Sum_probs=26.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ..+.+|+|.|.-||||||++|.|++.+|.
T Consensus        26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         26 DGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            45668999999999999999999999986

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=1.4e-05  Score=58.90  Aligned_cols=44  Identities=34%  Similarity=0.438  Sum_probs=34.6

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee--hhHHHhh
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN--IGELVRE   46 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~--~~~~~~~   46 (176)
                      |-++-+++.+++.||||||||.++++.|.+.-+.|+.  .++++..
T Consensus       183 qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk  228 (408)
T KOG0727|consen  183 QIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK  228 (408)
T ss_pred             HhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence            4566788999999999999999999999987666653  3555443

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.88  E-value=0.00089  Score=58.05  Aligned_cols=36  Identities=42%  Similarity=0.547  Sum_probs=28.8

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHhh
Q 030477           11 NILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVRE   46 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~~   46 (176)
                      .++++||+|+|||.+|+.|++.+     .+..++++++...
T Consensus       598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~  638 (852)
T TIGR03345       598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA  638 (852)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence            58899999999999999999987     2345677766543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK09183 transposase/IS protein; Provisional

Probab=97.87  E-value=2.1e-05  Score=58.82  Aligned_cols=38  Identities=29%  Similarity=0.479  Sum_probs=28.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELV   44 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~   44 (176)
                      .++..++|.||+|+|||+++.+|+..+   |.  .+++..++.
T Consensus       100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~  142 (259)
T PRK09183        100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL  142 (259)
T ss_pred             hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence            456689999999999999999997653   43  345555544

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.87  E-value=1.3e-05  Score=61.67  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=23.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +.++-+++|.||+||||||+.+.+|-
T Consensus        26 i~~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          26 IEDGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            35678999999999999999999977

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.87  E-value=6.5e-05  Score=54.78  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=28.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc-------CCeEeehhHHHhh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST-------QLRHINIGELVRE   46 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l-------~~~~~~~~~~~~~   46 (176)
                      ...++|+|++|+|||+|.++++.++       .+.+++.+++...
T Consensus        34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~   78 (219)
T PF00308_consen   34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE   78 (219)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence            3468999999999999999998764       2456777666443

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PLN03025 replication factor C subunit; Provisional

Probab=97.87  E-value=1.5e-05  Score=61.36  Aligned_cols=26  Identities=50%  Similarity=0.823  Sum_probs=23.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+.++|+||||+||||+++.+++.+
T Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         33 NMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            44568899999999999999999986

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00026  Score=59.95  Aligned_cols=38  Identities=34%  Similarity=0.500  Sum_probs=31.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREK   47 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~   47 (176)
                      ...++.||+|+|||-+|+.||+.+.     ...||++++...-
T Consensus       522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH  564 (786)
T COG0542         522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH  564 (786)
T ss_pred             eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence            4677899999999999999999873     5668999887664

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=1.8e-05  Score=58.69  Aligned_cols=37  Identities=32%  Similarity=0.449  Sum_probs=33.4

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .++.+++-|++.||||+|||.+|+++|.+.+++|+..
T Consensus       206 lgidppkgvllygppgtgktl~aravanrtdacfirv  242 (435)
T KOG0729|consen  206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRV  242 (435)
T ss_pred             cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEee
Confidence            4567889999999999999999999999999998754

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=1.4e-05  Score=66.18  Aligned_cols=33  Identities=21%  Similarity=0.399  Sum_probs=30.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .++++++++||||.|||++++.+|..+|-.||.
T Consensus       436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR  468 (906)
T KOG2004|consen  436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFR  468 (906)
T ss_pred             CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence            478999999999999999999999999877753

>PHA02624 large T antigen; Provisional

Probab=97.86  E-value=2.3e-05  Score=64.29  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +.++...++|.|||||||||++..|.+-+|..+++.
T Consensus       427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            346778999999999999999999999997667664

>TIGR00763 lon ATP-dependent protease La

Probab=97.85  E-value=1.6e-05  Score=68.05  Aligned_cols=32  Identities=25%  Similarity=0.550  Sum_probs=28.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      +++.++|.||||+||||+++.|++.++.+++.
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~  377 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR  377 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence            55689999999999999999999999877753

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.85  E-value=1.7e-05  Score=55.91  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++-+++|+||+||||||+.+.|....
T Consensus        25 i~~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          25 IPKGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             ecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence            3567799999999999999999997654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.85  E-value=2.1e-05  Score=55.12  Aligned_cols=32  Identities=34%  Similarity=0.346  Sum_probs=25.3

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc---CC--eEeehhH
Q 030477           11 NILVTGTPGTGKTTTSTALAEST---QL--RHINIGE   42 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~   42 (176)
                      +++++|+||+||||++..++..+   |.  .+++.|.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~   38 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT   38 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence            68899999999999999998875   43  3466553

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=97.83  E-value=0.00096  Score=49.85  Aligned_cols=27  Identities=11%  Similarity=0.148  Sum_probs=24.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      .+.+|+|.|..||||..+.+.|.+.++
T Consensus        55 ~~vlIv~eG~DaAGKG~~I~~l~~~lD   81 (264)
T TIGR03709        55 RSLLLVLQAMDAAGKDGTIRHVMSGVN   81 (264)
T ss_pred             CcEEEEEECCCCCCchHHHHHHHHhcC
Confidence            367888999999999999999999884

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.83  E-value=0.001  Score=57.58  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=25.9

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHH
Q 030477           11 NILVTGTPGTGKTTTSTALAEST-----QLRHINIGEL   43 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~   43 (176)
                      .++++||+|+|||++|+.||+.+     .+..++.+++
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~  578 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEY  578 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhc
Confidence            56799999999999999999986     2334555554

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.83  E-value=1.8e-05  Score=56.23  Aligned_cols=27  Identities=44%  Similarity=0.610  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+...++|+|++||||||+.+.|...+
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999999999999999998765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.82  E-value=1.7e-05  Score=64.00  Aligned_cols=26  Identities=38%  Similarity=0.500  Sum_probs=23.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ..++|+||||+||||+|+.+++.+++
T Consensus        37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         37 HAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45899999999999999999998764

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.82  E-value=2.7e-05  Score=52.74  Aligned_cols=29  Identities=28%  Similarity=0.471  Sum_probs=26.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ..+-+|+|.|.-||||||++|.+++.+|.
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            56789999999999999999999999975

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.82  E-value=2.5e-05  Score=56.40  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhH
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGE   42 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~   42 (176)
                      ++.++.++.|+|+||||||+++..++...   |  +.+++...
T Consensus         8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237         8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            45678899999999999999999988653   3  55666653

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=97.82  E-value=0.00076  Score=49.41  Aligned_cols=28  Identities=25%  Similarity=0.312  Sum_probs=24.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      .+.+|+|.|..||||..+.+.|.+.++-
T Consensus        30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDP   57 (230)
T TIGR03707        30 ARVVIVFEGRDAAGKGGTIKRITEHLNP   57 (230)
T ss_pred             CCEEEEEeCCCCCCchHHHHHHHHhcCC
Confidence            4678889999999999999999998843

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.81  E-value=1.9e-05  Score=59.29  Aligned_cols=27  Identities=37%  Similarity=0.487  Sum_probs=24.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..+|.|+|+||+||||+...|..+|
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            366799999999999999999999887

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=3e-05  Score=58.57  Aligned_cols=34  Identities=29%  Similarity=0.514  Sum_probs=30.3

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      ++..|+.++|.||||+|||.+|++++..+|+.++
T Consensus       162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl  195 (388)
T KOG0651|consen  162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFL  195 (388)
T ss_pred             CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceE
Confidence            4567888899999999999999999999988775

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.81  E-value=2e-05  Score=57.43  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=23.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .++-.+.|.|++||||||+++.|+.-
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl   56 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGL   56 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence            56778999999999999999999763

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=2.4e-05  Score=59.32  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      ...|++.||.|||||.+|+.||+.+++||--+|.
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA  130 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA  130 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence            4689999999999999999999999999865443

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.80  E-value=0.00028  Score=48.40  Aligned_cols=44  Identities=18%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc--CCeEeehhHHHhhcccCCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST--QLRHINIGELVREKNLHDG   52 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~~~~~~~~~~~~~   52 (176)
                      +.+-++.||.||||||+...+-..+  +..+++.|++........+
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p   47 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNP   47 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCc
Confidence            3567789999999999987764444  6788999999887665544

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.80  E-value=0.00039  Score=59.41  Aligned_cols=26  Identities=38%  Similarity=0.593  Sum_probs=23.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....++|.||||+|||++++.|++++
T Consensus       202 ~~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       202 KKNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999987

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.80  E-value=2e-05  Score=53.40  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++|.|+|+.+|||||+++.|...+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999998876

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.79  E-value=2.2e-05  Score=57.18  Aligned_cols=27  Identities=44%  Similarity=0.773  Sum_probs=24.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++++.++|+||||+||||-...||.++
T Consensus        46 gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   46 GNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            467899999999999999999999986

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.78  E-value=2.2e-05  Score=61.51  Aligned_cols=26  Identities=42%  Similarity=0.520  Sum_probs=23.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ..++|+||+|+||||+|+.+++.+++
T Consensus        39 h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         39 HAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            45789999999999999999998864

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.78  E-value=2.4e-05  Score=56.18  Aligned_cols=29  Identities=21%  Similarity=0.214  Sum_probs=24.4

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+.+..+-.|.||+||||||+.+.| .++
T Consensus        28 l~i~~~~VTAlIGPSGcGKST~LR~l-NRm   56 (253)
T COG1117          28 LDIPKNKVTALIGPSGCGKSTLLRCL-NRM   56 (253)
T ss_pred             eeccCCceEEEECCCCcCHHHHHHHH-Hhh
Confidence            34567889999999999999999999 444

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=97.77  E-value=0.0007  Score=47.28  Aligned_cols=148  Identities=15%  Similarity=0.247  Sum_probs=76.5

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCC---eEeehhHHHhhcc----------cC--CCchhhhccccc---------chHH
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQL---RHINIGELVREKN----------LH--DGWDDELECHVI---------NEDL   66 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~---~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~---------~~~~   66 (176)
                      +|+|+|-.+|||.|++..|.++++.   .++.+++.+...-          +.  ..+.+.++...+         +...
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~   80 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF   80 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence            5899999999999999999888874   2566665544331          00  111111111110         1223


Q ss_pred             HHHHHHHHhhcCCeEEc-C---CCCCCCCCCc--ccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh
Q 030477           67 VCDELEDIMEQGGNIVD-Y---HGCDFFPERW--FDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE  140 (176)
Q Consensus        67 l~~~i~~~~~~~~~vid-~---~~~~~~~~~~--~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  140 (176)
                      +++.+.......-+||+ .   +....|....  .-..|.+.++.+++.+|.-...    ...++.+.+-       -..
T Consensus        81 F~r~~~~~~~~~v~iIsD~Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~Ft----~gvdd~~SEc-------~lD  149 (182)
T TIGR01223        81 FCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFT----PGVDDAESEC-------GLD  149 (182)
T ss_pred             HHHHHHhccCCCEEEEeCCCcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHhcc----cccccccccc-------CCC
Confidence            34333222222234553 1   2222333322  2357888999999999863221    1111111100       001


Q ss_pred             cCCC-CcEEEecCCCHHHHHHHHHHHHHHHH
Q 030477          141 SYPE-DIVLALKSDTIEDITRNIAILTDWVR  170 (176)
Q Consensus       141 ~~~~-~~~i~~~~~s~~ev~~~i~~~~~~~~  170 (176)
                      .|.. +.+| .|+++.+++.+.+..+++.+.
T Consensus       150 d~~~~D~vi-~Nd~~~~~l~~~l~~l~~~i~  179 (182)
T TIGR01223       150 NFGDFDWVI-ENHGVEQRLEEQLENLIEFIR  179 (182)
T ss_pred             cccceeEEE-ecCCChHHHHHHHHHHHHHHH
Confidence            2322 3333 455567778888888888774

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.77  E-value=1.9e-05  Score=62.31  Aligned_cols=26  Identities=46%  Similarity=0.682  Sum_probs=23.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..-|+|.|+||+||||+|++||+-+
T Consensus       262 raeGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         262 RAEGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             hhcceEEecCCCCChhHHHHHHHHHH
Confidence            45689999999999999999999965

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.77  E-value=3.1e-05  Score=54.16  Aligned_cols=26  Identities=35%  Similarity=0.331  Sum_probs=22.3

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      +++|+|++|||||++|..++...+.+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~~   26 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGGP   26 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            47899999999999999998876533

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.77  E-value=3e-05  Score=65.60  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=28.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIG   41 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~   41 (176)
                      +.+.++|+||||+||||+++.+++.++..++..+
T Consensus        51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln   84 (725)
T PRK13341         51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN   84 (725)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence            4467899999999999999999998877665444

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.76  E-value=2.6e-05  Score=59.81  Aligned_cols=29  Identities=34%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRH   37 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~   37 (176)
                      +..++++||+|+||||+++.+++.++..+
T Consensus        43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~   71 (316)
T PHA02544         43 PNMLLHSPSPGTGKTTVAKALCNEVGAEV   71 (316)
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence            34666699999999999999999886544

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.76  E-value=0.00092  Score=54.17  Aligned_cols=33  Identities=27%  Similarity=0.231  Sum_probs=27.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~   39 (176)
                      ..+.+|+|.|..||||+++.+.|.+.+   |+.+..
T Consensus        38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~   73 (493)
T TIGR03708        38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHA   73 (493)
T ss_pred             CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEe
Confidence            456789999999999999999999988   455543

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.76  E-value=2.4e-05  Score=53.62  Aligned_cols=23  Identities=48%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +++|+|+||+||||++..++..+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=97.76  E-value=2.6e-05  Score=59.93  Aligned_cols=34  Identities=32%  Similarity=0.550  Sum_probs=28.7

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEe
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHI   38 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~   38 (176)
                      +...++.|++.||||||||.+|-.+|++||  .||.
T Consensus        61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~   96 (450)
T COG1224          61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV   96 (450)
T ss_pred             CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence            334678999999999999999999999996  4553

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.75  E-value=2.4e-05  Score=64.02  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=24.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+.++++|.||||+||||+++.|++.+
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHH
Confidence            366799999999999999999999876

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.75  E-value=2.2e-05  Score=56.24  Aligned_cols=25  Identities=40%  Similarity=0.466  Sum_probs=22.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      |++|++.||+|+||||.+-.||..+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            5689999999999999999999876

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.74  E-value=2.8e-05  Score=62.46  Aligned_cols=26  Identities=31%  Similarity=0.394  Sum_probs=23.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ..++|+||+|+||||+|+.||+.+++
T Consensus        41 ha~Lf~GP~GtGKTTlAriLAk~Lnc   66 (484)
T PRK14956         41 HAYIFFGPRGVGKTTIARILAKRLNC   66 (484)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            35899999999999999999999876

>COG4240 Predicted kinase [General function prediction only]

Probab=97.74  E-value=4.4e-05  Score=55.31  Aligned_cols=38  Identities=18%  Similarity=0.297  Sum_probs=29.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---C---CeEeehhHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---Q---LRHINIGELV   44 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~---~~~~~~~~~~   44 (176)
                      .++.++.|+||-||||||++..|...+   |   ...+++||+.
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY   91 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY   91 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh
Confidence            457788899999999999998886654   3   3457888864

>PRK08116 hypothetical protein; Validated

Probab=97.74  E-value=5.5e-05  Score=56.86  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=29.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHhh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVRE   46 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~~   46 (176)
                      +..++|+|++|+|||+++.+++..+   |.  .+++..+++..
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~  156 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR  156 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            4569999999999999999999975   43  45566666553

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.74  E-value=3.3e-05  Score=53.49  Aligned_cols=25  Identities=32%  Similarity=0.292  Sum_probs=22.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +++|.|+|++||||||++..|...+
T Consensus         1 m~vi~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           1 MKVIGFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999999886

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK13695 putative NTPase; Provisional

Probab=97.73  E-value=3.3e-05  Score=54.20  Aligned_cols=24  Identities=46%  Similarity=0.566  Sum_probs=21.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.|+|+|++||||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987765

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.73  E-value=2.9e-05  Score=60.07  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=23.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +.++-++.|-||+||||||+.+.||-
T Consensus        28 i~~Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          28 IKKGEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhC
Confidence            45677899999999999999999976

>TIGR00101 ureG urease accessory protein UreG

Probab=97.73  E-value=3.3e-05  Score=55.48  Aligned_cols=25  Identities=36%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      |..|.|+|++||||||+.+.+...+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999998765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.73  E-value=3.2e-05  Score=55.01  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        15 AERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4577899999999999999999997643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.73  E-value=3.1e-05  Score=56.22  Aligned_cols=27  Identities=19%  Similarity=0.302  Sum_probs=24.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567899999999999999999998754

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.73  E-value=5.3e-05  Score=58.50  Aligned_cols=39  Identities=31%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREK   47 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~   47 (176)
                      ...++|.|++|+|||+++.+++..+   |  +.+++.++++...
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l  226 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL  226 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence            4789999999999999999999976   3  4556767765543

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.73  E-value=6.5e-05  Score=57.50  Aligned_cols=40  Identities=23%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHhhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVREK   47 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~~~   47 (176)
                      ..+.++|.|++|+|||+++.+++..+   |.  .++...+++...
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l  199 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL  199 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence            45789999999999999999999987   43  456777766554

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.72  E-value=3.3e-05  Score=56.16  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=26.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      .+..++|.|+||+||||+|+.|+.+  ..+++.|.
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~   43 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDM   43 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccc
Confidence            3678999999999999999999632  45666555

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.72  E-value=2e-05  Score=52.91  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|+|++||||||+.+.|+..+
T Consensus         8 i~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    8 IKPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEEccCCCccccceeeecccc
Confidence            3567899999999999999999997754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.72  E-value=3.3e-05  Score=62.86  Aligned_cols=28  Identities=32%  Similarity=0.482  Sum_probs=24.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      +..++|+||+|+||||+|+.+++.+++.
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            4578999999999999999999998663

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.72  E-value=3.3e-05  Score=55.91  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567799999999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.72  E-value=3.4e-05  Score=55.71  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.71  E-value=3.8e-05  Score=54.24  Aligned_cols=31  Identities=29%  Similarity=0.396  Sum_probs=23.3

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477           11 NILVTGTPGTGKTTTSTALAEST-----QLRHINIG   41 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~   41 (176)
                      .++|.|+||||||+++..++...     .+.+++.+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            47899999999999999886643     34456543

A related protein is found in archaea.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.71  E-value=3.4e-05  Score=56.03  Aligned_cols=28  Identities=21%  Similarity=0.308  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          27 IEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            3567899999999999999999998754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13768 GTPase; Provisional

Probab=97.71  E-value=4.1e-05  Score=57.08  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=26.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---QL--RHINIGE   42 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~   42 (176)
                      +.+|++.|++||||||++..++..+   |.  .+++.|.
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~   40 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP   40 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence            3689999999999999999998766   33  3455543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.71  E-value=7.5e-05  Score=61.72  Aligned_cols=105  Identities=11%  Similarity=0.161  Sum_probs=58.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc-------CCeEeehhHHHhhccc--CC----Cchh---hhcccccc----------
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST-------QLRHINIGELVREKNL--HD----GWDD---ELECHVIN----------   63 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l-------~~~~~~~~~~~~~~~~--~~----~~~~---~~~~~~~~----------   63 (176)
                      ..++|+|++|+|||+|+++++..+       .+.|++..+++.....  ..    .+..   ..+.++++          
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~  394 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES  394 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence            348999999999999999999865       2356777766543210  01    0110   11111221          


Q ss_pred             -hHHHHHHHHHHhhc-CCeEEcCCC----CCCC-----CCCcccEEEEEeCChHHHHHHHhh
Q 030477           64 -EDLVCDELEDIMEQ-GGNIVDYHG----CDFF-----PERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        64 -~~~l~~~i~~~~~~-~~~vid~~~----~~~~-----~~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                       ...+++.++.+... +.+|+....    ...+     .+-...+++.|..+..+.+..+..
T Consensus       395 tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~  456 (617)
T PRK14086        395 TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR  456 (617)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence             14577777776654 456663211    1111     112346788888877666555543

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.71  E-value=6.4e-05  Score=55.63  Aligned_cols=37  Identities=22%  Similarity=0.517  Sum_probs=29.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhh
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVRE   46 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~   46 (176)
                      ..++|.|++|+|||+++.+++..+   |  +.+++..+++..
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~  141 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA  141 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence            578999999999999999999987   3  344566666543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.70  E-value=3.8e-05  Score=54.10  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=22.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..++.++.|.||+||||||+.+.+.-
T Consensus        18 i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          18 IPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            45778999999999999999999853

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.70  E-value=3.5e-05  Score=61.42  Aligned_cols=27  Identities=37%  Similarity=0.548  Sum_probs=24.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ....|+|+||||+||||+|+.|+..++
T Consensus       193 ~~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            467899999999999999999999874

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=97.70  E-value=3.9e-05  Score=59.31  Aligned_cols=31  Identities=35%  Similarity=0.582  Sum_probs=28.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      .+..++|.|+||+|||++++.+|+.+|.+++
T Consensus        42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~   72 (329)
T COG0714          42 AGGHVLLEGPPGVGKTLLARALARALGLPFV   72 (329)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            4578999999999999999999999987775

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=97.70  E-value=0.00051  Score=50.31  Aligned_cols=32  Identities=28%  Similarity=0.203  Sum_probs=25.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---CCeEeeh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---QLRHINI   40 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~   40 (176)
                      +.+|+|.|+.||||+.+.+.|.+.+   |+.+.+.
T Consensus        31 ~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~   65 (228)
T PF03976_consen   31 PVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAF   65 (228)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-
T ss_pred             cEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeC
Confidence            4688899999999999999999887   4555443

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.69  E-value=3.7e-05  Score=55.53  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567899999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.69  E-value=3.9e-05  Score=58.97  Aligned_cols=27  Identities=44%  Similarity=0.477  Sum_probs=24.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|.|.||+|+||||++..||..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            357799999999999999999998876

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.69  E-value=6.5e-05  Score=56.01  Aligned_cols=40  Identities=25%  Similarity=0.441  Sum_probs=32.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHhhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVREK   47 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~~~   47 (176)
                      ++..++|.|+||+|||.++.+|+.++   |  ..|+...+++...
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L  148 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL  148 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            56789999999999999999998876   3  3456777776664

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.69  E-value=3.9e-05  Score=55.78  Aligned_cols=28  Identities=29%  Similarity=0.232  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567799999999999999999998754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.69  E-value=4.1e-05  Score=55.01  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=21.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ....+++|+||+||||||+.+.++.
T Consensus        23 ~~g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          23 EKKNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHH
Confidence            3457899999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PHA03134 thymidine kinase; Provisional

Probab=97.68  E-value=0.00083  Score=51.59  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             cEEEEEeCChHHHHHHHhhcCCCCccc
Q 030477           96 DRVVVLQTENSVLYDRLTKRGYTGAKL  122 (176)
Q Consensus        96 ~~vi~l~~~~~~~~~R~~~r~~~~~~~  122 (176)
                      +.+|+++.++++..+|+.+|++..+..
T Consensus       165 ~niVl~~l~~~e~~~Rl~~R~R~gE~i  191 (340)
T PHA03134        165 GNLVVTTLNPDEHLRRLRARARIGEQI  191 (340)
T ss_pred             CeEEEEeCCHHHHHHHHHHcCCCcccc
Confidence            678999999999999999999987764

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.68  E-value=4.1e-05  Score=55.46  Aligned_cols=27  Identities=33%  Similarity=0.430  Sum_probs=24.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567899999999999999999997754

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.68  E-value=4e-05  Score=56.37  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.68  E-value=4.1e-05  Score=56.57  Aligned_cols=28  Identities=18%  Similarity=0.290  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        25 INPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3567899999999999999999998654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.68  E-value=4e-05  Score=55.20  Aligned_cols=28  Identities=36%  Similarity=0.356  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          23 LYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3577899999999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.68  E-value=4.2e-05  Score=55.31  Aligned_cols=28  Identities=18%  Similarity=0.337  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          23 VKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd01394 radB RadB

Probab=97.68  E-value=4.8e-05  Score=55.30  Aligned_cols=37  Identities=32%  Similarity=0.371  Sum_probs=29.1

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIG   41 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~   41 (176)
                      +..++.++.|+|+|||||||++..++...   |  +.+++.+
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            45678899999999999999999998764   2  3456544

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.68  E-value=4.2e-05  Score=55.95  Aligned_cols=28  Identities=21%  Similarity=0.203  Sum_probs=24.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3577899999999999999999998754

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.68  E-value=4.1e-05  Score=55.71  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.68  E-value=4.3e-05  Score=57.50  Aligned_cols=35  Identities=31%  Similarity=0.267  Sum_probs=27.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCe--Eeehh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIG   41 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~   41 (176)
                      .++.+|.++|++|+||||++..||..+   |..  ++++|
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D  109 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD  109 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            356789999999999999999998866   433  35555

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.68  E-value=4.3e-05  Score=59.10  Aligned_cols=26  Identities=42%  Similarity=0.413  Sum_probs=22.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|+++|++|+||||++..|+..+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46799999999999999888888765

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.68  E-value=5.3e-05  Score=64.80  Aligned_cols=33  Identities=27%  Similarity=0.508  Sum_probs=28.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .++.+++|.||||+||||+++.+++.++.+++.
T Consensus       347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~  379 (784)
T PRK10787        347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR  379 (784)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            366789999999999999999999999877753

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.68  E-value=4.3e-05  Score=55.32  Aligned_cols=28  Identities=25%  Similarity=0.264  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567899999999999999999998743

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.67  E-value=6.2e-05  Score=54.98  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIG   41 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~   41 (176)
                      +..++.++.|+|+||||||+++..++...     .+.|++.+
T Consensus        19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            44677899999999999999999998643     35566665

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.67  E-value=3.8e-05  Score=55.93  Aligned_cols=28  Identities=21%  Similarity=0.221  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          23 VPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4577899999999999999999997654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.67  E-value=3.9e-05  Score=55.57  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          22 VKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3577899999999999999999997754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.67  E-value=0.00011  Score=63.08  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=23.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ..++|+|++|+||||+++.|++.+++
T Consensus        38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C   63 (824)
T PRK07764         38 HAYLFSGPRGCGKTSSARILARSLNC   63 (824)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCc
Confidence            45789999999999999999999865

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.66  E-value=4.1e-05  Score=55.34  Aligned_cols=26  Identities=35%  Similarity=0.289  Sum_probs=22.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++ ++.|.|++||||||+.+.|+..+
T Consensus        24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          24 GPG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            456 89999999999999999998643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.66  E-value=4.7e-05  Score=53.37  Aligned_cols=27  Identities=22%  Similarity=0.163  Sum_probs=24.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++..+.|.|++||||||+.+.|+..+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            567799999999999999999997754

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.66  E-value=4.6e-05  Score=56.20  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+++.|+.-+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3577899999999999999999998644

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.66  E-value=5e-05  Score=64.61  Aligned_cols=34  Identities=24%  Similarity=0.489  Sum_probs=28.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHI--NIGEL   43 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~   43 (176)
                      ..++|+||||+|||++|+.||+.++.+++  +++++
T Consensus       489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~  524 (758)
T PRK11034        489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY  524 (758)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence            36899999999999999999999987764  44444

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.66  E-value=4.5e-05  Score=56.05  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567799999999999999999998754

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.66  E-value=4.1e-05  Score=56.29  Aligned_cols=28  Identities=25%  Similarity=0.189  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            3577899999999999999999997644

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.66  E-value=4.7e-05  Score=55.90  Aligned_cols=28  Identities=18%  Similarity=0.202  Sum_probs=24.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++..+.|.|++||||||+.+.|+..+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          28 VPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567899999999999999999998764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.66  E-value=4.7e-05  Score=55.27  Aligned_cols=28  Identities=29%  Similarity=0.363  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+.-+
T Consensus        10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         10 MGYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4678899999999999999999998643

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.66  E-value=4.3e-05  Score=59.26  Aligned_cols=27  Identities=37%  Similarity=0.556  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .....|+|+|++||||||++++|...+
T Consensus       160 ~~~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        160 VGRLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             HcCCeEEEECCCCccHHHHHHHHHccc
Confidence            356889999999999999999998876

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.65  E-value=5.3e-05  Score=57.82  Aligned_cols=26  Identities=50%  Similarity=0.693  Sum_probs=23.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....|+|+|++||||||++++|.+.+
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998875

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.65  E-value=4.6e-05  Score=54.84  Aligned_cols=28  Identities=18%  Similarity=0.223  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        21 IEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567899999999999999999998754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=3.4e-05  Score=57.90  Aligned_cols=38  Identities=26%  Similarity=0.475  Sum_probs=33.3

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .|++.+|+-+++.|+||+|||.+|+++|....+.|+..
T Consensus       213 emGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv  250 (440)
T KOG0726|consen  213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV  250 (440)
T ss_pred             HcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh
Confidence            36778899999999999999999999999888877643

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.65  E-value=5.3e-05  Score=52.81  Aligned_cols=28  Identities=36%  Similarity=0.467  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+++.|+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          24 IKPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3577899999999999999999997754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.65  E-value=4.9e-05  Score=55.00  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++..+.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          23 IADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.65  E-value=5e-05  Score=53.51  Aligned_cols=27  Identities=37%  Similarity=0.433  Sum_probs=24.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            567899999999999999999997743

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.65  E-value=4.3e-05  Score=55.61  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=23.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            567899999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.65  E-value=5.6e-05  Score=56.13  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=27.0

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +..++..++|+|++|+||||+++.++..+.
T Consensus        12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128          12 PIGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            567889999999999999999999998764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.65  E-value=5.1e-05  Score=54.24  Aligned_cols=28  Identities=18%  Similarity=0.213  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567899999999999999999998754

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.65  E-value=5.4e-05  Score=57.31  Aligned_cols=27  Identities=37%  Similarity=0.411  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|+|+||+|+||||++..|+..+
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998765

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.64  E-value=4.9e-05  Score=55.69  Aligned_cols=28  Identities=29%  Similarity=0.205  Sum_probs=24.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.64  E-value=0.00023  Score=53.69  Aligned_cols=28  Identities=43%  Similarity=0.586  Sum_probs=24.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      .+.-+|+++||.||||||...++.+.++
T Consensus       123 ~~~GLILVTGpTGSGKSTTlAamId~iN  150 (353)
T COG2805         123 SPRGLILVTGPTGSGKSTTLAAMIDYIN  150 (353)
T ss_pred             CCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence            4667999999999999999888888764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.64  E-value=5.3e-05  Score=53.35  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567899999999999999999997643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.64  E-value=5.5e-05  Score=59.88  Aligned_cols=26  Identities=35%  Similarity=0.533  Sum_probs=23.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|+|+||+||||||++..||..+
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998754

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.64  E-value=5e-05  Score=52.39  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +|.|+|++||||||++..|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998875

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.64  E-value=5.1e-05  Score=55.85  Aligned_cols=28  Identities=25%  Similarity=0.302  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4578899999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.64  E-value=5.1e-05  Score=55.95  Aligned_cols=28  Identities=29%  Similarity=0.293  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          25 IPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.64  E-value=5.2e-05  Score=56.00  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         25 CPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4577899999999999999999998754

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.64  E-value=5.5e-05  Score=53.25  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          25 LKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3567899999999999999999997754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.64  E-value=5.4e-05  Score=55.11  Aligned_cols=27  Identities=33%  Similarity=0.326  Sum_probs=24.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567899999999999999999998754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.63  E-value=5.6e-05  Score=55.20  Aligned_cols=28  Identities=25%  Similarity=0.222  Sum_probs=24.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus         3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         3 ADKGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578899999999999999999998754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.63  E-value=4.7e-05  Score=54.31  Aligned_cols=25  Identities=32%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .++.++.|.|++||||||+.+.|+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhC
Confidence            5677999999999999999999985

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.63  E-value=5.9e-05  Score=59.05  Aligned_cols=28  Identities=32%  Similarity=0.395  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.+++|.||+|+||||++..|+..+
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999998763

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.63  E-value=5.6e-05  Score=55.27  Aligned_cols=28  Identities=32%  Similarity=0.373  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         30 LRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3567899999999999999999997643

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.63  E-value=5.3e-05  Score=55.34  Aligned_cols=28  Identities=21%  Similarity=0.336  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          28 IKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.63  E-value=5.9e-05  Score=57.63  Aligned_cols=27  Identities=37%  Similarity=0.505  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|.|+|++||||||++..|+..+
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998765

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.62  E-value=5.6e-05  Score=55.31  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=24.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            577899999999999999999998754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.62  E-value=5.4e-05  Score=55.89  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=24.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.++.++.|.|++||||||+.+.|+..
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        23 VKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            357789999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=97.62  E-value=5.4e-05  Score=54.29  Aligned_cols=25  Identities=36%  Similarity=0.565  Sum_probs=19.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..+++.|+||||||++++.+..-+
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHhC
Confidence            4689999999999999999998755

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.62  E-value=6.2e-05  Score=52.78  Aligned_cols=27  Identities=19%  Similarity=0.361  Sum_probs=24.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            467799999999999999999998754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.62  E-value=5.9e-05  Score=49.20  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .|+|.|++||||||+.+.|....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998754

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK04296 thymidine kinase; Provisional

Probab=97.62  E-value=4.7e-05  Score=54.27  Aligned_cols=25  Identities=20%  Similarity=0.130  Sum_probs=22.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+++++|++|+||||++..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999998876

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.62  E-value=5.9e-05  Score=59.25  Aligned_cols=28  Identities=36%  Similarity=0.337  Sum_probs=25.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      .++.+|+|+|++||||||++..|...+.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            3678999999999999999999998875

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.62  E-value=6.4e-05  Score=55.79  Aligned_cols=35  Identities=20%  Similarity=0.093  Sum_probs=28.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc----CCeEeeh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST----QLRHINI   40 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l----~~~~~~~   40 (176)
                      ..++.++.|.||.||||||+.+.|+.-+    |-..++-
T Consensus        25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g   63 (258)
T COG1120          25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG   63 (258)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence            4678899999999999999999998855    4445543

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.62  E-value=5.1e-05  Score=55.17  Aligned_cols=23  Identities=43%  Similarity=0.651  Sum_probs=17.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+|.|||||||||+...++..+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            68899999999998777776665

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.61  E-value=5e-05  Score=58.39  Aligned_cols=26  Identities=42%  Similarity=0.649  Sum_probs=23.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....|+|+|++||||||+.++|....
T Consensus       143 ~~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        143 SRLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998865

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=97.61  E-value=0.00044  Score=53.00  Aligned_cols=106  Identities=19%  Similarity=0.272  Sum_probs=66.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCch---hhhcccccchHHHHHHHHHHhhcCCeEEc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWD---DELECHVINEDLVCDELEDIMEQGGNIVD   83 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~~i~~~~~~~~~vid   83 (176)
                      +...+++.|+.|+|||++++.|++. |+.++|+....+...- +...+   +.....+  +..|...+...-....++++
T Consensus       126 ~~~~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~hrGs~fG~~~~~~qpsq~~f--e~~L~~~l~~~~~~~~i~~e  202 (311)
T TIGR03167       126 PFPLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLANHRGSSFGALGLGPQPSQKRF--ENALAEALRRLDPGRPIFVE  202 (311)
T ss_pred             CCceeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHHhcCcccCCCCCCCCCchHHH--HHHHHHHHHhCCCCceEEEE
Confidence            3455679999999999999999765 8889998887766541 11111   1111111  44555555543333456775


Q ss_pred             CCCCCC----CCC-----CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           84 YHGCDF----FPE-----RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        84 ~~~~~~----~~~-----~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      .++...    +|.     .....+|+|++|.+.+.+|+.+ .|
T Consensus       203 ~es~~ig~~~~p~~l~~~m~~~~~i~i~~~~e~Rv~~l~~-~Y  244 (311)
T TIGR03167       203 DESRRIGRVALPDALFEAMRAAPLVELEASLEERVERLVE-EY  244 (311)
T ss_pred             eCchhhccccCCHHHHHHHhhCCEEEEECCHHHHHHHHHH-Hh
Confidence            443222    221     1233589999999999999985 55

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.61  E-value=5.8e-05  Score=56.29  Aligned_cols=28  Identities=32%  Similarity=0.337  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         24 LESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.61  E-value=0.0017  Score=56.33  Aligned_cols=26  Identities=35%  Similarity=0.645  Sum_probs=23.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..++|.|+||+|||++++.||..+
T Consensus       199 ~~~n~lL~G~pGvGKTal~~~la~~i  224 (821)
T CHL00095        199 TKNNPILIGEPGVGKTAIAEGLAQRI  224 (821)
T ss_pred             ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999976

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=6e-05  Score=55.68  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=24.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+++.|+..+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567899999999999999999998754

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.61  E-value=6.1e-05  Score=54.34  Aligned_cols=28  Identities=25%  Similarity=0.202  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          23 VKKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            3577899999999999999999997643

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.60  E-value=6.6e-05  Score=52.99  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        22 i~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          22 IEAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999997754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.60  E-value=6.2e-05  Score=55.20  Aligned_cols=28  Identities=25%  Similarity=0.252  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.60  E-value=6.7e-05  Score=51.84  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +++.++|+|++|+||||+.+.|....
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35899999999999999999997654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.60  E-value=6.5e-05  Score=53.91  Aligned_cols=28  Identities=25%  Similarity=0.252  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578899999999999999999997754

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.60  E-value=6.5e-05  Score=52.21  Aligned_cols=28  Identities=25%  Similarity=0.236  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++..+.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4577899999999999999999997654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00018  Score=62.36  Aligned_cols=30  Identities=37%  Similarity=0.491  Sum_probs=27.3

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+++.++++||||+|||.++++|+...
T Consensus       294 ~~itpPrgvL~~GppGTGkTl~araLa~~~  323 (1080)
T KOG0732|consen  294 FNITPPRGVLFHGPPGTGKTLMARALAAAC  323 (1080)
T ss_pred             cccCCCcceeecCCCCCchhHHHHhhhhhh
Confidence            467788999999999999999999999876

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.60  E-value=7.1e-05  Score=55.56  Aligned_cols=28  Identities=32%  Similarity=0.260  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          22 ISESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567899999999999999999998754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.60  E-value=6e-05  Score=56.03  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=23.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.++.++.|.|++||||||+.+.|+..
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         29 FEQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            356789999999999999999999853

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.60  E-value=6.2e-05  Score=55.21  Aligned_cols=28  Identities=21%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus         9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770         9 LKRGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578899999999999999999998754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.60  E-value=6.9e-05  Score=58.52  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=23.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..+|+|+||+||||||+.+.|...+
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998765

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.59  E-value=6.2e-05  Score=61.71  Aligned_cols=26  Identities=42%  Similarity=0.480  Sum_probs=23.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ..++|+||+|+||||+|+.|++.+++
T Consensus        39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         39 HAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35789999999999999999998754

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.59  E-value=6.5e-05  Score=54.62  Aligned_cols=28  Identities=29%  Similarity=0.370  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+...
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            3578899999999999999999998653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.59  E-value=6.4e-05  Score=55.81  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         26 IPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3567899999999999999999998753

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.59  E-value=6.3e-05  Score=56.21  Aligned_cols=28  Identities=18%  Similarity=0.190  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         36 IAKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3567899999999999999999998653

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.59  E-value=6.7e-05  Score=51.07  Aligned_cols=28  Identities=25%  Similarity=0.286  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3567899999999999999999997754

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.59  E-value=6.7e-05  Score=54.90  Aligned_cols=28  Identities=25%  Similarity=0.347  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          26 IKPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            3567789999999999999999998754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13764 ATPase; Provisional

Probab=97.59  E-value=6.5e-05  Score=62.14  Aligned_cols=28  Identities=43%  Similarity=0.636  Sum_probs=24.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      .+...|+|+|++||||||++++|++.+.
T Consensus       255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        255 ERAEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3467899999999999999999998763

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.59  E-value=6e-05  Score=64.55  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=23.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      ..++|+||+|+||||+|+.|++.+++.
T Consensus        39 HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         39 HAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            346899999999999999999998653

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.59  E-value=9e-05  Score=58.59  Aligned_cols=26  Identities=46%  Similarity=0.643  Sum_probs=23.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..++|+|+||+||||+++.+++.+
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998876

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.59  E-value=7e-05  Score=53.87  Aligned_cols=28  Identities=21%  Similarity=0.302  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          28 VPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            3578899999999999999999997754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.58  E-value=6.2e-05  Score=55.05  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|+|++||||||+.+.|+..+
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          30 VESGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3567899999999999999999998654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.58  E-value=6.9e-05  Score=54.99  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus         8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184         8 IQQGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4577899999999999999999998754

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=4.8e-05  Score=56.35  Aligned_cols=37  Identities=32%  Similarity=0.445  Sum_probs=32.5

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      +.++.+|+.+++.||||+|||.+|++-|...+..|+.
T Consensus       199 ~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK  235 (424)
T KOG0652|consen  199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK  235 (424)
T ss_pred             hcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH
Confidence            4677889999999999999999999999988777653

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.58  E-value=6.9e-05  Score=55.60  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         26 VKPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567899999999999999999998754

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.58  E-value=6.4e-05  Score=55.89  Aligned_cols=28  Identities=25%  Similarity=0.278  Sum_probs=24.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        26 LYPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.58  E-value=6e-05  Score=61.44  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=23.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ..++|+||||+||||+++.+++.+.+
T Consensus        37 ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         37 HAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            45699999999999999999998853

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.58  E-value=7.1e-05  Score=54.36  Aligned_cols=27  Identities=33%  Similarity=0.303  Sum_probs=23.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+.-+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.58  E-value=6.8e-05  Score=62.38  Aligned_cols=27  Identities=41%  Similarity=0.492  Sum_probs=24.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      +..++|+||+|+||||+|+.||+.+++
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC   63 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNC   63 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457799999999999999999999865

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=97.58  E-value=7.3e-05  Score=56.28  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=23.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      |++|.|+|.+|||||||+..|+..|
T Consensus         1 M~~i~i~G~~gSGKTTLi~~Li~~L   25 (274)
T PRK14493          1 MKVLSIVGYKATGKTTLVERLVDRL   25 (274)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999887

>PRK10908 cell division protein FtsE; Provisional

Probab=97.58  E-value=7.3e-05  Score=54.48  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         25 MRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.57  E-value=7.4e-05  Score=53.94  Aligned_cols=28  Identities=29%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         25 LAAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578899999999999999999998754

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.57  E-value=7.9e-05  Score=52.14  Aligned_cols=27  Identities=22%  Similarity=0.385  Sum_probs=24.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++..+.|.|++||||||+.+.|+..+
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            567899999999999999999998754

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.57  E-value=7.3e-05  Score=55.24  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          24 IAKGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3577899999999999999999998754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.57  E-value=7.2e-05  Score=52.89  Aligned_cols=28  Identities=25%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++..+.|.|++||||||+.+.|+..+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          23 VRAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567899999999999999999998754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.57  E-value=7.2e-05  Score=55.21  Aligned_cols=28  Identities=29%  Similarity=0.239  Sum_probs=24.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=97.57  E-value=7.2e-05  Score=54.91  Aligned_cols=28  Identities=21%  Similarity=0.303  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         22 VERGERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567899999999999999999998754

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.57  E-value=6.2e-05  Score=56.55  Aligned_cols=26  Identities=50%  Similarity=0.707  Sum_probs=23.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....|+|+|++||||||+.+.|.+.+
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i  151 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEI  151 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             cceEEEEECCCccccchHHHHHhhhc
Confidence            46799999999999999999999876

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.56  E-value=7.5e-05  Score=55.09  Aligned_cols=28  Identities=18%  Similarity=0.345  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         24 IDQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.56  E-value=7.6e-05  Score=53.91  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=24.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ...++|.|+|++||||||+.+.+.+.++
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3578999999999999999999988753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.56  E-value=7.6e-05  Score=55.76  Aligned_cols=28  Identities=29%  Similarity=0.292  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567899999999999999999998754

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=9.1e-05  Score=53.73  Aligned_cols=33  Identities=15%  Similarity=0.237  Sum_probs=27.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      ...+-+..|+||.||||||++..|+-.-+|.+.
T Consensus        27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt   59 (251)
T COG0396          27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT   59 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEe
Confidence            356678899999999999999999886655543

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.56  E-value=7.4e-05  Score=55.55  Aligned_cols=28  Identities=21%  Similarity=0.329  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++..+.|.|++||||||+.+.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        23 VAAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4577899999999999999999998754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.56  E-value=7.8e-05  Score=54.74  Aligned_cols=28  Identities=18%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++-++.|.|++||||||+.+.|+..+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          25 IPAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3567899999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.56  E-value=7.9e-05  Score=53.37  Aligned_cols=28  Identities=36%  Similarity=0.347  Sum_probs=24.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++..+.|.|+.||||||+.+.|+..+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        23 LNAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4577899999999999999999998754

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=9.3e-05  Score=56.63  Aligned_cols=31  Identities=35%  Similarity=0.485  Sum_probs=29.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      .|+.|+..||.|.|||-+|+.||+-.|+||+
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFi   79 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFI   79 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            4789999999999999999999998899997

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.55  E-value=7.7e-05  Score=56.03  Aligned_cols=27  Identities=19%  Similarity=0.259  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++-++.|.|++||||||+.+.|+..+
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            567899999999999999999998754

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=7.8e-05  Score=55.67  Aligned_cols=28  Identities=21%  Similarity=0.217  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         35 IPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3577899999999999999999998643

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.55  E-value=8e-05  Score=53.82  Aligned_cols=28  Identities=21%  Similarity=0.236  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999997654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.55  E-value=8e-05  Score=55.19  Aligned_cols=28  Identities=21%  Similarity=0.265  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        24 IPKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            4577899999999999999999998643

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.55  E-value=8.2e-05  Score=53.56  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         24 LNAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3577899999999999999999998754

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=8.1e-05  Score=55.34  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=24.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         27 FPENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3577899999999999999999998753

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=8.1e-05  Score=55.32  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=23.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.++.++.|.|++||||||+++.|+.-
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         28 FNQNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            356789999999999999999999763

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=97.55  E-value=8.1e-05  Score=54.78  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=24.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            567899999999999999999998754

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.55  E-value=0.00013  Score=45.39  Aligned_cols=31  Identities=42%  Similarity=0.493  Sum_probs=25.8

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc---CCeEeehh
Q 030477           11 NILVTGTPGTGKTTTSTALAEST---QLRHINIG   41 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~   41 (176)
                      +++++|..|+||||++..|+..+   |..++-.|
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            47899999999999999999987   66666555

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=8.1e-05  Score=55.36  Aligned_cols=28  Identities=18%  Similarity=0.209  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus        27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         27 IPQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3577899999999999999999998753

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=8.3e-05  Score=55.20  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=23.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..++.++.|.|++||||||+.+.|+.
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         26 IFKNQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhc
Confidence            35678999999999999999999985

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.55  E-value=8.9e-05  Score=57.69  Aligned_cols=26  Identities=42%  Similarity=0.608  Sum_probs=23.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..+|+|+||+||||||+.+.|...+
T Consensus       121 ~~g~ili~G~tGSGKTT~l~al~~~i  146 (343)
T TIGR01420       121 PRGLILVTGPTGSGKSTTLASMIDYI  146 (343)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            45789999999999999999998765

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=97.55  E-value=8e-05  Score=54.44  Aligned_cols=28  Identities=29%  Similarity=0.245  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+..+
T Consensus        45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          45 VPRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3567899999999999999999998743

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=97.55  E-value=6e-05  Score=55.18  Aligned_cols=22  Identities=41%  Similarity=0.696  Sum_probs=20.2

Q ss_pred             EEEECCCCCChHHHHHHHHHhc
Q 030477           12 ILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        12 I~l~G~~GsGKSTla~~La~~l   33 (176)
                      |+|.|+|||||||+.+.+.+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            6899999999999999999883

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.54  E-value=7.9e-05  Score=60.32  Aligned_cols=27  Identities=30%  Similarity=0.461  Sum_probs=23.7

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      +.-++++||+|+||||+|+.+|+.+++
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC   61 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCLNC   61 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHHcC
Confidence            347899999999999999999998754

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.00011  Score=57.80  Aligned_cols=35  Identities=29%  Similarity=0.352  Sum_probs=27.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGE   42 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~   42 (176)
                      ++..|+|.||.|+||||++..||..+   |  ..++++|.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt  279 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH  279 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence            56799999999999999999998765   2  34556554

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=97.54  E-value=0.0001  Score=57.00  Aligned_cols=34  Identities=32%  Similarity=0.652  Sum_probs=27.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG   41 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~   41 (176)
                      .-+.+++.||||+||||+|+.|+...   .+.|+.++
T Consensus       161 ~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS  197 (554)
T KOG2028|consen  161 RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS  197 (554)
T ss_pred             CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence            45678999999999999999998754   45566554

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=97.54  E-value=8.9e-05  Score=53.97  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=23.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+..+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          28 KPGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            567799999999999999999998754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
3iij_A	180	The Structure Of Hcinap-Adp Complex At 1.76 Angstro		3e-43
1rkb_A	173	The Structure Of Adrenal Gland Protein Ad-004 Lengt		4e-43
1y63_A	184	Initial Crystal Structural Analysis Of A Probable K		2e-26

>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms Resolution. Length = 180

Iteration: 1
 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 111/163 (68%)
Query: 10  PNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           PNIL+              LA  + L++IN+G+L RE+ L+DG+D+E +C +++ED V D
Sbjct: 12  PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 71
Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
           EL++ M +GG IVDYHGCDFFPERWF  V VL+T+ +VLY+RL  RGY   KLT+NI+CE
Sbjct: 72  ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 131
Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           IFQVL EEA  SY E+IV  L S+  E++  N+  +  W+  W
Sbjct: 132 IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 174

>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004 Length = 173

Iteration: 1
 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 111/163 (68%)
Query: 10  PNILVXXXXXXXXXXXXXALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           PNIL+              LA  + L++IN+G+L RE+ L+DG+D+E +C +++ED V D
Sbjct: 5   PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 64
Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
           EL++ M +GG IVDYHGCDFFPERWF  V VL+T+ +VLY+RL  RGY   KLT+NI+CE
Sbjct: 65  ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 124
Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           IFQVL EEA  SY E+IV  L S+  E++  N+  +  W+  W
Sbjct: 125 IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 167

>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase From Leishmania Major Friedlin Length = 184

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 30  AESTQLRHINIGELVREKNLHDGWDDELECHVI---NEDLVCDELEDIM-EQGGNIVDYH 85
           AE    +H+ +G+LV+E + +  +D EL+ H+I   +ED + D +E IM  +G ++VDYH
Sbjct: 32  AELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYH 91
Query: 86  GCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPED 145
             + FPERWF  VVVL T   VL++RLTKR Y+ AK   N+E EI  +  EEA+++Y +D
Sbjct: 92  SSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDD 151
Query: 146 IVLALKSDTIEDITRNI 162
           IVL  ++DT+E +   +
Sbjct: 152 IVLVRENDTLEQMAATV 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	3e-59
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	1e-58
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	7e-13
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	4e-11
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	5e-10
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	2e-07
2vli_A	183	Antibiotic resistance protein; transferase, tunica	2e-06
2chg_A	226	Replication factor C small subunit; DNA-binding pr	6e-05
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	6e-05
2chq_A	319	Replication factor C small subunit; DNA-binding pr	7e-05
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	9e-05
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	1e-04
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	1e-04
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	2e-04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	7e-04
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	7e-04

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score =  181 bits (461), Expect = 3e-59
 Identities = 90/172 (52%), Positives = 121/172 (70%)

Query: 1   MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECH 60
           +        PNIL+TGTPG GKTT    LA  + L++IN+G+L RE+ L+DG+D+E +C 
Sbjct: 3   LGSPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCP 62

Query: 61  VINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGA 120
           +++ED V DEL++ M +GG IVDYHGCDFFPERWF  V VL+T+ +VLY+RL  RGY   
Sbjct: 63  ILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEK 122

Query: 121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           KLT+NI+CEIFQVL EEA  SY E+IV  L S+  E++  N+  +  W+  W
Sbjct: 123 KLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 174

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score =  180 bits (457), Expect = 1e-58
 Identities = 71/176 (40%), Positives = 109/176 (61%), Gaps = 5/176 (2%)

Query: 5   SKRSRPNILVTGTPGTGKTTTSTALAE-STQLRHINIGELVREKNLHDGWDDELECHVIN 63
            +    NIL+TGTPGTGKT+ +  +A      +H+ +G+LV+E + +  +D EL+ H+I 
Sbjct: 6   EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIE 65

Query: 64  E---DLVCDELEDIM-EQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTG 119
           E   D + D +E IM  +G ++VDYH  + FPERWF  VVVL T   VL++RLTKR Y+ 
Sbjct: 66  EKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSE 125

Query: 120 AKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPR 175
           AK   N+E EI  +  EEA+++Y +DIVL  ++DT+E +   +  + + V   +  
Sbjct: 126 AKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEVLKVE 181

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 62.7 bits (152), Expect = 7e-13
 Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 16/165 (9%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE---KNLHDGWDDELECHVINEDLVC 68
            ++TG  G GK+TT   LA          G+++           W+ +    +  +++  
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64

Query: 69  DELEDIMEQGGNIVDYHGCDFFPERWFDR-----------VVVLQTENSVLYDRLTKRGY 117
             +  ++ Q   ++DY       E                 ++L T    L  R   R  
Sbjct: 65  LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124

Query: 118 TGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162
                   +  E+ +    +  +         L+   + DI +N+
Sbjct: 125 DEQMGERCL--ELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNL 167

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 58.0 bits (140), Expect = 4e-11
 Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 17/176 (9%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE---DLVC 68
           I+VTG P TGKTT S ALA   +L  ++            GW D      +      ++ 
Sbjct: 8   IIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLY 67

Query: 69  DELEDIMEQGGN-IVDYHGCDFFPERWFDR----------VVVLQTENSVLYDRLTKRGY 117
                I++ G + I++ +                       +       VL +R+  R  
Sbjct: 68  HTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127

Query: 118 TGAKLTNNIECEIFQVLLEEAKESYPEDIVLA---LKSDTIEDITRNIAILTDWVR 170
            GA+   + +      L           + L    L  DT      ++  +  WVR
Sbjct: 128 QGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVR 183

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 55.1 bits (132), Expect = 5e-10
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 15/163 (9%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE-----DL 66
           +L++G PG+GK+T + ALA    +  ++         +  G  D        +      +
Sbjct: 12  LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQI 71

Query: 67  VCDELEDIMEQGGN-IVDYHGCDFFPERWFD-----RVVVLQTENSVLYDRLTKRGYTGA 120
             D      ++G   I+D      +   +         +VL+T  +   +R   RG    
Sbjct: 72  AADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131

Query: 121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIA 163
                +     Q     A     E  VL +     +   ++  
Sbjct: 132 SDPLVVADLHSQFADLGA----FEHHVLPVSGKDTDQALQSAI 170

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 26/133 (19%)

Query: 8   SRPNILVTGTPGTGKTTTSTALAES-----TQLRHINIGELVREKNLHDGW---DDELEC 59
               ++VTG PG G TT+S    ++        + ++ G ++ E    +      D++  
Sbjct: 2   KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK 61

Query: 60  HVINED-----LVCDELEDIMEQGGNIVDYHGCDFFPERWF-------------DRVVVL 101
                      +   ++ ++ ++    VD H     P+ +              D ++V+
Sbjct: 62  MDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVV 121

Query: 102 QTENSVLYDRLTK 114
           +T    +  R   
Sbjct: 122 ETTGDEILMRRMS 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 7e-08
 Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 67/216 (31%)

Query: 7   RSRPNILVTGTPGTGKT--TTSTALAESTQLRH------INIGE-------LVREKNLH- 50
           R   N+L+ G  G+GKT       L+   Q +       +N+         L   + L  
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 51  --DGWDDELECHVINEDLVCDELED-----IMEQGGN----IVDYHGCDFFPERW--FD- 96
             D        H  N  L    ++      +  +       ++  +  +   + W  F+ 
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQN--AKAWNAFNL 264

Query: 97  --RVVVLQTENSVLYDRLT------------KRGYTGAK----LTNNIECEIFQVLLEEA 138
             ++++  T    + D L+                T  +    L   ++C     L  E 
Sbjct: 265 SCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREV 322

Query: 139 KESYPEDIVLALKSDTIEDITRNI-AILTDWVRNWQ 173
             + P    L++           I   + D +  W 
Sbjct: 323 LTTNP--RRLSI-----------IAESIRDGLATWD 345

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 29/133 (21%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRH-----INIGELVRE----KNLHDGWDDELECHVI 62
            +VTG PG GK+T    + E    +      IN G+ +             D+  +  V 
Sbjct: 4   GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63

Query: 63  NEDLV-------CDELEDIMEQGGNIVDYHGCDFFPERWF-------------DRVVVLQ 102
            +  +         E      +G   +D H     P  +                + +L+
Sbjct: 64  KQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLE 123

Query: 103 TENSVLYDRLTKR 115
            +  ++  R  + 
Sbjct: 124 ADPKIILSRQKRD 136

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 24/179 (13%), Positives = 48/179 (26%), Gaps = 21/179 (11%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE--KNLHDGWDDELECHVINEDLVCD 69
           I + G  G GKT T+  L E      +   E + +  + L  G+  + + H +   L+ D
Sbjct: 8   IWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLD 67

Query: 70  ELEDIMEQGGNIV------------DYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGY 117
            L+    +    +                              L    +V+ +RL + G 
Sbjct: 68  ALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQ 127

Query: 118 TGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQPRS 176
               +    +                    +       + +   IA          P+ 
Sbjct: 128 PQVNVGTVEDR-------LNELRGEQFQTHIDTAGLGTQQVAEQIAAQVGLTLAPPPQG 179

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN 48
          P++L +G PGTGKT T+ ALA    L   N  +   E N
Sbjct: 39 PHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMN 75

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 2   AQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHV 61
           A   +R   +I+V G  G+GK++   A+AE+     I    L   +N         E   
Sbjct: 11  AAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----IRKMSEGIP 66

Query: 62  INEDLVCDELEDIMEQGGNIVDYH-GCDFFPERWFDR----------VVVLQTENSVLYD 110
           + +D     L  I E+  +       C      + D+           V L    SVL +
Sbjct: 67  LTDDDRWPWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAE 126

Query: 111 RLTKR 115
           R+  R
Sbjct: 127 RMHHR 131

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN 48
          P++L +G PGTGKT T+ ALA    L   N  +   E N
Sbjct: 39 PHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMN 75

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 2  AQDSKRSRPNILVTGTPGTGKTTTSTALA 30
           +D        ++ G PG GKTT +  +A
Sbjct: 70 GKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 36/177 (20%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHI---------NIGELVREKNLHDGWDDELECHVI 62
           I++ G     K+T +  L++  +   I         +  E + E       +D       
Sbjct: 4   IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDN------ 57

Query: 63  NEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFD----------RVVVLQTENSVLYDRL 112
              ++ D                      ER             +VV L  + SV+  RL
Sbjct: 58  ---VIIDRFVYSNLVYAKKF--KDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRL 112

Query: 113 TKRG--YTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTD 167
             RG  Y   K  ++    I ++  E    +            + ++I ++I  L +
Sbjct: 113 RVRGDEYIEGKDIDS----ILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVE 165

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN 48
          P++L  G PG GKTT + ALA   +L   N      E N
Sbjct: 47 PHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELN 83

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 28/181 (15%), Positives = 62/181 (34%), Gaps = 27/181 (14%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE------- 64
           IL+TG PG+GK+  +  L E    + I + ++VR++   +    E               
Sbjct: 4   ILITGMPGSGKSEFAKLLKER-GAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD 62

Query: 65  DLVCDELEDIMEQGGN---IVD----YHGCDFFPERWFDRVVVLQTENS--VLYDRLTKR 115
            +V     + +    +   + D        + F     D V ++   +   + Y R+ +R
Sbjct: 63  GVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIER 122

Query: 116 G-----YTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI-AILTDWV 169
                    ++L      E+   + E    +   D ++       E+  R    +    +
Sbjct: 123 LRSDDSKEISELIRRDREELKLGIGEVIAMA---DYII-TNDSNYEEFKRRCEEVTDRVL 178

Query: 170 R 170
           +
Sbjct: 179 K 179

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 1  MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH 50
           +  +     +++V G  G+GKTT +  +A+ T L           +N+ 
Sbjct: 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIA 70

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Length = 189

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 11 NILVTGTPGTGKTTTSTALAESTQLRHINIG----ELVREKNLHDGWD 54
          ++ +TG PG GKTT     +E  +   + +     E VR+     G+D
Sbjct: 3  HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFD 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.96
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.96
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.89
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.85
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.85
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.84
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.83
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.82
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.82
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.81
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.81
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.81
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.81
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.8
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.8
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.8
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.8
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.8
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.8
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.79
1via_A	175	Shikimate kinase; structural genomics, transferase	99.79
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.79
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.79
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.78
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.77
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.77
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.77
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.77
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.77
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.77
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.77
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.77
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.76
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.76
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.76
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.76
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.74
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.74
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.74
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.74
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.74
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.73
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.72
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.71
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.71
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.71
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.7
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.7
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.69
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.68
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.68
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.68
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.68
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.68
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.67
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.67
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.67
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.66
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.66
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.65
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.65
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.64
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.64
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.64
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.63
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.63
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.63
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.63
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.63
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.62
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.62
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.62
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.62
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.58
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.56
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.55
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.54
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.51
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.51
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.48
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.46
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.45
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.45
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.44
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.44
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.44
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.43
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.42
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.39
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.36
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.36
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.35
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.35
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.34
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.34
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.32
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.28
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.28
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.27
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	99.23
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.22
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.19
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.17
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.14
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.14
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.12
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.12
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.09
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.05
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.04
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.01
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.0
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.0
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.97
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.97
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.95
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.95
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.95
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	98.89
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.88
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.87
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.85
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.82
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.81
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.78
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.78
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.78
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.71
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.69
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	98.67
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.64
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.63
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	98.6
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.6
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.59
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.58
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.54
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.49
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.46
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.45
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.45
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.43
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.41
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.37
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.37
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.36
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.35
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.34
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	98.33
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	98.32
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.31
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.3
3bos_A	242	Putative DNA replication factor; P-loop containing	98.29
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.28
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.27
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	98.26
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	98.26
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.24
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	98.23
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.22
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.22
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.22
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	98.21
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.21
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.19
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.19
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.18
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.17
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.17
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.15
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.15
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.15
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.14
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.14
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.12
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.12
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.12
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.11
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.11
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.11
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.11
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.11
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.1
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.1
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.09
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.09
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.08
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.06
3pvs_A	447	Replication-associated recombination protein A; ma	98.04
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	98.02
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.02
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.01
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.99
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.98
3co5_A	143	Putative two-component system transcriptional RES	97.97
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.97
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.96
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.95
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.95
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.94
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.94
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.92
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.92
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.9
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.89
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.89
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.89
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	97.89
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.89
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.89
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.88
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.88
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.86
2qgz_A	308	Helicase loader, putative primosome component; str	97.85
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.84
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.83
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.82
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.82
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.82
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.81
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.8
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.8
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.79
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.77
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.76
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.76
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.75
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.73
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.73
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.73
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.73
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.73
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.73
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.72
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.71
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.69
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.69
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.69
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.68
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.68
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.68
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.68
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.67
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.67
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.67
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.67
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.67
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.67
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.66
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.66
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.66
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.66
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.66
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.66
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.66
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.66
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.65
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.65
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.65
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.64
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.64
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.64
1g6h_A	257	High-affinity branched-chain amino acid transport	97.64
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.62
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.61
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.61
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.6
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.6
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.59
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.58
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.58
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.57
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.57
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.57
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.57
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.57
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.57
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.57
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.56
2og2_A	359	Putative signal recognition particle receptor; nuc	97.56
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.56
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.56
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.55
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.55
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.54
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.54
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.53
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.53
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.52
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.52
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.51
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.51
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.5
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.49
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.48
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.48
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.47
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.47
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.47
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.46
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.45
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.45
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.45
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.44
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.44
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.44
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.43
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.43
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.43
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.42
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.42
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.42
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.41
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.41
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.41
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.4
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.4
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.4
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.4
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.39
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.39
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.39
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.39
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.39
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.38
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.37
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.36
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.36
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.36
2fna_A	357	Conserved hypothetical protein; structural genomic	97.35
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.35
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.35
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.34
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.33
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.33
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.33
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.33
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.33
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.32
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	97.32
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.31
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.31
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.31
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.31
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.31
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.3
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.29
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.28
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.28
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.28
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.27
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.26
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.25
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.24
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.23
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.23
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.23
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.23
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.23
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.23
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.22
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.21
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.21
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.2
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.19
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.18
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	97.18
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.17
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.17
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.17
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.17
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.16
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.16
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.16
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.16
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.16
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.15
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.15
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.15
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.14
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.14
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.13
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.13
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.12
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.12
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.12
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.11
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.11
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.1
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.1
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.1
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.1
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.09
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.08
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.08
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.07
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.06
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.06
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.05
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.04
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.04
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.04
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.04
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.03
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.03
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.03
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.02
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.02
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.02
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.02
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.01
2xxa_A	433	Signal recognition particle protein; protein trans	97.01
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.01
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.99
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.99
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.99
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.99
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.99
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.97
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.96
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.95
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.94
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.94
3io5_A	333	Recombination and repair protein; storage dimer, i	96.94
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.94
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.93
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.93
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.93
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.93
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	96.93
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.93
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.93
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.91
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.9
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.9
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.9
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.89
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.88
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.87
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.87
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.87
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.87
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.87
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.86
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.86
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.85
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.85
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.85
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.85
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.85
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.85
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.84
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.84
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.83
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.83
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.83
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.82
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.82
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.81
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	96.81
3ice_A	422	Transcription termination factor RHO; transcriptio	96.81
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	96.8
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.8
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.8
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.79
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.79
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.78
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.78
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.78
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.77
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.77
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.76
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.75
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.75
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.73
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.71
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.71

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.96  E-value=1e-28  Score=173.55  Aligned_cols=171  Identities=53%  Similarity=0.957  Sum_probs=137.5

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEE
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIV   82 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vi   82 (176)
                      .+.++++++|+|+|+|||||||+++.|++.+|+.+++.|++++....+..++......++.++.+.+.+...+..+++|+
T Consensus         5 ~~~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vv   84 (180)
T 3iij_A            5 SPEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIV   84 (180)
T ss_dssp             -CTTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEEE
T ss_pred             CcccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCCEEE
Confidence            34456778999999999999999999999999999999999887755544444444444556667777777776788889


Q ss_pred             cCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHH
Q 030477           83 DYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI  162 (176)
Q Consensus        83 d~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i  162 (176)
                      +......++..+++.+|||++|++++.+|+.+|++..+...+....+.+...+.++.+.|..+.++++++.+++++.+.+
T Consensus        85 ~~~~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~i~~~~~~~~ev~~~v  164 (180)
T 3iij_A           85 DYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNV  164 (180)
T ss_dssp             ECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHHHHH
T ss_pred             EechhhhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEcCCCCHHHHHHHH
Confidence            88877788776678999999999999999999987655554444445677778888888888889999988999999999


Q ss_pred             HHHHHHHHhhc
Q 030477          163 AILTDWVRNWQ  173 (176)
Q Consensus       163 ~~~~~~~~~~~  173 (176)
                      .+++++++.|.
T Consensus       165 ~~i~~~l~~~~  175 (180)
T 3iij_A          165 DQILKWIEQWI  175 (180)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988875

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.96  E-value=1.6e-27  Score=168.10  Aligned_cols=170  Identities=42%  Similarity=0.739  Sum_probs=126.3

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHh-cCCeEeehhHHHhhcccCCCchhhhccccc---chHHHHHHHHHHh-hcCC
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAES-TQLRHINIGELVREKNLHDGWDDELECHVI---NEDLVCDELEDIM-EQGG   79 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~i~~~~-~~~~   79 (176)
                      .++++++|+|+|+|||||||+++.|++. +|++++++|++.+.......+++.+...++   .++.+++.++..+ ..++
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g~   85 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGN   85 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccCC
Confidence            3456789999999999999999999999 799999999999887665555555554454   4455566666655 5567


Q ss_pred             eEEcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHH
Q 030477           80 NIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDIT  159 (176)
Q Consensus        80 ~vid~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~  159 (176)
                      ++++......++...++.+|||++|++++.+|+.+|++..+........+.+.....++.+.|..+.++++|+.+++++.
T Consensus        86 ~vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~~~~vi~~n~~~~~~~~  165 (184)
T 1y63_A           86 HVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMA  165 (184)
T ss_dssp             EEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHH
T ss_pred             EEEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhccCcEEECCCCCHHHHH
Confidence            88887766667655567899999999999999999876544443333233345556666777876678888888999999


Q ss_pred             HHHHHHHHHHHhhcc
Q 030477          160 RNIAILTDWVRNWQP  174 (176)
Q Consensus       160 ~~i~~~~~~~~~~~~  174 (176)
                      +.+.++++++..|..
T Consensus       166 ~~v~~i~~~l~~~~~  180 (184)
T 1y63_A          166 ATVEEIRERVEVLKV  180 (184)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.89  E-value=1.8e-22  Score=145.25  Aligned_cols=161  Identities=22%  Similarity=0.342  Sum_probs=107.9

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh-
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM-   75 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~-   75 (176)
                      ...+.++++|+|.|||||||+|+|+.|++++|+++++++++++..... ...+.....+     +...+.+.+.+...+ 
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~  102 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMI  102 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence            345678889999999999999999999999999999999999875322 2223222222     123344444444322 


Q ss_pred             ----hcCCeEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHH
Q 030477           76 ----EQGGNIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEE  137 (176)
Q Consensus        76 ----~~~~~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~  137 (176)
                          ...++|+|     +||++            .++.+|+|++|.+++.+|+..|.....+..++.+  ..++..+.++
T Consensus       103 ~~~~~~~g~ilD-----GfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~  177 (217)
T 3umf_A          103 KLVDKNCHFLID-----GYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNEL  177 (217)
T ss_dssp             HHTTTCSEEEEE-----TBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHH
T ss_pred             hccccccCcccc-----cCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHH
Confidence                34579999     77774            3678999999999999999988643333332222  2344444443


Q ss_pred             H---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477          138 A---KESYPE-DIVLALKSD-TIEDITRNIAILTDW  168 (176)
Q Consensus       138 ~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~  168 (176)
                      .   .+.|.. +.++.+|+. ++++|.+.|..+++.
T Consensus       178 t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          178 TKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             THHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            3   335655 567778876 899999999888763

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.85  E-value=1.5e-20  Score=134.51  Aligned_cols=153  Identities=23%  Similarity=0.417  Sum_probs=105.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh-hcCCeEE
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM-EQGGNIV   82 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~-~~~~~vi   82 (176)
                      ++|+|.|||||||+|+|+.|++++|++++++++++|.... ....+.....+     +...+.+.+.+...+ ...++++
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~il   80 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIF   80 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEe
Confidence            4789999999999999999999999999999999987532 12222222111     234566677777655 4468999


Q ss_pred             cCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCc--------------------cccchh
Q 030477           83 DYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGA--------------------KLTNNI  126 (176)
Q Consensus        83 d~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~--------------------~~~~~~  126 (176)
                      |     +||++                .++.|++|++|.+++.+|+..|.....                    +..++.
T Consensus        81 D-----GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~  155 (206)
T 3sr0_A           81 D-----GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP  155 (206)
T ss_dssp             E-----SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred             c-----CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence            9     77774                357899999999999999998842110                    111111


Q ss_pred             H--HHHHHHHHHHHH---hcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477          127 E--CEIFQVLLEEAK---ESYPE-DIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       127 ~--~~~~~~~~~~~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                      +  ..++..+.++..   +.|.+ +.++.+|+. ++++|.+.|..++.
T Consensus       156 e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~  203 (206)
T 3sr0_A          156 EVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG  203 (206)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            1  124444444432   34555 567778775 89999999988874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=1.6e-20  Score=133.72  Aligned_cols=161  Identities=17%  Similarity=0.173  Sum_probs=101.4

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh----cccccchHHHHHHHHHHhhcCCe
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL----ECHVINEDLVCDELEDIMEQGGN   80 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~   80 (176)
                      .|.++.+|+|+|+|||||||+++.|++.+|+++++.|++...... .....-+    ...+.  ..-...+..+....++
T Consensus        21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g-~~i~~~~~~~~~~~~~--~~e~~~l~~l~~~~~~   97 (199)
T 3vaa_A           21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFR--ELERNMLHEVAEFENV   97 (199)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHH--HHHHHHHHHHTTCSSE
T ss_pred             ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC-CcHHHHHHhcChHHHH--HHHHHHHHHHhhcCCc
Confidence            345778999999999999999999999999999999998765421 1111100    00000  1112223334455677


Q ss_pred             EEcCCCCCCCCCC------cccEEEEEeCChHHHHHHHh-hcCCCCccccchhH---HHHHHHHHHHHHhcCCC-CcEEE
Q 030477           81 IVDYHGCDFFPER------WFDRVVVLQTENSVLYDRLT-KRGYTGAKLTNNIE---CEIFQVLLEEAKESYPE-DIVLA  149 (176)
Q Consensus        81 vid~~~~~~~~~~------~~~~vi~l~~~~~~~~~R~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~i~  149 (176)
                      |++..........      ..+.+|||++|++++.+|+. .|. .++.......   .+.+..++..+.+.|.. +.+|+
T Consensus        98 vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~-~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Id  176 (199)
T 3vaa_A           98 VISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQ-QRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFN  176 (199)
T ss_dssp             EEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGG-GCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred             EEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCC-CCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEE
Confidence            7763221111111      25789999999999999998 442 2233222111   34567777777777766 56677


Q ss_pred             ecCCCHHHHHHHHHHHHHHH
Q 030477          150 LKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       150 ~~~~s~~ev~~~i~~~~~~~  169 (176)
                      +++.+++++.+.|...++.+
T Consensus       177 t~~~s~ee~~~~I~~~l~~~  196 (199)
T 3vaa_A          177 ADELEDRWQIESSVQRLQEL  196 (199)
T ss_dssp             CCCCSSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            76668999988888877654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.84  E-value=5.8e-20  Score=130.09  Aligned_cols=162  Identities=17%  Similarity=0.284  Sum_probs=98.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHH----HHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDL----VCDELEDIM   75 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~----l~~~i~~~~   75 (176)
                      |.++++|+|+|+|||||||+++.|++++|+++++.|++++.... ....+......     ....+.    +.+.+....
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~   85 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV   85 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc
Confidence            56788999999999999999999999999999999998876421 11111111111     111122    223333333


Q ss_pred             -hcCCeEEcCCCCCC---------CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHHHh---
Q 030477           76 -EQGGNIVDYHGCDF---------FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEAKE---  140 (176)
Q Consensus        76 -~~~~~vid~~~~~~---------~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~---  140 (176)
                       .++++|+|......         +  ..++.+|||++|++++.+|+..|+...++.....+  ..++..++....+   
T Consensus        86 ~~~~~vi~d~~~~~~~~~~~~~~~~--~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  163 (196)
T 2c95_A           86 NTSKGFLIDGYPREVQQGEEFERRI--GQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIA  163 (196)
T ss_dssp             TTCSCEEEESCCCSHHHHHHHHHHT--CCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHH
T ss_pred             ccCCcEEEeCCCCCHHHHHHHHHhc--CCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             34678888522110         1  23678999999999999999988643333322111  2234444433322   


Q ss_pred             cCCC-CcEEEecC-CCHHHHHHHHHHHHHHH
Q 030477          141 SYPE-DIVLALKS-DTIEDITRNIAILTDWV  169 (176)
Q Consensus       141 ~~~~-~~~i~~~~-~s~~ev~~~i~~~~~~~  169 (176)
                      .|.. +.++.+++ .+++++.+.|..+++.+
T Consensus       164 ~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~  194 (196)
T 2c95_A          164 FYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL  194 (196)
T ss_dssp             HHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            2332 34444444 48999999988887643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.83  E-value=1.1e-19  Score=128.16  Aligned_cols=159  Identities=14%  Similarity=0.220  Sum_probs=89.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCCCc---hhhhcccccch-H----HHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHDGW---DDELECHVINE-D----LVCDELEDI   74 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~----~l~~~i~~~   74 (176)
                      ++++|+|+|+|||||||+++.|++++|     +++++.+++++........   ..+...+.... .    .+.+.+...
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   81 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEM   81 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhh
Confidence            457999999999999999999999998     9999999887654211111   01111110111 1    112223333


Q ss_pred             hhcCCeEEcCCCC-----CC--------CCCCcccEEEEEeCChHHHHH-HHhh--cCCCCccccchhHHHHHHHHHHHH
Q 030477           75 MEQGGNIVDYHGC-----DF--------FPERWFDRVVVLQTENSVLYD-RLTK--RGYTGAKLTNNIECEIFQVLLEEA  138 (176)
Q Consensus        75 ~~~~~~vid~~~~-----~~--------~~~~~~~~vi~l~~~~~~~~~-R~~~--r~~~~~~~~~~~~~~~~~~~~~~~  138 (176)
                      ..++.+|+|....     ..        +....++.+|||++|++++.+ |+..  |++.............+...+...
T Consensus        82 ~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~~~~  161 (192)
T 1kht_A           82 AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMS  161 (192)
T ss_dssp             HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHHHHH
Confidence            4556788886432     10        111125789999999999996 9987  654222211111112233333333


Q ss_pred             HhcCCCCcEEEecCC--CHHHHHHHHHHHH
Q 030477          139 KESYPEDIVLALKSD--TIEDITRNIAILT  166 (176)
Q Consensus       139 ~~~~~~~~~i~~~~~--s~~ev~~~i~~~~  166 (176)
                      .+.|....++.+++.  +++++.+.|..++
T Consensus       162 ~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          162 YGVLTGATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            333433333444333  4888888777654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.82  E-value=1.3e-19  Score=128.50  Aligned_cols=163  Identities=17%  Similarity=0.258  Sum_probs=95.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHH----HHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDE----LEDIM   75 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~----i~~~~   75 (176)
                      |.++++|+|+|+|||||||+++.|++++|+++++.|++++.... ....+.....     .....+.+...    +....
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~   88 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL   88 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc
Confidence            34568999999999999999999999999999999998765431 1111111110     01112222222    32222


Q ss_pred             -hcCCeEEcCCCCC-----CCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHHHh---cC
Q 030477           76 -EQGGNIVDYHGCD-----FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEAKE---SY  142 (176)
Q Consensus        76 -~~~~~vid~~~~~-----~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~---~~  142 (176)
                       .+.++|+|.....     .+..  ..++.+|||++|++++.+|+..|+....+..+..+  ..++..++....+   .|
T Consensus        89 ~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  168 (199)
T 2bwj_A           89 GDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYY  168 (199)
T ss_dssp             TSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             3457888842211     0110  13678999999999999999988753233221111  1222233333322   34


Q ss_pred             CC-CcEEEecC-CCHHHHHHHHHHHHHH
Q 030477          143 PE-DIVLALKS-DTIEDITRNIAILTDW  168 (176)
Q Consensus       143 ~~-~~~i~~~~-~s~~ev~~~i~~~~~~  168 (176)
                      .. +.++.+++ .+++++.+.|..+++.
T Consensus       169 ~~~~~~~~id~~~~~e~v~~~i~~~l~~  196 (199)
T 2bwj_A          169 ETKTQLHKINAEGTPEDVFLQLCTAIDS  196 (199)
T ss_dssp             HHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            32 33344444 4899999998887764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.82  E-value=2.3e-19  Score=131.55  Aligned_cols=157  Identities=21%  Similarity=0.378  Sum_probs=101.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhcc-----cccchHHHHHHHHHHh----
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELEC-----HVINEDLVCDELEDIM----   75 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~i~~~~----   75 (176)
                      +.++++|+|+|+|||||||+++.|++++|+++++.+++++.... ....+.....     .+...+.+...+...+    
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~  105 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ  105 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence            45778999999999999999999999999999999999987532 2222222211     1223344455555433    


Q ss_pred             hcCCeEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCC------------c-------
Q 030477           76 EQGGNIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTG------------A-------  120 (176)
Q Consensus        76 ~~~~~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~------------~-------  120 (176)
                      .+.++++|.     +++.                .++.+|+|++|++++.+|+.+|+...            +       
T Consensus       106 ~~~~~ildg-----~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~  180 (243)
T 3tlx_A          106 CKKGFILDG-----YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDD  180 (243)
T ss_dssp             GSSEEEEES-----CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCT
T ss_pred             ccCCEEecC-----CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccc
Confidence            246789984     3331                26789999999999999999885210            0       


Q ss_pred             --------cccchh--HHHHHHHHHHHHH---hcCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477          121 --------KLTNNI--ECEIFQVLLEEAK---ESYPE-DIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       121 --------~~~~~~--~~~~~~~~~~~~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                              +..+..  -..++..+..+..   +.|.. +.++.+++. +++++.+.|..+++
T Consensus       181 ~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          181 VTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             TTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence                    111111  1224444444322   23433 467777765 89999999887764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.81  E-value=1.1e-18  Score=124.17  Aligned_cols=157  Identities=24%  Similarity=0.330  Sum_probs=94.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhccc-----ccchHHHHHHHHHH----hh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECH-----VINEDLVCDELEDI----ME   76 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~i~~~----~~   76 (176)
                      .++++|+|+|+|||||||+++.|++++|+++++.|++++... .....+.....+     ....+.....+.+.    ..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~   97 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA   97 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcccC
Confidence            456799999999999999999999999999999999887632 111111111111     11122233333332    24


Q ss_pred             cCCeEEcCCCCC---------CCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH---HhcC
Q 030477           77 QGGNIVDYHGCD---------FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA---KESY  142 (176)
Q Consensus        77 ~~~~vid~~~~~---------~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~  142 (176)
                      ++++|+|.....         .+..  ..++.+|||++|++++.+|+.+|++...  ....-..++..+....   .+.|
T Consensus        98 ~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~--~~e~~~~r~~~~~~~~~~~~~~~  175 (201)
T 2cdn_A           98 ANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADD--TDDVILNRMKVYRDETAPLLEYY  175 (201)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTC--SHHHHHHHHHHHHHHTTTHHHHT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHhhHHHHHHh
Confidence            567899843211         0110  1267899999999999999998864321  1111112333333332   1344


Q ss_pred             CCCcEEEecC-CCHHHHHHHHHHHH
Q 030477          143 PEDIVLALKS-DTIEDITRNIAILT  166 (176)
Q Consensus       143 ~~~~~i~~~~-~s~~ev~~~i~~~~  166 (176)
                      . ..++.+++ .+++++.+.|..++
T Consensus       176 ~-~~~~~Id~~~~~eev~~~I~~~l  199 (201)
T 2cdn_A          176 R-DQLKTVDAVGTMDEVFARALRAL  199 (201)
T ss_dssp             T-TTEEEEECCSCHHHHHHHHHHHT
T ss_pred             c-CcEEEEeCCCCHHHHHHHHHHHH
Confidence            3 33444554 48998888887654

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.81  E-value=5.6e-19  Score=127.35  Aligned_cols=109  Identities=19%  Similarity=0.366  Sum_probs=72.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh----hc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM----EQ   77 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~   77 (176)
                      ++++|+|+|+|||||||+++.|++++|+++++.|++++.... ....+.....+     ....+.+.+.+...+    .+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~   83 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV   83 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence            457899999999999999999999999999999999876522 12222221111     122233333333322    35


Q ss_pred             CCeEEcCCCCC---------CCCC--CcccEEEEEeCChHHHHHHHhhcC
Q 030477           78 GGNIVDYHGCD---------FFPE--RWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        78 ~~~vid~~~~~---------~~~~--~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      +++|+|.....         .+..  ..++.+|||++|++++.+|+..|+
T Consensus        84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  133 (217)
T 3be4_A           84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC  133 (217)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            68899942111         0000  135789999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.81  E-value=1.3e-18  Score=122.67  Aligned_cols=160  Identities=18%  Similarity=0.278  Sum_probs=94.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhccc-----ccchHHHHHHHHHHh---hcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECH-----VINEDLVCDELEDIM---EQGG   79 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~i~~~~---~~~~   79 (176)
                      +++|+|+|+|||||||+++.|++++|+++++.|++++... .....+.....+     ....+.....+...+   .+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~   85 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKN   85 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence            4689999999999999999999999999999999877653 222222221111     111222333333332   3457


Q ss_pred             eEEcCCCCC-----CC----CC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchh--HHHHHHHHHHHHH---hcCC-
Q 030477           80 NIVDYHGCD-----FF----PE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI--ECEIFQVLLEEAK---ESYP-  143 (176)
Q Consensus        80 ~vid~~~~~-----~~----~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~-  143 (176)
                      +|+|.....     .+    .. ..++.+|||++|++++.+|+..|+....+..+..  -..++..++....   +.|. 
T Consensus        86 vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~  165 (194)
T 1qf9_A           86 FLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNK  165 (194)
T ss_dssp             EEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             EEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            888842111     01    10 1367899999999999999998864222222111  1123333332222   2232 


Q ss_pred             CCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477          144 EDIVLALKS-DTIEDITRNIAILTDW  168 (176)
Q Consensus       144 ~~~~i~~~~-~s~~ev~~~i~~~~~~  168 (176)
                      .+.++.+++ .+++++.+.|..+++.
T Consensus       166 ~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          166 FDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             TTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            233333443 5899999998887754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.81  E-value=7.6e-19  Score=125.17  Aligned_cols=160  Identities=18%  Similarity=0.324  Sum_probs=95.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc--cCCCchhhhccc-----ccch----HHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN--LHDGWDDELECH-----VINE----DLVCDELEDIM   75 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~----~~l~~~i~~~~   75 (176)
                      .++++|+|+|+|||||||+++.|++++|+++++.|++++...  ....+++....+     ....    ..+.+.+...+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l   92 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNV   92 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhh
Confidence            356789999999999999999999999999999999887542  222222211111     1111    22333444444


Q ss_pred             hc--CCeEEcCCCCC---------CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHHHh--
Q 030477           76 EQ--GGNIVDYHGCD---------FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEAKE--  140 (176)
Q Consensus        76 ~~--~~~vid~~~~~---------~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~--  140 (176)
                      ..  .++++|.....         .+.  .++.+|||++|++++.+|+.+|+...+...+..+  ..++..+.....+  
T Consensus        93 ~~g~~~~i~dg~~~~~~~~~~~~~~~~--~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~  170 (203)
T 1ukz_A           93 KANKHKFLIDGFPRKMDQAISFERDIV--ESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI  170 (203)
T ss_dssp             HTTCCEEEEETCCCSHHHHHHHHHHTC--CCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHhcC--CCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence            33  36788743110         111  2678999999999999999887531112111111  1233333332222  


Q ss_pred             -cCC-CCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477          141 -SYP-EDIVLALKS-DTIEDITRNIAILTDW  168 (176)
Q Consensus       141 -~~~-~~~~i~~~~-~s~~ev~~~i~~~~~~  168 (176)
                       .|. .+.++.+++ .+++++.+.|..+++.
T Consensus       171 ~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          171 EYFETKSKVVRVRCDRSVEDVYKDVQDAIRD  201 (203)
T ss_dssp             HHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence             232 245555544 4899999998887753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.80  E-value=8.3e-19  Score=126.61  Aligned_cols=159  Identities=17%  Similarity=0.279  Sum_probs=96.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh-----h
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM-----E   76 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~-----~   76 (176)
                      ++++|+|+|+|||||||+++.|++++|+++++.|++++.... ....+.....+     ....+.+...+...+     .
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~   82 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC   82 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence            567899999999999999999999999999999999886421 11122211111     122233334443332     3


Q ss_pred             cCCeEEcCCCCC---------CCC--CCcccEEEEEeCChHHHHHHHhhcCCC------------------------Cc-
Q 030477           77 QGGNIVDYHGCD---------FFP--ERWFDRVVVLQTENSVLYDRLTKRGYT------------------------GA-  120 (176)
Q Consensus        77 ~~~~vid~~~~~---------~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~~------------------------~~-  120 (176)
                      ++++|+|.....         .+.  ...++.+|||++|++++.+|+..|...                        ++ 
T Consensus        83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l  162 (220)
T 1aky_A           83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL  162 (220)
T ss_dssp             GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence            568899841110         000  013578999999999999999877421                        01 


Q ss_pred             --cccchhH--HHHHHHHHHHHHh---cCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477          121 --KLTNNIE--CEIFQVLLEEAKE---SYPE-DIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       121 --~~~~~~~--~~~~~~~~~~~~~---~~~~-~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                        +..++.+  ..++..+.....+   .|.. +.++.+++. +++++.+.|..++
T Consensus       163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (220)
T 1aky_A          163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL  217 (220)
T ss_dssp             BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHH
Confidence              1111111  1234444443322   4442 456677754 8999988887765

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.80  E-value=1.4e-18  Score=120.50  Aligned_cols=142  Identities=17%  Similarity=0.214  Sum_probs=87.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCC---
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHG---   86 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~---   86 (176)
                      ++|+|+|+|||||||+++.|++++|+++++.|.+.......              ..++.....+..+..++.|...   
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~--------------~~~~~~~~~l~~~~~vi~dr~~~~~   67 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGN--------------EKLFEHFNKLADEDNVIIDRFVYSN   67 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCH--------------HHHHHHHHHHTTCCSEEEESCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHH--------------HHHHHHHHHHHhCCCeEEeeeecch
Confidence            58999999999999999999999999999988766543200              1111122222222333333100   


Q ss_pred             ---------CCCCCC----------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-Cc
Q 030477           87 ---------CDFFPE----------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DI  146 (176)
Q Consensus        87 ---------~~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  146 (176)
                               ...+..          ..++.+|||++|++++.+|+.+|++  +... ....+.+...+....+.|.. ..
T Consensus        68 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r--~~~~-~~~~~~~~~~~~~~~~~~~~~~~  144 (173)
T 3kb2_A           68 LVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD--EYIE-GKDIDSILELYREVMSNAGLHTY  144 (173)
T ss_dssp             HHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSC--SCCC-HHHHHHHHHHHHHHHHTCSSCEE
T ss_pred             HHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC--cchh-hhHHHHHHHHHHHHHhhcCCCEE
Confidence                     000000          1267899999999999999998854  2222 22233455556666666664 23


Q ss_pred             EEEecCCCHHHHHHHHHHHHHH
Q 030477          147 VLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       147 ~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      +++.++.+++++.+.|...++.
T Consensus       145 ~id~~~~~~~ev~~~I~~~~~~  166 (173)
T 3kb2_A          145 SWDTGQWSSDEIAKDIIFLVEL  166 (173)
T ss_dssp             EEETTTSCHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHhC
Confidence            3333334899888888777654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.80  E-value=4.2e-19  Score=124.78  Aligned_cols=159  Identities=16%  Similarity=0.288  Sum_probs=92.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhcc-----cccchHHHHHHHHHHhhcCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELEC-----HVINEDLVCDELEDIMEQGGN   80 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~l~~~i~~~~~~~~~   80 (176)
                      .++.+|+|+|+|||||||+++.|++++|+++++.|++++... .....+.....     .....+.+...+...+.. ++
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~-~~   80 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE-RV   80 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS-EE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC-CE
Confidence            456789999999999999999999999999999999887642 11112211111     111223344445544433 48


Q ss_pred             EEcCCCCCC---------CCCC--cccEEEEEeCChHHHHHHHhhcCC--CCccccchhHHHHHHHHHHHHH---hcCCC
Q 030477           81 IVDYHGCDF---------FPER--WFDRVVVLQTENSVLYDRLTKRGY--TGAKLTNNIECEIFQVLLEEAK---ESYPE  144 (176)
Q Consensus        81 vid~~~~~~---------~~~~--~~~~vi~l~~~~~~~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~  144 (176)
                      |+|......         +...  .++.+|||++|++++.+|+..|+.  .+.......-..++..++....   +.|..
T Consensus        81 i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~  160 (186)
T 3cm0_A           81 IFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEA  160 (186)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888422110         1100  257899999999999999988741  1111111111123333333322   23332


Q ss_pred             -CcEEEecC-CCHHHHHHHHHHHH
Q 030477          145 -DIVLALKS-DTIEDITRNIAILT  166 (176)
Q Consensus       145 -~~~i~~~~-~s~~ev~~~i~~~~  166 (176)
                       +.++.+++ .+++++.+.|..++
T Consensus       161 ~~~~~~id~~~~~~~v~~~i~~~l  184 (186)
T 3cm0_A          161 RGVLKRVDGLGTPDEVYARIRAAL  184 (186)
T ss_dssp             TTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCHHHHHHHHHHHh
Confidence             22444554 48999988887765

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.80  E-value=1.2e-18  Score=122.96  Aligned_cols=161  Identities=19%  Similarity=0.332  Sum_probs=93.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--CCCchhhhccc-----ccch----HHHHHHHHHHh-
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--HDGWDDELECH-----VINE----DLVCDELEDIM-   75 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~----~~l~~~i~~~~-   75 (176)
                      ++.+|+|+|+|||||||+++.|++++|+++++.|++++....  ...++.....+     ....    ..+...+.... 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            467899999999999999999999999999999998765421  11222211111     1111    12222333222 


Q ss_pred             ---hcCCeEEcCCCCCC-----CC-----CCcccEEEEEeCChHHHHHHHhhcCCCCccccchh--HHHHHHHHHHHHHh
Q 030477           76 ---EQGGNIVDYHGCDF-----FP-----ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI--ECEIFQVLLEEAKE  140 (176)
Q Consensus        76 ---~~~~~vid~~~~~~-----~~-----~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~  140 (176)
                         .+..+|+|......     +.     ...++.+|||++|++++.+|+.+|+....+...+.  ...++..+.....+
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~  161 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP  161 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence               24567888432110     00     01357899999999999999988753211221111  12234444444332


Q ss_pred             ---cCCC-CcEEEecC-CCHHHHHHHHHHHHHH
Q 030477          141 ---SYPE-DIVLALKS-DTIEDITRNIAILTDW  168 (176)
Q Consensus       141 ---~~~~-~~~i~~~~-~s~~ev~~~i~~~~~~  168 (176)
                         .|.. ..++.+++ .+++++.+.|..+++.
T Consensus       162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence               3432 23333444 4899999988887753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.80  E-value=6.8e-18  Score=121.95  Aligned_cols=162  Identities=17%  Similarity=0.321  Sum_probs=97.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhccc-----ccchHHHHHHHHHH-----h
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECH-----VINEDLVCDELEDI-----M   75 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~i~~~-----~   75 (176)
                      .++++|+|+|+|||||||+++.|++++|+.+++.|++++... .....+.....+     ....+.+...++..     .
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence            356789999999999999999999999999999999987632 111222221111     12223333333332     2


Q ss_pred             hcCCeEEcCCCCC-----CCCC--CcccEEEEEeCChHHHHHHHhhcCCCC------------c-------ccc----c-
Q 030477           76 EQGGNIVDYHGCD-----FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTG------------A-------KLT----N-  124 (176)
Q Consensus        76 ~~~~~vid~~~~~-----~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~------------~-------~~~----~-  124 (176)
                      ..+++|+|.....     .+..  ..++.+|||++|++++.+|+..|....            +       ...    + 
T Consensus        83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~  162 (222)
T 1zak_A           83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT  162 (222)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred             cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence            3578888842111     0110  125789999999999999998764210            0       010    0 


Q ss_pred             -hhHHHHHHHHHHHHHh---cCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          125 -NIECEIFQVLLEEAKE---SYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       125 -~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                       ..-..++..++.+..+   .|.. .++.+++. +++++.+.|..++...
T Consensus       163 ~~~i~~Rl~~~~~~~~~l~~~y~~-~~~~Id~~~~~~ev~~~I~~~l~~~  211 (222)
T 1zak_A          163 EEKVKLRLETYYQNIESLLSTYEN-IIVKVQGDATVDAVFAKIDELLGSI  211 (222)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTCC-CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cEEEEECCCCHHHHHHHHHHHHHhh
Confidence             1111234455554433   5654 34445544 8999999998887654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.80  E-value=5.6e-19  Score=124.07  Aligned_cols=154  Identities=17%  Similarity=0.109  Sum_probs=93.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh---hcccccchHHHHHHHHHHhhcCCeEEcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE---LECHVINEDLVCDELEDIMEQGGNIVDY   84 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~~~~vid~   84 (176)
                      .++.|+|+|+|||||||+++.|++++|+++++.|++...... ....+.   .....+. ..-...+..+.....+++..
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~vi~~   81 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFR-RREREMIEALCKLDNIILAT   81 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CChhhHHHHhCHHHHH-HHHHHHHHHHHhcCCcEEec
Confidence            367899999999999999999999999999999998765421 111110   0000010 11111222233334444432


Q ss_pred             CC--------CCCCCCCcccEEEEEeCChHHHHHHH--hhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecC
Q 030477           85 HG--------CDFFPERWFDRVVVLQTENSVLYDRL--TKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKS  152 (176)
Q Consensus        85 ~~--------~~~~~~~~~~~vi~l~~~~~~~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~  152 (176)
                      ..        ...+.  ..+.+|||++|++++.+|+  ..+. .++........+.+..++..+.+.|..  +.+|+++.
T Consensus        82 gg~~~~~~~~~~~l~--~~~~vi~L~~~~e~l~~Rl~~~~~~-~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt~~  158 (185)
T 3trf_A           82 GGGVVLDEKNRQQIS--ETGVVIYLTASIDTQLKRIGQKGEM-RRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPTDD  158 (185)
T ss_dssp             CTTGGGSHHHHHHHH--HHEEEEEEECCHHHHHHHHHCCTTC-SSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEECTT
T ss_pred             CCceecCHHHHHHHH--hCCcEEEEECCHHHHHHHHhhcCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEECCC
Confidence            11        11111  1347999999999999999  4332 233333322234566666666666653  67777776


Q ss_pred             CCHHHHHHHHHHHH
Q 030477          153 DTIEDITRNIAILT  166 (176)
Q Consensus       153 ~s~~ev~~~i~~~~  166 (176)
                      .+++++.+.|..++
T Consensus       159 ~~~~e~~~~I~~~l  172 (185)
T 3trf_A          159 LNPRQLATQILVDI  172 (185)
T ss_dssp             CCHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHH
Confidence            68998888887765

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.79  E-value=8.8e-19  Score=126.04  Aligned_cols=100  Identities=26%  Similarity=0.459  Sum_probs=70.2

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-Cchhhhc----cc-ccchHHHHHHHHHHh----hcCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-GWDDELE----CH-VINEDLVCDELEDIM----EQGGN   80 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-~~~~~~~----~~-~~~~~~l~~~i~~~~----~~~~~   80 (176)
                      .|+|+|+|||||||+++.|++++|+++++.|++++...... ..+....    .. ....+.+...+...+    .+.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~   81 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGF   81 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCE
Confidence            58999999999999999999999999999999988753221 1221111    11 122233344444332    35678


Q ss_pred             EEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhc
Q 030477           81 IVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKR  115 (176)
Q Consensus        81 vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r  115 (176)
                      ++|.     ++..                .++.+|+|++|++++.+|+.+|
T Consensus        82 ildg-----~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           82 LLDG-----FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             EEES-----CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             EEeC-----CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence            9984     3221                2678999999999999999988

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.79  E-value=1.5e-18  Score=121.06  Aligned_cols=151  Identities=17%  Similarity=0.183  Sum_probs=91.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh----hcccccchHHHHHHHHHHhhcCCeEEcC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE----LECHVINEDLVCDELEDIMEQGGNIVDY   84 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~~~~~~~~vid~   84 (176)
                      ++.|+|+|+|||||||+++.|++++|+++++.|++.+.... ......    ....+.  ..-...++.+.....+|++.
T Consensus         4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~--~~~~~~~~~l~~~~~~vi~~   80 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFR--EQEQKMADFFSSCEKACIAT   80 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHH--HHHHHHHHHHTTCCSEEEEC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC-CCHHHHHHHcCHHHHH--HHHHHHHHHHHccCCEEEEC
Confidence            35799999999999999999999999999999998765321 111110    000110  11111222333344555542


Q ss_pred             CCC----CCCCCCcccEEEEEeCChHHHHHHHhhcCC-CCccccchhHHHHHHHHHHHHHhcCC--CCcEEEecCCCHHH
Q 030477           85 HGC----DFFPERWFDRVVVLQTENSVLYDRLTKRGY-TGAKLTNNIECEIFQVLLEEAKESYP--EDIVLALKSDTIED  157 (176)
Q Consensus        85 ~~~----~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~e  157 (176)
                      ...    ..+..  .+.+|||++|++++.+|+..|.+ .++....   .+.+...+..+.+.|.  .+.+|+++..++++
T Consensus        81 g~~~~~~~~l~~--~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~---~~~i~~~~~~r~~~y~~~~~~~Idt~~~~~ee  155 (175)
T 1via_A           81 GGGFVNVSNLEK--AGFCIYLKADFEYLKKRLDKDEISKRPLFYD---EIKAKKLYNERLSKYEQKANFILNIENKNIDE  155 (175)
T ss_dssp             CTTGGGSTTGGG--GCEEEEEECCHHHHTTCCCGGGTTTSCTTCC---HHHHHHHHHHHHHHHHHHCSEEEECTTCCHHH
T ss_pred             CCCEehhhHHhc--CCEEEEEeCCHHHHHHHHhcccCCCCCCccc---HHHHHHHHHHHHHHHHhcCCEEEECCCCCHHH
Confidence            110    00222  46899999999999999987631 2222221   2345556666655554  25677776668998


Q ss_pred             HHHHHHHHHH
Q 030477          158 ITRNIAILTD  167 (176)
Q Consensus       158 v~~~i~~~~~  167 (176)
                      +.+.|...+.
T Consensus       156 v~~~I~~~l~  165 (175)
T 1via_A          156 LLSEIKKVIK  165 (175)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            8888877653

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.79  E-value=1e-18  Score=126.26  Aligned_cols=155  Identities=17%  Similarity=0.276  Sum_probs=91.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhccc-----ccchHHHHHHHHHHh----hc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELECH-----VINEDLVCDELEDIM----EQ   77 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~i~~~~----~~   77 (176)
                      ..+.+.|+|+|||||||+|+.|++++|+++++++++++... .....+.....+     ....+.+...+...+    ..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~   86 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA   86 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence            45678999999999999999999999999999999998752 222233322222     223444555555433    34


Q ss_pred             CCeEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCC------------c-------------
Q 030477           78 GGNIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTG------------A-------------  120 (176)
Q Consensus        78 ~~~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~------------~-------------  120 (176)
                      .+||+|     +||+.            .++.||+|++|++++.+|+..|....            +             
T Consensus        87 ~g~ILD-----GfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L  161 (230)
T 3gmt_A           87 NGYLFD-----GFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPL  161 (230)
T ss_dssp             TCEEEE-----SCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CCeEec-----CCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCcc
Confidence            689999     66653            36789999999999999999885210            0             


Q ss_pred             --cccchhH--HHHHHHHHHHHH---hcCCC------------CcEEEecCC-CHHHHHHHHHHHHH
Q 030477          121 --KLTNNIE--CEIFQVLLEEAK---ESYPE------------DIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       121 --~~~~~~~--~~~~~~~~~~~~---~~~~~------------~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                        +..++.+  ..++..+.++..   +.|..            +.++.+|+. ++++|.+.|..++.
T Consensus       162 ~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~  228 (230)
T 3gmt_A          162 VQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQV  228 (230)
T ss_dssp             BCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC----------------
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHh
Confidence              1111111  234554544433   34553            577888876 89999988887653

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.79  E-value=1.7e-18  Score=124.54  Aligned_cols=105  Identities=23%  Similarity=0.371  Sum_probs=70.1

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-Cchhhhc----cc-ccchHHHHHHHHHHh----hcCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-GWDDELE----CH-VINEDLVCDELEDIM----EQGGN   80 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-~~~~~~~----~~-~~~~~~l~~~i~~~~----~~~~~   80 (176)
                      .|+|+|+|||||||+++.|++++|+++++.|++++...... ..+....    .. ......+...+...+    .+.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~   81 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGF   81 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcE
Confidence            68999999999999999999999999999999988753221 1221111    11 122233344444333    35678


Q ss_pred             EEcCCCCCC-----CCC------CcccEEEEEeCChHHHHHHHhhc
Q 030477           81 IVDYHGCDF-----FPE------RWFDRVVVLQTENSVLYDRLTKR  115 (176)
Q Consensus        81 vid~~~~~~-----~~~------~~~~~vi~l~~~~~~~~~R~~~r  115 (176)
                      |+|......     +..      ..++.+|||++|++++.+|+.+|
T Consensus        82 ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           82 LLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            998421110     000      02678999999999999999988

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.78  E-value=4e-19  Score=130.54  Aligned_cols=158  Identities=13%  Similarity=0.144  Sum_probs=95.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchh---hhcccccchHHHHHHHHHHhhc-CCeEE-c
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDD---ELECHVINEDLVCDELEDIMEQ-GGNIV-D   83 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~-~~~vi-d   83 (176)
                      +..|+|+|++||||||+++.|++.+|+.+++.|++.+..........   ......+. +.-.+.+..+... .+.|+ +
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr-~~e~~~l~~l~~~~~~~Via~  126 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFR-EKETEALKKLSLMYHQVVVST  126 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHH-HHHHHHHHHHHHHCSSEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHH-HHHHHHHHHHHhhcCCcEEec
Confidence            67999999999999999999999999999999998876541111111   11111110 1111122223322 23333 2


Q ss_pred             C-------CCCCCCCCCcccEEEEEeCChHHHHHHHhhcC-CCCccccc-h------hHHHHHHHHHHHHHhcCCC-CcE
Q 030477           84 Y-------HGCDFFPERWFDRVVVLQTENSVLYDRLTKRG-YTGAKLTN-N------IECEIFQVLLEEAKESYPE-DIV  147 (176)
Q Consensus        84 ~-------~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~-~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~-~~~  147 (176)
                      .       .....+.   .+.+|||++|++++.+|+.+++ ..++.... .      ...+.+..++.++.+.|.. +.+
T Consensus       127 GgG~v~~~~~~~~l~---~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~v  203 (250)
T 3nwj_A          127 GGGAVIRPINWKYMH---KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASAR  203 (250)
T ss_dssp             CGGGGGSHHHHHHHT---TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTSSEE
T ss_pred             CCCeecCHHHHHHHh---CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhCCEE
Confidence            2       1112222   2679999999999999998643 22333322 0      1135678888888888876 666


Q ss_pred             E------------EecCCCHHHHHHHHHHHHHHHH
Q 030477          148 L------------ALKSDTIEDITRNIAILTDWVR  170 (176)
Q Consensus       148 i------------~~~~~s~~ev~~~i~~~~~~~~  170 (176)
                      +            +++..+++++.+.|...++.+.
T Consensus       204 i~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~  238 (250)
T 3nwj_A          204 VSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYL  238 (250)
T ss_dssp             EEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred             EEecccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence            6            4555689998888887775543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.77  E-value=6.6e-18  Score=117.25  Aligned_cols=154  Identities=16%  Similarity=0.157  Sum_probs=91.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhh---hcccccchHHHHHHHHHHhhcCCeEEcCCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDE---LECHVINEDLVCDELEDIMEQGGNIVDYHG   86 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~~~~vid~~~   86 (176)
                      ++|+|+|+|||||||+++.|++.+|+++++.|++.+... ......-   .....+. ......+..+. .+++|++...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~vi~~g~   79 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFR-RRESEALQAVA-TPNRVVATGG   79 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH-CSCHHHHHHHHHHHHHH-HHHHHHHHHHC-CSSEEEECCT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh-CCCHHHHHHHcCHHHHH-HHHHHHHHHhh-cCCeEEECCC
Confidence            689999999999999999999999999999999877641 1111110   0000000 00011122222 4566665221


Q ss_pred             -CCCCCCC-----cccEEEEEeCChHHHHHHHh--hcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCCCHHH
Q 030477           87 -CDFFPER-----WFDRVVVLQTENSVLYDRLT--KRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTIED  157 (176)
Q Consensus        87 -~~~~~~~-----~~~~vi~l~~~~~~~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~e  157 (176)
                       .-..+..     .++.+|||++|++++.+|+.  .|...++..........+..++....+.|.. +.+|+++..++++
T Consensus        80 ~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~  159 (173)
T 1e6c_A           80 GMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAA  159 (173)
T ss_dssp             TGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCHHH
T ss_pred             cEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCHHH
Confidence             1111110     14789999999999999998  7732223222111123455555554443432 6777777678998


Q ss_pred             HHHHHHHHH
Q 030477          158 ITRNIAILT  166 (176)
Q Consensus       158 v~~~i~~~~  166 (176)
                      +.+.|...+
T Consensus       160 ~~~~i~~~l  168 (173)
T 1e6c_A          160 IVCELMQTM  168 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            888887665

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.77  E-value=1.2e-17  Score=121.57  Aligned_cols=163  Identities=18%  Similarity=0.273  Sum_probs=97.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh----h
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM----E   76 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~----~   76 (176)
                      .++++|+|+|+|||||||+++.|++++|+.+++.+++++..... ...+.....+     ....+.+...+...+    .
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~   93 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   93 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence            35679999999999999999999999999999999988764211 1112111111     122233344444433    3


Q ss_pred             cCCeEEcCCCCC---------CCCC--CcccEEEEEeCChHHHHHHHhhcCCC------------------------Cc-
Q 030477           77 QGGNIVDYHGCD---------FFPE--RWFDRVVVLQTENSVLYDRLTKRGYT------------------------GA-  120 (176)
Q Consensus        77 ~~~~vid~~~~~---------~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~------------------------~~-  120 (176)
                      ++++|+|.....         .+..  ..++.+|||++|++++.+|+..|...                        .+ 
T Consensus        94 ~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l  173 (233)
T 1ak2_A           94 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPL  173 (233)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBC
T ss_pred             cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccc
Confidence            357899842110         0000  12678999999999999999877421                        01 


Q ss_pred             --cccchh--HHHHHHHHHHHHH---hcCCC-CcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          121 --KLTNNI--ECEIFQVLLEEAK---ESYPE-DIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       121 --~~~~~~--~~~~~~~~~~~~~---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                        +..+..  -..++..+.....   ..|.. +.++.+|+. +++++.+.|..+++.+
T Consensus       174 ~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~  231 (233)
T 1ak2_A          174 IRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  231 (233)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence              111111  1223444333322   23432 345566655 8999999998887654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.77  E-value=5.1e-18  Score=117.50  Aligned_cols=151  Identities=13%  Similarity=0.214  Sum_probs=86.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchh---hhcccccchHHHHHHHHHHhhcCCe-EEc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDD---ELECHVINEDLVCDELEDIMEQGGN-IVD   83 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~-vid   83 (176)
                      .+.+|+|+|+|||||||+++.|++++|+++++.|++.+.... ....+   ......+. +.-...+..+.....+ |+.
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~Vi~   83 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG-LSVREIFEELGEDNFR-MFEKNLIDELKTLKTPHVIS   83 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHH-HHHHHHHHHHHTCSSCCEEE
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHH-HHHHHHHHHHHhcCCCEEEE
Confidence            568999999999999999999999999999999998876431 11111   00000010 1111122333333444 553


Q ss_pred             CC-CC---CCCCCCcccEEEEEeCChHHHHHHHhhcC-CCCccccchhHHHHHHHHHHHHHhcCC--CCcEEEecCCCHH
Q 030477           84 YH-GC---DFFPERWFDRVVVLQTENSVLYDRLTKRG-YTGAKLTNNIECEIFQVLLEEAKESYP--EDIVLALKSDTIE  156 (176)
Q Consensus        84 ~~-~~---~~~~~~~~~~vi~l~~~~~~~~~R~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~  156 (176)
                      .. ..   ..+.  .++.+|||++|++++.+|+..|. ..++... +  .+.+...+..+.+.|.  .+.+++++. +++
T Consensus        84 ~g~g~~~~~~l~--~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~-~--~~~~~~~~~~r~~~~~~~a~~~Id~~~-~~e  157 (168)
T 1zuh_A           84 TGGGIVMHENLK--GLGTTFYLKMDFETLIKRLNQKEREKRPLLN-N--LTQAKELFEKRQALYEKNASFIIDARG-GLN  157 (168)
T ss_dssp             CCGGGGGCGGGT--TSEEEEEEECCHHHHHHHHCC--------CC-T--THHHHHHHHHHHHHHHHTCSEEEEGGG-CHH
T ss_pred             CCCCEechhHHh--cCCEEEEEECCHHHHHHHHhccCCCCCCCcc-C--HHHHHHHHHHHHHHHHHHCCEEEECCC-CHH
Confidence            21 00   0022  25789999999999999998772 1112222 1  2234444444444443  256677666 898


Q ss_pred             HHHHHHHHHH
Q 030477          157 DITRNIAILT  166 (176)
Q Consensus       157 ev~~~i~~~~  166 (176)
                      ++.+.|...+
T Consensus       158 ~~~~~I~~~l  167 (168)
T 1zuh_A          158 NSLKQVLQFI  167 (168)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHh
Confidence            8888776543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.77  E-value=1.7e-17  Score=120.06  Aligned_cols=160  Identities=20%  Similarity=0.194  Sum_probs=89.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-----cCCCchh-------------hhc---------
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-----LHDGWDD-------------ELE---------   58 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-----~~~~~~~-------------~~~---------   58 (176)
                      |.++.+|+|+|++||||||+++.|++.+|+++++.|++.+...     ....+..             .+.         
T Consensus         2 m~~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (227)
T 1cke_A            2 TAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVI   81 (227)
T ss_dssp             -CCSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEE
Confidence            3445789999999999999999999999999999999987421     0111100             000         


Q ss_pred             -------ccccch------------HHHHHHHHHH----hhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHh
Q 030477           59 -------CHVINE------------DLVCDELEDI----MEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLT  113 (176)
Q Consensus        59 -------~~~~~~------------~~l~~~i~~~----~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~  113 (176)
                             ..+...            ..+.+.+...    ..++++++|.....  .++  .++.+|||++|++++.+|..
T Consensus        82 l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~~~~~--~~d~~i~l~~~~e~~~~R~~  159 (227)
T 1cke_A           82 LEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFP--DAPVKIFLDASSEERAHRRM  159 (227)
T ss_dssp             ETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCCCCCT--TCSEEEEEECCHHHHHHHHH
T ss_pred             ECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccceEec--CCCEEEEEeCCHHHHHHHHH
Confidence                   000111            1122222221    23467888865432  333  36899999999999999943


Q ss_pred             ----hcCCCCccccchhHHHHHH----HHHHHHHhcCCCC--cEEEecCCCHHHHHHHHHHHHHHH
Q 030477          114 ----KRGYTGAKLTNNIECEIFQ----VLLEEAKESYPED--IVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       114 ----~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                          .|+...  ..+....+...    ++.....+.+...  .+++.+..+++++.+.|..++...
T Consensus       160 ~~l~~rg~~~--~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~  223 (227)
T 1cke_A          160 LQLQVKGFSV--NFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQK  223 (227)
T ss_dssp             HHHHHHTCCC--CHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCccC--CHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence                444311  11111111111    1111223444432  555555458999999988887543

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.77  E-value=7e-18  Score=122.09  Aligned_cols=107  Identities=20%  Similarity=0.264  Sum_probs=72.6

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHHHHHh-h--cCCe
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDELEDIM-E--QGGN   80 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i~~~~-~--~~~~   80 (176)
                      ++|+|+|+|||||||+++.|++++|+++++.|++++.+... ...+.....+     +...+.+...+...+ .  +.++
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v   80 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW   80 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence            37999999999999999999999999999999998876321 1222221111     112234444455443 3  5678


Q ss_pred             EEcCCCCC-----CCC------CCcccEEEEEeCChHHHHHHHhhcC
Q 030477           81 IVDYHGCD-----FFP------ERWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        81 vid~~~~~-----~~~------~~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      |+|.....     .+.      ...++.+|||++|++++.+|+..|+
T Consensus        81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence            88842111     010      0136789999999999999999886

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.77  E-value=1.5e-18  Score=121.81  Aligned_cols=151  Identities=14%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh---cccccchHHHHHHHHHHhhcCCeEEcCC-
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL---ECHVINEDLVCDELEDIMEQGGNIVDYH-   85 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~vid~~-   85 (176)
                      ++|+|+|+|||||||+|+.|++++|+++++.|++.+.... .....-+   ....+. +.....++.+.....+|+... 
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~vi~~g~   80 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFR-RIEEDVVRAALADHDGVLSLGG   80 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHH-HHHHHHHHHHHHHCCSEEECCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-CCHHHHHHHhChHHHH-HHHHHHHHHHHhcCCeEEecCC
Confidence            5799999999999999999999999999999998775421 1111100   000110 111122233333334444311 


Q ss_pred             -------CCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC--CCcEEEecCCCHH
Q 030477           86 -------GCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP--EDIVLALKSDTIE  156 (176)
Q Consensus        86 -------~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~  156 (176)
                             ....+.   .+.+|||++|++++.+|+..|+.. +........+.+..++..+.+.|.  .+.+|+++..+++
T Consensus        81 ~~v~~~~~~~~l~---~~~vV~L~~~~e~~~~Rl~~r~~r-~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~e  156 (184)
T 2iyv_A           81 GAVTSPGVRAALA---GHTVVYLEISAAEGVRRTGGNTVR-PLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPG  156 (184)
T ss_dssp             TGGGSHHHHHHHT---TSCEEEEECCHHHHHHHTTCCCCC-SSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHH
T ss_pred             cEEcCHHHHHHHc---CCeEEEEeCCHHHHHHHHhCCCCC-CCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCHH
Confidence                   111111   457999999999999999877532 222211122345555555555453  2566666656898


Q ss_pred             HHHHHHHHHH
Q 030477          157 DITRNIAILT  166 (176)
Q Consensus       157 ev~~~i~~~~  166 (176)
                      ++.+.|...+
T Consensus       157 e~~~~I~~~l  166 (184)
T 2iyv_A          157 AVVRHILSRL  166 (184)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHHH
Confidence            8877776544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.77  E-value=1.1e-17  Score=115.92  Aligned_cols=154  Identities=20%  Similarity=0.248  Sum_probs=88.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-----Cchhhhcccc--cchHHHHHHHHHHh---hcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-----GWDDELECHV--INEDLVCDELEDIM---EQGG   79 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~l~~~i~~~~---~~~~   79 (176)
                      ++|+|+|+|||||||+++.| +++|+++++.+++++......     ........+.  +....+.+.+...+   .+..
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   80 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDL   80 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCCSC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCe
Confidence            68999999999999999999 999999999999887653211     1111010000  01223333344333   3356


Q ss_pred             eEEcCCCCCC-----CCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH----HHhcCC-CCcE
Q 030477           80 NIVDYHGCDF-----FPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE----AKESYP-EDIV  147 (176)
Q Consensus        80 ~vid~~~~~~-----~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~  147 (176)
                      +|+|.. ...     +..  ..++.+|||++|++++.+|+..|++......  . .+....+...    ..+.+. .+.+
T Consensus        81 vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~--~-~~~~~r~~~~~~~~~~~~~~~ad~v  156 (179)
T 3lw7_A           81 VVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKE--I-SELIRRDREELKLGIGEVIAMADYI  156 (179)
T ss_dssp             EEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCC--H-HHHHHHHHHHHHHTHHHHHHTCSEE
T ss_pred             EEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcch--H-HHHHHHHHhhhccChHhHHHhCCEE
Confidence            788853 100     000  0245799999999999999998875321111  1 1111111110    111111 1455


Q ss_pred             EEecCCCHHHHHHHHHHHHHHH
Q 030477          148 LALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       148 i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                      ++. +.+++++.+.+..+++.+
T Consensus       157 Id~-~~~~~~~~~~i~~~l~~~  177 (179)
T 3lw7_A          157 ITN-DSNYEEFKRRCEEVTDRV  177 (179)
T ss_dssp             EEC-CSCHHHHHHHHHHHHHHH
T ss_pred             EEC-CCCHHHHHHHHHHHHHHH
Confidence            553 348999999998888654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.77  E-value=1.6e-18  Score=123.45  Aligned_cols=151  Identities=18%  Similarity=0.172  Sum_probs=92.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccc---hHHHHHHHHHHh-hcCCeEEc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVIN---EDLVCDELEDIM-EQGGNIVD   83 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~-~~~~~vid   83 (176)
                      ++++|+|+|++||||||+++.|++.+|+.+++.|++....... .  .... ..+.   ....+..+...+ .+.++|+|
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~-~--~~~g-~~~~~~~~~~~~~~l~~~~~~~~~vivd   92 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIR-K--MSEG-IPLTDDDRWPWLAAIGERLASREPVVVS   92 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHH-H--HHHT-CCCCHHHHHHHHHHHHHHHTSSSCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHH-H--HhcC-CCCCchhhHHHHHHHHHHHhcCCCEEEE
Confidence            4679999999999999999999999999999988874321100 0  0000 1111   112233344333 34567888


Q ss_pred             CCCCC-----CCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCC
Q 030477           84 YHGCD-----FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDT  154 (176)
Q Consensus        84 ~~~~~-----~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s  154 (176)
                      .....     .+..  ..+..+|||++|++++.+|+.+|+.....      .+.+...+....+.+..  ..+|+++ .+
T Consensus        93 ~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Id~~-~~  165 (202)
T 3t61_A           93 CSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP------SSLLQTQLETLEDPRGEVRTVAVDVA-QP  165 (202)
T ss_dssp             CCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC------HHHHHHHHHHCCCCTTSTTEEEEESS-SC
T ss_pred             CCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC------HHHHHHHHHhcCCCCCCCCeEEEeCC-CC
Confidence            54211     0100  11358999999999999999988632111      23444455544444544  3344444 58


Q ss_pred             HHHHHHHHHHHHHHH
Q 030477          155 IEDITRNIAILTDWV  169 (176)
Q Consensus       155 ~~ev~~~i~~~~~~~  169 (176)
                      ++++.+.|..++...
T Consensus       166 ~~e~~~~I~~~l~~~  180 (202)
T 3t61_A          166 LAEIVREALAGLARL  180 (202)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999998888887543

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.76  E-value=1.5e-17  Score=120.53  Aligned_cols=111  Identities=23%  Similarity=0.304  Sum_probs=71.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccc-----ccchHHHHHHHHHHh---h
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECH-----VINEDLVCDELEDIM---E   76 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~i~~~~---~   76 (176)
                      +.++++|+|+|+|||||||+++.|++++|+.+++.|++++.... ....+.....+     ....+.....+...+   .
T Consensus         4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~   83 (227)
T 1zd8_A            4 SARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLT   83 (227)
T ss_dssp             ---CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCT
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc
Confidence            45678999999999999999999999999999999998876432 11112111111     112222223332222   2


Q ss_pred             cCCeEEcCCCCCC-----CC-CCcccEEEEEeCChHHHHHHHhhcC
Q 030477           77 QGGNIVDYHGCDF-----FP-ERWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        77 ~~~~vid~~~~~~-----~~-~~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      +.++|+|......     +. ...++.+|||++|++++.+|+..|.
T Consensus        84 ~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~  129 (227)
T 1zd8_A           84 QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW  129 (227)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred             CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence            5678888532110     00 0236789999999999999998773

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.76  E-value=1.1e-18  Score=121.18  Aligned_cols=157  Identities=15%  Similarity=0.196  Sum_probs=85.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh---cccccchHHHHHHHHHHhhcCCeEEcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL---ECHVINEDLVCDELEDIMEQGGNIVDY   84 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~vid~   84 (176)
                      .+.+|+|+|++||||||+++.|++.+|+++++.|++.+... ......-+   ....+... -...+..+....++++..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~-~~~i~~i~~~~g~~~~~~~-~~~~l~~l~~~~~~v~~~   80 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADVGWVFDLEGEEGFRDR-EEKVINELTEKQGIVLAT   80 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHH-HHHHHHHHHTSSSEEEEC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh-CcCHHHHHHHHhHHHHHHH-HHHHHHHHHhCCCeEEEC
Confidence            35789999999999999999999999999999988876432 11111100   00001000 012233333345566542


Q ss_pred             CCCCCCCC------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHH
Q 030477           85 HGCDFFPE------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIE  156 (176)
Q Consensus        85 ~~~~~~~~------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~  156 (176)
                      .....+..      ...+.++||+++++++.+|+..|+.......++...+.+..++..+.+.|..  +.+|+++..+++
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id~~~~~~~  160 (173)
T 1kag_A           81 GGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAK  160 (173)
T ss_dssp             CTTGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC-----CHH
T ss_pred             CCeEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEECCCCCHH
Confidence            11111111      1246899999999999999987743211111111123455555555555543  455555556899


Q ss_pred             HHHHHHHHHH
Q 030477          157 DITRNIAILT  166 (176)
Q Consensus       157 ev~~~i~~~~  166 (176)
                      ++.+.+..++
T Consensus       161 ~~~~~i~~~l  170 (173)
T 1kag_A          161 VVANQIIHML  170 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877665

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.76  E-value=2.4e-17  Score=118.44  Aligned_cols=106  Identities=19%  Similarity=0.327  Sum_probs=71.1

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-cCCCchhhhcc-----cccchHHHHHHHHHHhh----cCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-LHDGWDDELEC-----HVINEDLVCDELEDIME----QGGN   80 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~l~~~i~~~~~----~~~~   80 (176)
                      .|+|+|+|||||||+++.|++++|+++++.|++++... .....+.....     .....+.+...+...+.    ..++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~   81 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF   81 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCE
Confidence            58999999999999999999999999999999988741 12222222111     12233444555554332    2578


Q ss_pred             EEcCCCCC-----CCCC--CcccEEEEEeCChHHHHHHHhhcC
Q 030477           81 IVDYHGCD-----FFPE--RWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        81 vid~~~~~-----~~~~--~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      |+|.....     .+..  ..++.+|||++|++++.+|+..|+
T Consensus        82 i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           82 LLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             EEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             EEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence            88842110     0100  135789999999999999998775

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.76  E-value=2.4e-17  Score=117.52  Aligned_cols=155  Identities=13%  Similarity=0.075  Sum_probs=91.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc--------CCCchhhhccccc-----------ch----
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL--------HDGWDDELECHVI-----------NE----   64 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-----------~~----   64 (176)
                      +.++|.|.|++||||||+++.||+++|++++| +++++....        +...++....+.+           ..    
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            45799999999999999999999999999999 877654321        1111211110110           00    


Q ss_pred             HHHHHHHHHHh--hcCCeEEcCCCCC-CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc
Q 030477           65 DLVCDELEDIM--EQGGNIVDYHGCD-FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES  141 (176)
Q Consensus        65 ~~l~~~i~~~~--~~~~~vid~~~~~-~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (176)
                      ....+.++.+.  ..+++|++..... .++.....+.|||++|++++.+|+.++..   ...+... +.+......+.+.
T Consensus        84 ~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~---~~~~~~~-~~i~~~d~~R~~~  159 (201)
T 3fdi_A           84 IRQFNFIRKKANEEKESFVIVGRCAEEILSDNPNMISAFILGDKDTKTKRVMEREG---VDEKTAL-NMMKKMDKMRKVY  159 (201)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEESTTHHHHTTTCTTEEEEEEEECHHHHHHHHHHHHT---CCHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEECCcchhcCCCCCeEEEEEECCHHHHHHHHHHHhC---CCHHHHH-HHHHHHHHHHHHH
Confidence            22344444555  5677888754322 34433235799999999999999986521   1111111 1222222222221


Q ss_pred             CC------------CCcEEEecCCCHHHHHHHHHHHHH
Q 030477          142 YP------------EDIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       142 ~~------------~~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      |.            .+.+|+++..+++++.+.|...++
T Consensus       160 y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~  197 (201)
T 3fdi_A          160 HNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID  197 (201)
T ss_dssp             HHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence            11            257888887899988888777664

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.74  E-value=6.7e-17  Score=112.50  Aligned_cols=150  Identities=13%  Similarity=0.183  Sum_probs=86.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-----ccCCCchh-hhcccccchHHHHHHHHHHh-hcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-----NLHDGWDD-ELECHVINEDLVCDELEDIM-EQGG   79 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~l~~~i~~~~-~~~~   79 (176)
                      +++.+|+|+|++||||||+++.|++.+|..+++.|++.+..     .....+.. .....+   ..+...+.... .+..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~   82 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL---QALNDAAFAMQRTNKV   82 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH---HHHHHHHHHHHHHCSE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH---HHHHHHHHHHHhcCCc
Confidence            35679999999999999999999999999999988874321     11111111 000000   11222222233 2456


Q ss_pred             eEEcCCCC-----CCCCCCccc-EEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc-CCC--CcEEEe
Q 030477           80 NIVDYHGC-----DFFPERWFD-RVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES-YPE--DIVLAL  150 (176)
Q Consensus        80 ~vid~~~~-----~~~~~~~~~-~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~i~~  150 (176)
                      +|+|....     ..+....++ .+|||++|++++.+|+..|+...   ..   ...+...+....+. |..  +.+|++
T Consensus        83 ~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~Id~  156 (175)
T 1knq_A           83 SLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF---FK---TQMLVTQFETLQEPGADETDVLVVDI  156 (175)
T ss_dssp             EEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCC---CC---HHHHHHHHHHCCCCCTTCTTEEEEEC
T ss_pred             EEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCC---Cc---hHHHHHHHHhhhCcccCCCCeEEEeC
Confidence            78875321     111111234 69999999999999999886321   11   11233333322333 444  344444


Q ss_pred             cCCCHHHHHHHHHHHH
Q 030477          151 KSDTIEDITRNIAILT  166 (176)
Q Consensus       151 ~~~s~~ev~~~i~~~~  166 (176)
                      + .+++++.+.|...+
T Consensus       157 ~-~~~~~~~~~i~~~l  171 (175)
T 1knq_A          157 D-QPLEGVVASTIEVI  171 (175)
T ss_dssp             S-SCHHHHHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHHH
Confidence            3 48888888777665

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.74  E-value=6.9e-18  Score=116.68  Aligned_cols=150  Identities=18%  Similarity=0.254  Sum_probs=88.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhh---cccccchHHHHHHHHHHhhcCCeEEcCC-
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDEL---ECHVINEDLVCDELEDIMEQGGNIVDYH-   85 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~vid~~-   85 (176)
                      +.|+|+|+|||||||+++.|++++|+++++.|++.+... .....+-.   ....+. ......+..+...+.+|++.. 
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~Vi~~g~   78 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE-GLSIPQIFEKKGEAYFR-KLEFEVLKDLSEKENVVISTGG   78 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHSCHHHHH-HHHHHHHHHHTTSSSEEEECCH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc-CCCHHHHHHHhChHHHH-HHHHHHHHHHhccCCeEEECCC
Confidence            369999999999999999999999999999999876542 11111100   000010 001112222233566777521 


Q ss_pred             C-------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC-CCcEEEecCCCHHH
Q 030477           86 G-------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP-EDIVLALKSDTIED  157 (176)
Q Consensus        86 ~-------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~e  157 (176)
                      .       ...+.  .++.+|||++|++++.+|+.+|.. ++...+ . .+.+...+..+.+.|. .+.++ .+..++++
T Consensus        79 ~~~~~~~~~~~l~--~~~~~i~l~~~~e~~~~R~~~r~~-r~~~~~-~-~~~i~~~~~~~~~~~~~~~~~i-~~~~~~~~  152 (168)
T 2pt5_A           79 GLGANEEALNFMK--SRGTTVFIDIPFEVFLERCKDSKE-RPLLKR-P-LDEIKNLFEERRKIYSKADIKV-KGEKPPEE  152 (168)
T ss_dssp             HHHTCHHHHHHHH--TTSEEEEEECCHHHHHHHCBCTTC-CBGGGS-C-GGGTHHHHHHHHHHHTTSSEEE-ECSSCHHH
T ss_pred             CEeCCHHHHHHHH--cCCEEEEEECCHHHHHHHHhCCCC-CCCCcc-h-HHHHHHHHHHHHHHHHhCCEEE-CCCCCHHH
Confidence            1       11121  157899999999999999987642 222211 1 1123333333344444 35555 54468999


Q ss_pred             HHHHHHHHHH
Q 030477          158 ITRNIAILTD  167 (176)
Q Consensus       158 v~~~i~~~~~  167 (176)
                      +.+.|..++.
T Consensus       153 ~~~~i~~~l~  162 (168)
T 2pt5_A          153 VVKEILLSLE  162 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888887764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.74  E-value=1.2e-16  Score=114.96  Aligned_cols=151  Identities=18%  Similarity=0.276  Sum_probs=89.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-------ccCCC-----------c-------------hhh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-------NLHDG-----------W-------------DDE   56 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-------~~~~~-----------~-------------~~~   56 (176)
                      ++.+|+|+|++||||||+++.|++.+|+++++.|++.+..       .....           +             +..
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~   81 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED   81 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence            4578999999999999999999999999999999987642       11000           0             000


Q ss_pred             hcccccchH----------------HHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHh----h
Q 030477           57 LECHVINED----------------LVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLT----K  114 (176)
Q Consensus        57 ~~~~~~~~~----------------~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~----~  114 (176)
                      ....+....                .+......+..++++|++.....  .++.  .+.+|||++|++++.+|+.    .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~~~~~~~--~~~vi~l~a~~e~~~~R~~~~~~~  159 (219)
T 2h92_A           82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPD--ADLKVYMIASVEERAERRYKDNQL  159 (219)
T ss_dssp             CGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCCCCCCTT--CSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             chhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCccceecCC--CCEEEEEECCHHHHHHHHHHHHHh
Confidence            000000000                01111112234567888865433  4443  5789999999999999975    3


Q ss_pred             cCCCCccccchhHHHHHHHHHHHHH---------hcCCC-C-cEEEecCCCHHHHHHHHHHHHH
Q 030477          115 RGYTGAKLTNNIECEIFQVLLEEAK---------ESYPE-D-IVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       115 r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~-~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      |+..  ...+     .....+..+.         +.|.. + .+|++++.+++++.+.|..+++
T Consensus       160 r~~~--~~~e-----~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~~~l~  216 (219)
T 2h92_A          160 RGIE--SNFE-----DLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVS  216 (219)
T ss_dssp             TTCC--CCHH-----HHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cCcc--cCHH-----HHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence            4431  1111     1122222221         44544 3 5666655589998888877664

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.74  E-value=1.4e-16  Score=113.37  Aligned_cols=153  Identities=16%  Similarity=0.151  Sum_probs=88.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc-----ccCCCchhhhcccccchHHHHHHHHHHh-hcCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-----NLHDGWDDELECHVINEDLVCDELEDIM-EQGGN   80 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~   80 (176)
                      .++.+|+|+|++||||||+++.|+..+|..+++.+++....     .....+....  .......+...+.... .+..+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~g~~v  104 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDED--RWPWLRSLAEWMDARADAGVST  104 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHH--HHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcc--cccHHHHHHHHHHHHHhcCCCE
Confidence            35789999999999999999999999999999988764211     0100010000  0000011112222222 34567


Q ss_pred             EEcCCCCC-----CCCCC-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecC-C
Q 030477           81 IVDYHGCD-----FFPER-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKS-D  153 (176)
Q Consensus        81 vid~~~~~-----~~~~~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~  153 (176)
                      |+|.....     .+... ....+|||++|++++.+|+.+|+.....      .+.+...+....+.|.....+.+++ .
T Consensus       105 iid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~------~~~l~~~~~~~~~~~~~~~~~~Id~~~  178 (200)
T 4eun_A          105 IITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMP------ASLLQSQLATLEALEPDESGIVLDLRQ  178 (200)
T ss_dssp             EEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSC------GGGHHHHHHHCCCCCTTSCEEEEETTS
T ss_pred             EEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCC------HHHHHHHHHHhCCCCCCCCeEEEECCC
Confidence            77753210     11110 1246899999999999999888643211      1234555555556666433333433 3


Q ss_pred             CHHHHHHHHHHHHH
Q 030477          154 TIEDITRNIAILTD  167 (176)
Q Consensus       154 s~~ev~~~i~~~~~  167 (176)
                      +++++.+.|..++.
T Consensus       179 ~~~e~~~~I~~~l~  192 (200)
T 4eun_A          179 PPEQLIERALTWLD  192 (200)
T ss_dssp             CHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHH
Confidence            78888877776653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.74  E-value=6.3e-17  Score=113.96  Aligned_cols=155  Identities=17%  Similarity=0.199  Sum_probs=86.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcc----cCCCchhhhcccccc-hHHHH----HHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKN----LHDGWDDELECHVIN-EDLVC----DELEDIM   75 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~l~----~~i~~~~   75 (176)
                      ++|+|+|+|||||||+++.|+++++     +.+++.+++++...    ..... ..+...... ...++    +.+...+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l   80 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR-DEMRKLSVEKQKKLQIDAAKGIAEEA   80 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH-HHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch-hhhhcCCHHHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999997     88898888775321    11111 111111111 01122    2233333


Q ss_pred             ---hcCCeEEcCCCCCC--------CCC-----CcccEEEEEeCChHHHHHH-Hhh--cCCCCcccc-chh-HHHHHHHH
Q 030477           76 ---EQGGNIVDYHGCDF--------FPE-----RWFDRVVVLQTENSVLYDR-LTK--RGYTGAKLT-NNI-ECEIFQVL  134 (176)
Q Consensus        76 ---~~~~~vid~~~~~~--------~~~-----~~~~~vi~l~~~~~~~~~R-~~~--r~~~~~~~~-~~~-~~~~~~~~  134 (176)
                         .+..+|+|......        ++.     ..++.+|||++|++++.+| +..  |++. +... +.. ..+.+...
T Consensus        81 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~-~~~~~~~~~~~~~~~~~  159 (194)
T 1nks_A           81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRN-DYSDESVILETINFARY  159 (194)
T ss_dssp             HHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCC-CCCSHHHHHHHHHHHHH
T ss_pred             hccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCC-CccCHHHHHHHHHHHHH
Confidence               33457778531100        000     1257899999999998865 766  6541 1111 111 12234444


Q ss_pred             HHHHHhcCCCCcEEEe-cCC-CHHHHHHHHHHHH
Q 030477          135 LEEAKESYPEDIVLAL-KSD-TIEDITRNIAILT  166 (176)
Q Consensus       135 ~~~~~~~~~~~~~i~~-~~~-s~~ev~~~i~~~~  166 (176)
                      +....+.|....++.+ ++. +++++.+.|..++
T Consensus       160 ~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          160 AATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence            4444444423334445 543 7888888777654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.73  E-value=1.1e-16  Score=117.85  Aligned_cols=159  Identities=21%  Similarity=0.239  Sum_probs=90.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc---------cCCC--chh---h----h------ccc--
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN---------LHDG--WDD---E----L------ECH--   60 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~---------~~~~--~~~---~----~------~~~--   60 (176)
                      .++.+|.|+||+||||||+++.|++++|+.+++.+.+.+...         ....  ...   .    +      ...  
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL  104 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence            456799999999999999999999999999999999873321         1000  000   0    0      000  


Q ss_pred             --------ccch----------------HHHHHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhh
Q 030477           61 --------VINE----------------DLVCDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        61 --------~~~~----------------~~l~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                              +...                +.+.+..+.+..++++|++.....  .++.  .++.|||++|++++.+|...
T Consensus       105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~v~~~--~~~~ifl~A~~e~r~~R~~~  182 (252)
T 4e22_A          105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVFPD--APVKIFLDASSQERAHRRML  182 (252)
T ss_dssp             TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCCCSTT--CSEEEEEECCHHHHHHHHHH
T ss_pred             CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceeceeecCC--CCEEEEEECCHHHHHHHHHH
Confidence                    0000                011122222334578888865544  3444  57899999999999998764


Q ss_pred             c----CCCCccccchhHHHHHHHHH----HHHHhcCCC--CcEEEecCCCHHHHHHHHHHHHHHH
Q 030477          115 R----GYTGAKLTNNIECEIFQVLL----EEAKESYPE--DIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       115 r----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                      .    +.  ....+....+...+..    ....+.+..  ..+|+++..+++++.+.|..+++..
T Consensus       183 ~l~~~~~--~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~  245 (252)
T 4e22_A          183 QLQERGF--NVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRI  245 (252)
T ss_dssp             HHHHHTC--CCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCC--CCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHH
Confidence            2    21  1111111111111111    111122222  2666776669999999888877543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.72  E-value=1.8e-18  Score=122.05  Aligned_cols=113  Identities=21%  Similarity=0.150  Sum_probs=71.1

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhhccccc--chHHHHHHHHHHh-hcCCe
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDELECHVI--NEDLVCDELEDIM-EQGGN   80 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~l~~~i~~~~-~~~~~   80 (176)
                      +|+++++|+|+|+|||||||+++.|++++|+++++.|.+...... ....+......+.  ....+.+.+...+ .+.++
T Consensus         1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v   80 (193)
T 2rhm_A            1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSL   80 (193)
T ss_dssp             CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeE
Confidence            356778999999999999999999999999999998877543211 1100111000000  0012223333334 45678


Q ss_pred             EEcCCCCC------C--CCC--CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           81 IVDYHGCD------F--FPE--RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        81 vid~~~~~------~--~~~--~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      |+|.....      +  +..  ..++.+|||++|++++.+|+.+|+.
T Consensus        81 i~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~  127 (193)
T 2rhm_A           81 IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA  127 (193)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             EEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence            88854410      1  111  1245799999999999999988764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.71  E-value=1.2e-16  Score=113.58  Aligned_cols=155  Identities=15%  Similarity=0.097  Sum_probs=82.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhH----HHhhcccCCCchhhhcccccchHHHHHHHH---HHhhcCCeEE
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGE----LVREKNLHDGWDDELECHVINEDLVCDELE---DIMEQGGNIV   82 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~---~~~~~~~~vi   82 (176)
                      ++|+|+|++||||||+++.|+++++..++.-..    +.+.  ..... .... +......+...++   ..+..+.+|+
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~--~~~~~-~~~~-~~~~~~~~~~r~~~~~~~~~~~~vi~   76 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQ--YYKDL-KKTV-FKMQIYMLTARSKQLKQAKNLENIIF   76 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHH--HTTCH-HHHH-HHHHHHHHHHHHHHHC------CEEE
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHH--HHhCc-cccc-hhHHHHHHHHHHHHHHHhhccCCEEE
Confidence            479999999999999999999999988764210    0000  00000 0000 0000001111112   1223345666


Q ss_pred             cCCCC-------------------------------CCC-----CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchh
Q 030477           83 DYHGC-------------------------------DFF-----PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNI  126 (176)
Q Consensus        83 d~~~~-------------------------------~~~-----~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~  126 (176)
                      |....                               ..+     ....++.+|||++|++++.+|+.+|+++........
T Consensus        77 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~  156 (205)
T 2jaq_A           77 DRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEE  156 (205)
T ss_dssp             ESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHH
T ss_pred             EeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHH
Confidence            64321                               111     012478899999999999999998864211111112


Q ss_pred             HHHHHHHHHHHHHhcCC-CCcEEEecCC-CHHHHHHHHHHHHHH
Q 030477          127 ECEIFQVLLEEAKESYP-EDIVLALKSD-TIEDITRNIAILTDW  168 (176)
Q Consensus       127 ~~~~~~~~~~~~~~~~~-~~~~i~~~~~-s~~ev~~~i~~~~~~  168 (176)
                      ..+.+...+....+.|. ....+.+++. +++++.+.|..+++.
T Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~  200 (205)
T 2jaq_A          157 YWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNS  200 (205)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence            22345555555556664 3233444433 899888888877754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.71  E-value=1.5e-16  Score=115.39  Aligned_cols=158  Identities=15%  Similarity=0.195  Sum_probs=94.0

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-------c-CCCc---hhhhc-------------cc-
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-------L-HDGW---DDELE-------------CH-   60 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-------~-~~~~---~~~~~-------------~~-   60 (176)
                      |+++.+|+|+||+||||||+++.|++++|+.+++.+.+.+...       . ....   .....             .. 
T Consensus         6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~   85 (233)
T 3r20_A            6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAF   85 (233)
T ss_dssp             ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence            4567899999999999999999999999999999999865532       0 0000   00000             00 


Q ss_pred             ---------ccch----------------HHHHHHHHHHhhc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHH
Q 030477           61 ---------VINE----------------DLVCDELEDIMEQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRL  112 (176)
Q Consensus        61 ---------~~~~----------------~~l~~~i~~~~~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~  112 (176)
                               +..+                +.+.+..+.+... +++|++.....  .+|.  .++-|||++|++++.+|.
T Consensus        86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pd--a~lkifl~A~~e~Ra~Rr  163 (233)
T 3r20_A           86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPD--ADVKIFLTASAEERARRR  163 (233)
T ss_dssp             ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTT--CSEEEEEECCHHHHHHHH
T ss_pred             ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCC--CCEEEEEECCHHHHHHHH
Confidence                     0001                2244444445555 78999876443  5565  568999999999999988


Q ss_pred             hhc----CCCCccccchhHHHHHHHHHHHHH---hcCCC-C--cEEEecCCCHHHHHHHHHHHHH
Q 030477          113 TKR----GYTGAKLTNNIECEIFQVLLEEAK---ESYPE-D--IVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       113 ~~r----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~--~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      .++    +..  ...+....+....-.....   .++.. +  .+|+++..+++++.+.|..+++
T Consensus       164 ~~~l~~~~~~--~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~  226 (233)
T 3r20_A          164 NAQNVANGLP--DDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVT  226 (233)
T ss_dssp             HHHHHHTTCC--CCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC-
T ss_pred             HHHHHhccCC--CCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHH
Confidence            653    221  1111221111111111111   12222 2  7788887899999888887764

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.71  E-value=2.4e-16  Score=112.42  Aligned_cols=157  Identities=16%  Similarity=0.144  Sum_probs=92.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CC----Cchhhhccccc------ch----------
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HD----GWDDELECHVI------NE----------   64 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~------~~----------   64 (176)
                      ...+.-|.|+|.+||||||+++.|++ +|++++|+|.+.+.... ..    .....+...++      +.          
T Consensus         6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d   84 (210)
T 4i1u_A            6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD   84 (210)
T ss_dssp             CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence            34678899999999999999999987 99999999998776421 11    11111111111      11          


Q ss_pred             HH------------HHHHHHHHhh--c-CCeEEcCCCCCCCC-C---CcccEEEEEeCChHHHHHHHhhcCCCCccccch
Q 030477           65 DL------------VCDELEDIME--Q-GGNIVDYHGCDFFP-E---RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN  125 (176)
Q Consensus        65 ~~------------l~~~i~~~~~--~-~~~vid~~~~~~~~-~---~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~  125 (176)
                      ..            +.+.+...+.  + .-+++|...  ++. .   ..+|.+|+++||++++.+|+.+|+.   ...+.
T Consensus        85 ~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pL--L~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg---~s~ee  159 (210)
T 4i1u_A           85 EDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPL--LVESRNWKARCDRVLVVDCPVDTQIARVMQRNG---FTREQ  159 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTT--CTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHC---CCHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEec--ccccCCccccCCeEEEEECCHHHHHHHHHhcCC---CCHHH
Confidence            11            1112222221  2 235667543  333 1   2478999999999999999998852   11111


Q ss_pred             hHHHHHHHHHHHHHhcCCC-CcEEEecC-CCHHHHHHHHHHHHHHHHh
Q 030477          126 IECEIFQVLLEEAKESYPE-DIVLALKS-DTIEDITRNIAILTDWVRN  171 (176)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~-~s~~ev~~~i~~~~~~~~~  171 (176)
                      ... ++...... .+.+.. +.+|+ |+ ++.+++.+.+..+++.+..
T Consensus       160 a~~-ri~~Q~~~-eek~~~AD~VId-N~~gsle~l~~qV~~l~~~~~~  204 (210)
T 4i1u_A          160 VEA-IIARQATR-EARLAAADDVIV-NDAATPDALAVQVDALHQRYLA  204 (210)
T ss_dssp             HHH-HHHHSCCH-HHHHHTCSEEEE-CSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHcCCh-HHHHHhCCEEEE-CCCCCHHHHHHHHHHHHHHHHH
Confidence            111 11111111 111222 34554 45 6899999999999877654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.70  E-value=3.3e-16  Score=111.71  Aligned_cols=156  Identities=15%  Similarity=0.197  Sum_probs=85.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC---------chhh------------hcccccch-H--
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG---------WDDE------------LECHVINE-D--   65 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~---------~~~~------------~~~~~~~~-~--   65 (176)
                      .+|.|+|++||||||+++.|++ +|+++++.|++.+.......         ++..            ....++.. +  
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            5799999999999999999988 99999999998765321000         0000            00001110 0  


Q ss_pred             ---------HHHHHHHHHh---hcCCeEEcCCCCCCC-CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477           66 ---------LVCDELEDIM---EQGGNIVDYHGCDFF-PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ  132 (176)
Q Consensus        66 ---------~l~~~i~~~~---~~~~~vid~~~~~~~-~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~  132 (176)
                               .+...+...+   .++.+|++.+...-. -...++.+|||++|++++.+|+..|+.   ...+... .++.
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~---~~~e~~~-~r~~  157 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDN---NNFEQIQ-RIMN  157 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC--------CHHHHH-HHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHH-HHHH
Confidence                     0111111112   234567775432111 012367899999999999999988741   1111111 1111


Q ss_pred             HHHHHHHhcCC-CCcEEEecCCCHH----HHHHHHHHHHHHHHhh
Q 030477          133 VLLEEAKESYP-EDIVLALKSDTIE----DITRNIAILTDWVRNW  172 (176)
Q Consensus       133 ~~~~~~~~~~~-~~~~i~~~~~s~~----ev~~~i~~~~~~~~~~  172 (176)
                      ... ...+.|. .+.+|+.++ +++    ++.+.+..+++.+..+
T Consensus       158 ~q~-~~~~~~~~ad~vIdn~~-~~~~~~~~~~~~i~~~~~~~~~~  200 (206)
T 1jjv_A          158 SQV-SQQERLKWADDVINNDA-ELAQNLPHLQQKVLELHQFYLQQ  200 (206)
T ss_dssp             HSC-CHHHHHHHCSEEEECCS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcC-ChHHHHHhCCEEEECCC-CccccHHHHHHHHHHHHHHHHHh
Confidence            100 1122222 245555554 899    9999999888766554

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.70  E-value=1.4e-15  Score=108.35  Aligned_cols=146  Identities=15%  Similarity=0.109  Sum_probs=88.2

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-----CCCch--hh-------hc----------cc------
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-----HDGWD--DE-------LE----------CH------   60 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-----~~~~~--~~-------~~----------~~------   60 (176)
                      +|+|+|++||||||+++.|++.+|+++++.|++.+....     ...+.  ..       +.          ..      
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            899999999999999999999999999999998764310     00000  00       00          00      


Q ss_pred             ccc---hH-------------HHHHHHHH---HhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCC
Q 030477           61 VIN---ED-------------LVCDELED---IMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTG  119 (176)
Q Consensus        61 ~~~---~~-------------~l~~~i~~---~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~  119 (176)
                      ++.   ..             .+.+.+..   .+. +++|++.....  .++.  ++.+|||++|++++.+|+..|..  
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~~~~~~~--~d~~i~l~a~~e~~~~R~~~r~~--  158 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMGTAVFPE--AAHKFYLTASPEVRAWRRARERP--  158 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCCCCCCTT--CSEEEEEECCHHHHHHHHHHTSS--
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEccceeEEEecC--CcEEEEEECCHHHHHHHHHhhcc--
Confidence            000   00             11112211   123 67888865433  2332  67899999999999999988753  


Q ss_pred             ccccchhHHHHHHHHHHHHHhcC----CC--C-cEEEecCCCHHHHHHHHHHHHH
Q 030477          120 AKLTNNIECEIFQVLLEEAKESY----PE--D-IVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~----~~--~-~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                        ..  .  +.....+..+.+.+    ..  + .+|+++..+++++.+.|..+++
T Consensus       159 --~~--~--~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          159 --QA--Y--EEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             --SC--H--HHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             --cC--H--HHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence              11  1  12333333333333    22  3 5555554589999888877653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.69  E-value=3.1e-15  Score=106.82  Aligned_cols=161  Identities=14%  Similarity=0.101  Sum_probs=90.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCchhhhcc----cccchHHHHHHHHHHhh----
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWDDELEC----HVINEDLVCDELEDIME----   76 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~i~~~~~----   76 (176)
                      ..++.+|+|+|++||||||+++.|++.+ ++.+++.|+++............+..    ..++...+.+.+...+.    
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~   97 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESARH   97 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCC
Confidence            3566789999999999999999999988 89999999876533211100000000    01122334443333221    


Q ss_pred             ------------cCCeEEcCCCCCCCC--CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHH--HHHh
Q 030477           77 ------------QGGNIVDYHGCDFFP--ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLE--EAKE  140 (176)
Q Consensus        77 ------------~~~~vid~~~~~~~~--~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~  140 (176)
                                  ...+++|.......+  ...++.++|+++|++++.+|+..|++..+...+......+..+..  +...
T Consensus        98 ~~~~~~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~  177 (207)
T 2qt1_A           98 SVVSTDQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQ  177 (207)
T ss_dssp             SSCCC-----CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGG
T ss_pred             CCcCCCeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHH
Confidence                        234566753211110  124688999999999999999888754332221111111111111  1112


Q ss_pred             cCCCCcEEEecCC-CHHHHHHHHHHHHH
Q 030477          141 SYPEDIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       141 ~~~~~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                      .+. +.++.+++. +++++.+.+...++
T Consensus       178 ~~~-~~v~~Id~~~~~eev~~~I~~~l~  204 (207)
T 2qt1_A          178 DIT-WEVVYLDGTKSEEDLFLQVYEDLI  204 (207)
T ss_dssp             GCS-SCCEEEETTSCHHHHHHHHHHHHT
T ss_pred             hcC-CeEEEecCCCCHHHHHHHHHHHHH
Confidence            222 345445544 89888888877664

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.68  E-value=6.4e-16  Score=111.62  Aligned_cols=155  Identities=12%  Similarity=0.107  Sum_probs=91.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc----c----CCCchhhhcc-ccc----------------
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN----L----HDGWDDELEC-HVI----------------   62 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~----~----~~~~~~~~~~-~~~----------------   62 (176)
                      ++.+|.|+|++||||||+++.||+++|+++++ .+++....    +    +...++.... +++                
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~   91 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP   91 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence            45789999999999999999999999999999 55443321    1    1111111111 100                


Q ss_pred             -----chHHHH----HHHHHHhhcCCeEEcCCCCC-CC---CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHH
Q 030477           63 -----NEDLVC----DELEDIMEQGGNIVDYHGCD-FF---PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE  129 (176)
Q Consensus        63 -----~~~~l~----~~i~~~~~~~~~vid~~~~~-~~---~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~  129 (176)
                           ..+.++    +.++.+...+++|+...... .+   +.....++|||++|++++.+|+.++..   ...+.. .+
T Consensus        92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~---~~~~~a-~~  167 (223)
T 3hdt_A           92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDIERLIRIFVYTDKVKKVQRVMEVDC---IDEERA-KR  167 (223)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTCCEEEEEEEECCHHHHHHHHHHHHT---CCHHHH-HH
T ss_pred             ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCCCCeEEEEEECCHHHHHHHHHHhcC---CCHHHH-HH
Confidence                 011222    33344445567777643322 23   332235799999999999999986531   111122 12


Q ss_pred             HHHHHHHHHHhcCC------------CCcEEEecCCCHHHHHHHHHHHHH
Q 030477          130 IFQVLLEEAKESYP------------EDIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       130 ~~~~~~~~~~~~~~------------~~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      .+......+.+.|.            .+.+|+++..+++++.+.|...++
T Consensus       168 ~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~  217 (223)
T 3hdt_A          168 RIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR  217 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence            34444444444443            367888877799999888887765

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.68  E-value=1.2e-16  Score=114.53  Aligned_cols=164  Identities=16%  Similarity=0.062  Sum_probs=79.2

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH------------Hhhccc-CCCchhhhcccccchH--HH
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL------------VREKNL-HDGWDDELECHVINED--LV   67 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~--~l   67 (176)
                      +|+|.++++|+|+|+|||||||+++.|+++++..+++.+.+            ++.... ...+.......++..+  ..
T Consensus         3 ~m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~   82 (215)
T 1nn5_A            3 HMAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQ   82 (215)
T ss_dssp             ----CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTT
T ss_pred             cccccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999875443332111            111000 0011110000000000  00


Q ss_pred             HHHHHHHhhc-CCeEEcCCC--------------CC---CCCC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhH
Q 030477           68 CDELEDIMEQ-GGNIVDYHG--------------CD---FFPE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE  127 (176)
Q Consensus        68 ~~~i~~~~~~-~~~vid~~~--------------~~---~~~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~  127 (176)
                      ++.+...+.. ..+|+|...              .+   .+..  ..++.+|||++|++++.+|+..|.   ...+....
T Consensus        83 ~~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~---~~~~~~~~  159 (215)
T 1nn5_A           83 VPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH---ERYENGAF  159 (215)
T ss_dssp             HHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC--------CTTCSHHH
T ss_pred             HHHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc---cccchHHH
Confidence            1223333333 346667210              00   0111  136889999999999999996431   12222111


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEec-CCCHHHHHHHHHHHHHHHH
Q 030477          128 CEIFQVLLEEAKESYPEDIVLALK-SDTIEDITRNIAILTDWVR  170 (176)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~ev~~~i~~~~~~~~  170 (176)
                      .+.+...+......+.. .++.++ +.+++++.+.|..+++.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~-~~~~Id~~~~~e~~~~~i~~~l~~~l  202 (215)
T 1nn5_A          160 QERALRCFHQLMKDTTL-NWKMVDASKSIEAVHEDIRVLSEDAI  202 (215)
T ss_dssp             HHHHHHHHHHHTTCTTS-CEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CEEEEECCCCHHHHHHHHHHHHHHHH
Confidence            22333333333333322 233333 3489999999888886553

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.68  E-value=1.5e-15  Score=110.69  Aligned_cols=156  Identities=16%  Similarity=0.220  Sum_probs=90.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcc-----cCCCch------h--------------------
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKN-----LHDGWD------D--------------------   55 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~-----~~~~~~------~--------------------   55 (176)
                      .++.+|+|+|++||||||+++.|++++|+++++.|++.+...     ....+.      .                    
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~   93 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF   93 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence            467799999999999999999999999999999999886521     000100      0                    


Q ss_pred             -hhcccc--cchHHH-----------------HHHHHHHhhcCCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHH-
Q 030477           56 -ELECHV--INEDLV-----------------CDELEDIMEQGGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRL-  112 (176)
Q Consensus        56 -~~~~~~--~~~~~l-----------------~~~i~~~~~~~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~-  112 (176)
                       ....+.  +..+.+                 .+.+..+..++++|++.....  .++.  .+.+|||++|++++.+|+ 
T Consensus        94 ~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~~l~~--~d~vi~L~a~~e~~~~R~~  171 (236)
T 1q3t_A           94 VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTVVLPQ--AELKIFLVASVDERAERRY  171 (236)
T ss_dssp             ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSSSGGG--CSEEEEEECCHHHHHHHHH
T ss_pred             ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhhhccC--CCEEEEEECCHHHHHHHHH
Confidence             000000  111111                 111222334567888865433  3433  578999999999999997 


Q ss_pred             ---hhcCCCCccccchhHHHHHHH-HHHHH----HhcCCC-C-cEEEecCCCHHHHHHHHHHHHH
Q 030477          113 ---TKRGYTGAKLTNNIECEIFQV-LLEEA----KESYPE-D-IVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       113 ---~~r~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~-~-~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                         ..|+..  ...+.... .+.. .....    .+.|.. + .+|++++.+++++.+.|..+++
T Consensus       172 ~~~~~R~~~--~~~e~~~~-~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~l~  233 (236)
T 1q3t_A          172 KENIAKGIE--TDLETLKK-EIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEAE  233 (236)
T ss_dssp             HHHHHTTCC--CCHHHHHH-HHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCC--CCHHHHHH-HHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence               445431  11111111 1111 11100    123433 3 5555554589999998887765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.68  E-value=1.1e-15  Score=106.89  Aligned_cols=151  Identities=20%  Similarity=0.195  Sum_probs=79.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe-ehhHH---HhhcccCCCchhhhcccccchHHHHHHHHHHhh--cCCeE
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI-NIGEL---VREKNLHDGWDDELECHVINEDLVCDELEDIME--QGGNI   81 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~v   81 (176)
                      ++++|+|+|+|||||||+++.|++++|++++ +.+.+   ++.... .. ...+...-...+.+.+.+...+.  ++.++
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~-~g-~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi   81 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTP-GF-SGDPQEHPMWIPLMLDALQYASREAAGPLI   81 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTST-TC-CSCGGGSTTHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCc-cc-cchhhhhHHHHHHHHHHHHHHHHhCCCcEE
Confidence            6789999999999999999999999999988 53221   222111 11 00110000000223344444443  33456


Q ss_pred             EcCCCCC---------CCCCC-cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEec
Q 030477           82 VDYHGCD---------FFPER-WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALK  151 (176)
Q Consensus        82 id~~~~~---------~~~~~-~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  151 (176)
                      +|.....         .+... ..-..|||++|++++.+|+..|+.. + ..    .+.+..++....+. ....+|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r-~-~~----~~~~~~~~~~~~~~-~~~~~Id~~  154 (183)
T 2vli_A           82 VPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQP-Q-VN----VGTVEDRLNELRGE-QFQTHIDTA  154 (183)
T ss_dssp             EEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC------CC----HHHHHHHHHHHTSG-GGCSEEECT
T ss_pred             EeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcccc-c-hh----HHHHHHHHHhhccc-ccceEeeCC
Confidence            6743211         11101 1123599999999999999987632 2 11    12344444444332 223467666


Q ss_pred             CCCHHHHHHHHHHHHH
Q 030477          152 SDTIEDITRNIAILTD  167 (176)
Q Consensus       152 ~~s~~ev~~~i~~~~~  167 (176)
                      +.+++++.+.|...+.
T Consensus       155 ~~~~~~~~~~I~~~l~  170 (183)
T 2vli_A          155 GLGTQQVAEQIAAQVG  170 (183)
T ss_dssp             TCCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            5689998888877764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.68  E-value=1.1e-15  Score=112.90  Aligned_cols=149  Identities=18%  Similarity=0.233  Sum_probs=84.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh---cCCeEe--ehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCe
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES---TQLRHI--NIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGN   80 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~---l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~   80 (176)
                      |.++++|+|+|+|||||||+++.|++.   +|++++  +.|.+......   +.......+.  ......+...+....+
T Consensus         1 M~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~---~~~~~e~~~~--~~~~~~i~~~l~~~~v   75 (260)
T 3a4m_A            1 MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV---WKEKYEEFIK--KSTYRLIDSALKNYWV   75 (260)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS---CCGGGHHHHH--HHHHHHHHHHHTTSEE
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh---hhHHHHHHHH--HHHHHHHHHHhhCCEE
Confidence            356789999999999999999999998   688887  76766433221   2211111111  1122333344444667


Q ss_pred             EEcCCCCCC-----CCC-----CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHH---hcCC---C
Q 030477           81 IVDYHGCDF-----FPE-----RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAK---ESYP---E  144 (176)
Q Consensus        81 vid~~~~~~-----~~~-----~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~  144 (176)
                      |+|......     +..     ..++.+|||++|++++.+|+.+|+..  . .    .+.+..+.....   +.|.   .
T Consensus        76 IiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~--~-~----~~~l~~~~~~~e~~~~~~~~~~~  148 (260)
T 3a4m_A           76 IVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEK--I-P----NEVIKKMYEKFDEPGKKYKWDEP  148 (260)
T ss_dssp             EECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCS--S-C----HHHHHHHHHHCCCTTSSCGGGCC
T ss_pred             EEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCC--C-C----HHHHHHHHHHhcCccccCCCCCC
Confidence            888532110     000     12468999999999999999988631  1 1    122333322222   1221   2


Q ss_pred             CcEEEecC-CCHHHHHHHHHHHH
Q 030477          145 DIVLALKS-DTIEDITRNIAILT  166 (176)
Q Consensus       145 ~~~i~~~~-~s~~ev~~~i~~~~  166 (176)
                      ..+++++. .+++++.+.|...+
T Consensus       149 ~~~Id~~~~~~~~ei~~~I~~~l  171 (260)
T 3a4m_A          149 FLIIDTTKDIDFNEIAKKLIEKS  171 (260)
T ss_dssp             SEEEETTSCCCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHhcc
Confidence            45555554 26777766665543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.67  E-value=9.5e-16  Score=110.31  Aligned_cols=41  Identities=27%  Similarity=0.378  Sum_probs=35.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK   47 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~   47 (176)
                      |.++.+|+|+|++||||||+++.|++ +|+++++.|++.+..
T Consensus         1 M~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~   41 (218)
T 1vht_A            1 MSLRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQV   41 (218)
T ss_dssp             -CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHH
Confidence            34567999999999999999999988 999999999987653

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.67  E-value=6.8e-15  Score=106.80  Aligned_cols=159  Identities=14%  Similarity=0.095  Sum_probs=85.2

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeehhHHHhhcccCCCchhhhcccc-----cch--HHHH---HHH-
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINIGELVREKNLHDGWDDELECHV-----INE--DLVC---DEL-   71 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~l~---~~i-   71 (176)
                      .+.++.+|+|.|++||||||+++.|++.++  ..++....    +. ....+.....++     ...  ..++   ... 
T Consensus        22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~----p~-~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~   96 (229)
T 4eaq_A           22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE----PG-GVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE   96 (229)
T ss_dssp             CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECT----TT-TCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecC----CC-CCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            345778999999999999999999999986  45543211    00 011111111111     111  1111   111 


Q ss_pred             ------HHHhhc-CCeEEcC-----CCCCCCCC-----------------CcccEEEEEeCChHHHHHHHhhcCCCCccc
Q 030477           72 ------EDIMEQ-GGNIVDY-----HGCDFFPE-----------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKL  122 (176)
Q Consensus        72 ------~~~~~~-~~~vid~-----~~~~~~~~-----------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~  122 (176)
                            ...+.. ..+|+|.     .....+++                 ..++.+|||++|++++.+|+.+|+....+.
T Consensus        97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~  176 (229)
T 4eaq_A           97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRL  176 (229)
T ss_dssp             HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CC
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccch
Confidence                  112223 3456671     01111111                 147899999999999999999987543444


Q ss_pred             cch--hHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          123 TNN--IECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       123 ~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                      +..  ...+++...+......|. ..++.+++. +++++.+.|..+++.+
T Consensus       177 e~~~~~~~~rv~~~y~~l~~~~~-~~~~vIDa~~s~eev~~~I~~~l~~~  225 (229)
T 4eaq_A          177 DQEDLKFHEKVIEGYQEIIHNES-QRFKSVNADQPLENVVEDTYQTIIKY  225 (229)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTCT-TTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            321  112233333443333343 345555554 8999999998888654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.67  E-value=8.7e-16  Score=107.00  Aligned_cols=147  Identities=16%  Similarity=0.085  Sum_probs=82.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHHHhhcccC-CCc--hhhhccc--ccc-------hHHHHHHHHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHI--NIGELVREKNLH-DGW--DDELECH--VIN-------EDLVCDELEDI   74 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~~~~~~~~-~~~--~~~~~~~--~~~-------~~~l~~~i~~~   74 (176)
                      +++|+|+|+|||||||+++.|+++++.+++  +.|++....... ...  +..+...  ...       ...+...+...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM   82 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHHH
Confidence            578999999999999999999999987766  467765432211 000  0000000  000       11222233444


Q ss_pred             hhc-CCeEEcCCCCC----------CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC
Q 030477           75 MEQ-GGNIVDYHGCD----------FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP  143 (176)
Q Consensus        75 ~~~-~~~vid~~~~~----------~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (176)
                      ... ..+|++.....          .+. .....+|||+||++++.+|+.+|+......   .     ...... ...|.
T Consensus        83 ~~~g~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~v~l~~~~e~l~~R~~~r~~~~~~~---~-----~~~~~~-~~~~~  152 (178)
T 1qhx_A           83 ARAGARIIIDDVFLGGAAAQERWRSFVG-DLDVLWVGVRCDGAVAEGRETARGDRVAGM---A-----AKQAYV-VHEGV  152 (178)
T ss_dssp             HHTTCEEEEEECCTTTHHHHHHHHHHHT-TCCEEEEEEECCHHHHHHHHHHTSSSCTTH---H-----HHHTTG-GGTTC
T ss_pred             HhcCCeEEEEeccccChHHHHHHHHHhc-CCcEEEEEEECCHHHHHHHHHhhCCcccch---h-----hhhchh-hccCC
Confidence            433 35777753211          111 112357889999999999999886422111   0     001111 11232


Q ss_pred             -CCcEEEecCCCHHHHHHHHHHH
Q 030477          144 -EDIVLALKSDTIEDITRNIAIL  165 (176)
Q Consensus       144 -~~~~i~~~~~s~~ev~~~i~~~  165 (176)
                       .+.++++++.+++++.+.|...
T Consensus       153 ~~d~~idt~~~~~~~~~~~I~~~  175 (178)
T 1qhx_A          153 EYDVEVDTTHKESIECAWAIAAH  175 (178)
T ss_dssp             CCSEEEETTSSCHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCHHHHHHHHHHH
Confidence             3677777777898887776543

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.66  E-value=3e-15  Score=106.86  Aligned_cols=159  Identities=13%  Similarity=0.052  Sum_probs=81.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCe--Eeeh----hHHHhhcccC-C---CchhhhcccccchH---HHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLR--HINI----GELVREKNLH-D---GWDDELECHVINED---LVCDELED   73 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~--~~~~----~~~~~~~~~~-~---~~~~~~~~~~~~~~---~l~~~i~~   73 (176)
                      +++++|+|+|+|||||||+++.|+++++..  ++..    ++.++..... .   .+.......++..+   .+.+.+..
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~   81 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILP   81 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999998763  4432    2222211000 0   01110000000000   11111222


Q ss_pred             Hhh-cCCeEEcCCC--------------------CCCCCCCcccEEEEEeCChHHHHHHHh-hcCCCCc--------ccc
Q 030477           74 IME-QGGNIVDYHG--------------------CDFFPERWFDRVVVLQTENSVLYDRLT-KRGYTGA--------KLT  123 (176)
Q Consensus        74 ~~~-~~~~vid~~~--------------------~~~~~~~~~~~vi~l~~~~~~~~~R~~-~r~~~~~--------~~~  123 (176)
                      .+. +..+|+|...                    ...++  .++.+|||++|++++.+|+. .|+....        ...
T Consensus        82 ~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~  159 (213)
T 2plr_A           82 MLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAI--KPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGL  159 (213)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSC--CCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTS
T ss_pred             HHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCC--CCCEEEEEeCCHHHHHHHHhccccccccccccccccccc
Confidence            333 3456777421                    11122  26789999999999999998 7762111        000


Q ss_pred             chhHH-----HHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477          124 NNIEC-----EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       124 ~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                      +..+.     .++...+......+ ...+|+.+ .+++++.+.|..+++.+
T Consensus       160 d~~e~~~~~~~r~~~~~~~~~~~~-~~~~Id~~-~~~e~v~~~I~~~l~~~  208 (213)
T 2plr_A          160 SPEEGFLKYQGLITEVYDKLVKDE-NFIVIDGT-KTPKEIQIQIRKFVGEL  208 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTT-TCEEEETT-SCHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHhhC-CEEEEECC-CCHHHHHHHHHHHHHHH
Confidence            00111     12222222222222 22334332 48999999998887654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.66  E-value=4.6e-16  Score=112.58  Aligned_cols=156  Identities=15%  Similarity=0.119  Sum_probs=83.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc-------CCeEeehhHHHhhcccCCCchhhhccc-------------ccc--
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST-------QLRHINIGELVREKNLHDGWDDELECH-------------VIN--   63 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~--   63 (176)
                      |+++.+|+|.|++||||||+++.|++.+       |..++..    +++. ....++....+             ++.  
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----rep~-~t~~g~~ir~~l~~~~~~~~~~~llf~a~   96 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----REPG-GTRLGETLREILLNQPMDLETEALLMFAG   96 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ESSS-SSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cCCC-CChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4578899999999999999999999988       4444321    2221 11111111111             110  


Q ss_pred             -hHHHHHHHHHHhhcCCe-EEcCC---------CCCCCCC-------------CcccEEEEEeCChHHHHHHHhhcCCCC
Q 030477           64 -EDLVCDELEDIMEQGGN-IVDYH---------GCDFFPE-------------RWFDRVVVLQTENSVLYDRLTKRGYTG  119 (176)
Q Consensus        64 -~~~l~~~i~~~~~~~~~-vid~~---------~~~~~~~-------------~~~~~vi~l~~~~~~~~~R~~~r~~~~  119 (176)
                       .+.+.+.+...+..+.+ |.|..         ....++.             ..||++|||++|++++.+|+.+|+. .
T Consensus        97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-~  175 (227)
T 3v9p_A           97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM-P  175 (227)
T ss_dssp             HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC-C
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC-c
Confidence             01222334434444544 45621         0011111             2489999999999999999998852 2


Q ss_pred             ccccch--hHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHH
Q 030477          120 AKLTNN--IECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDW  168 (176)
Q Consensus       120 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~  168 (176)
                      ...+..  ...+.....+......+. ..++.+|+. +++++.+.|..+++.
T Consensus       176 dr~E~~~~ef~~rv~~~Y~~la~~~~-~~~~vIDa~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          176 DKFESESDAFFARTRAEYLRRAQEAP-HRFVIVDSSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHCT-TTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHhc-CCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            333321  112333344444444453 345556654 899999998887764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.65  E-value=1.3e-15  Score=108.36  Aligned_cols=149  Identities=17%  Similarity=0.218  Sum_probs=82.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC---------Cchhh------------hcccccchHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD---------GWDDE------------LECHVINEDLVC   68 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~---------~~~~~------------~~~~~~~~~~l~   68 (176)
                      ++|+|+|++||||||+++.|++ +|+++++.|++.+......         .++..            ....++......
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            5899999999999999999999 9999999999876532100         00000            001111111111


Q ss_pred             HH------------HHHHh---hc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477           69 DE------------LEDIM---EQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI  130 (176)
Q Consensus        69 ~~------------i~~~~---~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~  130 (176)
                      ..            +...+   .+ +.+|+|.....  .+ ...++.+|||++|++++.+|+..|+...    +.. .++
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~-~~~~~~~i~l~~~~e~~~~Rl~~R~~~~----~~~-~~~  154 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGT-YKNYDKLIVVYAPYEVCKERAIKRGMSE----EDF-ERR  154 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTC-GGGSSEEEEECCCHHHHHHHHHHTCCCH----HHH-HHH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCCc-hhhCCEEEEEECCHHHHHHHHHHcCCCH----HHH-HHH
Confidence            11            11111   22 45677764321  11 1236789999999999999999884311    111 011


Q ss_pred             HHHHHHHHHhcCC-CCcEEEecCCCHHHHHHHHHHHHH
Q 030477          131 FQVLLEEAKESYP-EDIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       131 ~~~~~~~~~~~~~-~~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      +...... .+.+. .+.+|+.+ .+++++.+.+..+++
T Consensus       155 ~~~~~~~-~~~~~~ad~vId~~-~~~~~~~~~i~~~l~  190 (204)
T 2if2_A          155 WKKQMPI-EEKVKYADYVIDNS-GSIEETYKQVKKVYE  190 (204)
T ss_dssp             HTTSCCH-HHHGGGCSEECCCS-SCHHHHHHHHHHHHH
T ss_pred             HHhCCCh-hHHHhcCCEEEECC-CCHHHHHHHHHHHHH
Confidence            1111110 11111 13443332 488888888877765

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.65  E-value=2.8e-15  Score=105.99  Aligned_cols=143  Identities=19%  Similarity=0.236  Sum_probs=83.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc------CCCchhh-----------hccccc-chHH---
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL------HDGWDDE-----------LECHVI-NEDL---   66 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~------~~~~~~~-----------~~~~~~-~~~~---   66 (176)
                      ...+|.|+|++||||||+++.|++.+|++++++|++.+....      ...++..           ....++ +.+.   
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~   90 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKK   90 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHH
Confidence            457899999999999999999999889999999999765421      0111110           111111 1110   


Q ss_pred             --------HHHHHHHHhh--cCCeEEcCCCC--CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHH
Q 030477           67 --------VCDELEDIME--QGGNIVDYHGC--DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVL  134 (176)
Q Consensus        67 --------l~~~i~~~~~--~~~~vid~~~~--~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~  134 (176)
                              +...+.....  ++.+|+|....  ..+. ..++.+||+++|++++.+|+.         .    . .+..+
T Consensus        91 l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~~~~-~~~d~vi~v~a~~e~r~~Rli---------~----~-q~~~~  155 (192)
T 2grj_A           91 LELLVHPLMKKRVQEIINKTSGLIVIEAALLKRMGLD-QLCDHVITVVASRETILKRNR---------E----A-DRRLK  155 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTTTGG-GGCSEEEEEECCHHHHHHHCS---------S----H-HHHHT
T ss_pred             HHhhhCHHHHHHHHHHHHHcCCEEEEEEeceeecChH-HhCCEEEEEECCHHHHHHHHH---------H----h-cCCch
Confidence                    1111111121  22456675421  1111 236789999999999999981         0    0 01000


Q ss_pred             HHHHHhcCCC-CcEEEecCCCHHHHHHHHHHHHHHH
Q 030477          135 LEEAKESYPE-DIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       135 ~~~~~~~~~~-~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                      +   .+.... +.+|+ |+.+++++.+.+.++++.+
T Consensus       156 ~---~~~~~~AD~vI~-n~~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          156 F---QEDIVPQGIVVA-NNSTLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             T---CTTCCCCSEEEE-CSSCHHHHHHHHHHHHHHH
T ss_pred             h---hhHHhcCCEEEE-CCCCHHHHHHHHHHHHHHH
Confidence            0   112222 44544 4468999999999988776

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.64  E-value=1.1e-15  Score=111.24  Aligned_cols=163  Identities=18%  Similarity=0.179  Sum_probs=84.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc---CCe-Eeeh--------hHHHhhcccC----CCchhhhccccc---chHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST---QLR-HINI--------GELVREKNLH----DGWDDELECHVI---NEDL   66 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l---~~~-~~~~--------~~~~~~~~~~----~~~~~~~~~~~~---~~~~   66 (176)
                      .+++.+|+|.|++||||||+++.|++.+   |+. ++..        ++.++.....    ..+.......++   ..+.
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~  103 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL  103 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999987   343 2211        1111111100    011111111111   1122


Q ss_pred             HHHHHHHHhhcCCe-EEcCC--------CC-CCCC-------------CCcccEEEEEeCChHHHHHHHhhcCCCCcccc
Q 030477           67 VCDELEDIMEQGGN-IVDYH--------GC-DFFP-------------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLT  123 (176)
Q Consensus        67 l~~~i~~~~~~~~~-vid~~--------~~-~~~~-------------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~  123 (176)
                      +.+.+...+..+.+ |.|..        .. ..++             ...||++|||++|++++.+|+.+|+.. .+.+
T Consensus       104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~-dr~E  182 (236)
T 3lv8_A          104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL-DRIE  182 (236)
T ss_dssp             HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC-CTTT
T ss_pred             HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc-chhh
Confidence            23334444444544 44521        00 0111             024899999999999999999988631 2222


Q ss_pred             c--hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHHHh
Q 030477          124 N--NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWVRN  171 (176)
Q Consensus       124 ~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~~  171 (176)
                      .  ....+.....+......+..  ++.+|+. +++++.+.|..+++.+..
T Consensus       183 ~~~~~~~~rv~~~y~~la~~~~~--~~vIDa~~sieeV~~~I~~~l~~~l~  231 (236)
T 3lv8_A          183 KMDISFFERARERYLELANSDDS--VVMIDAAQSIEQVTADIRRALQDWLS  231 (236)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHCTT--EEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            2  12223344444444443443  5556654 899999999988876543

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.64  E-value=1.3e-14  Score=104.17  Aligned_cols=160  Identities=17%  Similarity=0.162  Sum_probs=88.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CC-eEeeh--------hHHHhhccc--C----CCchhhhccccc---chHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QL-RHINI--------GELVREKNL--H----DGWDDELECHVI---NEDL   66 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~-~~~~~--------~~~~~~~~~--~----~~~~~~~~~~~~---~~~~   66 (176)
                      ++++|+|.|++||||||+++.|++.+   |+ .++..        ++.++....  .    ..+.......++   +.+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~   81 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL   81 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHH
Confidence            57899999999999999999999987   44 32211        111221111  0    111111111111   1122


Q ss_pred             HHHHHHHHhhcCCeEE-cCC-------C--CCCCCC-------------CcccEEEEEeCChHHHHHHHhhcCCCCcccc
Q 030477           67 VCDELEDIMEQGGNIV-DYH-------G--CDFFPE-------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLT  123 (176)
Q Consensus        67 l~~~i~~~~~~~~~vi-d~~-------~--~~~~~~-------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~  123 (176)
                      +.+.|...+..+.+|| |..       +  ...++.             ..||++|||++|++++.+|+.+|+.. .+.+
T Consensus        82 ~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~-dr~E  160 (213)
T 4tmk_A           82 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL-DRIE  160 (213)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC-CTTT
T ss_pred             HHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc-cchh
Confidence            3333444455555544 521       0  001111             14899999999999999999988642 2232


Q ss_pred             c--hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHHH
Q 030477          124 N--NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWVR  170 (176)
Q Consensus       124 ~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~  170 (176)
                      .  ....+.....+......+  ..++.+|+. ++++|.+.|..+++.+.
T Consensus       161 ~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~~s~eeV~~~I~~~l~~~l  208 (213)
T 4tmk_A          161 QESFDFFNRTRARYLELAAQD--KSIHTIDATQPLEAVMDAIRTTVTHWV  208 (213)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTC--TTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHC--CcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            1  111223333343333333  345556655 89999999998886553

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.64  E-value=6.5e-16  Score=113.68  Aligned_cols=107  Identities=14%  Similarity=0.115  Sum_probs=68.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCe----------EeehhHHHhhcccCCCch-hhhcccc------cchHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLR----------HINIGELVREKNLHDGWD-DELECHV------INEDLVCD   69 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~l~~   69 (176)
                      .++.+|+|+|++||||||+|+.|++.+|++          +++.|++.+..... ... .....+.      ++.+.+.+
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~-~~~~~~~g~~~f~~~~~~d~~~l~~   98 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSE-QKAKALKGQFNFDHPDAFDNELILK   98 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHH-HHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChh-hhhhhccCCCCCCCcchhhHHHHHH
Confidence            456789999999999999999999999987          79999987632110 000 0001111      22233445


Q ss_pred             HHHHHhh-------------------------cCCeEEcCCCCCCCCC----CcccEEEEEeCChHHHHHHHhhcC
Q 030477           70 ELEDIME-------------------------QGGNIVDYHGCDFFPE----RWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        70 ~i~~~~~-------------------------~~~~vid~~~~~~~~~----~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      .++.+..                         ...+|+|...  .+..    ..++.+|||++|++++.+|+..|+
T Consensus        99 ~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~--~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~  172 (252)
T 1uj2_A           99 TLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL--AFYSQEVRDLFQMKLFVDTDADTRLSRRVLRD  172 (252)
T ss_dssp             HHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTT--TTSSHHHHHHCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeec--cccCHHHHHhcCeeEEEeCCHHHHHHHHHHHH
Confidence            5554421                         1345667532  2211    125789999999999999998774

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.63  E-value=1.7e-14  Score=103.59  Aligned_cols=161  Identities=16%  Similarity=0.161  Sum_probs=89.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh--------HHHhhcccCC---Cchhhhcccccc---hHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG--------ELVREKNLHD---GWDDELECHVIN---EDLVCD   69 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~--------~~~~~~~~~~---~~~~~~~~~~~~---~~~l~~   69 (176)
                      +++++|+|.|++||||||+++.|++.+   |+.++...        +.++......   .+.......++.   .+.+.+
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~   83 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAG   83 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999987   45554321        1122111100   111111111111   122233


Q ss_pred             HHHHHhhcCCe-EEcCC-------C-C-CCCC-------------CCcccEEEEEeCChHHHHHHHhhcCCCCccccc--
Q 030477           70 ELEDIMEQGGN-IVDYH-------G-C-DFFP-------------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN--  124 (176)
Q Consensus        70 ~i~~~~~~~~~-vid~~-------~-~-~~~~-------------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~--  124 (176)
                      .+...+..+.+ |.|..       + . ..++             ...||++|||++|++++.+|+.+|+. ....+.  
T Consensus        84 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~-~dr~E~~~  162 (213)
T 4edh_A           84 VIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR-LDRFEQED  162 (213)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS-CCTTTTSC
T ss_pred             HHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC-cCcccccH
Confidence            34434444544 44521       0 0 0111             02489999999999999999998853 122322  


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          125 NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                      ....+.....+......+.. .++.+|+. +++++.+.|..+++.+
T Consensus       163 ~~~~~rv~~~y~~l~~~~~~-~~~vIDa~~s~eeV~~~I~~~l~~~  207 (213)
T 4edh_A          163 RRFFEAVRQTYLQRAAQAPE-RYQVLDAGLPLAEVQAGLDRLLPNL  207 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCC-cEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            12223344444444444543 45556655 8999999998888654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.63  E-value=2.7e-14  Score=101.97  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=82.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc--CCeEeeh--------hHHHhhcccC-CCchhhhcccccc---hHHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST--QLRHINI--------GELVREKNLH-DGWDDELECHVIN---EDLVCDELEDIM   75 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~---~~~l~~~i~~~~   75 (176)
                      ++|+|.|+.||||||+++.|++.|  |..++..        ++.++..... ..+.......++.   .+.+.+.+...+
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l   82 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPAL   82 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999988  5555432        1122221111 1111111111111   122333334444


Q ss_pred             hcCCeEE-cCCC---------CCCCCC-------------CcccEEEEEeCChHHHHHHHhhcCCCCccccch-h-HHHH
Q 030477           76 EQGGNIV-DYHG---------CDFFPE-------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN-I-ECEI  130 (176)
Q Consensus        76 ~~~~~vi-d~~~---------~~~~~~-------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~-~-~~~~  130 (176)
                      ..+.+|| |...         ...++.             ..||++|||++|++++.+|+.+|+....+++.. . ..+.
T Consensus        83 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~~~  162 (205)
T 4hlc_A           83 KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEK  162 (205)
T ss_dssp             HTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHHHHH
T ss_pred             HcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHHHH
Confidence            5555554 5210         001111             148999999999999999999887654444421 1 1122


Q ss_pred             HHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHH
Q 030477          131 FQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDW  168 (176)
Q Consensus       131 ~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~  168 (176)
                      ....+......+. ..++.+|+. ++++|.+.|...+..
T Consensus       163 v~~~Y~~l~~~~~-~~~~~IDa~~~~e~V~~~i~~~i~~  200 (205)
T 4hlc_A          163 VIEGYQEIIHNES-QRFKSVNADQPLENVVEDTYQTIIK  200 (205)
T ss_dssp             HHHHHHHHHHSCC-TTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHHH
Confidence            2223333333333 345566655 899998888777643

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.63  E-value=1.7e-14  Score=101.56  Aligned_cols=152  Identities=18%  Similarity=0.133  Sum_probs=80.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc---CCeEeehhHHH--------hhcccCCCchhhhcccccch---HHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST---QLRHINIGELV--------REKNLHDGWDDELECHVINE---DLVCDELEDIM   75 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~~   75 (176)
                      ++|+|+|+|||||||+++.|++++   |++++++++..        +.......+.......++..   ..+.+.+...+
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~l   80 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPDL   80 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999998   99999875311        00000000000000000011   11111222223


Q ss_pred             hcC-CeEEcCCC---------CCCCC------------C-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477           76 EQG-GNIVDYHG---------CDFFP------------E-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQ  132 (176)
Q Consensus        76 ~~~-~~vid~~~---------~~~~~------------~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~  132 (176)
                      ..+ .+++|...         ...+.            . ..++.+|||++|++++.+|+.+|+.    .+.....++..
T Consensus        81 ~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~----~~~~~~~~~~~  156 (195)
T 2pbr_A           81 KRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNR----FENKEFLEKVR  156 (195)
T ss_dssp             HTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTC----CCCHHHHHHHH
T ss_pred             hCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCc----cchHHHHHHHH
Confidence            333 35556210         00010            0 1378999999999999999986543    11111122333


Q ss_pred             HHHHHHHhcCCCCcEEEecC-CCHHHHHHHHHHHHH
Q 030477          133 VLLEEAKESYPEDIVLALKS-DTIEDITRNIAILTD  167 (176)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~-~s~~ev~~~i~~~~~  167 (176)
                      ..+......|  +.++.+++ .+++++.+.+..+++
T Consensus       157 ~~~~~~~~~~--~~~~~Id~~~~~~~~~~~i~~~l~  190 (195)
T 2pbr_A          157 KGFLELAKEE--ENVVVIDASGEEEEVFKEILRALS  190 (195)
T ss_dssp             HHHHHHHHHS--TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhC--CCEEEEECCCCHHHHHHHHHHHHH
Confidence            3333333334  33344444 489998888887765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.63  E-value=3.8e-16  Score=111.67  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=81.0

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcc--------------cccchH--HHH
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELEC--------------HVINED--LVC   68 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~--~l~   68 (176)
                      +|.++++|+|+|+|||||||+++.|+++++..+++.+ .++.+......+.....              .++..+  ..+
T Consensus         6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (212)
T 2wwf_A            6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM   84 (212)
T ss_dssp             CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred             hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            3557889999999999999999999999876655542 22222100000000000              001000  001


Q ss_pred             HHHHHHh-hcCCeEEcCCCC--------------CCC---CC--CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHH
Q 030477           69 DELEDIM-EQGGNIVDYHGC--------------DFF---PE--RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIEC  128 (176)
Q Consensus        69 ~~i~~~~-~~~~~vid~~~~--------------~~~---~~--~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~  128 (176)
                      +.+...+ .+..+++|....              +.+   ..  ..++.+|||++|++++.+|+..|.   .+.+.....
T Consensus        85 ~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~---~r~~~~~~~  161 (212)
T 2wwf_A           85 NEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE---EIYEKVETQ  161 (212)
T ss_dssp             HHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS---STTCSHHHH
T ss_pred             HHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc---ccccHHHHH
Confidence            1233333 334566663210              000   01  246889999999999999987542   112211111


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477          129 EIFQVLLEEAKESYPEDIVLALKS-DTIEDITRNIAILTDW  168 (176)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~i~~~~-~s~~ev~~~i~~~~~~  168 (176)
                      .++...+.   +.......+.+++ .+++++.+.+..+++.
T Consensus       162 ~~~~~~~~---~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~  199 (212)
T 2wwf_A          162 KKIYETYK---HFAHEDYWINIDATRKIEDIHNDIVKEVTK  199 (212)
T ss_dssp             HHHHHHGG---GGTTCTTEEEEECSSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH---HHhccCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            12212221   1211223344444 4899888888877653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.62  E-value=6.6e-16  Score=107.64  Aligned_cols=106  Identities=23%  Similarity=0.316  Sum_probs=66.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHH-hcCCeEeehhHHHhhcccC-C----CchhhhcccccchHHHHHHHHHHh----hcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAE-STQLRHINIGELVREKNLH-D----GWDDELECHVINEDLVCDELEDIM----EQGG   79 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~-~l~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~l~~~i~~~~----~~~~   79 (176)
                      .+|+|+|+|||||||+++.|++ .+|+.+++.|.+....... .    .+.......+  .+.+.+.+...+    .+.+
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~g~~   80 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV--TGMQFDTAKSILYGGDSVKG   80 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHH--HHHHHHHHHHHHTSCSSCCE
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHH--HHHHHHHHHHHHhhccCCCe
Confidence            5899999999999999999999 6899999987654432211 0    1111111000  122334444444    3456


Q ss_pred             eEEcCCCCCC-----CCC-----CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           80 NIVDYHGCDF-----FPE-----RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        80 ~vid~~~~~~-----~~~-----~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      +|+|......     +..     .....+|||++|++++.+|+..|+.
T Consensus        81 vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  128 (181)
T 1ly1_A           81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (181)
T ss_dssp             EEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence            7888543211     110     0123689999999999999998763

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.62  E-value=1.6e-14  Score=107.87  Aligned_cols=155  Identities=12%  Similarity=0.105  Sum_probs=86.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCC--------chhh------------hcccccch-H
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDG--------WDDE------------LECHVINE-D   65 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~--------~~~~------------~~~~~~~~-~   65 (176)
                      ++.+|+|+|++||||||+|+.|+ ++|++++++|++.+.... ...        ++..            ....++.. +
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~  152 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKK  152 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHH
Confidence            46789999999999999999998 589999999998654211 000        0000            00011111 1


Q ss_pred             H---------------HHHHHHHHhhc--CCeEEcCCCCCCCCC---CcccEEEEEeCChHHHHHHHhhcCCCCccccch
Q 030477           66 L---------------VCDELEDIMEQ--GGNIVDYHGCDFFPE---RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN  125 (176)
Q Consensus        66 ~---------------l~~~i~~~~~~--~~~vid~~~~~~~~~---~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~  125 (176)
                      .               +.+.+......  ..+|+|...  .+..   ..++.+|||++|++++.+|+.+|+.   ...+.
T Consensus       153 ~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~--l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g---~s~e~  227 (281)
T 2f6r_A          153 QMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAM--LLEAGWQSMVHEVWTVVIPETEAVRRIVERDG---LSEAA  227 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTT--TTTTTGGGGCSEEEEEECCHHHHHHHHHHHHC---CCHHH
T ss_pred             HHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEech--hhccchHHhCCEEEEEcCCHHHHHHHHHHcCC---CCHHH
Confidence            0               01111111121  346777643  2221   2368899999999999999998841   11111


Q ss_pred             hHHHHHHHHHHH-HHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHHh
Q 030477          126 IECEIFQVLLEE-AKESYPEDIVLALKSDTIEDITRNIAILTDWVRN  171 (176)
Q Consensus       126 ~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~~  171 (176)
                      .. .++...... ....+ .+.+|+.+ .+++++.+.+..+++.+..
T Consensus       228 ~~-~ri~~q~~~~~~~~~-AD~vIdn~-~s~eel~~~I~~~l~~l~~  271 (281)
T 2f6r_A          228 AQ-SRLQSQMSGQQLVEQ-SNVVLSTL-WESHVTQSQVEKAWNLLQK  271 (281)
T ss_dssp             HH-HHHHTSCCHHHHHHT-CSEEEECS-SCHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHcCChHhhHhh-CCEEEECC-CCHHHHHHHHHHHHHHHHH
Confidence            11 111111100 01011 24555443 4899999999988876643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.62  E-value=3.9e-15  Score=105.80  Aligned_cols=159  Identities=14%  Similarity=0.022  Sum_probs=84.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcc-------cC---CCchhhhcccccchHH--HHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKN-------LH---DGWDDELECHVINEDL--VCDELE   72 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~--l~~~i~   72 (176)
                      |+++++|+|+|++||||||+++.|++++ |+++++.++..+...       .+   ..+.......++..+.  ..+.+.
T Consensus         1 m~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~   80 (204)
T 2v54_A            1 MSRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQ   80 (204)
T ss_dssp             CCCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999998 687776543221110       00   0111000000000000  012233


Q ss_pred             HHhhcC-CeEEcCCC-------------CCC-----CCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHH
Q 030477           73 DIMEQG-GNIVDYHG-------------CDF-----FPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQV  133 (176)
Q Consensus        73 ~~~~~~-~~vid~~~-------------~~~-----~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~  133 (176)
                      ..+..+ .+|+|...             .+.     .....++.+|||++|++++.+   +|+.  ...+.....+++..
T Consensus        81 ~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~--d~~e~~~~~~rl~~  155 (204)
T 2v54_A           81 EQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGE--EIYEDVTFQQKVLQ  155 (204)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSS--STTCCSHHHHHHHH
T ss_pred             HHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCc--ccccHHHHHHHHHH
Confidence            333333 45656210             000     001237899999999999877   4532  11221122234444


Q ss_pred             HHHHHHhcCCCCcEEEecC-CCHHHHHHHHHHHHHHHH
Q 030477          134 LLEEAKESYPEDIVLALKS-DTIEDITRNIAILTDWVR  170 (176)
Q Consensus       134 ~~~~~~~~~~~~~~i~~~~-~s~~ev~~~i~~~~~~~~  170 (176)
                      .+......+.. .++.+++ .+++++.+.|..+++...
T Consensus       156 ~y~~~~~~~~~-~~~~Id~~~~~~~v~~~i~~~l~~~l  192 (204)
T 2v54_A          156 EYKKMIEEGDI-HWQIISSEFEEDVKKELIKNIVIEAI  192 (204)
T ss_dssp             HHHHHHTTCSS-CEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC-cEEEEECCCCHHHHHHHHHHHHHHHH
Confidence            44444443433 3344444 489999999988886543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.62  E-value=3.7e-15  Score=105.76  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=35.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE   46 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~   46 (176)
                      +++.+|+|+|++||||||+++.|++. |+++++.|++.+.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~   44 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAAR   44 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHH
Confidence            46789999999999999999999998 9999999988654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.58  E-value=7.2e-15  Score=105.57  Aligned_cols=158  Identities=15%  Similarity=0.059  Sum_probs=88.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcc---------------ccc--chHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELEC---------------HVI--NEDLVC   68 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~--~~~~l~   68 (176)
                      |.++.+|+|.|++||||||+++.|++.++..+.-    .+++....+.++....               .++  +...+.
T Consensus         2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~   77 (216)
T 3tmk_A            2 MGRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV   77 (216)
T ss_dssp             CCCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999763211    1111101111111110               111  111122


Q ss_pred             HHHHHHhhcCCeEE-cCC--------CCCCCC-------------CCcccEEEEE-eCChHHHHHHHhhcCCCCccccch
Q 030477           69 DELEDIMEQGGNIV-DYH--------GCDFFP-------------ERWFDRVVVL-QTENSVLYDRLTKRGYTGAKLTNN  125 (176)
Q Consensus        69 ~~i~~~~~~~~~vi-d~~--------~~~~~~-------------~~~~~~vi~l-~~~~~~~~~R~~~r~~~~~~~~~~  125 (176)
                      +.|...+..+.+|| |..        ....++             ...||++||| ++|++++.+|+..++   .+.+..
T Consensus        78 ~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~---dr~E~~  154 (216)
T 3tmk_A           78 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD---ERYETV  154 (216)
T ss_dssp             HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC---CTTCCH
T ss_pred             HHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc---ccccHH
Confidence            33444444455444 521        000110             0248999999 999999999975432   333332


Q ss_pred             hHHHHHHHHHHHHHhc---CCCCcEEEec-C-CCHHHHHHHHHHHHHHHH
Q 030477          126 IECEIFQVLLEEAKES---YPEDIVLALK-S-DTIEDITRNIAILTDWVR  170 (176)
Q Consensus       126 ~~~~~~~~~~~~~~~~---~~~~~~i~~~-~-~s~~ev~~~i~~~~~~~~  170 (176)
                      ...+.....+......   +.+..++.+| + .++++|.+.|..+++.+.
T Consensus       155 ~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l  204 (216)
T 3tmk_A          155 KFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVL  204 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            2233444444444433   3444566666 4 499999999999886543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.56  E-value=1.8e-14  Score=102.74  Aligned_cols=156  Identities=13%  Similarity=0.111  Sum_probs=79.6

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhh-----------------------hcc
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDE-----------------------LEC   59 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~-----------------------~~~   59 (176)
                      .-|.++++|+|+|||||||||+++.|++.++. ..++.+...+.+......+..                       ...
T Consensus         7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (204)
T 2qor_A            7 HHMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYAN   86 (204)
T ss_dssp             --CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             cccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCC
Confidence            45778899999999999999999999998843 333333333322211100000                       000


Q ss_pred             cccchHHHHHHHHHHh-hcCCeEEcCCC--CCCCCCCcc---cEEEEEe-CChHHHHHHHhhcCCCCccccchhHHHHHH
Q 030477           60 HVINEDLVCDELEDIM-EQGGNIVDYHG--CDFFPERWF---DRVVVLQ-TENSVLYDRLTKRGYTGAKLTNNIECEIFQ  132 (176)
Q Consensus        60 ~~~~~~~l~~~i~~~~-~~~~~vid~~~--~~~~~~~~~---~~vi~l~-~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~  132 (176)
                      ..+  ......+...+ .+..+|+|...  ...+....+   ..+|||+ +|++++.+|+..|+...+   +.. ..++.
T Consensus        87 ~~~--~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~---~~i-~~rl~  160 (204)
T 2qor_A           87 NFY--GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKP---EEI-NKRMQ  160 (204)
T ss_dssp             EEE--EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCH---HHH-HHHHH
T ss_pred             Cee--cCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCH---HHH-HHHHH
Confidence            001  00112333333 34567776321  111111112   2689998 999999999998874211   111 11222


Q ss_pred             HHHHHHH---hcCCCCcEEEecCCCHHHHHHHHHHHHHH
Q 030477          133 VLLEEAK---ESYPEDIVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       133 ~~~~~~~---~~~~~~~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      ....+..   ..+. +.++ +|. +++++.+.+..++..
T Consensus       161 ~~~~~~~~~~~~~~-d~vi-~n~-~~e~~~~~i~~~i~~  196 (204)
T 2qor_A          161 ELTREMDEADKVGF-NYFI-VND-DLARTYAELREYLLG  196 (204)
T ss_dssp             HHHHHHHHHHHHTC-SEEE-ECS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccC-cEEE-ECc-CHHHHHHHHHHHHHH
Confidence            2222221   1111 3333 343 788887777777654

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.55  E-value=1.7e-13  Score=97.26  Aligned_cols=153  Identities=18%  Similarity=0.177  Sum_probs=82.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc---CCeEeehh--------HHHhhcccCCCchhhhccccc--chHHHHHHHHHHhh
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST---QLRHINIG--------ELVREKNLHDGWDDELECHVI--NEDLVCDELEDIME   76 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~i~~~~~   76 (176)
                      .+|+|.|+.||||||+++.|++.|   |..++...        +.++...............++  +.....+.+...+.
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~   80 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS   80 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999987   66665321        112211111111111111111  11223344544555


Q ss_pred             cCCeEE-cCC---------CCCCCCC-------------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHH
Q 030477           77 QGGNIV-DYH---------GCDFFPE-------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQV  133 (176)
Q Consensus        77 ~~~~vi-d~~---------~~~~~~~-------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~  133 (176)
                      .+.+|| |..         .......             ..||+++||++|++++.+|...++    +.++....+....
T Consensus        81 ~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d----r~e~~ef~~rv~~  156 (197)
T 3hjn_A           81 EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN----RFEKREFLERVRE  156 (197)
T ss_dssp             TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----TTCCHHHHHHHHH
T ss_pred             CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC----ccccHHHHHHHHH
Confidence            555555 421         0001110             148999999999999999965443    2332222333333


Q ss_pred             HHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHH
Q 030477          134 LLEEAKESYPEDIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       134 ~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                      .+......+.. .++.+|+. ++++|.+.|.+.++
T Consensus       157 ~y~~la~~~~~-~~~~IDa~~~~eeV~~~I~~~i~  190 (197)
T 3hjn_A          157 GYLVLAREHPE-RIVVLDGKRSIEEIHRDVVREVK  190 (197)
T ss_dssp             HHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHS
T ss_pred             HHHHHHHhCCC-CEEEEcCCCCHHHHHHHHHHHHH
Confidence            44444444443 45556665 89999998887764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.54  E-value=5e-13  Score=97.81  Aligned_cols=112  Identities=19%  Similarity=0.256  Sum_probs=68.5

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhc-----ccccchHHHHHHHHHHh--
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELE-----CHVINEDLVCDELEDIM--   75 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~l~~~i~~~~--   75 (176)
                      .++.++.+|+|.|++||||||+++.|++++|+..++.+++.+..... ...+....     ...+....+.+.+...+  
T Consensus        22 ~~~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~  101 (246)
T 2bbw_A           22 SMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN  101 (246)
T ss_dssp             ----CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            33456789999999999999999999999999999998887653211 11111110     11122223333343322  


Q ss_pred             -hcCCeEEcCCCCC-----CCC-CCcccEEEEEeCChHHHHHHHhhc
Q 030477           76 -EQGGNIVDYHGCD-----FFP-ERWFDRVVVLQTENSVLYDRLTKR  115 (176)
Q Consensus        76 -~~~~~vid~~~~~-----~~~-~~~~~~vi~l~~~~~~~~~R~~~r  115 (176)
                       .+.+++++.....     .+. ...++.++||++|++++.+|+..|
T Consensus       102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r  148 (246)
T 2bbw_A          102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR  148 (246)
T ss_dssp             CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred             cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC
Confidence             2356777632111     000 023678999999999999999766

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.51  E-value=8.4e-14  Score=97.71  Aligned_cols=149  Identities=19%  Similarity=0.161  Sum_probs=78.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCCCchhhhcccccchHHHHH----HHHHHhh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHDGWDDELECHVINEDLVCD----ELEDIME   76 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~i~~~~~   76 (176)
                      .+++.+|+|+|++||||||+++.|++.++     +.+++.|.+.........+...      .......    ..+....
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~~~~   83 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTRE------ERLRHLKRIAWIARLLAR   83 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHH------HHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChh------hHHHHHHHHHHHHHHHHh
Confidence            34678999999999999999999999874     3567766653221110011100      0011111    1111223


Q ss_pred             cCCe-EEcCCCCC---------CCCC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC--
Q 030477           77 QGGN-IVDYHGCD---------FFPE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP--  143 (176)
Q Consensus        77 ~~~~-vid~~~~~---------~~~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  143 (176)
                      .+.+ ++|.....         .+.. ..++.+|||++|++++.+|+..+.+.... .+.     +..+.. ....|.  
T Consensus        84 ~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~-~~~-----~~~~~~-~~~~y~~~  156 (186)
T 2yvu_A           84 NGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKAL-KGE-----LENFTG-ITDPYEPP  156 (186)
T ss_dssp             TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHH-TTC-----CSSCHH-HHSCCCCC
T ss_pred             CCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHh-hcc-----hhhhhh-hhhcccCC
Confidence            3444 44642210         0100 02468999999999999997432100000 000     000111 123354  


Q ss_pred             --CCcEEEecCCCHHHHHHHHHHHHH
Q 030477          144 --EDIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       144 --~~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                        .+.+|+++..+++++.+.|...++
T Consensus       157 ~~~~~~Id~~~~~~~ev~~~I~~~l~  182 (186)
T 2yvu_A          157 ENPQLVLDTESNTIEHNVSYLYSLVK  182 (186)
T ss_dssp             SSCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHH
Confidence              245555555689988888877764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.51  E-value=8.6e-14  Score=100.32  Aligned_cols=159  Identities=17%  Similarity=0.074  Sum_probs=75.0

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCC----eEee-h--------hHHHhhcccC-CCchhhhcccccc---hHH
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQL----RHIN-I--------GELVREKNLH-DGWDDELECHVIN---EDL   66 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~----~~~~-~--------~~~~~~~~~~-~~~~~~~~~~~~~---~~~   66 (176)
                      +...++.+|+|.|++||||||+++.|++.++.    .++. .        ++.++..... ..+.......++.   .+.
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~   95 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREH   95 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            33457889999999999999999999998754    2222 1        1112111110 0121111111111   122


Q ss_pred             HHHHHHHHhhcCCe-EEcCCC---------CCCCCC------------CcccEEEEEeCChHHHHHHHhhcCCCCccccc
Q 030477           67 VCDELEDIMEQGGN-IVDYHG---------CDFFPE------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN  124 (176)
Q Consensus        67 l~~~i~~~~~~~~~-vid~~~---------~~~~~~------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~  124 (176)
                      +.+.+...+..+.+ |.|...         ...++.            ..||++|||++|++++.+|+ +|++    .+.
T Consensus        96 ~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rdr----~E~  170 (223)
T 3ld9_A           96 FVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKNG----YEF  170 (223)
T ss_dssp             HHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------------------
T ss_pred             HHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccCc----ccc
Confidence            22324444444544 445210         000000            24899999999999999998 4432    221


Q ss_pred             --hhHHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          125 --NIECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       125 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                        ....+.....+......+.. .++.+|+. +++++ +.|..+++.+
T Consensus       171 ~~~e~~~rv~~~y~~la~~~~~-~~~vIDa~~sieeV-~~I~~~l~~~  216 (223)
T 3ld9_A          171 ADMEFYYRVRDGFYDIAKKNPH-RCHVITDKSETYDI-DDINFVHLEV  216 (223)
T ss_dssp             -CHHHHHHHHHHHHHHHHHCTT-TEEEEESSCSSSCC-CHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHCCC-CEEEEcCCCCHHHH-HHHHHHHHHH
Confidence              22234455555555555543 45555554 88888 8888877654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.48  E-value=6.2e-13  Score=94.38  Aligned_cols=146  Identities=20%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcC-Ce
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQG-GN   80 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~~   80 (176)
                      .++.+|+|+|++||||||+++.|+..+   |..  +++.+++.........+........+  ..+..........+ .+
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v  100 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENI--RRVGEVAKLFADAGIIC  100 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHH--HHHHHHHHHHHHTTCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHH--HHHHHHHHHHHhCCceE
Confidence            567899999999999999999999988   665  88877664322111111110000000  01111111122223 33


Q ss_pred             EEcCCCC---------CCCCCCcccEEEEEeCChHHHHHHH------hhcCCCCccccchhHHHHHHHHHHHHHhcCC--
Q 030477           81 IVDYHGC---------DFFPERWFDRVVVLQTENSVLYDRL------TKRGYTGAKLTNNIECEIFQVLLEEAKESYP--  143 (176)
Q Consensus        81 vid~~~~---------~~~~~~~~~~vi~l~~~~~~~~~R~------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  143 (176)
                      +++....         ..+.. ....+|||++|++++.+|+      ..|........ ..            ...|.  
T Consensus       101 i~~~~~~~~~~r~~~~~~~~~-~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~-~~------------~~~~~~~  166 (200)
T 3uie_A          101 IASLISPYRTDRDACRSLLPE-GDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFT-GI------------DDPYEPP  166 (200)
T ss_dssp             EEECCCCCHHHHHHHHHTSCT-TSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCB-TT------------TBCCCCC
T ss_pred             EEecCCchHHHHHHHHHhcCC-CCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCC-CC------------CCcCcCC
Confidence            4332111         11111 1225699999999999996      33322111111 11            12233  


Q ss_pred             --CCcEEEecC-CCHHHHHHHHHHHHHH
Q 030477          144 --EDIVLALKS-DTIEDITRNIAILTDW  168 (176)
Q Consensus       144 --~~~~i~~~~-~s~~ev~~~i~~~~~~  168 (176)
                        ++.++++++ .+++++.+.|...+..
T Consensus       167 ~~~~~~idt~~~~~~~e~v~~i~~~l~~  194 (200)
T 3uie_A          167 LNCEISLGREGGTSPIEMAEKVVGYLDN  194 (200)
T ss_dssp             SSCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence              257788877 5999888888777654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.46  E-value=1.5e-12  Score=90.70  Aligned_cols=35  Identities=31%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG   41 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~   41 (176)
                      .++.+|+|+|++||||||+++.|++.+   |++++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d   40 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   40 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence            356789999999999999999999987   88877443

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.45  E-value=1.2e-12  Score=93.59  Aligned_cols=153  Identities=13%  Similarity=0.077  Sum_probs=79.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC------CeEeehhHHHhhcccCCCch-hhhcccccchHHHHHHHHHHhhc-
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ------LRHINIGELVREKNLHDGWD-DELECHVINEDLVCDELEDIMEQ-   77 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~-   77 (176)
                      ..++.+|+|+|++||||||+++.|++.++      +.+++.+.+.........+. ...... +  ..+...+...+.. 
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~-~--~~~~~~~~~~l~~g   98 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNEN-I--RRIAEVAKLFADSN   98 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHH-H--HHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHH-H--HHHHHHHHHHHHCC
Confidence            35678999999999999999999999876      77777555432211100111 000000 0  1122222233333 


Q ss_pred             CCeEEcCCCCC-----CC-----------CCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc
Q 030477           78 GGNIVDYHGCD-----FF-----------PERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES  141 (176)
Q Consensus        78 ~~~vid~~~~~-----~~-----------~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (176)
                      ..+|+|+....     .+           ....++.+|||++|++++.+|+ .|.    ... ... +.+..........
T Consensus        99 ~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~-~r~----~~~-~~r-~~~~~~~~~~~~~  171 (211)
T 1m7g_A           99 SIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD-PKG----LYK-KAR-EGVIKEFTGISAP  171 (211)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC-TTC----HHH-HHH-HTSSSSCBTTTBC
T ss_pred             CEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh-hHH----HHH-HHH-hcchhhhhhhhhh
Confidence            34666743210     00           0012478999999999999994 111    000 000 0000000011123


Q ss_pred             CC----CCcEEEecCCCHHHHHHHHHHHHHH
Q 030477          142 YP----EDIVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       142 ~~----~~~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      |.    .+.+|+++..+++++.+.|...++.
T Consensus       172 y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          172 YEAPANPEVHVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             CCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            33    1455655555899998888877753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.45  E-value=1.8e-13  Score=107.47  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcCCeEEcC
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQGGNIVDY   84 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~vid~   84 (176)
                      ..++.+|+|+|+|||||||+++.|++.+|+.+++.|++-       .+           ..+...+...+ .+..+|+|.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------~~-----------~~~~~~~~~~l~~g~~vIiD~  316 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG-------SW-----------QRCVSSCQAALRQGKRVVIDN  316 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC-------SH-----------HHHHHHHHHHHHTTCCEEEES
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH-------HH-----------HHHHHHHHHHHhcCCcEEEeC
Confidence            346789999999999999999999999999999988751       11           22333444433 456788886


Q ss_pred             CCCCCCCC----------CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           85 HGCDFFPE----------RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        85 ~~~~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      .......+          .....+|||++|.+++.+|+..|..
T Consensus       317 ~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~  359 (416)
T 3zvl_A          317 TNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM  359 (416)
T ss_dssp             CCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence            53221100          1123689999999999999998864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.44  E-value=2.4e-12  Score=90.29  Aligned_cols=148  Identities=15%  Similarity=0.146  Sum_probs=78.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccchHH----------------------
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINEDL----------------------   66 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------   66 (176)
                      +.|+|+||+||||||+++.|.+++.. ..++.+...|.+...+.-+.++  ++.+.+.                      
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY--~Fvs~~eF~~~i~~g~flE~~~~~g~~YG   79 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDY--NFVSVDEFKSMIKNNEFIEWAQFSGNYYG   79 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTB--EECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCcee--EeecHHHHHHHHHcCCEEEEEEEcCceee
Confidence            56899999999999999999887743 4456666666665544433333  2222222                      


Q ss_pred             -HHHHHHHHh-hcCCeEEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477           67 -VCDELEDIM-EQGGNIVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA  138 (176)
Q Consensus        67 -l~~~i~~~~-~~~~~vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  138 (176)
                       ..+.+...+ .+..+++|...      ...++. .+..++.+.+|.+++.+|+..|+...+   +.+ ..++.....+.
T Consensus        80 t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~-~~~~Ifi~pps~e~L~~RL~~Rg~e~~---e~i-~~Rl~~a~~e~  154 (186)
T 1ex7_A           80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPEL-NARFLFIAPPSVEDLKKRLEGRGTETE---ESI-NKRLSAAQAEL  154 (186)
T ss_dssp             EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGG-CCEEEEEECSCHHHHHHHHHHHCCSCH---HHH-HHHHHHHHHHH
T ss_pred             eecceeeehhhCCCEEEecCCHHHHHHHHHhccc-CceEEEEeCCCHHHHHHHHHhcCCCCH---HHH-HHHHHHHHHHH
Confidence             233333333 33455665321      111211 122344445678999999999985321   112 12343333332


Q ss_pred             HhcC-CC-CcEEEecCCCHHHHHHHHHHHH
Q 030477          139 KESY-PE-DIVLALKSDTIEDITRNIAILT  166 (176)
Q Consensus       139 ~~~~-~~-~~~i~~~~~s~~ev~~~i~~~~  166 (176)
                      .... .. +.+| +| ++.++..+.+..++
T Consensus       155 ~~~~~~~fD~vI-vN-ddle~a~~~l~~iI  182 (186)
T 1ex7_A          155 AYAETGAHDKVI-VN-DDLDKAYKELKDFI  182 (186)
T ss_dssp             HHHTTTCSSEEE-EC-SSHHHHHHHHHHHH
T ss_pred             hhccccCCcEEE-EC-cCHHHHHHHHHHHH
Confidence            2222 12 3333 44 35666666666554

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.44  E-value=1.9e-13  Score=101.06  Aligned_cols=75  Identities=16%  Similarity=0.096  Sum_probs=45.6

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh------cC---CCCcEEEecCC-CHHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE------SY---PEDIVLALKSD-TIEDITRNIA  163 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~i~~~~~-s~~ev~~~i~  163 (176)
                      .++.+|||++|++++.+|+.+|++...........+.+...++...+      .|   ....++.+|+. +++++.+.|.
T Consensus       174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I~  253 (263)
T 1p5z_B          174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLV  253 (263)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHH
T ss_pred             CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHHH
Confidence            36899999999999999999887532221112222334444443321      22   12335555554 8998888887


Q ss_pred             HHHHH
Q 030477          164 ILTDW  168 (176)
Q Consensus       164 ~~~~~  168 (176)
                      ..++.
T Consensus       254 ~~l~~  258 (263)
T 1p5z_B          254 EKVKE  258 (263)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77754

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.44  E-value=5.6e-13  Score=108.72  Aligned_cols=151  Identities=19%  Similarity=0.181  Sum_probs=80.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh-HHHhhcccC-CCchh-hhcccccchHHHHHHHHHHhhcCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG-ELVREKNLH-DGWDD-ELECHVINEDLVCDELEDIMEQGGN   80 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~-~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~   80 (176)
                      .++.+|+|+|+|||||||+++.|++.+   |++++++| +.++..... ..+.. .....+   ..+...++.....+.+
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~---r~i~eva~~~l~~G~i  126 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV---RRIAEVAKLFADAGLV  126 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH---HHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH---HHHHHHHHHHHhCCCE
Confidence            367899999999999999999999998   88887764 444432111 11111 110000   1122222222233333


Q ss_pred             EE-cCCCCC---------CCCC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC----CC
Q 030477           81 IV-DYHGCD---------FFPE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP----ED  145 (176)
Q Consensus        81 vi-d~~~~~---------~~~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  145 (176)
                      |+ +.....         .+.. ..+..+|||++|++++.+|+.++.+...+.. .     .. .+......|.    ++
T Consensus       127 VI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~-~-----~~-~~~~~~~~Ye~p~~~d  199 (630)
T 1x6v_B          127 CITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAG-E-----IK-GFTGIDSEYEKPEAPE  199 (630)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC-----------CBTTTBCCCCCSSCS
T ss_pred             EEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhh-h-----HH-HHHHhhhhhcccCCCc
Confidence            33 421100         0000 1235799999999999999763221100000 0     00 0111234454    24


Q ss_pred             cEEEecCCCHHHHHHHHHHHHH
Q 030477          146 IVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       146 ~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      .+|+++..+++++.+.|...+.
T Consensus       200 lvIDts~~s~eevv~~Il~~L~  221 (630)
T 1x6v_B          200 LVLKTDSCDVNDCVQQVVELLQ  221 (630)
T ss_dssp             EEEETTSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHH
Confidence            5666665689888887777664

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.43  E-value=5.7e-13  Score=96.64  Aligned_cols=76  Identities=21%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcC--CC-CcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESY--PE-DIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                      .+|++|||++|++++.+|+.+|++..+........+++...+......|  .. ..++.+|+. +++++.+.|..+++.+
T Consensus       146 ~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~  225 (230)
T 2vp4_A          146 QADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSI  225 (230)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC----------------
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            3789999999999999999988753222111122345566666655444  22 445556655 8999999888877643

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.42  E-value=2e-11  Score=91.31  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=64.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc--CCeEeehhHHHhhcccCC----Cchhhhccc--ccchHHHHHHHHHHh-hc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST--QLRHINIGELVREKNLHD----GWDDELECH--VINEDLVCDELEDIM-EQ   77 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l--~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~l~~~i~~~~-~~   77 (176)
                      .++.+|+|+|||||||||+++.|++++  ++.+++.|.+......+.    .++.....+  .+........++..+ .+
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g  110 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQG  110 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcC
Confidence            457799999999999999999999988  788899766543221110    011100000  000111223333334 45


Q ss_pred             CCeEEcCCCCCCC---------CCC-cccEEEEEeCChHHH----HHHHhhc
Q 030477           78 GGNIVDYHGCDFF---------PER-WFDRVVVLQTENSVL----YDRLTKR  115 (176)
Q Consensus        78 ~~~vid~~~~~~~---------~~~-~~~~vi~l~~~~~~~----~~R~~~r  115 (176)
                      .++|+|.......         ... ....++++.+|++++    .+|+..|
T Consensus       111 ~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          111 YNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             CCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            6789986543221         111 122478899999999    8888655

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.39  E-value=4.6e-13  Score=100.63  Aligned_cols=106  Identities=25%  Similarity=0.315  Sum_probs=65.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc-CCeEeehhHHHhhcccCCCchhhhcccccc-h----HHHHHHHHHHh----hcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST-QLRHINIGELVREKNLHDGWDDELECHVIN-E----DLVCDELEDIM----EQGG   79 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~l~~~i~~~~----~~~~   79 (176)
                      .+|+|+|+|||||||+++.|++++ |+.+++.|.+......... +.. ..+... +    ..+.+.+...+    .+.+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~   80 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSVKG   80 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCCCE
Confidence            589999999999999999999985 9999999865433221000 000 011111 1    22333444444    3356


Q ss_pred             eEEcCCCCCC-----CC----C-CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           80 NIVDYHGCDF-----FP----E-RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        80 ~vid~~~~~~-----~~----~-~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      +|+|......     +.    . .....+|||++|++++.+|+.+|+.
T Consensus        81 vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  128 (301)
T 1ltq_A           81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (301)
T ss_dssp             EEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence            8888644221     11    0 1123799999999999999998863

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.36  E-value=3.7e-12  Score=92.90  Aligned_cols=80  Identities=18%  Similarity=0.047  Sum_probs=51.0

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhc---------CCCCcEEEecCC-CHHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKES---------YPEDIVLALKSD-TIEDITRNIA  163 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~~~~-s~~ev~~~i~  163 (176)
                      .++.+|||++|++++.+|+.+|++..+........+.+...+......         |....++.+++. +++++.+.+.
T Consensus       149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i~  228 (241)
T 2ocp_A          149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQE  228 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHHH
Confidence            378999999999999999998876433211112223344444433221         233455666654 7888888888


Q ss_pred             HHHHHHHhhc
Q 030477          164 ILTDWVRNWQ  173 (176)
Q Consensus       164 ~~~~~~~~~~  173 (176)
                      .+++.+..+.
T Consensus       229 ~i~~~i~~~l  238 (241)
T 2ocp_A          229 DLMREVNTFV  238 (241)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888876653

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.36  E-value=5.4e-13  Score=107.82  Aligned_cols=150  Identities=17%  Similarity=0.109  Sum_probs=81.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcCCeE
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQGGNI   81 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~v   81 (176)
                      ++.+|+|+|++||||||+++.|++.++     +.+++.|.+.+.......+...-....+  ..+...+.... .++++|
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l--~~i~~~~~~~l~~G~~VI  448 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNI--LRVGFVASEIVKHNGVVI  448 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHH--HHHHHHHHHHHHTTCEEE
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHH--HHHHHHHHHHHhCCCEEE
Confidence            457899999999999999999999886     3778866654332111111110000000  11222333333 345677


Q ss_pred             EcCCC---------CCCCCCCccc-EEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC----CCcE
Q 030477           82 VDYHG---------CDFFPERWFD-RVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP----EDIV  147 (176)
Q Consensus        82 id~~~---------~~~~~~~~~~-~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  147 (176)
                      +|...         ...+..  .+ .+|||++|++++.+|+.++.+.    . .. ...+..+...+ ..|.    .+.+
T Consensus       449 ~d~~~~~~~~r~~~~~~l~~--~d~~vV~L~~~~e~~~~Rl~r~~~~----~-~~-~~~i~~~~~vr-~~~e~~~~adiv  519 (546)
T 2gks_A          449 CALVSPYRSARNQVRNMMEE--GKFIEVFVDAPVEVCEERDVKGLYK----K-AK-EGLIKGFTGVD-DPYEPPVAPEVR  519 (546)
T ss_dssp             EECCCCCHHHHHHHHTTSCT--TCEEEEEEECCGGGHHHHCCSSHHH----H-C-------CCBTTT-BCCCCCSSCSEE
T ss_pred             EEcCCCCHHHHHHHHHHhhc--CCEEEEEEeCCHHHHHHHhhccccc----c-cc-HHHHHHHHhhh-hccccccCCcEE
Confidence            78422         122322  35 7999999999999997521110    0 00 00111111111 1222    2455


Q ss_pred             EEecCCCHHHHHHHHHHHHHH
Q 030477          148 LALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       148 i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      |++++.+++++.+.|...++.
T Consensus       520 IDts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          520 VDTTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             EETTTSCHHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHH
Confidence            665556899998888887754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.35  E-value=2.4e-11  Score=86.09  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=27.5

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .|.++.+|+|+||+||||||+++.|+..+....++
T Consensus         3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~   37 (205)
T 3tr0_A            3 AMNKANLFIISAPSGAGKTSLVRALVKALAEIKIS   37 (205)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEEC
T ss_pred             cCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEe
Confidence            35678899999999999999999999876533343

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.35  E-value=9.9e-12  Score=87.22  Aligned_cols=153  Identities=18%  Similarity=0.188  Sum_probs=83.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCe--EeehhHHHhhcccCC--Cc-hhhhcccccchHHHHHHHHH----Hhh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLR--HINIGELVREKNLHD--GW-DDELECHVINEDLVCDELED----IME   76 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~i~~----~~~   76 (176)
                      +.++.+|+|+||+||||||+++.|+..++..  +++.+++........  .+ .+...    ....+.+.+..    ...
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~~~~   81 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGRYAK   81 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHHHhc
Confidence            4567899999999999999999999876544  677777654322111  11 00000    01112222211    122


Q ss_pred             c-CCeEEcCCCCC-C---CCC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEE
Q 030477           77 Q-GGNIVDYHGCD-F---FPE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLA  149 (176)
Q Consensus        77 ~-~~~vid~~~~~-~---~~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~  149 (176)
                      . ..+++|..... .   +.. .....++++.++.+++.+|+..|+.  +...+ .  +....+.+...+.+.. ..+++
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~--~~lld-~--~~~~~~~~~~~~l~~~~~~~i~  156 (191)
T 1zp6_A           82 EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGG--DSLSD-P--LVVADLHSQFADLGAFEHHVLP  156 (191)
T ss_dssp             TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCT--TSCCC-H--HHHHHHHHHTTCCGGGGGGEEE
T ss_pred             cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCC--CccCC-H--HHHHHHHHHHhccCcccccEEE
Confidence            2 33566642111 1   110 1122578999999999999998753  22221 1  2333344433333322 35666


Q ss_pred             ecCCCHHHHHHHHHHHHH
Q 030477          150 LKSDTIEDITRNIAILTD  167 (176)
Q Consensus       150 ~~~~s~~ev~~~i~~~~~  167 (176)
                      +++.+++++.+.+..++.
T Consensus       157 t~~~~~~~~~~~i~~~l~  174 (191)
T 1zp6_A          157 VSGKDTDQALQSAINALQ  174 (191)
T ss_dssp             CTTCCTTTTTTTTHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            665678877777766654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.34  E-value=2.4e-12  Score=91.94  Aligned_cols=155  Identities=13%  Similarity=0.117  Sum_probs=72.0

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccch-------------------
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINE-------------------   64 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------   64 (176)
                      ++.++.+|+|+||+||||||+++.|++.++. .....+...+.+......+..+  .+.+.                   
T Consensus         4 m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y--~~~~~~~f~~~~~~~~~le~~~~~   81 (208)
T 3tau_A            4 MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDY--YFRSREVFEQAIKDGKMLEYAEYV   81 (208)
T ss_dssp             -CCCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTB--EECCHHHHHHHHHTTCEEEEEEET
T ss_pred             ccCCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCcee--EEecHHHHHHHHhcCcEEEEEEEc
Confidence            3467889999999999999999999998743 2333222222221111101000  00000                   


Q ss_pred             ----HHHHHHHHHHh-hcCCeEEcCCC--CCCCCCCcc-cEEEEEeC-ChHHHHHHHhhcCCCCccccchhHHHHHHHHH
Q 030477           65 ----DLVCDELEDIM-EQGGNIVDYHG--CDFFPERWF-DRVVVLQT-ENSVLYDRLTKRGYTGAKLTNNIECEIFQVLL  135 (176)
Q Consensus        65 ----~~l~~~i~~~~-~~~~~vid~~~--~~~~~~~~~-~~vi~l~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~  135 (176)
                          ......++..+ .+..+++|...  ...+....+ ..+||+.+ +++++.+|+.+|+...+   +.. ..++....
T Consensus        82 ~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~---e~i-~~Rl~~~~  157 (208)
T 3tau_A           82 GNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESM---EVV-EERMETAK  157 (208)
T ss_dssp             TEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CC---HHH-HHHHHHHH
T ss_pred             cccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCH---HHH-HHHHHHHH
Confidence                01122334444 34566765311  001111112 24566665 48999999998874211   111 12333333


Q ss_pred             HHHHhcCCC-CcEEEecCCCHHHHHHHHHHHHHH
Q 030477          136 EEAKESYPE-DIVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       136 ~~~~~~~~~-~~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      .+.. .+.. +.++ +|+ +.+++.+.+..++..
T Consensus       158 ~e~~-~~~~~d~vi-vN~-~~~~~~~~l~~~i~~  188 (208)
T 3tau_A          158 KEIE-MMASYDYAV-VND-VVANAVQKIKGIVET  188 (208)
T ss_dssp             HHHH-HGGGSSEEE-ECS-SHHHHHHHHHHHHHH
T ss_pred             HHHH-hhccCCEEE-ECc-CHHHHHHHHHHHHHH
Confidence            2221 1222 3333 443 688888888877754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.34  E-value=1.1e-12  Score=96.44  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=32.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELV   44 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~   44 (176)
                      ++|+|+||+||||||+|+.|++++++.+++.|++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~   36 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ   36 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence            58999999999999999999999999999998865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.32  E-value=5.3e-12  Score=92.78  Aligned_cols=110  Identities=13%  Similarity=0.092  Sum_probs=63.0

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeehhHHHhhcc----cCCCchhhhcccccc-hHHH-HHHHHHHhhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINIGELVREKN----LHDGWDDELECHVIN-EDLV-CDELEDIMEQ   77 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~l-~~~i~~~~~~   77 (176)
                      ..++.+|+|+|+|||||||+++.|++.++  +.+++.|.+.....    +....+.....+.-. ...+ ...+..++..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  108 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSL  108 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHhc
Confidence            44677999999999999999999999986  56677665532211    111111111101000 1112 2223333433


Q ss_pred             -CCeEEcCCCCCCC---------CCCc-ccEEEEEeCChHHHHHHHhhc
Q 030477           78 -GGNIVDYHGCDFF---------PERW-FDRVVVLQTENSVLYDRLTKR  115 (176)
Q Consensus        78 -~~~vid~~~~~~~---------~~~~-~~~vi~l~~~~~~~~~R~~~r  115 (176)
                       .++|+|.......         .... .-.++|+.+|++++.+|+..|
T Consensus       109 g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R  157 (253)
T 2p5t_B          109 GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR  157 (253)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence             4889986433211         1111 223578899999999999876

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.28  E-value=1.1e-11  Score=92.83  Aligned_cols=38  Identities=26%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVR   45 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~   45 (176)
                      ++.+|.|+|++||||||+++.|++.+|     +.+++.|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            567899999999999999999999887     78999999875

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.28  E-value=6.1e-12  Score=102.22  Aligned_cols=154  Identities=13%  Similarity=0.057  Sum_probs=76.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC----C--eEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCC-
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ----L--RHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGG-   79 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~-   79 (176)
                      .++.+|+|+|+|||||||+|+.|+++++    .  .+++.|.+.+.......+...-....+  ..+...++.+...+. 
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i--~ri~~v~~~~~~~g~~  471 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNI--QRIAFVATELTRAGAA  471 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHH--HHHHHHHHHHHHTTCE
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHH--HHHHHHHHHHHhCCCE
Confidence            3567899999999999999999999976    3  456655543321111111110000000  011122223333344 


Q ss_pred             eEEcCCCC---------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC---CCcE
Q 030477           80 NIVDYHGC---------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP---EDIV  147 (176)
Q Consensus        80 ~vid~~~~---------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  147 (176)
                      +|.+....         +.+.......+|||++|++++.+|..++     ...... ...+..+...+.+.+.   .+.+
T Consensus       472 VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~-----l~~~~~-~~~i~~~~~~r~~~~~p~~~dl~  545 (573)
T 1m8p_A          472 VIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG-----IYAAAR-RGEIKGFTGVDDPYETPEKADLV  545 (573)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC-----HHHHHH-TTSSSSCBTTTBCCCCCSSCSEE
T ss_pred             EEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhccc-----chhhhh-HHHHHHHHhccccccccCCCCEE
Confidence            44452221         0011111237899999999999995321     110000 0001111111222222   2455


Q ss_pred             EEecCCCHHHHHHHHHHHHHH
Q 030477          148 LALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       148 i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      |+++..+++++.+.|...+..
T Consensus       546 IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          546 VDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             ECTTTSCHHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHHh
Confidence            555555899888888777753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.27  E-value=1.4e-10  Score=81.34  Aligned_cols=105  Identities=19%  Similarity=0.066  Sum_probs=59.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccchHHHHHH----HHHHh-hcCCeEEc
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINEDLVCDE----LEDIM-EQGGNIVD   83 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----i~~~~-~~~~~vid   83 (176)
                      .+++|+||+||||||+++.|+..++. .+++.+++....... ...+..  .......+.+.    ..... .+..+++|
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ild   79 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGG-YRPPWE--SDELLALTWKNITDLTVNFLLAQNDVVLD   79 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTT-CCCGGG--CHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccc-cccCcc--chhHHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence            57899999999999999999988765 788877765432111 111100  00011111121    22222 22356777


Q ss_pred             CCCCCC-------C----CCCcccEEEEEeCChHHHHHHHhhcCC
Q 030477           84 YHGCDF-------F----PERWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        84 ~~~~~~-------~----~~~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      ......       +    -......+++|.+|++++.+|...|..
T Consensus        80 ~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~  124 (189)
T 2bdt_A           80 YIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK  124 (189)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred             eccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence            521100       0    000122468899999999999988764

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=99.23  E-value=1.2e-11  Score=87.30  Aligned_cols=154  Identities=14%  Similarity=0.138  Sum_probs=83.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC---CeEeehhHHHhhc-ccC--CCchhhhcccccch------HHHHHHHHH-
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGELVREK-NLH--DGWDDELECHVINE------DLVCDELED-   73 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~------~~l~~~i~~-   73 (176)
                      .++.+|+|+|.|||||+|+++.|.+.+|   ++++++++.++.. ...  ..+.......-+.+      ..+.+.++. 
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~   88 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA   88 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence            4667889999999999999999988784   7889999988742 110  01111000000100      111122211 


Q ss_pred             -------H-h---hcCCeEEcC----CCCCCCCCCcc--cEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHH
Q 030477           74 -------I-M---EQGGNIVDY----HGCDFFPERWF--DRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLE  136 (176)
Q Consensus        74 -------~-~---~~~~~vid~----~~~~~~~~~~~--~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~  136 (176)
                             . .   ....+||+.    +..+.|....+  -.+|.+.++++++.+|.    +......++.+.       +
T Consensus        89 d~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg----~~~~~~~Dd~es-------E  157 (202)
T 3ch4_B           89 DPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG----WVFTPGVDDAES-------E  157 (202)
T ss_dssp             CTTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT----CCCCTTTTTSHH-------H
T ss_pred             CchHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh----hhcccccccccc-------c
Confidence                   1 1   112356652    11223332222  24699999999999983    321221212211       1


Q ss_pred             HHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHHHh
Q 030477          137 EAKESYPEDIVLALKSDTIEDITRNIAILTDWVRN  171 (176)
Q Consensus       137 ~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~~  171 (176)
                      .-...+....++.+|+++.+++.+.+..++..+..
T Consensus       158 ~gL~~~~~~D~vI~Ndgt~eel~~~v~~ll~~~~~  192 (202)
T 3ch4_B          158 CGLDNFGDFDWVIENHGVEQRLEEQLENLIEFIRS  192 (202)
T ss_dssp             HTTTTCCCCSEEEEECSCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCcCCEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            11223322334456667999999999999987754

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.22  E-value=1.5e-11  Score=87.24  Aligned_cols=28  Identities=25%  Similarity=0.394  Sum_probs=24.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.+|+|+||+||||||+++.|+..+
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4577899999999999999999998876

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.19  E-value=3.7e-11  Score=97.10  Aligned_cols=154  Identities=14%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC------CeEeehhHHHhhcccCCCchh-hhcccccchHHHHHHHHHHhhcC
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ------LRHINIGELVREKNLHDGWDD-ELECHVINEDLVCDELEDIMEQG   78 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~   78 (176)
                      ..++.+|+|+|++||||||+++.|+..++      +.+++.+++.........+.. +....+   ..+....+.+...+
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~---r~i~~v~q~l~~~~  442 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNV---RRIGFVASEITKNR  442 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHH---HHHHHHHHHHHHTT
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHH---HHHHHHHHHHHhcC
Confidence            34678999999999999999999999873      446887776543211111111 110000   01111111222234


Q ss_pred             CeEEcCCCC----------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC---CC
Q 030477           79 GNIVDYHGC----------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP---ED  145 (176)
Q Consensus        79 ~~vid~~~~----------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  145 (176)
                      .+++.....          +.+.....-.+|||++|.+++.+|..+..+..      .....+..++..+.+.|.   .+
T Consensus       443 ~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~------~~~~~i~~l~~~r~~~e~P~~ad  516 (552)
T 3cr8_A          443 GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAK------ARAGLIPEFTGVSDPYEVPETPE  516 (552)
T ss_dssp             CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------------CCCCCCSSCS
T ss_pred             CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcccccccc------ccHhHHHHHHhccccccCCCCCC
Confidence            444421110          01111111268999999999999975222211      111124445555555553   25


Q ss_pred             cEEEecCCCHHHHHHHHHHHHHH
Q 030477          146 IVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       146 ~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      .+++++..+++++.+.|...+..
T Consensus       517 l~Idt~~~s~~e~v~~Il~~L~~  539 (552)
T 3cr8_A          517 LAIDTTGLAIDEAVQQILLKLEH  539 (552)
T ss_dssp             EEECCSSCCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHh
Confidence            66666666888887777766643

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.17  E-value=2.7e-10  Score=81.16  Aligned_cols=40  Identities=23%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeehhHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINIGELVR   45 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~~~~~~   45 (176)
                      ..++.+|.|+|++||||||+++.|+..++  +.+++.|.+..
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            34667899999999999999999999888  88888776543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.14  E-value=1.9e-10  Score=87.36  Aligned_cols=36  Identities=31%  Similarity=0.432  Sum_probs=33.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ++++|+|+||+||||||++..||++++..+++.|.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            446899999999999999999999999999998876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.14  E-value=7.1e-10  Score=78.98  Aligned_cols=37  Identities=27%  Similarity=0.489  Sum_probs=29.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGEL   43 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~   43 (176)
                      .++.+|.|.||+||||||+++.|+..+.     ..++..+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            4567999999999999999999998774     456666554

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.12  E-value=4.8e-10  Score=90.22  Aligned_cols=40  Identities=35%  Similarity=0.484  Sum_probs=32.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCC-----eEeehhHHHhhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQL-----RHINIGELVREK   47 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~-----~~~~~~~~~~~~   47 (176)
                      .+.+|+++|+|||||||+|+.|++.+++     .+|+.|++.+..
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~   78 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA   78 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence            4568999999999999999999998843     347878876554

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.09  E-value=7.8e-12  Score=89.25  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=23.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ++|+|+|++||||||+++.|++.++.
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999998853

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.05  E-value=1.1e-09  Score=79.95  Aligned_cols=30  Identities=23%  Similarity=0.179  Sum_probs=26.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      .++.+|.|+||+||||||+++.|+..+|..
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            466789999999999999999999988865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.04  E-value=3.4e-10  Score=80.25  Aligned_cols=110  Identities=15%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHHHhhcc----cCCCchhhhcccccchHHHHHHH-HHH-
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGELVREKN----LHDGWDDELECHVINEDLVCDEL-EDI-   74 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~i-~~~-   74 (176)
                      +.++.+|.|+|++||||||+++.|+..+   |..  +++.|.+.....    .....+..+....++...+.+.+ ... 
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~   98 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK   98 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence            3466799999999999999999999865   443  345455433211    11111111101112223333322 100 


Q ss_pred             -----------------------hhc-CCeEEcCCCCC--CCCCCcccEEEEEeCChHHHHHHHhhcC
Q 030477           75 -----------------------MEQ-GGNIVDYHGCD--FFPERWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        75 -----------------------~~~-~~~vid~~~~~--~~~~~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                                             ... ..+|+|.....  .+ ...++.+||+++|++++.+|+.+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~-~~~~d~~i~v~~~~~~~~~R~~~R~  165 (201)
T 1rz3_A           99 ASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEW-RPFFDFVVYLDCPREIRFARENDQV  165 (201)
T ss_dssp             TCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTTT-GGGCSEEEEECCC------------
T ss_pred             cCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHHH-HhhcCEEEEEeCCHHHHHHHHhcCC
Confidence                                   011 23556643311  11 1236789999999999999999887

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.01  E-value=8.8e-10  Score=79.68  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=18.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHH-Hhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALA-EST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La-~~l   33 (176)
                      .++.+|+|+||+||||||+++.|+ ..+
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            467899999999999999999998 654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.00  E-value=1.4e-09  Score=85.36  Aligned_cols=37  Identities=32%  Similarity=0.438  Sum_probs=32.9

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|+||||||||++|+++|.++|++++..
T Consensus       210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v  246 (434)
T 4b4t_M          210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL  246 (434)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            3566789999999999999999999999999988754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.00  E-value=1.2e-09  Score=76.15  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=24.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ++.+++|+||+||||||+++.|+..+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            567999999999999999999988653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.97  E-value=5.7e-09  Score=79.03  Aligned_cols=107  Identities=16%  Similarity=0.106  Sum_probs=63.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHHHhhc------ccCCCchhhhcccccchHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIGELVREK------NLHDGWDDELECHVINEDLVCDELED   73 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~i~~   73 (176)
                      .++.+|.|+||+||||||+++.|+..++       ..+++.|.+....      .....++.   ...++.+.+.+.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~---P~~~D~~~l~~~L~~  166 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGF---PESYDMPSLLRVLNA  166 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTS---GGGBCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccC---cccccHHHHHHHHHh
Confidence            3566899999999999999999988764       4456766643211      01111110   112344555555554


Q ss_pred             HhhcC-C--------------------------eEEcCCCCCCC------------CCCcccEEEEEeCChHHHHHHHhh
Q 030477           74 IMEQG-G--------------------------NIVDYHGCDFF------------PERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        74 ~~~~~-~--------------------------~vid~~~~~~~------------~~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                      +..+. .                          +|++....-..            -...+|.+||+++|.+++.+|+..
T Consensus       167 L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~  246 (321)
T 3tqc_A          167 IKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYID  246 (321)
T ss_dssp             HHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHH
T ss_pred             hhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHH
Confidence            43322 1                          12232111000            112468999999999999999988


Q ss_pred             cC
Q 030477          115 RG  116 (176)
Q Consensus       115 r~  116 (176)
                      |+
T Consensus       247 Rd  248 (321)
T 3tqc_A          247 RV  248 (321)
T ss_dssp             HH
T ss_pred             hc
Confidence            85

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.97  E-value=9.8e-10  Score=85.74  Aligned_cols=37  Identities=30%  Similarity=0.486  Sum_probs=32.8

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|+||||||||++|+++|.+++++++..
T Consensus       211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            4556789999999999999999999999999988754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.95  E-value=2.4e-09  Score=84.13  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=32.9

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|+||||||||++|+++|.++|++++..
T Consensus       210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            3567789999999999999999999999999988744

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.95  E-value=1.3e-09  Score=84.60  Aligned_cols=37  Identities=30%  Similarity=0.463  Sum_probs=33.1

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|+||||||||++|+++|.++|++++..
T Consensus       177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          177 LGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             HTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            4567789999999999999999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.95  E-value=2.3e-09  Score=75.71  Aligned_cols=31  Identities=19%  Similarity=0.364  Sum_probs=26.2

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ++..++.+|+|+||+||||||+++.|.+.+.
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3445788999999999999999999998765

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=98.89  E-value=4.3e-09  Score=79.99  Aligned_cols=29  Identities=28%  Similarity=0.351  Sum_probs=25.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      .++++|+|.|+.||||||+++.|++.++.
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45689999999999999999999998853

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.88  E-value=3.5e-08  Score=74.38  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIGEL   43 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~   43 (176)
                      .++.+|.|+|++||||||+++.|+..++       +.+++.|..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            5667999999999999999999998765       556676654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.87  E-value=6e-09  Score=81.73  Aligned_cols=37  Identities=35%  Similarity=0.472  Sum_probs=32.9

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|+||||||||++|+++|..+|++++..
T Consensus       201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            3567788999999999999999999999999988754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.85  E-value=2.8e-09  Score=83.88  Aligned_cols=37  Identities=35%  Similarity=0.475  Sum_probs=33.1

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|+||||||||++|+++|.+++++++..
T Consensus       238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v  274 (467)
T 4b4t_H          238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV  274 (467)
T ss_dssp             HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence            4567889999999999999999999999999998754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.82  E-value=1.6e-09  Score=82.44  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=32.9

Q ss_pred             CCccCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            1 MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         1 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      |+.|.|  +++|+|+||+||||||+++.|++.++..+++.|++
T Consensus         1 ~~~m~m--~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            1 MTEMTK--PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             -----C--CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             CCCCCC--CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            444443  25899999999999999999999999999999987

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.81  E-value=2.8e-08  Score=83.35  Aligned_cols=37  Identities=35%  Similarity=0.415  Sum_probs=32.8

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|+||||||||++++++|.++|.+++..
T Consensus       233 ~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v  269 (806)
T 3cf2_A          233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (806)
T ss_dssp             CCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred             cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence            4556789999999999999999999999999988754

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.78  E-value=1.9e-08  Score=80.50  Aligned_cols=36  Identities=11%  Similarity=0.098  Sum_probs=31.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC-------eEeehhH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL-------RHINIGE   42 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~-------~~~~~~~   42 (176)
                      .++..|+|+|++||||||++++|+++|+.       .+++.|+
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            35678999999999999999999999986       5777665

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.78  E-value=7.4e-08  Score=76.64  Aligned_cols=39  Identities=31%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVRE   46 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~   46 (176)
                      ++.+|+++|+|||||||+++.|++.++     ...++.+++...
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~   81 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD   81 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence            456899999999999999999999875     345566665444

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.78  E-value=3.9e-09  Score=79.80  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELV   44 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~   44 (176)
                      ++|+|+||+||||||+++.|+++++..+++.|.+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q   40 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL   40 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence            48999999999999999999999999999998763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.71  E-value=3.1e-07  Score=65.91  Aligned_cols=31  Identities=19%  Similarity=0.293  Sum_probs=25.0

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      .-|.++.+++|+||+||||||+.+.|+..+.
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4467889999999999999999999988764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.69  E-value=9.8e-09  Score=77.00  Aligned_cols=43  Identities=23%  Similarity=0.316  Sum_probs=32.6

Q ss_pred             CCccCC-CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            1 MAQDSK-RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         1 ~~~~~~-~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      |+++.. ..+++|+|+||+||||||++..|+++++..+++.|..
T Consensus         1 ~~~~~~~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A            1 MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             ------CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCccccCCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            455332 2356889999999999999999999999999988763

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=98.67  E-value=4.1e-08  Score=74.74  Aligned_cols=33  Identities=30%  Similarity=0.303  Sum_probs=27.4

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHH-HHHHHhcCC
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTS-TALAESTQL   35 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla-~~La~~l~~   35 (176)
                      ++.+.++.+|+|.|+.||||||++ +.|++.++.
T Consensus         6 ~~~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A            6 TDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             --CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             ccccCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            344567789999999999999999 999998754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.64  E-value=1.8e-08  Score=75.69  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=33.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ++++|+|+||+||||||++..|+++++..+++.|..
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            467899999999999999999999999999998875

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.63  E-value=1.4e-06  Score=61.47  Aligned_cols=28  Identities=21%  Similarity=0.377  Sum_probs=22.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      |.++..++|.||+||||||+.+.|...+
T Consensus         1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            1 MAGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4467899999999999999999998754

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=98.60  E-value=2.4e-08  Score=75.75  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=22.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      .+..+|+|.|+.||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4567999999999999999999998774

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.60  E-value=3.2e-08  Score=74.10  Aligned_cols=34  Identities=15%  Similarity=0.132  Sum_probs=29.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ...+..++|+||||+|||++|+.+|+.+|.+++.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~   66 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIM   66 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4556788999999999999999999999877653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.59  E-value=6.1e-08  Score=81.35  Aligned_cols=37  Identities=32%  Similarity=0.449  Sum_probs=32.8

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+...++.|+|+||||||||++|+++|.+++.+++..
T Consensus       506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v  542 (806)
T 3cf2_A          506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI  542 (806)
T ss_dssp             SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred             cCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence            4556778899999999999999999999999998754

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.58  E-value=3.9e-08  Score=75.68  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=23.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +.+..+|+|.|+.||||||+++.|++.++
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34667899999999999999999999874

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.54  E-value=3.2e-07  Score=69.24  Aligned_cols=28  Identities=29%  Similarity=0.256  Sum_probs=24.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.+|.|.|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            4567899999999999999999998865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.49  E-value=1.1e-07  Score=69.44  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=29.8

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      +...+..++|+||||+||||+++.+++.++.+++.
T Consensus        35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             -CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            34567789999999999999999999999877753

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.46  E-value=1.5e-07  Score=68.85  Aligned_cols=34  Identities=32%  Similarity=0.571  Sum_probs=28.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ..++.++|+|||||||||+++.|+..++.+++..
T Consensus        43 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            3466799999999999999999999998776543

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.45  E-value=1.3e-07  Score=68.76  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=32.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhh
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE   46 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~   46 (176)
                      ++|.|+|++||||||+++.|.+.+|++++..++.++.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~   38 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD   38 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHH
Confidence            5899999999999999999988899999988776544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.45  E-value=1.8e-07  Score=70.19  Aligned_cols=35  Identities=34%  Similarity=0.513  Sum_probs=30.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ...+..|+|+|||||||||++++|+..++.+++..
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v   80 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI   80 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence            45678899999999999999999999998877644

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.43  E-value=1.3e-06  Score=65.32  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=27.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCeEee
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHIN   39 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~   39 (176)
                      .+.+|+|.|..||||||+.+.|.+.+   |+.++.
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~  119 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVA  119 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEE
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEE
Confidence            56799999999999999999999988   454554

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.41  E-value=2.6e-07  Score=68.53  Aligned_cols=34  Identities=38%  Similarity=0.516  Sum_probs=30.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ...+..++|+||||+||||+++.++..++.+++.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            4567789999999999999999999999888764

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.37  E-value=1.8e-07  Score=72.56  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      +++|+|+||+||||||++..|++.++..+++.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            4689999999999999999999999999999876

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.37  E-value=3.4e-07  Score=68.26  Aligned_cols=32  Identities=31%  Similarity=0.516  Sum_probs=28.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .+..++|+|||||||||+++.++..++.+++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            46789999999999999999999999887754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.36  E-value=4.2e-07  Score=68.80  Aligned_cols=34  Identities=29%  Similarity=0.539  Sum_probs=29.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ..+..|+|+||||+|||+++++++..++.+++..
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            3467899999999999999999999998887643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.35  E-value=5.8e-07  Score=60.58  Aligned_cols=36  Identities=22%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~   43 (176)
                      +...++|.|++||||||+++.++..+   |  ..+++..++
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~   75 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM   75 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence            56789999999999999999999876   6  445555443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.34  E-value=5.2e-07  Score=66.90  Aligned_cols=34  Identities=32%  Similarity=0.543  Sum_probs=28.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ...++.++|.|||||||||+++.|+..++..++.
T Consensus        41 l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~   74 (274)
T 2x8a_A           41 LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFIS   74 (274)
T ss_dssp             CCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence            3445569999999999999999999988766553

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=98.33  E-value=3.8e-07  Score=71.83  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=31.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      .+..|+|+||||+||||+++.||+.++.+++..+.
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~   83 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence            45789999999999999999999999999886553

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=98.32  E-value=4e-07  Score=69.97  Aligned_cols=33  Identities=30%  Similarity=0.448  Sum_probs=29.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+..|+|+||||||||++|+.|++.++.+++..
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            457899999999999999999999999888754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.31  E-value=6e-07  Score=68.04  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=28.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc-CCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST-QLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~   39 (176)
                      ..++.|+|+||||+|||+++++++..+ +.+++.
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~   76 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS   76 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence            345789999999999999999999998 766653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.30  E-value=7e-07  Score=61.76  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc----C--CeEeehhHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST----Q--LRHINIGELVR   45 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l----~--~~~~~~~~~~~   45 (176)
                      .++..++|+||+||||||+++.++..+    |  ..+++..++..
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~   80 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF   80 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            356889999999999999999998876    3  34556555543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.29  E-value=1.8e-06  Score=61.89  Aligned_cols=38  Identities=18%  Similarity=0.149  Sum_probs=30.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVR   45 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~   45 (176)
                      ++..++|+||||+||||+++.+++.++     +.+++.+++..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~   93 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS   93 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            567899999999999999999998763     34566665543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.28  E-value=7.1e-07  Score=68.51  Aligned_cols=34  Identities=29%  Similarity=0.539  Sum_probs=29.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ..+..|+|+||||+|||++|++++..++.+++..
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            3456799999999999999999999999887643

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.27  E-value=4.4e-07  Score=66.95  Aligned_cols=34  Identities=29%  Similarity=0.532  Sum_probs=29.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ..+..++|+||||+|||++|+.+++.++.+++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            4567899999999999999999999998887643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=98.26  E-value=2.5e-07  Score=68.05  Aligned_cols=34  Identities=29%  Similarity=0.550  Sum_probs=28.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ..+..++|+||||+||||+++.++..++.+++..
T Consensus        42 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           42 KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            3456689999999999999999999998776543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=98.26  E-value=6.7e-07  Score=62.91  Aligned_cols=35  Identities=29%  Similarity=0.436  Sum_probs=29.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      .+..|+|+||+||||||++..|+++.+ .+++.|..
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~   67 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV   67 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence            456899999999999999999999866 78875543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.24  E-value=8.8e-07  Score=66.16  Aligned_cols=32  Identities=34%  Similarity=0.496  Sum_probs=28.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .+..++|+||||+|||++++.+++.++.+++.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~   80 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            46789999999999999999999999876653

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=98.23  E-value=8.9e-07  Score=68.34  Aligned_cols=33  Identities=33%  Similarity=0.472  Sum_probs=28.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ....++|+||||+||||+|+.|++.++.+++..
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~  103 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS  103 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            456799999999999999999999998877654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.22  E-value=1.1e-06  Score=69.82  Aligned_cols=34  Identities=38%  Similarity=0.592  Sum_probs=29.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ..++.|+|+|||||||||++++++..++.+++..
T Consensus        47 ~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            3456799999999999999999999999887644

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.22  E-value=1.3e-06  Score=60.22  Aligned_cols=26  Identities=35%  Similarity=0.606  Sum_probs=23.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..++|+|++|+||||+++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999999986

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.22  E-value=1.1e-06  Score=67.42  Aligned_cols=33  Identities=30%  Similarity=0.478  Sum_probs=29.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ..+..|+|+||||+||||++++++..++.+++.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            356789999999999999999999999988764

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=98.21  E-value=1.1e-06  Score=69.54  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=28.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeeh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINI   40 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~   40 (176)
                      ..+..++|+||||+|||++|+++++.+|  ++++..
T Consensus        61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~   96 (456)
T 2c9o_A           61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM   96 (456)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence            3457899999999999999999999998  666543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.21  E-value=1.4e-06  Score=63.59  Aligned_cols=31  Identities=32%  Similarity=0.578  Sum_probs=26.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ++.++|.|||||||||+++.++..++..++.
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~   79 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT   79 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4559999999999999999999987655543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.19  E-value=1.1e-06  Score=60.46  Aligned_cols=26  Identities=35%  Similarity=0.558  Sum_probs=23.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....++|+|++|+||||+++.+++.+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999986

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.19  E-value=6e-05  Score=56.36  Aligned_cols=149  Identities=11%  Similarity=0.143  Sum_probs=75.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC-CeEeehhHHHhhcccCCCchhhhccccc-chHH-----------------
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-LRHINIGELVREKNLHDGWDDELECHVI-NEDL-----------------   66 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------   66 (176)
                      +..+++|+|+||   ||+|+.+.|.+.+. ...++.....|.+...+.-+.++.  +. +.+.                 
T Consensus       102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~--Fv~s~eef~~~i~~g~flE~~~~~  176 (295)
T 1kjw_A          102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH--FVSSREKMEKDIQAHKFIEAGQYN  176 (295)
T ss_dssp             CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBE--ECSCHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeE--ecCCHHHHHHHHHCCCcEEEEEEc
Confidence            456788999998   79999999988764 233454555555544433333322  22 2222                 


Q ss_pred             ------HHHHHHHHhh-cCCeEEcCCCCCC--CC-CCcccEEEEEeCC-hHHHHHHHhhcCCCCccccchhHHHHHHHHH
Q 030477           67 ------VCDELEDIME-QGGNIVDYHGCDF--FP-ERWFDRVVVLQTE-NSVLYDRLTKRGYTGAKLTNNIECEIFQVLL  135 (176)
Q Consensus        67 ------l~~~i~~~~~-~~~~vid~~~~~~--~~-~~~~~~vi~l~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~  135 (176)
                            -.+.+++.+. +..+|+|......  +. ....-.+||+.+| .+++.+ +.+|+..     +.. ..++....
T Consensus       177 g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~t~-----~~i-~~rl~~a~  249 (295)
T 1kjw_A          177 SHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRITE-----EQA-RKAFDRAT  249 (295)
T ss_dssp             TEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHH-HCTTSCH-----HHH-HHHHHHHH
T ss_pred             CcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHH-HHhcCCH-----HHH-HHHHHHHH
Confidence                  2233444443 3456776432110  11 0111268888866 566665 7666521     111 22333332


Q ss_pred             HHHHhcCCC--CcEEEecCCCHHHHHHHHHHHHHHH
Q 030477          136 EEAKESYPE--DIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       136 ~~~~~~~~~--~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                      .. +..+..  +.+ .+ +++.++..+.+..++...
T Consensus       250 ~~-e~~~~~~fd~v-iv-Nd~le~a~~~l~~ii~~~  282 (295)
T 1kjw_A          250 KL-EQEFTECFSAI-VE-GDSFEEIYHKVKRVIEDL  282 (295)
T ss_dssp             HH-HHHHGGGCSEE-EC-CSSHHHHHHHHHHHHHHH
T ss_pred             HH-HHhccccCeEE-EE-CcCHHHHHHHHHHHHHhc
Confidence            11 111221  333 33 347877777777777543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.18  E-value=1.4e-06  Score=65.11  Aligned_cols=39  Identities=21%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEe-ehhHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHI-NIGELV   44 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~-~~~~~~   44 (176)
                      ..++.+|.|+|++||||||+++.|+..++       ...+ +.|+++
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            34677899999999999999999988774       3445 777653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.17  E-value=2.8e-07  Score=70.43  Aligned_cols=29  Identities=28%  Similarity=0.564  Sum_probs=26.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRH   37 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~   37 (176)
                      .+.|+|.|++||||||+++.|++.+++++
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            45699999999999999999999998887

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.17  E-value=1.3e-06  Score=61.71  Aligned_cols=33  Identities=18%  Similarity=0.206  Sum_probs=27.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ++...++|.||||+||||+|..|++.++..+++
T Consensus        56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            345679999999999999999999988665554

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.15  E-value=2e-06  Score=66.78  Aligned_cols=33  Identities=33%  Similarity=0.556  Sum_probs=29.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .+..|+|+||||+|||++++.++..++.+++..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v  179 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI  179 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence            457899999999999999999999999888643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.15  E-value=1.7e-06  Score=65.62  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=28.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ....++|+|+||+||||+++.+++.++.+++..
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            456799999999999999999999998877644

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.15  E-value=1.9e-06  Score=68.07  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=28.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc-CCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST-QLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l-~~~~~~   39 (176)
                      ..++.|+|+||||+|||+++++++..+ +.+++.
T Consensus       165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~  198 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS  198 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE
Confidence            345789999999999999999999998 776653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.14  E-value=1.9e-06  Score=65.57  Aligned_cols=30  Identities=33%  Similarity=0.486  Sum_probs=26.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRH   37 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~   37 (176)
                      .+..++|+||||+||||+++.++..++..+
T Consensus        50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            346799999999999999999999987654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.14  E-value=2.1e-06  Score=69.08  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=29.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .++.++|+||||+||||+++.+++.+|+.++..
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            457899999999999999999999999887643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.12  E-value=3.3e-06  Score=59.35  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=28.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc---CC--eEeehhHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST---QL--RHINIGELVR   45 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l---~~--~~~~~~~~~~   45 (176)
                      ..++|+|++|+||||+++.++..+   +.  .+++..++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~   95 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR   95 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence            789999999999999999999876   33  3456665543

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.12  E-value=2e-05  Score=62.88  Aligned_cols=33  Identities=30%  Similarity=0.322  Sum_probs=27.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~   39 (176)
                      ..+.+|+|.|..||||+|+.+.|.+.+   |+.++.
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a   76 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQS   76 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEE
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEE
Confidence            457899999999999999999999988   444443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.12  E-value=1.5e-06  Score=59.85  Aligned_cols=102  Identities=17%  Similarity=0.145  Sum_probs=54.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccch---HHHHHHHHHHh-hcCCeEE
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE---DLVCDELEDIM-EQGGNIV   82 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~~-~~~~~vi   82 (176)
                      .++.+++|.||+||||||+++.+.  .|...++.+.+.. ... +..+.    ..+..   +.+........ .+...++
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~g-~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~   78 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCRG-LMS-DDEND----QTVTGAAFDVLHYIVSKRLQLGKLTVV   78 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHHH-HHC-SSTTC----GGGHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHHH-Hhc-Ccccc----hhhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            467799999999999999999874  3456666554432 111 11110    11111   11122222222 2334555


Q ss_pred             cCCCCCC-CCC---------CcccEEEEEeCChHHHHHHHhhcC
Q 030477           83 DYHGCDF-FPE---------RWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        83 d~~~~~~-~~~---------~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      +...... ..+         ...-.+++|+-|...+-.|...|.
T Consensus        79 ~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           79 DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred             ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence            5432110 000         011247889999999999988775

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.11  E-value=2.7e-06  Score=63.68  Aligned_cols=26  Identities=38%  Similarity=0.528  Sum_probs=23.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....++|+||||+|||++++.+++.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999999987

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.11  E-value=2.8e-06  Score=62.85  Aligned_cols=31  Identities=32%  Similarity=0.578  Sum_probs=25.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ++.++|.|||||||||+++.|+..++..++.
T Consensus        73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~  103 (278)
T 1iy2_A           73 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT  103 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence            4459999999999999999999987655543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.11  E-value=2.8e-06  Score=65.64  Aligned_cols=35  Identities=29%  Similarity=0.297  Sum_probs=30.3

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ...++.+|+|.|||||||||+++.|+..++..++.
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            35677899999999999999999999988776665

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.11  E-value=3.1e-05  Score=61.81  Aligned_cols=32  Identities=13%  Similarity=0.183  Sum_probs=27.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCeEee
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHIN   39 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~   39 (176)
                      .+.+|+|.|..||||+|+.+.|.+.+   |+.++.
T Consensus       299 ~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~  333 (500)
T 3czp_A          299 HSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVP  333 (500)
T ss_dssp             CEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEE
T ss_pred             CCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEE
Confidence            56789999999999999999999988   555554

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.11  E-value=2.3e-06  Score=57.26  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=23.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....|+|+|+||||||++|+.+++..
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            45678999999999999999998865

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.10  E-value=2.3e-06  Score=59.14  Aligned_cols=28  Identities=32%  Similarity=0.313  Sum_probs=23.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      |..+++++|+|++||||||+++.|...+
T Consensus         3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            3 KTMIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4457899999999999999999998764

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.10  E-value=2.9e-06  Score=67.79  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ...+..++|+||||+|||+++++++..++.+++..
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v  269 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            45667899999999999999999999998887643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.09  E-value=2.2e-06  Score=61.33  Aligned_cols=28  Identities=21%  Similarity=0.285  Sum_probs=24.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.+++|.||+||||||+++.|+..+
T Consensus        20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           20 MNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4578899999999999999999998865

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.09  E-value=3.4e-06  Score=67.46  Aligned_cols=33  Identities=33%  Similarity=0.572  Sum_probs=27.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .-++.++|+|||||||||++++|+..++.+++.
T Consensus        62 ~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~   94 (499)
T 2dhr_A           62 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT   94 (499)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            345569999999999999999999988766654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.08  E-value=2.1e-06  Score=59.60  Aligned_cols=27  Identities=41%  Similarity=0.621  Sum_probs=23.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      +.+.|.||+||||||+.+.|+..++..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            368899999999999999999887643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.06  E-value=2.8e-06  Score=64.13  Aligned_cols=36  Identities=25%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCe--EeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~~~   43 (176)
                      .+..++|+||||+||||+++.++..+   +.+  +++..++
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~   76 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   76 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence            45789999999999999999999977   544  4565554

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.04  E-value=4.2e-06  Score=66.15  Aligned_cols=32  Identities=31%  Similarity=0.442  Sum_probs=28.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ...++|+||||+||||+++.|++.++..++..
T Consensus        50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l   81 (447)
T 3pvs_A           50 LHSMILWGPPGTGKTTLAEVIARYANADVERI   81 (447)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence            35799999999999999999999998887654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=98.02  E-value=3.8e-06  Score=57.73  Aligned_cols=26  Identities=23%  Similarity=0.171  Sum_probs=23.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++++|.|+|++||||||++..|+..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            46789999999999999999998875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.02  E-value=4e-06  Score=59.37  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ..++.++.|.||+||||||+.+.|+..+.
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45778999999999999999999988663

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.99  E-value=4.1e-05  Score=54.89  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=25.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc---CCe--Eeehh
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST---QLR--HINIG   41 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~   41 (176)
                      ..|++.|++|+||||++-.++..+   |..  +++.|
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D   43 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE   43 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            458999999999999998888765   544  44554

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.98  E-value=4.5e-06  Score=62.77  Aligned_cols=31  Identities=29%  Similarity=0.438  Sum_probs=27.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      .+..++|+|++|+||||+++.+++.++.+++
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3467999999999999999999999887764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.97  E-value=1.5e-06  Score=58.01  Aligned_cols=27  Identities=15%  Similarity=0.271  Sum_probs=23.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ....|+|+|+||+|||++|+.++...+
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCC
Confidence            446799999999999999999988765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.97  E-value=6.3e-06  Score=63.14  Aligned_cols=27  Identities=33%  Similarity=0.601  Sum_probs=24.7

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      +..++|+||||+|||++++.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468999999999999999999999864

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.96  E-value=4.5e-05  Score=56.91  Aligned_cols=151  Identities=10%  Similarity=0.092  Sum_probs=76.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhcccccchH--------------------
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVINED--------------------   65 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------   65 (176)
                      ..++.|+|+||   ||+|+.+.|.+++.. ..++.+...+.+...+.-+.++.... ..+                    
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~-s~e~fe~~i~~~~flE~a~~~gn  173 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVS-SREQMERDIQNHLFIEAGQYNDN  173 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECS-CHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccC-CHHHHHHHHhcCceEEEEEEccc
Confidence            46678999998   599999999988754 33555555665554444333332110 111                    


Q ss_pred             ---HHHHHHHHHh-hcCCeEEcCCC--CCCCCCC-cccEEEEEeCC-hHHHHHHHhhcCCCCccccchhHHHHHHHHHHH
Q 030477           66 ---LVCDELEDIM-EQGGNIVDYHG--CDFFPER-WFDRVVVLQTE-NSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE  137 (176)
Q Consensus        66 ---~l~~~i~~~~-~~~~~vid~~~--~~~~~~~-~~~~vi~l~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  137 (176)
                         +..+.++..+ .+..+|+|...  ...+... ..-.+||+.+| .+++.+|+..|+.  +    .. ..+..+....
T Consensus       174 ~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~--e----~~-~~~~~r~~k~  246 (292)
T 3tvt_A          174 LYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE--E----QA-KKTYERAIKM  246 (292)
T ss_dssp             EEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCT--T----HH-HHHHHHHHHH
T ss_pred             eeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCc--h----hH-HHHHHHHHHH
Confidence               2234445444 34556776421  1011111 12257888764 6777776654432  1    11 1122222111


Q ss_pred             HHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477          138 AKESYPEDIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       138 ~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                       +..|.......+.+++.++..+.+..++...
T Consensus       247 -e~e~~~~fD~vIvNddle~a~~~l~~iI~~e  277 (292)
T 3tvt_A          247 -EQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQ  277 (292)
T ss_dssp             -HHHHTTTCSEEECCSSHHHHHHHHHHHHHHH
T ss_pred             -HHhhhhhCCEEEECcCHHHHHHHHHHHHHHh
Confidence             1223331112233456888888888777654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.95  E-value=3.9e-06  Score=63.37  Aligned_cols=27  Identities=7%  Similarity=0.073  Sum_probs=25.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++..++|+||||+|||++++.+++.+
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            477899999999999999999999987

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.95  E-value=6.8e-06  Score=66.54  Aligned_cols=32  Identities=28%  Similarity=0.557  Sum_probs=28.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ++..++|.|||||||||+++.|+..++.+++.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~  138 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR  138 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence            56789999999999999999999998776643

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.94  E-value=5.5e-06  Score=63.55  Aligned_cols=27  Identities=30%  Similarity=0.415  Sum_probs=24.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+..++|+||||+||||+++.+++.+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999887

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.94  E-value=7.6e-06  Score=62.88  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=23.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..++|+||+|+||||+++.+++.+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999876

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.92  E-value=7.1e-06  Score=61.85  Aligned_cols=32  Identities=34%  Similarity=0.454  Sum_probs=27.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +..+++.||||+||||+++.+++.++..++..
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            45778889999999999999999998777643

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.92  E-value=4.7e-06  Score=63.07  Aligned_cols=30  Identities=33%  Similarity=0.502  Sum_probs=26.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      +..++|.||||+|||++++.+++.++.+++
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            357999999999999999999999887654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.90  E-value=8e-06  Score=57.55  Aligned_cols=25  Identities=52%  Similarity=0.833  Sum_probs=22.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+.++|+|++|+||||+++.+++.+
T Consensus        38 ~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           38 IPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3459999999999999999999875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.89  E-value=9.4e-06  Score=62.15  Aligned_cols=33  Identities=27%  Similarity=0.480  Sum_probs=27.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc------CCeEee
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST------QLRHIN   39 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l------~~~~~~   39 (176)
                      ..+..++|+|++|+||||+++.+++.+      +..++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~   81 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVY   81 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence            356789999999999999999999877      665543

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.89  E-value=9.6e-06  Score=64.48  Aligned_cols=26  Identities=35%  Similarity=0.638  Sum_probs=23.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....++|+||||+|||++++.|++.+
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999999986

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=97.89  E-value=0.00023  Score=52.63  Aligned_cols=33  Identities=9%  Similarity=0.148  Sum_probs=27.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~   40 (176)
                      .+.+|+|.|..||||+++.+.|.+.+   |+.++..
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~  109 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF  109 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC
Confidence            46788999999999999999999988   4555543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.89  E-value=9e-06  Score=55.28  Aligned_cols=27  Identities=22%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||.||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            566789999999999999999999876

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.89  E-value=6.5e-06  Score=57.10  Aligned_cols=26  Identities=35%  Similarity=0.413  Sum_probs=22.5

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRH   37 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~   37 (176)
                      +|+|+|++||||||+|..|+.. |.++
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~   26 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQV   26 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence            4789999999999999999987 6543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.88  E-value=8.4e-06  Score=60.93  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=22.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++|+|||||||||+++.|++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            379999999999999999999986

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.88  E-value=9e-06  Score=57.96  Aligned_cols=26  Identities=35%  Similarity=0.503  Sum_probs=23.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +..++|+|++|+||||+++.+++.++
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35799999999999999999998774

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.86  E-value=1.4e-05  Score=58.60  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=23.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ....|+|+|+||+|||++++.+++.++
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            456799999999999999999998763

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.85  E-value=1.4e-05  Score=60.10  Aligned_cols=38  Identities=16%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC----Ce--EeehhHHHhh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ----LR--HINIGELVRE   46 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~----~~--~~~~~~~~~~   46 (176)
                      ...++|+||||+|||+++.+++..+.    ..  +++..+++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~  195 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID  195 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence            57899999999999999999987653    33  4566665443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.84  E-value=1.4e-05  Score=61.42  Aligned_cols=24  Identities=46%  Similarity=0.577  Sum_probs=22.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++|+||+|+||||+++.++..+
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            489999999999999999999887

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.83  E-value=1.3e-05  Score=56.75  Aligned_cols=37  Identities=16%  Similarity=0.064  Sum_probs=28.5

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcC--CeEeehh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQ--LRHINIG   41 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~~   41 (176)
                      ++.++.+++|.|++||||||++..|+...+  ..+++..
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~   54 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE   54 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence            456788999999999999999999986433  3345443

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.82  E-value=1.5e-05  Score=54.84  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=28.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ...-|+|+|+||+||||+|..|.+ -|+.+++ ||.
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lva-DD~   48 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID-RGHQLVC-DDV   48 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEE-SSE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEec-CCE
Confidence            456799999999999999999987 4887777 443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.82  E-value=1.4e-05  Score=59.96  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=26.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRH   37 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~   37 (176)
                      ..++..+.|.||+||||||+++.|+.-+.-.+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I  154 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV  154 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence            46788999999999999999999988663333

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.82  E-value=7.1e-06  Score=58.57  Aligned_cols=27  Identities=30%  Similarity=0.284  Sum_probs=23.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.++.++.|.||+||||||+++.|+..
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            456779999999999999999999874

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.80  E-value=1.1e-05  Score=58.49  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3577899999999999999999997643

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.80  E-value=1.2e-05  Score=57.28  Aligned_cols=28  Identities=36%  Similarity=0.351  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.+++|.|++||||||+++.|+..+
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998643

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.79  E-value=1.3e-05  Score=59.00  Aligned_cols=28  Identities=39%  Similarity=0.552  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.+++|+||+||||||+.+.|+..+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            4566789999999999999999998754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.77  E-value=1.7e-05  Score=62.62  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc-----CCe--EeehhHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST-----QLR--HINIGEL   43 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l-----~~~--~~~~~~~   43 (176)
                      +..++|+||||+||||+++.++..+     +..  +++..++
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~  171 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            5689999999999999999999876     443  4565554

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.76  E-value=1.8e-05  Score=55.11  Aligned_cols=26  Identities=31%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+++++|++||||||++..++.++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999997666654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.76  E-value=1.9e-05  Score=55.21  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=21.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+.|.|++||||||+.+.|+..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            468999999999999999998876

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.75  E-value=1.8e-05  Score=60.17  Aligned_cols=24  Identities=54%  Similarity=0.840  Sum_probs=21.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++|+||+|+||||+++.+++.+
T Consensus        47 ~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           47 PHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            348999999999999999999986

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.73  E-value=1.5e-05  Score=57.22  Aligned_cols=27  Identities=22%  Similarity=0.307  Sum_probs=23.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           28 KKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467799999999999999999997643

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.73  E-value=2.2e-05  Score=65.89  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=27.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc----------CCeEeehhH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST----------QLRHINIGE   42 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l----------~~~~~~~~~   42 (176)
                      ....++|+||||+||||+++.|++.+          +..++..+-
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~  244 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence            45679999999999999999999986          666665443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.73  E-value=1.6e-05  Score=57.65  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=24.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           28 IPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567899999999999999999997643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.73  E-value=2.2e-05  Score=59.00  Aligned_cols=26  Identities=38%  Similarity=0.457  Sum_probs=23.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|.|.||+||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            56799999999999999999998765

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.73  E-value=2.7e-05  Score=57.20  Aligned_cols=28  Identities=32%  Similarity=0.480  Sum_probs=24.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      +...|+|.||||+|||+++.+|+..++.
T Consensus       103 ~~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          103 KRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            4557999999999999999999986543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.73  E-value=1.1e-05  Score=60.90  Aligned_cols=27  Identities=30%  Similarity=0.311  Sum_probs=23.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      |.+.++++|+|+.||||||+.+.|...
T Consensus         1 m~~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            1 MNPIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             -CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCcccEEEEEecCCCCHHHHHHHHHhh
Confidence            346789999999999999999999853

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.72  E-value=1.8e-05  Score=56.91  Aligned_cols=27  Identities=26%  Similarity=0.183  Sum_probs=24.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++.++.|.|++||||||++..|+..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            457789999999999999999999874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.71  E-value=2.2e-05  Score=59.65  Aligned_cols=25  Identities=48%  Similarity=0.740  Sum_probs=22.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +.++|+||||+||||+++.+++.++
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4599999999999999999998863

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.69  E-value=2.2e-05  Score=57.72  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3577899999999999999999997644

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.69  E-value=9.4e-06  Score=55.90  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+.|.|++||||||+++.|+..+
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999998765

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.69  E-value=2.7e-05  Score=57.98  Aligned_cols=29  Identities=31%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.++.+++|.|+|||||||+++.|+..+
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35678899999999999999999998754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.68  E-value=2.2e-05  Score=59.74  Aligned_cols=25  Identities=48%  Similarity=0.671  Sum_probs=21.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+.++|+||+|+||||+++.|+..+
T Consensus        36 ~~~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           36 LPHLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3449999999999999999999964

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.68  E-value=2.2e-05  Score=58.15  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999999997643

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.68  E-value=3.2e-05  Score=58.00  Aligned_cols=26  Identities=50%  Similarity=0.782  Sum_probs=22.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+.++|+||+|+||||+++.+++.+
T Consensus        45 ~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           45 SMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            34469999999999999999999986

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.68  E-value=2.2e-05  Score=56.00  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=23.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           33 EKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467789999999999999999997643

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.67  E-value=3.3e-05  Score=54.48  Aligned_cols=24  Identities=38%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +++++++|+||||||++|..+...
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHH
Confidence            468999999999999999886443

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.67  E-value=3.9e-05  Score=57.96  Aligned_cols=34  Identities=26%  Similarity=0.283  Sum_probs=29.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ..++|+|++|+||||+++.+++..++.+++....
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~   65 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCREL   65 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecc
Confidence            6899999999999999999999888777776543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.67  E-value=2.4e-05  Score=57.70  Aligned_cols=27  Identities=26%  Similarity=0.309  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           35 ASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            467899999999999999999997643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.67  E-value=2.6e-05  Score=58.64  Aligned_cols=27  Identities=41%  Similarity=0.468  Sum_probs=23.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|+|+|++||||||++..|+..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            356789999999999999999998865

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.67  E-value=2.8e-05  Score=57.29  Aligned_cols=27  Identities=30%  Similarity=0.370  Sum_probs=24.0

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++.++.|.||+||||||+.+.|+.-
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            357789999999999999999999774

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.67  E-value=3e-05  Score=58.20  Aligned_cols=27  Identities=37%  Similarity=0.508  Sum_probs=24.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            456799999999999999999998865

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.66  E-value=2.6e-05  Score=57.40  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           47 IREGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            3567899999999999999999997644

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.66  E-value=3e-05  Score=56.61  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=23.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .++.++.|.|++||||||+.+.|+.-
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           27 PKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999999773

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.66  E-value=3e-05  Score=56.26  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=23.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+ .++.|.||+||||||+.+.|+.-+
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            46 789999999999999999998754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.66  E-value=2.7e-05  Score=59.15  Aligned_cols=27  Identities=37%  Similarity=0.386  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|.|.||+||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            457799999999999999999998765

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.66  E-value=2.3e-05  Score=57.93  Aligned_cols=28  Identities=21%  Similarity=0.259  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           42 LYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567899999999999999999997754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.66  E-value=2.4e-05  Score=57.00  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+.+.|+.-+
T Consensus        33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           33 KQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999997644

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.66  E-value=2.6e-05  Score=56.19  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467799999999999999999997654

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.66  E-value=1.6e-05  Score=60.34  Aligned_cols=25  Identities=44%  Similarity=0.538  Sum_probs=22.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ..++|+|+||+|||++++.+++.++
T Consensus        46 ~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           46 GGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             ceEEEECCCCccHHHHHHHHHHhCc
Confidence            4599999999999999999999876

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.65  E-value=2e-05  Score=57.31  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=24.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3567799999999999999999997643

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.65  E-value=2e-05  Score=55.99  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ++.++.|.||+||||||+.+.|+.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999976

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.65  E-value=2.7e-05  Score=57.16  Aligned_cols=28  Identities=25%  Similarity=0.281  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3577899999999999999999997643

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.64  E-value=3.5e-05  Score=58.93  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=23.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      +..++|+||+|+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.64  E-value=2.9e-05  Score=56.91  Aligned_cols=28  Identities=25%  Similarity=0.243  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3577899999999999999999997644

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.64  E-value=2.7e-05  Score=56.46  Aligned_cols=27  Identities=33%  Similarity=0.406  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467799999999999999999997644

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.64  E-value=2.8e-05  Score=57.01  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           31 NKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999997644

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.63  E-value=3.7e-05  Score=57.43  Aligned_cols=25  Identities=52%  Similarity=0.833  Sum_probs=22.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+.++|+||+|+||||+++.+++.+
T Consensus        38 ~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           38 IPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECcCCcCHHHHHHHHHHHh
Confidence            3459999999999999999999985

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.62  E-value=4.5e-05  Score=53.90  Aligned_cols=27  Identities=30%  Similarity=0.556  Sum_probs=23.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+...|+|.|++|+||||+...|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.61  E-value=2.9e-05  Score=57.17  Aligned_cols=28  Identities=29%  Similarity=0.376  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3577899999999999999999997643

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.61  E-value=3.1e-05  Score=55.74  Aligned_cols=27  Identities=37%  Similarity=0.498  Sum_probs=23.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++.+++|.|+|||||||++..++..
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            457789999999999999998888654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.60  E-value=3.4e-05  Score=56.33  Aligned_cols=27  Identities=30%  Similarity=0.410  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467789999999999999999997644

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.60  E-value=3.8e-05  Score=58.91  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++-++.|.||+||||||+.+.|+.-+
T Consensus        27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           27 LDPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            3567899999999999999999998744

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.59  E-value=5.1e-05  Score=63.67  Aligned_cols=34  Identities=24%  Similarity=0.520  Sum_probs=28.5

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHI--NIGELV   44 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~~   44 (176)
                      .++|+||||+|||++|+.|++.++.+++  +++++.
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~  525 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYM  525 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhc
Confidence            6999999999999999999999987664  555543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.58  E-value=3.7e-05  Score=57.04  Aligned_cols=27  Identities=26%  Similarity=0.297  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           45 AKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467799999999999999999997644

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.58  E-value=4.8e-05  Score=58.80  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++-++.|.||+||||||+.+.|+.-+
T Consensus        26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            3567899999999999999999998744

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.57  E-value=5e-05  Score=56.81  Aligned_cols=25  Identities=40%  Similarity=0.771  Sum_probs=22.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+.++|+||+|+||||+++.+++.+
T Consensus        42 ~~~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           42 MPHMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh
Confidence            3449999999999999999999885

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.57  E-value=3.9e-05  Score=56.12  Aligned_cols=27  Identities=26%  Similarity=0.255  Sum_probs=23.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           29 NKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999997643

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.57  E-value=4.6e-05  Score=52.77  Aligned_cols=29  Identities=21%  Similarity=0.360  Sum_probs=24.3

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ++..+...|+|.|.+|+||||+...|...
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           18 YPEGGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            33446789999999999999999999754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.57  E-value=4.7e-05  Score=56.96  Aligned_cols=26  Identities=38%  Similarity=0.512  Sum_probs=23.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|+|.|++||||||++..|+..+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998654

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.57  E-value=3.9e-05  Score=58.95  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+++|+|++||||||+.+.|+..+
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            366799999999999999999998865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.57  E-value=4.2e-05  Score=59.06  Aligned_cols=28  Identities=39%  Similarity=0.552  Sum_probs=24.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.+++|+||+||||||+.+.|+..+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3456789999999999999999998754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.57  E-value=4.3e-05  Score=58.63  Aligned_cols=26  Identities=42%  Similarity=0.599  Sum_probs=22.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..+|+|+||+||||||+.+.|+..+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            44589999999999999999997754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.56  E-value=3.5e-05  Score=56.99  Aligned_cols=27  Identities=19%  Similarity=0.155  Sum_probs=23.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.++.+++|.|++||||||++..++..
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            356789999999999999999999753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.56  E-value=5e-05  Score=58.32  Aligned_cols=27  Identities=37%  Similarity=0.508  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|.|.|++||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            456799999999999999999998865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.56  E-value=5.2e-05  Score=58.22  Aligned_cols=28  Identities=32%  Similarity=0.330  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            3567899999999999999999998743

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.56  E-value=3.7e-05  Score=61.55  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=23.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +..|+|+||||+|||++|+.|+..++
T Consensus        41 ~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           41 GESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CCeeEeecCchHHHHHHHHHHHHHHh
Confidence            45799999999999999999999874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.55  E-value=4.8e-05  Score=64.72  Aligned_cols=26  Identities=35%  Similarity=0.606  Sum_probs=23.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....++|+|+||+||||+++.|++.+
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            45578999999999999999999987

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.55  E-value=5.5e-05  Score=58.15  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            3567899999999999999999998744

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.54  E-value=5.7e-05  Score=58.27  Aligned_cols=28  Identities=29%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3567899999999999999999998743

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.54  E-value=0.00099  Score=55.71  Aligned_cols=150  Identities=11%  Similarity=0.131  Sum_probs=74.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC-eEeehhHHHhhcccCCCchhhhccccc-chH-------------------
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL-RHINIGELVREKNLHDGWDDELECHVI-NED-------------------   65 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------------   65 (176)
                      ..++.|+|+||   ||+|+.+.|.+.+.- ..++.....|.+...+.-+.++.  +. +.+                   
T Consensus       529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~--Fv~s~~~f~~~i~~~~flE~~~~~g  603 (721)
T 2xkx_A          529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH--FVSSREKMEKDIRAHKFIEAGQYNS  603 (721)
T ss_pred             CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeE--EecCHHHHHHHHhcCCceEEEEECC
Confidence            45688999999   499999999887642 23455555555544333222221  11 111                   


Q ss_pred             ----HHHHHHHHHhh-cCCeEEcCCCCC--CCC-CCcccEEEEEeCC-hHHHHHHHhhcCCCCccccchhHHHHHHHHHH
Q 030477           66 ----LVCDELEDIME-QGGNIVDYHGCD--FFP-ERWFDRVVVLQTE-NSVLYDRLTKRGYTGAKLTNNIECEIFQVLLE  136 (176)
Q Consensus        66 ----~l~~~i~~~~~-~~~~vid~~~~~--~~~-~~~~~~vi~l~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~  136 (176)
                          .-.+.+++.+. +..+|+|.....  .+. ...+-++||+.++ .+++.+ +..|+.+     +.. ..++.....
T Consensus       604 ~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~t~-----~~~-~~rl~~a~~  676 (721)
T 2xkx_A          604 HLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRITE-----EQA-RKAFDRATK  676 (721)
T ss_pred             ccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccCCH-----HHH-HHHHHHHHH
Confidence                22333444443 445677753210  011 0112268888866 555555 7666521     111 123332211


Q ss_pred             HHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477          137 EAKESYPEDIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       137 ~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                      . +..|.......+.+++.++..+.+..++...
T Consensus       677 ~-e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~  708 (721)
T 2xkx_A          677 L-EQEFTECFSAIVEGDSFEEIYHKVKRVIEDL  708 (721)
T ss_pred             H-HHhccccCcEEEECcCHHHHHHHHHHHHHhc
Confidence            1 1123332122233446777777777777544

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.53  E-value=5.6e-05  Score=57.91  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467799999999999999999998743

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.53  E-value=5.6e-05  Score=54.24  Aligned_cols=27  Identities=19%  Similarity=0.023  Sum_probs=23.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..+++++|++|+||||++..++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            356799999999999999999888776

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.52  E-value=5.4e-05  Score=56.80  Aligned_cols=26  Identities=35%  Similarity=0.580  Sum_probs=22.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....|+|+|+||+|||++|+.+++..
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhC
Confidence            45679999999999999999998854

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.52  E-value=6.6e-05  Score=59.81  Aligned_cols=27  Identities=41%  Similarity=0.465  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|.|.|++||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            467799999999999999999998765

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.51  E-value=6.6e-05  Score=57.69  Aligned_cols=28  Identities=21%  Similarity=0.175  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           51 VPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            3577899999999999999999997743

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.51  E-value=7.3e-05  Score=51.57  Aligned_cols=28  Identities=18%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +....+.|+|.|.+|+||||+...|...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3345678999999999999999999664

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.50  E-value=4.7e-05  Score=56.81  Aligned_cols=28  Identities=21%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+.-+
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3577899999999999999999997643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.49  E-value=6.8e-05  Score=57.84  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=23.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+.-+
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            467799999999999999999998743

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.48  E-value=4.1e-05  Score=58.57  Aligned_cols=28  Identities=25%  Similarity=0.279  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            3567899999999999999999998743

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.48  E-value=5.1e-05  Score=58.33  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=24.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      ...+.|.|++||||||+++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5688999999999999999999877543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.47  E-value=7.5e-05  Score=56.87  Aligned_cols=28  Identities=36%  Similarity=0.469  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+..++.|.|+|||||||+.+.|+..+
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            3567789999999999999999998643

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.47  E-value=3.4e-05  Score=57.99  Aligned_cols=28  Identities=21%  Similarity=0.253  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+.+.|+.-+
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            3577899999999999999999997644

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.47  E-value=5.8e-05  Score=59.33  Aligned_cols=26  Identities=38%  Similarity=0.378  Sum_probs=23.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|+++|++||||||++..|+..+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.46  E-value=6.5e-05  Score=58.31  Aligned_cols=27  Identities=22%  Similarity=0.303  Sum_probs=23.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++.++.|.||+||||||+.+.|+.-
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            356789999999999999999999763

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.45  E-value=6e-05  Score=56.91  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=26.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC--CeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ--LRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~--~~~~~~   40 (176)
                      ++..++|+||||+||||++..++...|  +.|++.
T Consensus       122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            456789999999999999999987533  446665

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.45  E-value=6.9e-05  Score=55.10  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.|.||+||||||+.+.|+.-+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999999997643

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.45  E-value=7.8e-05  Score=58.39  Aligned_cols=26  Identities=42%  Similarity=0.451  Sum_probs=23.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..+|+|+||+||||||+.+.|...+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            45689999999999999999998866

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.44  E-value=7.6e-05  Score=59.16  Aligned_cols=27  Identities=30%  Similarity=0.468  Sum_probs=24.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.|++||||||+++.|+.-+
T Consensus       136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          136 FEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            467899999999999999999998754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.44  E-value=8.5e-05  Score=57.00  Aligned_cols=35  Identities=17%  Similarity=0.191  Sum_probs=28.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeeh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINI   40 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~   40 (176)
                      ..++.+++|.|+||+||||+|..++..+     .+.+++.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            4577899999999999999999998654     3456665

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.44  E-value=7.5e-05  Score=58.80  Aligned_cols=26  Identities=38%  Similarity=0.488  Sum_probs=23.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|+++|++|+||||++..|+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            46799999999999999999998765

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.43  E-value=5.6e-05  Score=57.96  Aligned_cols=28  Identities=18%  Similarity=0.152  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|||||||||++..++..+
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567799999999999999999998764

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.43  E-value=0.00089  Score=51.96  Aligned_cols=97  Identities=13%  Similarity=0.085  Sum_probs=52.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCeEEcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGNIVDYH   85 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~vid~~   85 (176)
                      ..++.|+|+||+|   +|+.+.|.+.+.-.+.++   .+.+...+.-+.++  +|+    -.+.+++.+. +..+|+|..
T Consensus       230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~pR~gE~dG~~Y--~Fv----~~~~V~~~~~~Gk~~iLdId  297 (391)
T 3tsz_A          230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSEPRDAGTDQRSS--GII----RLHTIKQIIDQDKHALLDVT  297 (391)
T ss_dssp             SSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCCCCCSSSCCC----CCC----CHHHHHHHHTTTCEEEECCC
T ss_pred             CCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCCCCCcccCCccC--CcC----cHHHHHHHHHcCCEEEEEeC
Confidence            4678999999998   899999988875445442   23333333323333  233    2445555554 456777752


Q ss_pred             CC--CCCCC-CcccEEEEEeC-ChHHHHHHHhhcC
Q 030477           86 GC--DFFPE-RWFDRVVVLQT-ENSVLYDRLTKRG  116 (176)
Q Consensus        86 ~~--~~~~~-~~~~~vi~l~~-~~~~~~~R~~~r~  116 (176)
                      ..  ..+.. ...-.+||+.+ |.+++.+| ..|.
T Consensus       298 ~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r~  331 (391)
T 3tsz_A          298 PNAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRL  331 (391)
T ss_dssp             HHHHHHHHHTTCCCEEEEEECCCHHHHHHH-HHHH
T ss_pred             HHHHHHHHhCCCCCEEEEEeCcCHHHHHHH-HhcC
Confidence            21  01110 01125677766 46777665 4443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.43  E-value=8.7e-05  Score=56.78  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....|.|+|+|||||||+.+.|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998753

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.42  E-value=0.00011  Score=55.80  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      +..++|+||+|+||||+++.+++.+..
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            456999999999999999999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.42  E-value=8.3e-05  Score=52.68  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=23.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+.|+|+|.+||||||+...|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.42  E-value=9e-05  Score=56.04  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=24.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|.|+|++|+||||++..|+..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998765

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.41  E-value=0.00012  Score=51.32  Aligned_cols=28  Identities=14%  Similarity=0.051  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+.++++++|++||||||.+-.++.++
T Consensus         5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            5 KDHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3456799999999999999999998876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.41  E-value=0.00014  Score=61.13  Aligned_cols=26  Identities=35%  Similarity=0.478  Sum_probs=23.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..++|+|+||+||||+++.|++.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999999986

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.41  E-value=5.8e-05  Score=57.77  Aligned_cols=28  Identities=29%  Similarity=0.274  Sum_probs=24.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||++..|+...
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567899999999999999999998765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.40  E-value=0.0001  Score=51.25  Aligned_cols=26  Identities=15%  Similarity=0.333  Sum_probs=22.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+...|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999999764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.40  E-value=0.00012  Score=49.43  Aligned_cols=28  Identities=32%  Similarity=0.356  Sum_probs=23.9

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|.+...|+|.|.+|+||||+...|...
T Consensus         3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            3 HMTREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            3556788999999999999999999653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.40  E-value=7.8e-05  Score=51.29  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999763

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.40  E-value=4.8e-05  Score=58.29  Aligned_cols=28  Identities=25%  Similarity=0.278  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||+||||||+.+.|+.-+
T Consensus        28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           28 IENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3567899999999999999999998743

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.39  E-value=8.2e-05  Score=54.91  Aligned_cols=24  Identities=42%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+.|.|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            358899999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.39  E-value=7.2e-05  Score=51.98  Aligned_cols=23  Identities=17%  Similarity=0.434  Sum_probs=20.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|++||||||+.+.|+..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            47899999999999999999774

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.39  E-value=9.5e-05  Score=53.23  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=22.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..++.+++|+|+||+|||++|..++.
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            45778999999999999999988754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.39  E-value=0.0001  Score=56.48  Aligned_cols=27  Identities=33%  Similarity=0.489  Sum_probs=23.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+.+.|+|+|+||+||||++..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.39  E-value=8.7e-05  Score=50.18  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|++|+||||+.+.|...
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999999753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.38  E-value=7.6e-05  Score=56.68  Aligned_cols=26  Identities=35%  Similarity=0.482  Sum_probs=23.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++..++|+|++||||||+.+.|+..+
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999998765

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.37  E-value=0.00012  Score=60.07  Aligned_cols=27  Identities=37%  Similarity=0.644  Sum_probs=23.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ....++|.|||||||||+++.|+..++
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            446899999999999999999999763

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.36  E-value=0.00012  Score=48.89  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.|+|.|++|+||||+.+.|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999765

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.36  E-value=9.2e-05  Score=56.65  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=28.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIG   41 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~   41 (176)
                      ..++.++.|.|+|||||||++..++...     .+.+++..
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            4577899999999999999999998653     34556654

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.36  E-value=0.00032  Score=55.59  Aligned_cols=92  Identities=12%  Similarity=0.081  Sum_probs=47.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhh-cCCeEEcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIME-QGGNIVDYH   85 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~vid~~   85 (176)
                      ..+++|+|+||+|+|   +.+.|.+++.-.|.+.  ..+ +...+.-+.++  + +   +-.+.++..+. +..+|+|..
T Consensus       222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~--~TR-pR~gE~dG~~Y--~-F---Ts~~~V~~vl~~Gk~~iLdId  289 (468)
T 3shw_A          222 GFLRPVTIFGPIADV---AREKLAREEPDIYQIA--KSE-PRDAGTDQRSS--G-I---IRLHTIKQIIDQDKHALLDVT  289 (468)
T ss_dssp             SSCCCEEEESTTHHH---HHHHHHHHCTTTEEEC--CCB-C------------C-B---CCHHHHHHHHTTTCEEEECCC
T ss_pred             CCCCEEEEECCCHHH---HHHHHHHhCCCceeee--cCC-CCCcccccccC--C-c---ccHHHHHHHHHCCCeEEEEeC
Confidence            467899999999999   8888888775444442  233 33333222222  2 2   34455565554 456777752


Q ss_pred             CC--CCCCC-CcccEEEEEeCC-hHHHHH
Q 030477           86 GC--DFFPE-RWFDRVVVLQTE-NSVLYD  110 (176)
Q Consensus        86 ~~--~~~~~-~~~~~vi~l~~~-~~~~~~  110 (176)
                      ..  ..+.. ...-++|||.+| .+++.+
T Consensus       290 ~qg~~~l~~~~~~p~~IFI~PPS~e~L~~  318 (468)
T 3shw_A          290 PNAVDRLNYAQWYPIVVFLNPDSKQGVKT  318 (468)
T ss_dssp             HHHHHHHHHTTCCCEEEEEECSCHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEEEeCcCHHHHHH
Confidence            21  01110 011257777765 566654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.35  E-value=0.00013  Score=55.11  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=26.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC--eEeehh
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL--RHINIG   41 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~--~~~~~~   41 (176)
                      +.++|+|++|+||||+++.+++.++.  .+++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence            58999999999999999999987643  455544

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.35  E-value=8.9e-05  Score=57.74  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=22.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALA   30 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La   30 (176)
                      +.++.++.|+|+|||||||++..|+
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHH
Confidence            4577899999999999999999776

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.35  E-value=0.00015  Score=49.80  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      .+.+|+|+.||||||+.++|.--++
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            4889999999999999999976554

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.34  E-value=0.00015  Score=60.95  Aligned_cols=35  Identities=34%  Similarity=0.573  Sum_probs=27.9

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVR   45 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~   45 (176)
                      .++|+||||+|||++|+.|++.+   +  +..++++++..
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~  562 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME  562 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence            59999999999999999999986   3  34456666543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.33  E-value=0.00012  Score=49.78  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            5578999999999999999999764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.33  E-value=0.00021  Score=48.54  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=22.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .+...|+|.|.+|+||||+...|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4678999999999999999999965

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.33  E-value=0.00012  Score=57.64  Aligned_cols=26  Identities=42%  Similarity=0.579  Sum_probs=23.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|+|+|++|+||||++..|+..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998865

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.33  E-value=0.00018  Score=54.18  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.4

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..++.+++|+|+||+||||++..++...
T Consensus        64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           64 GYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             SBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999998654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.33  E-value=0.00012  Score=50.22  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=22.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5578999999999999999999763

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.32  E-value=0.00016  Score=54.72  Aligned_cols=28  Identities=25%  Similarity=0.268  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|+|+|||||||++..++...
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            4567899999999999999999998753

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=97.32  E-value=0.00013  Score=54.79  Aligned_cols=33  Identities=21%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE   42 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~   42 (176)
                      .+..|+|+|+||+||||+|-.|.+ -|..+++ ||
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~-DD  178 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVG-DD  178 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE-EE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe-CC
Confidence            356799999999999999999966 5777776 44

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.31  E-value=0.00011  Score=59.06  Aligned_cols=27  Identities=30%  Similarity=0.357  Sum_probs=23.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++..++|+||+||||||+.+.|...+
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            356679999999999999999998755

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.31  E-value=0.00011  Score=56.89  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=22.8

Q ss_pred             CCCeEEE--ECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILV--TGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l--~G~~GsGKSTla~~La~~l   33 (176)
                      .+..++|  +|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4567888  9999999999999998875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.0002  Score=49.42  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=23.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|++|+||||+...|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.31  E-value=0.00011  Score=51.29  Aligned_cols=24  Identities=17%  Similarity=0.386  Sum_probs=21.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|++||||||+.+.|...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            457899999999999999999764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.31  E-value=0.00018  Score=54.16  Aligned_cols=31  Identities=29%  Similarity=0.451  Sum_probs=26.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      .+..++|+|++|+||||++..|.++ |..++.
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~  173 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVA  173 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence            3567999999999999999999774 777776

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.30  E-value=0.00015  Score=55.30  Aligned_cols=28  Identities=29%  Similarity=0.157  Sum_probs=24.7

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ++.++.++.|+|+|||||||++..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3567789999999999999999999875

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.30  E-value=0.00014  Score=51.63  Aligned_cols=26  Identities=23%  Similarity=0.238  Sum_probs=23.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+.|+|.|.+|+||||+...|+..+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            56789999999999999999998764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.29  E-value=7.2e-05  Score=52.49  Aligned_cols=26  Identities=15%  Similarity=0.346  Sum_probs=22.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..++..|+|.|++||||||+.+.|..
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            45667899999999999999999954

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.28  E-value=0.00014  Score=48.86  Aligned_cols=25  Identities=16%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            4567999999999999999999763

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.28  E-value=0.00013  Score=48.70  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=21.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|++.|.+|+||||+.+.|...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999999764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.28  E-value=0.00015  Score=48.45  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+...|...
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999999754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.27  E-value=0.00018  Score=55.16  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++..+.|.|++|+||||+.+.|+..+
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            45689999999999999999997644

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.26  E-value=0.00018  Score=56.32  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=22.3

Q ss_pred             CCCCCe--EEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPN--ILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~--I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.++.+  +.|.|++||||||+.+.|+..
T Consensus        37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           37 VSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            345667  999999999999999999764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.25  E-value=0.0002  Score=53.65  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=22.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....+.|.|++||||||+.+.|. .+
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            45789999999999999999998 54

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.24  E-value=0.00015  Score=49.16  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=20.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|++|+||||+.+.|..
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999975

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.23  E-value=0.00025  Score=56.06  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=25.3

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..++.+++|.|+||+||||++..++..+
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999987753

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.23  E-value=0.0002  Score=55.13  Aligned_cols=36  Identities=19%  Similarity=0.161  Sum_probs=28.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIG   41 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~   41 (176)
                      ..++.+++|.|+||+||||+|..++...     .+.|++++
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            4577899999999999999999987754     34566654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.23  E-value=0.00026  Score=48.20  Aligned_cols=27  Identities=15%  Similarity=0.138  Sum_probs=22.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..+...|+|.|.+|+||||+.+.+...
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            346688999999999999999999754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.23  E-value=0.00016  Score=49.38  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=21.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ++..|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4467999999999999999999764

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.23  E-value=0.00022  Score=58.13  Aligned_cols=26  Identities=42%  Similarity=0.695  Sum_probs=22.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ...+++|+|+|||||||++..|+..+
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999998754

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.23  E-value=0.00017  Score=61.44  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=22.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++|+||||+|||++|+.|++.+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            378999999999999999999987

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.22  E-value=0.00017  Score=48.20  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999999764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.21  E-value=0.00018  Score=48.92  Aligned_cols=25  Identities=20%  Similarity=0.401  Sum_probs=21.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999999764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.21  E-value=0.00012  Score=50.61  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3458999999999999999999764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.20  E-value=0.00019  Score=54.62  Aligned_cols=27  Identities=37%  Similarity=0.431  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..+|.|+|++|+||||+...|+..+
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.19  E-value=0.00025  Score=57.29  Aligned_cols=28  Identities=29%  Similarity=0.353  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++-++.|.|++||||||+.+.|+..+
T Consensus        44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           44 VKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4577899999999999999999998744

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.18  E-value=0.00024  Score=48.83  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=20.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|++|+||||+.+.|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999999999975

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=97.18  E-value=0.00011  Score=60.11  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=25.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ..|+|.||||+|||++|+.+++.++..++.
T Consensus       328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~  357 (595)
T 3f9v_A          328 IHILIIGDPGTAKSQMLQFISRVAPRAVYT  357 (595)
T ss_dssp             CCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred             cceEEECCCchHHHHHHHHHHHhCCCceec
Confidence            379999999999999999999988655543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.17  E-value=0.00024  Score=53.07  Aligned_cols=26  Identities=38%  Similarity=0.448  Sum_probs=22.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|.|+|++|+||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45688899999999999999998765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.17  E-value=0.00018  Score=50.21  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+.+.|...
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            45678999999999999999999763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.17  E-value=0.00031  Score=48.55  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=22.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+...|...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567999999999999999999764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.17  E-value=0.00029  Score=55.77  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=22.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++|.|++||||||++..++..+
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHH
Confidence            489999999999999999998876

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.16  E-value=0.00018  Score=49.56  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=21.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            3458999999999999999999764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.16  E-value=0.00036  Score=50.70  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++..++++.|.+|+||||++..|+..+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            356788899999999999999998654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.16  E-value=0.00027  Score=55.72  Aligned_cols=29  Identities=17%  Similarity=0.164  Sum_probs=25.7

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..++..+.|.|++||||||+.+.|+...
T Consensus       153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          153 TVGRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            34678899999999999999999998865

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.16  E-value=0.00025  Score=49.34  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+.+.|...
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            45678999999999999999999754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.16  E-value=0.00024  Score=47.60  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=21.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.+|+||||+.+.|...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999999763

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.15  E-value=0.00012  Score=51.82  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=24.0

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+..+.+.|+|.|.+|+||||+...|...
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            33345678999999999999999999654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.15  E-value=0.00028  Score=47.85  Aligned_cols=25  Identities=32%  Similarity=0.508  Sum_probs=21.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            4568999999999999999999754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.15  E-value=0.00021  Score=51.45  Aligned_cols=25  Identities=28%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.14  E-value=0.00025  Score=57.80  Aligned_cols=27  Identities=19%  Similarity=0.356  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++..+.|.||+||||||+.+.|+.-+
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            567899999999999999999997754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.14  E-value=0.00024  Score=52.20  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++||||||+.+.|...
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999999654

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.13  E-value=0.00025  Score=47.96  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcC
Confidence            3467999999999999999999653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.13  E-value=0.00028  Score=52.83  Aligned_cols=26  Identities=19%  Similarity=0.265  Sum_probs=22.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....+.|.|++||||||+.+.|+...
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCcHHHHHHHhcccc
Confidence            35688999999999999999996543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.12  E-value=0.00023  Score=47.82  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            45789999999999999999975

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.12  E-value=0.00025  Score=56.82  Aligned_cols=26  Identities=38%  Similarity=0.475  Sum_probs=21.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|+|+|++||||||++..|+..+
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46689999999999999999999654

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.12  E-value=0.00019  Score=54.12  Aligned_cols=27  Identities=22%  Similarity=0.195  Sum_probs=23.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++.++.|+|+|||||||++..++..
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            456779999999999999999999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.11  E-value=0.00025  Score=54.16  Aligned_cols=28  Identities=18%  Similarity=0.171  Sum_probs=25.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++..+.|.|++||||||+.+.|+...
T Consensus        68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           68 CGIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4577899999999999999999998876

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.11  E-value=0.00017  Score=49.24  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +...|+|.|.+|+||||+...|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            457899999999999999999974

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.10  E-value=0.00028  Score=49.14  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999999754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.10  E-value=0.00033  Score=46.94  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=20.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHcC
Confidence            35799999999999999999953

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.10  E-value=0.00025  Score=55.40  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=21.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +...+.|.|++||||||+.+.|+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            344899999999999999999987

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.10  E-value=0.00027  Score=49.27  Aligned_cols=26  Identities=19%  Similarity=0.409  Sum_probs=22.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+...|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            35578999999999999999999764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.09  E-value=0.00026  Score=57.77  Aligned_cols=27  Identities=19%  Similarity=0.389  Sum_probs=24.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++..+.|.||+||||||+.+.|+.-+
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            567899999999999999999997754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.08  E-value=0.00037  Score=55.50  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+ .++.|.||+||||||+.+.|+.-+
T Consensus        28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           28 DE-LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence            45 789999999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.08  E-value=0.00024  Score=48.59  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=21.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            4568999999999999999999754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.07  E-value=0.0002  Score=49.87  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=20.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +...|+|.|.+|+||||+.+.|..
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999853

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.06  E-value=0.00043  Score=54.58  Aligned_cols=29  Identities=17%  Similarity=0.303  Sum_probs=25.1

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..++.+++|+|+||+||||++..++...
T Consensus       196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          196 TLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             CCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999987753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.00041  Score=56.86  Aligned_cols=27  Identities=33%  Similarity=0.414  Sum_probs=23.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||+||||||+.+.|+..+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            467899999999999999999998754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.05  E-value=0.00029  Score=57.69  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++..+.|.||+||||||+.+.|+.-+
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            4577899999999999999999997654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.05  E-value=0.00038  Score=48.14  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            5568999999999999999999763

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.04  E-value=0.0004  Score=49.47  Aligned_cols=26  Identities=19%  Similarity=0.515  Sum_probs=22.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+...|...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999653

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.04  E-value=0.00048  Score=52.41  Aligned_cols=29  Identities=17%  Similarity=0.261  Sum_probs=25.5

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..++-+++|.|+||+||||++..++..+
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.04  E-value=0.00042  Score=46.50  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999999764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.04  E-value=0.00043  Score=46.36  Aligned_cols=23  Identities=13%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|++|+||||+.+.|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.03  E-value=0.00029  Score=52.66  Aligned_cols=25  Identities=44%  Similarity=0.452  Sum_probs=22.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+|+++|++|+||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6688899999999999999998765

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.03  E-value=0.00027  Score=47.93  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .+...|+|.|.+|+||||+...|..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999999954

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.03  E-value=0.0003  Score=56.69  Aligned_cols=24  Identities=42%  Similarity=0.464  Sum_probs=21.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTAL   29 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~L   29 (176)
                      ..++.++.|.|++||||||+++.+
T Consensus        36 i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           36 LPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCCCHHHHHHHH
Confidence            346789999999999999999994

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.02  E-value=0.00046  Score=46.70  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999999754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.02  E-value=0.00037  Score=48.33  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .+...|+|.|++|+||||+...|..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            4567899999999999999999954

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.02  E-value=0.00049  Score=46.21  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=21.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3457999999999999999999754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.01  E-value=0.00044  Score=46.28  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=21.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+.+|+||.||||||+..+|.=-+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999996443

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.01  E-value=0.0004  Score=54.63  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=22.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|+++|++|+||||++..||..+
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46788999999999999999998654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.01  E-value=0.00032  Score=48.02  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|++|+||||+...|...
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999999754

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.00  E-value=0.0005  Score=48.82  Aligned_cols=27  Identities=15%  Similarity=0.073  Sum_probs=23.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+.+++|++||||||.+-.++.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            356788999999999999999988876

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.00  E-value=0.00046  Score=47.52  Aligned_cols=25  Identities=12%  Similarity=0.210  Sum_probs=21.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...+...
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999888653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.00  E-value=0.00035  Score=47.32  Aligned_cols=25  Identities=20%  Similarity=0.285  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999999764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.00  E-value=0.00047  Score=46.31  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|++|+||||+...|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999964

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.00  E-value=0.00037  Score=56.32  Aligned_cols=27  Identities=33%  Similarity=0.388  Sum_probs=23.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++.|.||.||||||+.+.|+..+
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            356789999999999999999997643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.00  E-value=0.00036  Score=48.14  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            458999999999999999999764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.00  E-value=0.00041  Score=56.88  Aligned_cols=28  Identities=32%  Similarity=0.368  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.|++||||||+.+.|+..+
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            4577899999999999999999997644

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.99  E-value=0.00035  Score=47.50  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=22.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4568999999999999999999764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.99  E-value=0.00039  Score=47.44  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            4468999999999999999999764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.99  E-value=0.00039  Score=56.22  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++-++.|.|++||||||+.+.|+.-+
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467789999999999999999997643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.99  E-value=0.00045  Score=46.32  Aligned_cols=23  Identities=30%  Similarity=0.496  Sum_probs=20.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|++|+||||+...|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            56899999999999999999753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.99  E-value=0.00043  Score=54.30  Aligned_cols=26  Identities=38%  Similarity=0.448  Sum_probs=23.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|+++|++||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46688899999999999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.97  E-value=0.00055  Score=48.09  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.97  E-value=0.00014  Score=54.68  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ++..+.|.|++|+||||+.+.|...
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHhccc
Confidence            5679999999999999999999543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.97  E-value=0.00026  Score=48.75  Aligned_cols=26  Identities=23%  Similarity=0.144  Sum_probs=22.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...|+|.|.+|+||||+.+.|...+
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhc
Confidence            34689999999999999999887654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.96  E-value=0.0005  Score=48.22  Aligned_cols=26  Identities=15%  Similarity=0.153  Sum_probs=22.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+...|...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            35568999999999999999999753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.96  E-value=0.00027  Score=48.22  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=21.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALA   30 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La   30 (176)
                      .+...|+|.|++|+||||+...|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            356789999999999999999985

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.96  E-value=0.00029  Score=59.70  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             CCCCeEEEECCCCCChHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTST   27 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~   27 (176)
                      ++.++++|||++|||||||+-
T Consensus        34 P~~~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           34 PRDALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             ESSSEEEEESSTTSSHHHHHT
T ss_pred             cCCCEEEEECCCCCCHHHHHH
Confidence            578899999999999999983

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.96  E-value=0.00044  Score=47.60  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            4468999999999999999999753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.95  E-value=0.00048  Score=47.18  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=21.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .+...|+|.|++|+||||+.+.|..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3567899999999999999999965

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.95  E-value=0.00058  Score=45.72  Aligned_cols=24  Identities=13%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +...|+|.|.+|+||||+...|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            346799999999999999999975

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.95  E-value=0.00046  Score=50.45  Aligned_cols=23  Identities=39%  Similarity=0.588  Sum_probs=20.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.|+|.|.|||||||+...|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            67999999999999999999654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.95  E-value=0.00054  Score=55.37  Aligned_cols=27  Identities=33%  Similarity=0.361  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++-++.|.|+.||||||+.+.|+..+
T Consensus       310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          310 KKGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467799999999999999999998743

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.95  E-value=0.00051  Score=48.07  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+...|...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34578999999999999999999753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.94  E-value=0.00046  Score=47.11  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457899999999999999999754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.94  E-value=0.00046  Score=50.21  Aligned_cols=25  Identities=28%  Similarity=0.557  Sum_probs=21.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999754

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.94  E-value=0.00048  Score=51.90  Aligned_cols=26  Identities=15%  Similarity=0.215  Sum_probs=21.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++ ++.|.|+|||||||++-.++..
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~   51 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSS   51 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            4456 7899999999999998877654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.94  E-value=0.00045  Score=47.38  Aligned_cols=25  Identities=36%  Similarity=0.418  Sum_probs=22.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999999654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.94  E-value=0.00047  Score=47.22  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|.+|+||||+...|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            46899999999999999999764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.93  E-value=0.00041  Score=55.89  Aligned_cols=28  Identities=36%  Similarity=0.414  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.+++|.|++||||||+++.++...
T Consensus       278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          278 FFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999998653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.93  E-value=0.00052  Score=47.24  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            358999999999999999999753

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.93  E-value=0.00061  Score=53.77  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=25.6

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..++.+++|+|+||+||||++..++...
T Consensus       193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          193 GYKRRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            45678899999999999999999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.93  E-value=0.00026  Score=57.71  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++..+.|.||+||||||+.+.|+.-+
T Consensus       364 i~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          364 IEKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3577899999999999999999997654

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=96.93  E-value=0.00055  Score=56.16  Aligned_cols=26  Identities=42%  Similarity=0.621  Sum_probs=21.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+.++|+|+|||||||++..+...+
T Consensus       163 ~~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          163 TRRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            35789999999999999988776543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.93  E-value=0.00066  Score=45.32  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|.+|+||||+...|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999754

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.93  E-value=0.00077  Score=52.17  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=22.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....++|.|++||||||+++.|...+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999997653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.91  E-value=0.0006  Score=55.91  Aligned_cols=27  Identities=37%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++-++.|.||.||||||+.+.|+..+
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467799999999999999999998743

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.90  E-value=0.00048  Score=46.97  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999999753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.90  E-value=0.00046  Score=47.99  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=21.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ....|+|.|.+|+||||+...|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.90  E-value=0.00055  Score=46.99  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=22.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .+...|+|.|.+|+||||+.+.|..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3567899999999999999999974

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.89  E-value=0.00061  Score=46.69  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|++|+||||+.+.|...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            4467899999999999999999764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.87  E-value=0.00067  Score=46.87  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +...|+|.|.+|+||||+.+.|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            456899999999999999999976

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.87  E-value=0.00034  Score=59.84  Aligned_cols=20  Identities=25%  Similarity=0.499  Sum_probs=18.6

Q ss_pred             CCCCeEEEECCCCCChHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTS   26 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla   26 (176)
                      ++.++++|+|++||||||||
T Consensus        42 P~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           42 PRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             ETTSEEEEEESTTSSHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHH
Confidence            57799999999999999997

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.87  E-value=0.0003  Score=60.08  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=19.2

Q ss_pred             CCCCCeEEEECCCCCChHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTS   26 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla   26 (176)
                      +++.++++|||++|||||+||
T Consensus        21 ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           21 IPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             EETTSEEEEEESTTSSSHHHH
T ss_pred             cCCCcEEEEECCCCCcHHHHH
Confidence            357899999999999999998

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.87  E-value=0.00043  Score=48.23  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +...|+|.|++|+||||+.+.|..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999954

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.87  E-value=0.00038  Score=56.87  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++..+.|.||+||||||+.+.|+.-+
T Consensus       366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          366 VKPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3567899999999999999999997654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.87  E-value=0.00066  Score=46.82  Aligned_cols=24  Identities=17%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.+|+||||+...|...
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            347999999999999999999764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.86  E-value=0.00044  Score=47.31  Aligned_cols=26  Identities=19%  Similarity=0.344  Sum_probs=21.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+.+.|...
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcC
Confidence            35568999999999999999999754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.86  E-value=0.00078  Score=45.72  Aligned_cols=25  Identities=16%  Similarity=0.389  Sum_probs=21.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3457999999999999999999753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.00074  Score=55.33  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=21.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +-++.|.|++||||||+.+.|+.-+
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCC
Confidence            3578999999999999999998743

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.85  E-value=0.00082  Score=52.17  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .++..+.|.|+||+||||+.++|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4567899999999999999999987

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.85  E-value=0.00077  Score=45.70  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=21.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            4468999999999999999999764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.85  E-value=0.0006  Score=47.70  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...+...
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            4568999999999999999999753

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.85  E-value=0.00042  Score=56.84  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      -+.|+|.|++||||||+.+.|+..
T Consensus        45 lp~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           45 LPAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCCEECCCCTTSCHHHHHHHHHSC
T ss_pred             CCeEEEECCCCChHHHHHHHHhCC
Confidence            356999999999999999999764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.85  E-value=0.0005  Score=48.00  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ....|+|.|.+|+||||+...|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.85  E-value=0.00063  Score=52.28  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALA   30 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La   30 (176)
                      .++..|+|.|.+||||||+++.+.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            467789999999999999999984

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.84  E-value=0.00077  Score=55.61  Aligned_cols=26  Identities=35%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ...+.+|.||||||||++.-.+...+
T Consensus       204 ~~~~~lI~GPPGTGKT~ti~~~I~~l  229 (646)
T 4b3f_X          204 QKELAIIHGPPGTGKTTTVVEIILQA  229 (646)
T ss_dssp             CSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34688999999999998766655543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.84  E-value=0.00056  Score=47.27  Aligned_cols=25  Identities=20%  Similarity=0.420  Sum_probs=21.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ...+.|+|.|.+|+||||+...|..
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3557899999999999999999954

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.83  E-value=0.00047  Score=47.64  Aligned_cols=25  Identities=16%  Similarity=0.381  Sum_probs=21.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            3468999999999999999999754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.83  E-value=0.00068  Score=47.05  Aligned_cols=26  Identities=15%  Similarity=0.243  Sum_probs=21.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+...|...
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45668999999999999999999653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.83  E-value=0.0006  Score=46.99  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|++|+||||+.+.|...
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999999763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.82  E-value=0.00066  Score=47.11  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=21.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+.+.+..+
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhc
Confidence            45679999999999999999988654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.82  E-value=0.00057  Score=48.19  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=21.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +...|+|.|.+|+||||+...|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            446899999999999999999965

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.81  E-value=0.00056  Score=47.10  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999999753

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=96.81  E-value=0.00058  Score=55.50  Aligned_cols=24  Identities=17%  Similarity=0.309  Sum_probs=21.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..++|+|+|++|+||||+++.++.
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Confidence            457899999999999999999864

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.81  E-value=0.00099  Score=51.61  Aligned_cols=28  Identities=25%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +..++..+.|.|++|+||||+++.|+..
T Consensus       170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          170 PIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             CCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            4567889999999999999999999774

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=96.80  E-value=0.00058  Score=51.22  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+.++|+||+|+||||+++.|++.
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~   41 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEY   41 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999999985

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.80  E-value=0.00078  Score=47.56  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+|+||||+...|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            35578999999999999999999764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.80  E-value=0.00059  Score=47.90  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3458999999999999999999764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.79  E-value=8.3e-05  Score=53.48  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.|.||+||||||+.++|+--+
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            45689999999999999998755

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.79  E-value=0.00076  Score=50.42  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|.|.|+||+||||+.+.|...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4458999999999999999999653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.78  E-value=0.00087  Score=46.20  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcC
Confidence            3468999999999999999999764

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.78  E-value=0.00079  Score=61.65  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=29.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc-----CCeEeehh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST-----QLRHINIG   41 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~   41 (176)
                      +.++..|+|+||||+||||+|.+++...     .+.|++..
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            4578899999999999999999997764     24466655

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.78  E-value=0.00075  Score=46.48  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+.+.|...
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            3458999999999999999999764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.77  E-value=0.00076  Score=49.72  Aligned_cols=25  Identities=36%  Similarity=0.473  Sum_probs=22.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999664

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.77  E-value=0.00035  Score=47.67  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=11.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ....|+|.|.+|+||||+...|..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEEECCCCC-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            356899999999999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.77  E-value=0.00055  Score=47.94  Aligned_cols=25  Identities=24%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            3468999999999999999999763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.76  E-value=0.00058  Score=51.11  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|++|+||||+.+.|..
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4679999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.001  Score=45.71  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=21.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999999764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.75  E-value=0.00095  Score=56.39  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=22.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .++.+++|+||.||||||+.+.++-
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iag  629 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTAL  629 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHH
Confidence            3567899999999999999999975

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.73  E-value=0.00095  Score=57.38  Aligned_cols=25  Identities=28%  Similarity=0.403  Sum_probs=22.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .++.++.|.|+.||||||+.+.|+.
T Consensus       459 ~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          459 KRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4678999999999999999999983

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.71  E-value=0.00093  Score=49.27  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.||+||||+.+.|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999999763

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.71  E-value=0.00077  Score=47.41  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            357999999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	2e-34
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	7e-27
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	9e-10
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	1e-09
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	1e-09
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	9e-09
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	2e-08
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	4e-08
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	4e-08
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	4e-08
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	3e-07
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	5e-07
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	1e-06
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	1e-06
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	2e-06
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	2e-06
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	2e-06
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	9e-06
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	1e-05
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	1e-05
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	2e-05
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	3e-05
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	3e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	4e-05
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	7e-05
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	3e-04
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	5e-04
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	7e-04
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	0.001
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.001
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	0.002
d2gnoa2	198	c.37.1.20 (A:11-208) gamma subunit of DNA polymera	0.002
d2qy9a2	211	c.37.1.10 (A:285-495) GTPase domain of the signal	0.002
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.002
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	0.004
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.004

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score =  117 bits (293), Expect = 2e-34
 Identities = 90/163 (55%), Positives = 120/163 (73%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           PNIL+TGTPG GKTT    LA  + L++IN+G+L RE+ L+DG+D+E +C +++ED V D
Sbjct: 5   PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 64

Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
           EL++ M +GG IVDYHGCDFFPERWF  V VL+T+ +VLY+RL  RGY   KLT+NI+CE
Sbjct: 65  ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 124

Query: 130 IFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNW 172
           IFQVL EEA  SY E+IV  L S+  E++  N+  +  W+  W
Sbjct: 125 IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW 167

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 98.2 bits (243), Expect = 7e-27
 Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 5/168 (2%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQ-LRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           NIL+TGTPGTGKT+ +  +A      +H+ +G+LV+E + +  +D EL+ H+I E     
Sbjct: 7   NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDR 66

Query: 70  ELEDIME----QGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNN 125
            L+ +      +G ++VDYH  + FPERWF  VVVL T   VL++RLTKR Y+ AK   N
Sbjct: 67  LLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAEN 126

Query: 126 IECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQ 173
           +E EI  +  EEA+++Y +DIVL  ++DT+E +   +  + + V   +
Sbjct: 127 MEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEVLK 174

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 52.8 bits (125), Expect = 9e-10
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 9/163 (5%)

Query: 9   RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVC 68
           + NI + G  G GK+T    LA+   +   +  + + ++   D                 
Sbjct: 2   KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDRE 61

Query: 69  DELEDIMEQGGNIVDYHGCDFFPE-------RWFDRVVVLQTENSVLYDRLTKRGYTGAK 121
           +++ + + +   IV   G                  VV L+T       R  +       
Sbjct: 62  EKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLL 121

Query: 122 LTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIEDITRNI 162
                  E+ + L  E    Y E  D+ +     + + +   I
Sbjct: 122 HVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQI 164

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 52.6 bits (125), Expect = 1e-09
 Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 22/174 (12%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG------WDDELECHVINE 64
            +L+ G PG GK T +  LAE   +  I+ GEL R                     ++  
Sbjct: 2   RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61

Query: 65  DLVCDELEDIMEQ----GGNIVDYHGCDFFPERWF-----------DRVVVLQTENSVLY 109
           DL  + ++D +       G I+D +       +             D V+  +    VL 
Sbjct: 62  DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLL 121

Query: 110 DRLTKRGYTGAKLTNNIEC-EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162
           +RL  RG         +   ++++       E Y + +       T++++    
Sbjct: 122 ERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARA 175

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 52.7 bits (125), Expect = 1e-09
 Identities = 24/171 (14%), Positives = 52/171 (30%), Gaps = 20/171 (11%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE---KNLHDGWDDELECHVINEDLVC 68
            ++TG  G GK+TT   LA          G+++           W+ +    +  +++  
Sbjct: 5   YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64

Query: 69  DELEDIMEQGGNIVDYHGCDFFPERWFDR-----------VVVLQTENSVLYDRLTKRGY 117
             +  ++ Q   ++DY       E                 ++L T    L  R   R  
Sbjct: 65  LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124

Query: 118 TGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI-AILTD 167
                   +E     ++ E   +   E            ++   +  + T+
Sbjct: 125 DEQMGERCLE-----LVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKTN 170

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 50.4 bits (119), Expect = 9e-09
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 27/184 (14%)

Query: 6   KRSRPN-ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINE 64
           ++S+PN + V G PG+GK T    +       H++ G+L+R++      D E+   +I  
Sbjct: 2   EKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN 61

Query: 65  DLVCDELEDIMEQGGNIVDYHGCDF-------------------FPERWFDRVVVLQTEN 105
             +   +  +      I    G +F                           V+      
Sbjct: 62  GEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPE 121

Query: 106 SVLYDRLTKRGYTGAKLTNNIE-----CEIFQVLLEEAKESYPE-DIVLALKSD-TIEDI 158
            V+  RL KRG +  +  +NIE        F V  +   + Y + D V  + ++  + ++
Sbjct: 122 EVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEV 181

Query: 159 TRNI 162
             ++
Sbjct: 182 YNDV 185

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 48.8 bits (115), Expect = 2e-08
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 7/157 (4%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDE 70
           NI+  G  G+GK+T + ALA+   L  ++   L+ +K      +   +           +
Sbjct: 2   NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQK 61

Query: 71  LEDIMEQGGNIVDYHGCDFFPERWFDR---VVVLQTENSVLYDRLTKRGYTGAKLTNNIE 127
           + D            G  F      ++    + L+ +   L  RL K   +   L  +  
Sbjct: 62  MADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDE- 120

Query: 128 CEIFQVLLEEAKESYPE--DIVLALKSDTIEDITRNI 162
               + L  E    Y +  + +L +++  I+++   I
Sbjct: 121 -IKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI 156

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.1 bits (113), Expect = 4e-08
 Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 7/160 (4%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK-----NLHDGWDDELECHVINE 64
           P  ++ G PG+GK+T    LA++  +  ++    + ++           D E E   I E
Sbjct: 2   PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEE 61

Query: 65  DLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTN 124
           D+V   L D                         VV    ++    R T        L  
Sbjct: 62  DVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAG 121

Query: 125 NIECEIFQVLLEEAKESYPE--DIVLALKSDTIEDITRNI 162
               E ++ L+ +    Y     + +         + R+I
Sbjct: 122 PDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHI 161

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 48.3 bits (114), Expect = 4e-08
 Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 15/168 (8%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG-----------WDDELE 58
             ++++G P +GK T    +    QL HI+ G+L+R +                    + 
Sbjct: 4   LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 63

Query: 59  CHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYT 118
             ++   +     +   ++ G ++D +   +      + + +      +L          
Sbjct: 64  DEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVER 123

Query: 119 GAKLTNNIEC----EIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162
                   +     E +   +E    +Y   IV      T++ +   I
Sbjct: 124 VVFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKI 171

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 48.4 bits (114), Expect = 4e-08
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDE 70
          N+++ G PG GK T +  +  +  + HI+ G++ R           L             
Sbjct: 2  NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRA---AMKEGTPLGLQA--------- 49

Query: 71 LEDIMEQGGNIVDYHGCDFFPERWFD 96
           +  M++G  + D        ER   
Sbjct: 50 -KQYMDRGDLVPDEVTIGIVRERLSK 74

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDE 70
          NI++ G PG GK T +  + E     HI+ G++ R               +     +  +
Sbjct: 2  NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFR-------------AAIQEGTELGVK 48

Query: 71 LEDIMEQGGNIVDYHGCDFFPERWF 95
           +  M+QG  + D        ER  
Sbjct: 49 AKSFMDQGALVPDEVTIGIVRERLS 73

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 27/185 (14%)

Query: 5   SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-----------GW 53
           S      I V G PG GK T    L +     H++ G+L+R +                 
Sbjct: 4   SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK 63

Query: 54  DDELECHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPE---------RWFDRVVVLQTE 104
           + ++    I   L+ + + D ++   +     G     +              ++     
Sbjct: 64  EGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCP 123

Query: 105 NSVLYDRLTKRGYTGAKLTNNIE-----CEIFQVLLEEAKESYPE-DIVLALKSD-TIED 157
             ++ +RL +RG T  +  +NIE        F+       E +     V+ ++ D ++ED
Sbjct: 124 EDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVED 183

Query: 158 ITRNI 162
           + +++
Sbjct: 184 VYKDV 188

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 12/121 (9%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
             + V G PG GK T    + E     H++ GEL+R++  +             +    +
Sbjct: 2   LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKN------------PDSQYGE 49

Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
            +E  +++G  +                +     +N  L D   +           ++ +
Sbjct: 50  LIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGK 109

Query: 130 I 130
            
Sbjct: 110 A 110

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 21/168 (12%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQLRHINIGELV-REKNLHDGWDDELECHVINEDLVCD 69
              + G PG+GK T S+ + +  +L+H++ G+L+              +  +    L+ D
Sbjct: 8   RAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPD 67

Query: 70  ELEDIMEQ--------------GGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKR 115
           ++   +                G                 D V+ L     V+  RLT R
Sbjct: 68  DVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDR 127

Query: 116 GYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTIEDITRNI 162
             T  K       + ++   E   E Y +  ++          I  ++
Sbjct: 128 PETVVK-----RLKAYEAQTEPVLEYYRKKGVLETFSGTETNKIWPHV 170

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE--KNLHDGWDDELECHVINEDLV 67
          P I + G  G GK T   A+AE+ Q   ++ G + R           D      +     
Sbjct: 4  PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLAS 63

Query: 68 CDELEDIMEQGGNIVDYHGCDFFPE 92
            ++  +   G   V   G D   E
Sbjct: 64 HLDVRFVSTNGNLEVILEGEDVSGE 88

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (102), Expect = 2e-06
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 13/85 (15%)

Query: 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDE 70
           I++ G P  GK T +  + E   +  I+ G++     L        E           +
Sbjct: 2  RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDM-----LRAAVKSGSEL--------GKQ 48

Query: 71 LEDIMEQGGNIVDYHGCDFFPERWF 95
           +DIM+ G  + D        ER  
Sbjct: 49 AKDIMDAGKLVTDELVIALVKERIA 73

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 28/170 (16%), Positives = 51/170 (30%), Gaps = 15/170 (8%)

Query: 10  PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCD 69
           P +      GTGKTT    L  +   R I  G        H   D +++    +   +  
Sbjct: 3   PLLAFAAWSGTGKTTLLKKLIPALCARGIRPG-----LIKHTHHDMDVDKPGKDSYELRK 57

Query: 70  ELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE 129
                  Q                  + + +    + +   +L      G K     +  
Sbjct: 58  AGAA---QTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIV 114

Query: 130 IFQVLLEEAKESYPED-IVLALKSDTIEDITR------NIAILTDWVRNW 172
           +F+       E    D  V+A+ SD   ++        ++  L D+V  W
Sbjct: 115 LFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEW 164

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 41.9 bits (97), Expect = 9e-06
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 1  MAQDSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGE-LVREKNLHDGWDDELEC 59
          M +  K+S+  I V G PG+GK T    + +     H++ G+ L  E +        L  
Sbjct: 1  MEEKLKKSK-IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSE 59

Query: 60 HVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVV 99
           +    LV  E    M +   +        F    + R V
Sbjct: 60 IMEKGQLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREV 99

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 41.5 bits (96), Expect = 1e-05
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 15/162 (9%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINI-GELVREKNLHDGWDDEL----ECHVINEDL 66
           +L++G PG+GK+T + ALA    +  ++   + +     H   D  L    + + +   +
Sbjct: 7   LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQI 66

Query: 67  VCDELEDIMEQGGNIV------DYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGA 120
             D      ++G  ++            F         +VL+T  +   +R   RG    
Sbjct: 67  AADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRG---- 122

Query: 121 KLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162
             + +    +  +  + A     E  VL +     +   ++ 
Sbjct: 123 GDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSA 164

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 13/86 (15%)

Query: 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDE 70
           +++ G PG GK T +  L E     H+  G++             L   +     +  E
Sbjct: 4  RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDM-------------LRSQIAKGTQLGLE 50

Query: 71 LEDIMEQGGNIVDYHGCDFFPERWFD 96
           + IM+QGG + D    +   +   +
Sbjct: 51 AKKIMDQGGLVSDDIMVNMIKDELTN 76

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQLRHINIGELVRE---KNLHDGWDDELECHVINEDLV 67
            I + G   +GK+T +  +A+     +++ G + R      L +    E    ++     
Sbjct: 5   QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQ 64

Query: 68  CDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTE 104
                   E G  +V     D       + V    + 
Sbjct: 65  HPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSA 101

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 40.3 bits (93), Expect = 3e-05
 Identities = 30/182 (16%), Positives = 61/182 (33%), Gaps = 31/182 (17%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIG---------ELVREKNLHDGWDD----ELE 58
           ++VTG PG G TT+S    ++ +   +N           E+ +E+NL    D     + E
Sbjct: 4   VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPE 63

Query: 59  CHVINEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVV-------------VLQTEN 105
                + +   ++ ++ ++    VD H     P+ +   +              V++T  
Sbjct: 64  TQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTG 123

Query: 106 SVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALK-----SDTIEDITR 160
             +  R          L      E  Q +   A  SY       +K     +  ++    
Sbjct: 124 DEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVE 183

Query: 161 NI 162
            +
Sbjct: 184 EL 185

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 11/162 (6%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQLRHINIGEL--------VREKNLHDGWDDELECHVI 62
            I + G  G G TT    LA +     ++            V +    +GW         
Sbjct: 4   PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESE 63

Query: 63  NEDLVCDELEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKL 122
               V      +   GG ++      F         +    E   L  + + + +    L
Sbjct: 64  ALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTL 123

Query: 123 TNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIEDITRNI 162
           T     E  + +L E +  Y +    V+   +     I   +
Sbjct: 124 TGRPIAEEMEAVLREREALYQDVAHYVVD-ATQPPAAIVCEL 164

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 4e-05
 Identities = 18/163 (11%), Positives = 47/163 (28%), Gaps = 18/163 (11%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDEL 71
            ++ G  G+GK+  ++ +A       ++   L   +N+      E       +  +    
Sbjct: 9   YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALN 68

Query: 72  EDIMEQGGNIVDYHGCDFFPERWF----------DRVVVLQTENSVLYDRLTKRG--YTG 119
           +                   ++ +             + L+ +  V+  RL  R   +  
Sbjct: 69  DAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFK 128

Query: 120 AKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162
            ++      E  Q    +  +    DI        +E +  + 
Sbjct: 129 TQMLVTQ-FETLQEPGADETDVLVVDI-----DQPLEGVVAST 165

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 17/136 (12%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDE 70
             ++ G PG GK T +  LA++  + H+  G++             L   V +   +  +
Sbjct: 5   RAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDM-------------LRAMVASGSELGKK 51

Query: 71  LEDIMEQGGNIVDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI 130
           L+  M+ G  + D    +         +     +N  L D   +       L + +E   
Sbjct: 52  LKATMDAGKLVSDEMVLEL----IEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRK 107

Query: 131 FQVLLEEAKESYPEDI 146
            ++            +
Sbjct: 108 EKLDSVIEFSIPDSLL 123

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 14/89 (15%), Positives = 29/89 (32%)

Query: 11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDE 70
          ++ +TG PG GKTT     +E  +   + +     E+    G     +   ++       
Sbjct: 3  HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62

Query: 71 LEDIMEQGGNIVDYHGCDFFPERWFDRVV 99
             +    G      G        F+++ 
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLA 91

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 15/113 (13%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINI----GELVREKNLHDGWDDEL------ECHV 61
           I++ G P  GKT  S  L        +          R   +      E       E   
Sbjct: 5   IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 64

Query: 62  INEDLVCDELED----IMEQGGNIVDYHGCDFFPE-RWFDRVVVLQTENSVLY 109
           I +      L D    + E+GG++  +   +   E R        Q      +
Sbjct: 65  IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFF 117

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 7e-04
 Identities = 11/47 (23%), Positives = 16/47 (34%)

Query: 12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELE 58
          ++  G PG GK+T       S    H+N   L   +         L 
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALR 63

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 18/123 (14%)

Query: 12  ILVTGTPGTGKTTTSTAL-AESTQLRHINIGELVREKNLHDGW-------DDELECHVIN 63
           IL  G PG+GK+T +    A++    +IN  +  +    H+           E     + 
Sbjct: 5   ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64

Query: 64  EDLVCDELEDIMEQGGNIVDYHG----------CDFFPERWFDRVVVLQTENSVLYDRLT 113
            D     L       G I+                     W     V     + L  R +
Sbjct: 65  FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124

Query: 114 KRG 116
           KRG
Sbjct: 125 KRG 127

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 17/167 (10%), Positives = 41/167 (24%), Gaps = 16/167 (9%)

Query: 11  NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDE 70
            + + G   +GK+     LA                     G +  ++     +  +  +
Sbjct: 9   TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQ 68

Query: 71  LEDIMEQGGNIVDYHGCDFF---------------PERWFDRVVVLQTENSVLYDRLTKR 115
                    +         F               P               +L +     
Sbjct: 69  RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV 128

Query: 116 GYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNI 162
                 L +  + + FQ LL++  + Y    +  ++S +  D    +
Sbjct: 129 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESPSYLDRYNQV 174

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 25/174 (14%), Positives = 53/174 (30%), Gaps = 19/174 (10%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINI-GELVREKNLHDGWDDELECHVINE------ 64
            L+ G PG+GKT+  +A+ E TQ   I I  +  ++++ +     +L    + +      
Sbjct: 35  FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS 94

Query: 65  -DLVCDELEDIMEQGGNIVDYHGCDFFPER--------WFDRVVVLQTENS---VLYDRL 112
             +    +  + +QG N+V                          +          Y   
Sbjct: 95  NRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT 154

Query: 113 TKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILT 166
            +R  T             +   +   ++ P ++    K+    DI        
Sbjct: 155 IERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGV 208

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 6  KRSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGELVREKN 48
          K    +IL+ G   +     S  L E  +    +  ++ E+  E  
Sbjct: 12 KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE 57

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 7/127 (5%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDEL 71
           IL+ G  G GKTTT   LA   + +  ++     +       +   +  V  +      +
Sbjct: 12  ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE---QLQVWGQRNNIPVI 68

Query: 72  EDIMEQGGNIVDYHGCDFFPERWFDRVVV----LQTENSVLYDRLTKRGYTGAKLTNNIE 127
                     V +        R  D ++          S L + L K      KL     
Sbjct: 69  AQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAP 128

Query: 128 CEIFQVL 134
            E+   +
Sbjct: 129 HEVMLTI 135

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 16/101 (15%)

Query: 12  ILVTGTPGTGKTTTSTALAESTQLRHINIGEL---------VREKNLHDGWDDELECHVI 62
            +VTG PG GK+T    + E    + IN   +           +       D+  +  V 
Sbjct: 4   GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63

Query: 63  NEDLVCDEL-EDIMEQ------GGNIVDYHGCDFFPERWFD 96
            +  +  +  + I E+      G   +D H     P  +  
Sbjct: 64  KQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLP 104

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.4 bits (77), Expect = 0.004
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 4   DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVIN 63
           D  R  P++L+ G  GTGK T   AL ES     +     +  +      + +LE +V++
Sbjct: 28  DQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYR-LKIDVRQFVTASNRKLELNVVS 86

Query: 64  EDLVCDELEDIMEQGGNIVDYHGCDFFPERW 94
                +     M     IV         +  
Sbjct: 87  SPYHLEITPSDMGNNDRIVIQELLKEVAQME 117

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 7/55 (12%), Positives = 14/55 (25%)

Query: 12 ILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDL 66
          I++ G    GK+     L        +  G     + +             + D 
Sbjct: 6  IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.95
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.95
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.88
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.85
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.85
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.84
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.83
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.83
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.82
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.82
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.81
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.81
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.81
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.8
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.79
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.78
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.78
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.78
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.77
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.77
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.76
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.73
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.72
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.69
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.66
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.65
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.63
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.62
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.62
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.61
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.58
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.56
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.55
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.54
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.54
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.51
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.49
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.48
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.47
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.45
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.44
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.42
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.36
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.35
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.32
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.3
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.27
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.2
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.09
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.99
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.98
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.92
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.9
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.9
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.89
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.89
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.89
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.89
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.87
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.84
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.7
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.65
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.64
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.64
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.62
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.62
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.6
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.59
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.48
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.47
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.46
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.46
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.41
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.34
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.34
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.22
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.19
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.16
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	98.12
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.11
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.06
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.02
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.99
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.98
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.94
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.93
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.93
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.92
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.92
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.91
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.89
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.89
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.87
d1okkd2	207	GTPase domain of the signal recognition particle r	97.84
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.81
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.81
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.8
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.8
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.79
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.78
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.76
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.76
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.76
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.75
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.75
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.74
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.74
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.73
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.72
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.71
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.71
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.7
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.68
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.67
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.66
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.64
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.64
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.63
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.62
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.61
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.61
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.6
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.59
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.58
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.57
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.56
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.52
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.52
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.52
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.49
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.49
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.45
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.45
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.4
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.39
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.38
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.38
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.37
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.36
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.35
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.34
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.34
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.34
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.33
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.29
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.29
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.28
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.28
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.26
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.25
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.22
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.22
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.17
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.16
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.13
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.11
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.11
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.1
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.05
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.03
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.02
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.01
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.97
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.96
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.96
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.92
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.92
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.92
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.91
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.89
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.88
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.87
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.85
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.85
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.84
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.83
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.82
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.81
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.81
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.8
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.8
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.79
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.79
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.79
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.76
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.75
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.74
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.74
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.73
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.69
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.69
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.69
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.69
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.65
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.65
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.62
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.6
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.58
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.58
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.56
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.55
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.52
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.51
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.49
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.49
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.49
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.46
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	96.45
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.45
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.43
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.43
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.4
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.39
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.39
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.38
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.35
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.34
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.24
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.2
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.15
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.15
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.12
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	96.03
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.98
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.9
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.86
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.78
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.78
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.76
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.72
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.65
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.63
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.55
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.53
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.51
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.5
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.46
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.35
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	95.33
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	95.25
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.17
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.08
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.08
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.04
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.98
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	94.97
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	94.96
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.76
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.69
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.69
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	94.66
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	94.63
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.61
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.59
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.54
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	94.54
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.46
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.42
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.37
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	94.29
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	94.18
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	94.17
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.14
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.12
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.79
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.76
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.7
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.69
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.65
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	93.48
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.23
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.19
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	91.28
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	89.98
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	88.68
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	88.43
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	85.57
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	85.38
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	84.51
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	84.49
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	84.46
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	83.28
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	82.8
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	81.89
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	81.83
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	81.46
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	81.24
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	81.05
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	80.29

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.95  E-value=2.4e-27  Score=163.13  Aligned_cols=167  Identities=54%  Similarity=0.989  Sum_probs=132.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCCCC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYHGC   87 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~~~   87 (176)
                      -.+.|+|+|||||||||+|+.|++++|+++++.++..+.......+.............+.+.+.......+..++....
T Consensus         3 ~~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (173)
T d1rkba_           3 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHGC   82 (173)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCSSSSCCCBCHHHHHHHHHHHHHHCCEEEECSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhHHhhhhhHHHHHHHHHhhhhhhcCCcccchhHH
Confidence            35788999999999999999999999999999999988766554444333333334456666666666666777776666


Q ss_pred             CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHHHHHHHH
Q 030477           88 DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus        88 ~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      ..++......+|||+||++++.+|+.+|++..+...++...+.+...+.++.+.|....++.+++.+++++.+.+.++++
T Consensus        83 ~~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~i~~~~~~~~~~~~~i~~Ii~  162 (173)
T d1rkba_          83 DFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILK  162 (173)
T ss_dssp             TTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcceecCCHHHHHHHHHhcCCCcccccccchhhhHHHHHHHHHHHhhhccEEEECCCCHHHHHHHHHHHHH
Confidence            67777677889999999999999999998766655555555666777777778888888888888899999999999999


Q ss_pred             HHHhhcc
Q 030477          168 WVRNWQP  174 (176)
Q Consensus       168 ~~~~~~~  174 (176)
                      +++.|.+
T Consensus       163 ~i~~~~k  169 (173)
T d1rkba_         163 WIEQWIK  169 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.95  E-value=7.2e-27  Score=161.04  Aligned_cols=167  Identities=43%  Similarity=0.751  Sum_probs=124.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC-CeEeehhHHHhhcccCCCchhhhcccccch---HHHHHHHHHHh-hcCCeE
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ-LRHINIGELVREKNLHDGWDDELECHVINE---DLVCDELEDIM-EQGGNI   81 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~~-~~~~~v   81 (176)
                      +++..|+|+|||||||||+|+.|+++++ +.+++.+++.....................   ..+.+.+.... ..++++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   82 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHV   82 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEEE
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhccccc
Confidence            4678899999999999999999999996 567776766665544333333333333322   33444444444 446678


Q ss_pred             EcCCCCCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEEEecCCCHHHHHHH
Q 030477           82 VDYHGCDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVLALKSDTIEDITRN  161 (176)
Q Consensus        82 id~~~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ev~~~  161 (176)
                      ++......+....++.+|||+||++++.+|+.+|+...+...++...+.+...+.+..+.|..+.++++++.+++++.+.
T Consensus        83 ~~~~~~~~~~~~~~~~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~t~ee~~~~  162 (174)
T d1y63a_          83 VDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAAT  162 (174)
T ss_dssp             EECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEECSSHHHHHHH
T ss_pred             ccHHHHHHHHHhcCceEEEEECCHHHHHHHHHhCCCcccccccchhhhhhhhhHHHHHHhhcCCEEEECCCCCHHHHHHH
Confidence            88777777776667789999999999999999998765555555555667777777888888888998888899999999


Q ss_pred             HHHHHHHHHhhc
Q 030477          162 IAILTDWVRNWQ  173 (176)
Q Consensus       162 i~~~~~~~~~~~  173 (176)
                      |.++++++..|+
T Consensus       163 V~~I~~~i~~~~  174 (174)
T d1y63a_         163 VEEIRERVEVLK  174 (174)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhC
Confidence            999999999885

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.88  E-value=8.9e-22  Score=137.90  Aligned_cols=159  Identities=21%  Similarity=0.359  Sum_probs=100.9

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHHh---h
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDIM---E   76 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~~---~   76 (176)
                      .++|++|+|.|||||||||+|+.|++++|+.+++.+++++..... ...+.....     .+.........+....   .
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQ   82 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTST
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhh
Confidence            457889999999999999999999999999999999998765321 122221111     1112222333332222   3


Q ss_pred             cCCeEEcCCCCCCCCCC---------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHHHHH
Q 030477           77 QGGNIVDYHGCDFFPER---------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLEEAK  139 (176)
Q Consensus        77 ~~~~vid~~~~~~~~~~---------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~~~~  139 (176)
                      ..++++|.     ++..               .++++|+|++|++++.+|+..|+.......+..+  ..++..+.....
T Consensus        83 ~~~~i~dg-----~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~  157 (194)
T d1qf9a_          83 GKNFLVDG-----FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTK  157 (194)
T ss_dssp             TCCEEEET-----CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHH
T ss_pred             cCCeEEEe-----cchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHH
Confidence            36788883     3321               2668999999999999999887654333333322  123333333222


Q ss_pred             ---hcCCC-CcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          140 ---ESYPE-DIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       140 ---~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                         ..|.. +.++.+|+. ++++|.+.|..+++.+
T Consensus       158 ~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~~  192 (194)
T d1qf9a_         158 LVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKSM  192 (194)
T ss_dssp             HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence               23433 445566654 8999999999888653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.85  E-value=1.6e-20  Score=131.03  Aligned_cols=153  Identities=18%  Similarity=0.350  Sum_probs=98.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC-ch----hhhccccc-chHHHHHHHHH-----Hhh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG-WD----DELECHVI-NEDLVCDELED-----IME   76 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~-~~~~l~~~i~~-----~~~   76 (176)
                      +|+.|+|.|||||||||+|+.|++++|+++++.+++++....... ..    ........ ........+..     ...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   81 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   81 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccc
Confidence            678899999999999999999999999999999998876532111 11    11111111 11111122211     223


Q ss_pred             cCCeEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH---HHhc
Q 030477           77 QGGNIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE---AKES  141 (176)
Q Consensus        77 ~~~~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~  141 (176)
                      ..++++|.     +++.            .++.+|+|++|++++.+|+..|+.. +..     ..++..+++.   ..+.
T Consensus        82 ~~~~vid~-----~~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~-e~~-----~~rl~~y~~~~~~l~~~  150 (189)
T d1zaka1          82 ENGWLLDG-----YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDDTE-EKV-----KLRLETYYQNIESLLST  150 (189)
T ss_dssp             HTCEEEES-----CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCT-THH-----HHHHHHHHHHHHHHHHT
T ss_pred             cCcEEeec-----cchhhHHHhhhhhcccccchheeechhhhhhhhhccccchH-HHH-----HHHHHHHHHHHHHHHHH
Confidence            46888884     3331            3678999999999999999766532 111     1234444333   3345


Q ss_pred             CCCCcEEEecCC-CHHHHHHHHHHHHHHHHhh
Q 030477          142 YPEDIVLALKSD-TIEDITRNIAILTDWVRNW  172 (176)
Q Consensus       142 ~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~~~  172 (176)
                      |. +.++.+|+. +++++.+.|..+++.+..-
T Consensus       151 y~-~~~~~Id~~~~idev~~~I~~~l~~il~~  181 (189)
T d1zaka1         151 YE-NIIVKVQGDATVDAVFAKIDELLGSILEK  181 (189)
T ss_dssp             TC-CCEEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hC-CCEEEEECCCCHHHHHHHHHHHHHHHhhh
Confidence            65 456666654 8999999999998777543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.85  E-value=4.4e-21  Score=130.73  Aligned_cols=148  Identities=18%  Similarity=0.230  Sum_probs=91.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchh---h-hcccccchHHHHHHHHHHhhcCCeEEcCC-
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDD---E-LECHVINEDLVCDELEDIMEQGGNIVDYH-   85 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~i~~~~~~~~~vid~~-   85 (176)
                      .|+|+|+|||||||+++.||+++|++|+|.|++++..... ....   . ....+...+  ...++.+.....+|+... 
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g~-~i~~~~~~~g~~~~r~~e--~~v~~~l~~~~~~v~~~~g   78 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQ-KVSEIFEQKRENFFREQE--QKMADFFSSCEKACIATGG   78 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTS-CHHHHHHHHCHHHHHHHH--HHHHHHHTTCCSEEEECCT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHhh-hhhhHHHhhhhccchhhh--hhhchhhhhcccccccccc
Confidence            5889999999999999999999999999999987654211 1111   0 000111100  111222334445555321 


Q ss_pred             ---CCCCCCCCcccEEEEEeCChHHHHHHHhhcCC-CCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHHHHH
Q 030477           86 ---GCDFFPERWFDRVVVLQTENSVLYDRLTKRGY-TGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIEDIT  159 (176)
Q Consensus        86 ---~~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~ev~  159 (176)
                         ....+..  .+.+|||++|++++.+|+..|.. .++...+..   .+..+++++.+.|.+  +.++++++.+++++.
T Consensus        79 ~~~~~~~l~~--~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~---~~~~l~~~r~~~Y~~~ad~~Idt~~~s~eei~  153 (161)
T d1viaa_          79 GFVNVSNLEK--AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEI---KAKKLYNERLSKYEQKANFILNIENKNIDELL  153 (161)
T ss_dssp             TGGGSTTGGG--GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHH---HHHHHHHHHHHHHHHHCSEEEECTTCCHHHHH
T ss_pred             chhhHHHHHh--CCeEEEeccchHHHHHHHccccccccccccCch---HHHHHHHHHHHHHHhhCCEEEECCCCCHHHHH
Confidence               1222322  46799999999999999976653 233333322   344455555555543  678888878999998


Q ss_pred             HHHHHHH
Q 030477          160 RNIAILT  166 (176)
Q Consensus       160 ~~i~~~~  166 (176)
                      +.|.+++
T Consensus       154 ~~I~~~i  160 (161)
T d1viaa_         154 SEIKKVI  160 (161)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8887765

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.84  E-value=2.8e-20  Score=129.78  Aligned_cols=156  Identities=20%  Similarity=0.300  Sum_probs=99.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-Cchhhh----cc-cccchHHHHHHHHH----Hhhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-GWDDEL----EC-HVINEDLVCDELED----IMEQ   77 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-~~~~~~----~~-~~~~~~~l~~~i~~----~~~~   77 (176)
                      ++..|+|.|||||||||+|+.||+++|+.+++.+++++...... ..+...    .. .....+.+...+..    ....
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~   81 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK   81 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGT
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccccc
Confidence            56778899999999999999999999999999999998643221 111111    11 11122333333333    3345


Q ss_pred             CCeEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH---H
Q 030477           78 GGNIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE---A  138 (176)
Q Consensus        78 ~~~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~---~  138 (176)
                      .++++|     .+|+.                .+.++++++++.+++.+|+..|........+.. ..++..+...   .
T Consensus        82 ~g~ii~-----g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i-~~R~~~y~~~~~p~  155 (190)
T d1ak2a1          82 NGFLLD-----GFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKAL-KIRLEAYHTQTTPL  155 (190)
T ss_dssp             TCEEEE-----SCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHH-HHHHHHHHHHHHHH
T ss_pred             Cceeec-----ccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCCchhhHHH-HHHHHHHHHHHHHH
Confidence            789998     55553                245789999999999999998864332222111 1223333332   2


Q ss_pred             HhcCCC-CcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          139 KESYPE-DIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       139 ~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                      .+.|.+ +.+..+|+. ++++|.+.|..+++..
T Consensus       156 ~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~k~  188 (190)
T d1ak2a1         156 VEYYSKRGIHSAIDASQTPDVVFASILAAFSKA  188 (190)
T ss_dssp             HHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            334444 445555554 8999999999988754

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.83  E-value=4.7e-20  Score=128.70  Aligned_cols=152  Identities=20%  Similarity=0.314  Sum_probs=99.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhh----ccc-ccchHHHHHHHHHHh---hc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDEL----ECH-VINEDLVCDELEDIM---EQ   77 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~----~~~-~~~~~~l~~~i~~~~---~~   77 (176)
                      .+++.|+|.|||||||||+|+.||+++|+.+++.+++++..... ...+...    ... ....+.+...+...+   ..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~   83 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLTQ   83 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhhh
Confidence            46788999999999999999999999999999999999865321 1111111    111 123334444444322   34


Q ss_pred             CCeEEcCCCCCCCCCC-----------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-C
Q 030477           78 GGNIVDYHGCDFFPER-----------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-D  145 (176)
Q Consensus        78 ~~~vid~~~~~~~~~~-----------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  145 (176)
                      .++++|     ++|+.           .++.+|+|++|.+++.+|+..|.   +....  ..+.+........+.|.+ +
T Consensus        84 ~~~ild-----GfPr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~~~r~---e~~~k--r~~~y~~~~~~v~~~Y~~~~  153 (189)
T d2ak3a1          84 YNWLLD-----GFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDRP---ETVVK--RLKAYEAQTEPVLEYYRKKG  153 (189)
T ss_dssp             SCEEEE-----SCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTGSH---HHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcccc-----cccchhhHHHHhhhcCcceEEEEEeccchhhhhhcccch---HHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence            678998     55553           25789999999999999997653   11111  111222222333445654 5


Q ss_pred             cEEEecCCCHHHHHHHHHHHHHH
Q 030477          146 IVLALKSDTIEDITRNIAILTDW  168 (176)
Q Consensus       146 ~~i~~~~~s~~ev~~~i~~~~~~  168 (176)
                      .++.+++.++++|.+.+...++.
T Consensus       154 ~l~~idg~~~~eV~~~I~~~i~~  176 (189)
T d2ak3a1         154 VLETFSGTETNKIWPHVYAFLQT  176 (189)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHT
T ss_pred             CEEEECCCChHHHHHHHHHHHHH
Confidence            67788887888899888888753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1e-19  Score=125.77  Aligned_cols=146  Identities=15%  Similarity=0.285  Sum_probs=91.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-CCCchhhh----ccccc-chHHHHHHHHHHh----hcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-HDGWDDEL----ECHVI-NEDLVCDELEDIM----EQGG   79 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~-~~~~l~~~i~~~~----~~~~   79 (176)
                      +.|+|.|||||||||+|+.|++++|+.+++.+++++.... ....+...    ..... ....+...+...+    ...+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            4688999999999999999999999999999999876522 12222221    11111 2233333333322    3467


Q ss_pred             eEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH---HHhcCC-
Q 030477           80 NIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE---AKESYP-  143 (176)
Q Consensus        80 ~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-  143 (176)
                      +++|     .+++.            .++.+|+|++|++++.+|+..|+.. +...     .++..+...   ....|. 
T Consensus        81 ~i~~-----g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~~-e~i~-----~r~~~y~~~~~~v~~~y~~  149 (179)
T d1e4va1          81 FLLD-----GFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQE-ETVR-----KRLVEYHQMTAPLIGYYSK  149 (179)
T ss_dssp             EEEE-----SCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCSH-HHHH-----HHHHHHHHHTTHHHHHHHH
T ss_pred             eeec-----ccccchHHhhhhhhccCCceEEEEeccchhhhhhhhcccccH-HHHH-----HHHHHHHHHHHHHHHHHHH
Confidence            8888     44442            3788999999999999999877531 1111     122222111   111121 


Q ss_pred             -----CCcEEEecCC-CHHHHHHHHHHHH
Q 030477          144 -----EDIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       144 -----~~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                           ...++.+|+. ++++|.+.|..++
T Consensus       150 ~~~~~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         150 EAEAGNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             HHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             hccccCCcEEEEECCCCHHHHHHHHHHHh
Confidence                 2356677765 8999998888765

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=1.2e-20  Score=128.96  Aligned_cols=150  Identities=15%  Similarity=0.184  Sum_probs=89.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCch---hhh-cccccchHHHHHHHHHHhhcCCeEEcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWD---DEL-ECHVINEDLVCDELEDIMEQGGNIVDYH   85 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~l~~~i~~~~~~~~~vid~~   85 (176)
                      |.|+|+|+|||||||+++.||+++|++|+|.|+++..... ....   ... ...+.  +.-.+.+.........++...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g-~~i~~~~~~~g~~~~r--~~e~~~~~~~~~~~~~vi~~g   78 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFR--RIEEDVVRAALADHDGVLSLG   78 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHH--HHHHHHHHHHHHHCCSEEECC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhh-hhhhhhhhhhhHHHHH--HHHhhhhhhcccccccccccc
Confidence            4577889999999999999999999999999998765421 1111   110 11111  111122222333333333211


Q ss_pred             CCCCCCCC-----cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHHHH
Q 030477           86 GCDFFPER-----WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIEDI  158 (176)
Q Consensus        86 ~~~~~~~~-----~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~ev  158 (176)
                      ....+...     ....+|||.++++++.+|+..+. .++........+.+..++.++.+.|.+  +.+|++++.+++++
T Consensus        79 g~~~~~~~~~~~l~~~~~I~L~~~~~~~~~R~~~~~-~Rpll~~~~~~e~~~~l~~eR~~~Y~~~ad~~Idt~~~s~~ei  157 (165)
T d2iyva1          79 GGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAV  157 (165)
T ss_dssp             TTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHHHH
T ss_pred             ccccccccccccccccceeeeeccchhhhhcccccc-cchhccCccHHHHHHHHHHHHHHHHHhhCCEEEECCCCCHHHH
Confidence            11011110     12458999999999999997543 334333222234566677777666664  57888888899988


Q ss_pred             HHHHH
Q 030477          159 TRNIA  163 (176)
Q Consensus       159 ~~~i~  163 (176)
                      .+.|.
T Consensus       158 ~~~Ii  162 (165)
T d2iyva1         158 VRHIL  162 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.3e-20  Score=127.41  Aligned_cols=155  Identities=20%  Similarity=0.367  Sum_probs=97.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC--CCchhhhccc-----ccchHHHHHHHH----HH---
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH--DGWDDELECH-----VINEDLVCDELE----DI---   74 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~l~~~i~----~~---   74 (176)
                      |++|+|.|||||||||+|+.|++++|+.+++.+++++.....  ..........     ......+...+.    ..   
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            578999999999999999999999999999999999875322  2222211111     111222222222    21   


Q ss_pred             -hhcCCeEEcCCCCCCCCCC---------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhH--HHHHHHHHH
Q 030477           75 -MEQGGNIVDYHGCDFFPER---------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIE--CEIFQVLLE  136 (176)
Q Consensus        75 -~~~~~~vid~~~~~~~~~~---------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~--~~~~~~~~~  136 (176)
                       ....+++++     .+++.               ..+.+++++++.+++.+|..+|+....+..+..+  ..++..+.+
T Consensus        81 ~~~~~~~~~~-----g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~  155 (194)
T d1teva_          81 NAQKNKFLID-----GFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQ  155 (194)
T ss_dssp             CTTCCEEEEE-----SCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHH
T ss_pred             hhcccceeec-----cchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHH
Confidence             124678888     44442               2467899999999999999988654333333221  223333333


Q ss_pred             HH---HhcCCC-CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477          137 EA---KESYPE-DIVLALKSD-TIEDITRNIAILTDW  168 (176)
Q Consensus       137 ~~---~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~  168 (176)
                      ..   ...|.. +.++.+|+. ++++|.+.|..+++.
T Consensus       156 ~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         156 STKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            32   223443 445556654 899999999988763

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.81  E-value=4.2e-20  Score=129.37  Aligned_cols=159  Identities=20%  Similarity=0.341  Sum_probs=103.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-Cchhhhcc-----cccchHHHHHHHHHHh----
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-GWDDELEC-----HVINEDLVCDELEDIM----   75 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~l~~~i~~~~----   75 (176)
                      +.++++|+|.|||||||||+|+.|++++|+++++.+++++...... ..+.....     .....+.+...+...+    
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKV   84 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcc
Confidence            5688999999999999999999999999999999999988753211 11111111     1122344444444322    


Q ss_pred             -hcCCeEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCCcccc--chhHHHHHHHHHHHH--
Q 030477           76 -EQGGNIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLT--NNIECEIFQVLLEEA--  138 (176)
Q Consensus        76 -~~~~~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~--  138 (176)
                       ...++++|     ++|+.            .+..++++.++++++.+|...+.....+..  .+.-..++..+.+..  
T Consensus        85 ~~~~g~ild-----g~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~  159 (194)
T d3adka_          85 DTSKGFLID-----GYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEP  159 (194)
T ss_dssp             TTCSCEEEE-----SCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHH
T ss_pred             cccccceee-----eccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHH
Confidence             23578999     66653            356799999999999999765532111111  122223455554443  


Q ss_pred             -HhcCCC-CcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          139 -KESYPE-DIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       139 -~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                       ...|.. +.++.+|+. ++++|.+.|...++.+
T Consensus       160 ~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~~l  193 (194)
T d3adka_         160 VIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDTL  193 (194)
T ss_dssp             HHHHHTTTTCEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence             345766 456666665 8999999988887643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.8e-19  Score=125.22  Aligned_cols=157  Identities=19%  Similarity=0.354  Sum_probs=96.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC--CCchhhhccc-----ccchHHHHHHH----HHH-
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH--DGWDDELECH-----VINEDLVCDEL----EDI-   74 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~l~~~i----~~~-   74 (176)
                      .+.++|+|.|||||||||+|+.|++++|+.+++.+++++.....  ..++.....+     ......+...+    ... 
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNV   85 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhh
Confidence            46789999999999999999999999999999999998764321  2222221111     11112222222    221 


Q ss_pred             h-hcCCeEEcCCCCCCCCCC------------cccEEEEEeCChHHHHHHHhhcCCCCccccc--hhHHHHHHHHHHHH-
Q 030477           75 M-EQGGNIVDYHGCDFFPER------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTN--NIECEIFQVLLEEA-  138 (176)
Q Consensus        75 ~-~~~~~vid~~~~~~~~~~------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~--~~~~~~~~~~~~~~-  138 (176)
                      . ...++++|     .+++.            .++.+++|+++++++.+|+..|+....+...  +.-..++..+.+.. 
T Consensus        86 ~~~~~~~vl~-----g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~  160 (196)
T d1ukza_          86 KANKHKFLID-----GFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSM  160 (196)
T ss_dssp             HTTCCEEEEE-----TCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTH
T ss_pred             ccCCCceeee-----ccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHH
Confidence            1 23578888     34432            3678999999999999998766431111111  11122333333322 


Q ss_pred             --HhcCCC-CcEEEecCC-CHHHHHHHHHHHHHH
Q 030477          139 --KESYPE-DIVLALKSD-TIEDITRNIAILTDW  168 (176)
Q Consensus       139 --~~~~~~-~~~i~~~~~-s~~ev~~~i~~~~~~  168 (176)
                        .+.|.. +.++.+|+. ++++|.+.|..+++.
T Consensus       161 ~l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~  194 (196)
T d1ukza_         161 PVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD  194 (196)
T ss_dssp             HHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence              223444 456667665 899999999888864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=1.2e-18  Score=120.43  Aligned_cols=149  Identities=24%  Similarity=0.368  Sum_probs=97.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhc-----ccccchHHHHHHHHHHh----hcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELE-----CHVINEDLVCDELEDIM----EQGG   79 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~l~~~i~~~~----~~~~   79 (176)
                      +.|+|.|||||||||+|+.|++++|+.+++.+++++..... ...+....     ......+...+.+...+    ...+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            46899999999999999999999999999999988764322 11111111     11223344555555433    3357


Q ss_pred             eEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH---Hh
Q 030477           80 NIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA---KE  140 (176)
Q Consensus        80 ~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~  140 (176)
                      +++|     .++..                .++++++|+++++++.+|+..|++.....  +.-..++..+.+..   .+
T Consensus        81 ~i~d-----~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~~--~~i~~rl~~y~~~~~~l~~  153 (181)
T d2cdna1          81 FILD-----GYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTD--DVILNRMKVYRDETAPLLE  153 (181)
T ss_dssp             EEEE-----SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSH--HHHHHHHHHHHHHTTTHHH
T ss_pred             EEec-----ccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccchh--HHHHHHHHHHHHHHHHHHH
Confidence            8888     44442                35789999999999999999887532211  22223444444432   34


Q ss_pred             cCCCCcEEEecCC-CHHHHHHHHHHHH
Q 030477          141 SYPEDIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       141 ~~~~~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                      .|.. .++.+|+. ++++|.+.|.+++
T Consensus       154 ~y~~-~~~~Id~~~s~eeV~~~I~~~l  179 (181)
T d2cdna1         154 YYRD-QLKTVDAVGTMDEVFARALRAL  179 (181)
T ss_dssp             HTTT-TEEEEECCSCHHHHHHHHHHHT
T ss_pred             HHhc-CeEEEECCCCHHHHHHHHHHHh
Confidence            4655 45566654 8999999887765

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.80  E-value=8.4e-20  Score=125.28  Aligned_cols=146  Identities=18%  Similarity=0.181  Sum_probs=86.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhccccc--chHHHH----HHHHHHhhcCCeEEc
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVI--NEDLVC----DELEDIMEQGGNIVD   83 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~----~~i~~~~~~~~~vid   83 (176)
                      +.|+|+|+|||||||+|+.||+++|++|+|.|+++..... ....+    ++.  .+..+.    +.+........++..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~g-~~i~e----i~~~~g~~~~~~~~~~~l~~~~~~~~~~~~   77 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVAD----VVAAEGWPGFRRRESEALQAVATPNRVVAT   77 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHH----HHHHHHHHHHHHHHHHHHHHHCCSSEEEEC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhhh-hhhhh----hhcccchHHHHHHHHHHHHhhccccceecc
Confidence            3477889999999999999999999999999998765421 11111    110  011111    112222233333333


Q ss_pred             CCCC-------CCCCCCcccEEEEEeCChHHHHHHHhhcCCCC--ccccchhHHHHHHHHHHHHHhcCCC--CcEEEecC
Q 030477           84 YHGC-------DFFPERWFDRVVVLQTENSVLYDRLTKRGYTG--AKLTNNIECEIFQVLLEEAKESYPE--DIVLALKS  152 (176)
Q Consensus        84 ~~~~-------~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~  152 (176)
                      ....       ..+.  ....+|||++|++++.+|+..+....  +........+.+...+.++.+.|..  +.+++++ 
T Consensus        78 ~~~~~~~~~~~~~l~--~~~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~~~a~~~Id~~-  154 (170)
T d1e6ca_          78 GGGMVLLEQNRQFMR--AHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDAT-  154 (170)
T ss_dssp             CTTGGGSHHHHHHHH--HHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETT-
T ss_pred             cccchhhhHHHHhhh--ccceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCEEEcCC-
Confidence            2211       1111  13468999999999999997664432  2222233345566677777777654  4556554 


Q ss_pred             CCHHHHHHHHH
Q 030477          153 DTIEDITRNIA  163 (176)
Q Consensus       153 ~s~~ev~~~i~  163 (176)
                      .+++++.+.|.
T Consensus       155 ~~~~eiv~~Ii  165 (170)
T d1e6ca_         155 QPPAAIVCELM  165 (170)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            47877655544

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.9e-19  Score=119.91  Aligned_cols=153  Identities=16%  Similarity=0.164  Sum_probs=85.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc-----CCCchhhhcccccchHHHHHHHHHHhhc-CCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL-----HDGWDDELECHVINEDLVCDELEDIMEQ-GGN   80 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~   80 (176)
                      .++++|+|+|+|||||||+|+.|++++|+++++.+++......     ...+.....  ......+...+...... ..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   81 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDR--KPWLQALNDAAFAMQRTNKVS   81 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHH--HHHHHHHHHHHHHHHHHCSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhccCcceehhhh--HHHHHHHHHHHHHHHhccCce
Confidence            4678999999999999999999999999999998876433211     111111000  00011222223333333 344


Q ss_pred             EEcCCCC-----CCCCC-CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcC-CCCcEEEecCC
Q 030477           81 IVDYHGC-----DFFPE-RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESY-PEDIVLALKSD  153 (176)
Q Consensus        81 vid~~~~-----~~~~~-~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~  153 (176)
                      +++....     ..+.. .....+|||++|++++.+|+.+|......      .+.++...+..++++ .+..++.+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~~------~~~~~~~~~~~e~~~~~e~~~~~id~~  155 (171)
T d1knqa_          82 LIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFK------TQMLVTQFETLQEPGADETDVLVVDID  155 (171)
T ss_dssp             EEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCC------HHHHHHHHHHCCCCCTTCTTEEEEECS
T ss_pred             EeeccchHHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCCCcc------HHHHHhhHHHhhCCCcccCCEEEEeCC
Confidence            4443211     00000 12346899999999999999988642211      122333344333333 33334445544


Q ss_pred             -CHHHHHHHHHHHHH
Q 030477          154 -TIEDITRNIAILTD  167 (176)
Q Consensus       154 -s~~ev~~~i~~~~~  167 (176)
                       +++++.+.|...++
T Consensus       156 ~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         156 QPLEGVVASTIEVIK  170 (171)
T ss_dssp             SCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhc
Confidence             88888777766654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=3.1e-19  Score=123.50  Aligned_cols=143  Identities=18%  Similarity=0.312  Sum_probs=88.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhccc-----ccchHHHHHHH----HH-HhhcC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELECH-----VINEDLVCDEL----ED-IMEQG   78 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~l~~~i----~~-~~~~~   78 (176)
                      +.|+|.|||||||||+|+.|++++|+++++.+++++..... ..++......     ..........+    .. .....
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKN   82 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccC
Confidence            45788899999999999999999999999999998764322 1222221111     11122222222    22 23446


Q ss_pred             CeEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHH---HHH
Q 030477           79 GNIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLE---EAK  139 (176)
Q Consensus        79 ~~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~---~~~  139 (176)
                      ++++|     .++..                .++.+|+|+++++++.+|+..+..    .     ..++..+..   ...
T Consensus        83 g~i~d-----g~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~~----~-----~~r~~~y~~~~~~v~  148 (180)
T d1akya1          83 GFILD-----GFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADA----L-----KKRLAAYHAQTEPIV  148 (180)
T ss_dssp             CEEEE-----SCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHHH----H-----HHHHHHHHHHTTHHH
T ss_pred             CEecc-----CccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccccc----c-----cchHHHHHHHHHHHH
Confidence            88998     34432                367899999999999999875531    1     011111111   122


Q ss_pred             hcCCC-CcEEEecCC-CHHHHHHHHHHHH
Q 030477          140 ESYPE-DIVLALKSD-TIEDITRNIAILT  166 (176)
Q Consensus       140 ~~~~~-~~~i~~~~~-s~~ev~~~i~~~~  166 (176)
                      +.|.+ +.++.+|+. ++++|.+.|...+
T Consensus       149 ~~y~~~~~~~~Id~~~~~eeV~~~I~~~l  177 (180)
T d1akya1         149 DFYKKTGIWAGVDASQPPATVWADILNKL  177 (180)
T ss_dssp             HHHHHHTCEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEECCCCHHHHHHHHHHHH
Confidence            33433 456667655 8999998887765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.78  E-value=1.8e-18  Score=118.03  Aligned_cols=152  Identities=17%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCC-Cchhhhccccc-chHHHHHHHHHHh-hcCCeEEcCCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHD-GWDDELECHVI-NEDLVCDELEDIM-EQGGNIVDYHG   86 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~i~~~~-~~~~~vid~~~   86 (176)
                      ++|+|+|||||||||+|+.|+++++..++...+.++...... ........... ....+.......+ .+.++++|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~   82 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYIA   82 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            589999999999999999999999887665555555432211 11111110000 1122333333333 34556776432


Q ss_pred             CCCCCC-----------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh-cCCCCcEEEecCCC
Q 030477           87 CDFFPE-----------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE-SYPEDIVLALKSDT  154 (176)
Q Consensus        87 ~~~~~~-----------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s  154 (176)
                      .....+           .....++||.+|++++.+|+..|+...+......  +.+.    +..+ ......++++++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~--~~~~----~~~~~~~~~~~~id~~~~~  156 (176)
T d2bdta1          83 FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCL--ELVE----EFESKGIDERYFYNTSHLQ  156 (176)
T ss_dssp             CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGG--HHHH----HHHHTTCCTTSEEECSSSC
T ss_pred             ccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhHHHH--HHHH----HHHhCCCCCeEEEECCCCC
Confidence            111000           1233579999999999999999876444332222  2222    2222 23335778888789


Q ss_pred             HHHHHHHHHHHHH
Q 030477          155 IEDITRNIAILTD  167 (176)
Q Consensus       155 ~~ev~~~i~~~~~  167 (176)
                      ++++.+.|..+++
T Consensus       157 ~~~~~~~I~~i~~  169 (176)
T d2bdta1         157 PTNLNDIVKNLKT  169 (176)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.78  E-value=2e-18  Score=119.24  Aligned_cols=149  Identities=20%  Similarity=0.358  Sum_probs=94.6

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhcc-----cccchHHHHHHHHHH----hhcCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELEC-----HVINEDLVCDELEDI----MEQGGN   80 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~l~~~i~~~----~~~~~~   80 (176)
                      .|+|.|||||||||+|+.||+++|+++++.+++++..... ...+.....     -..........+...    ....++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGF   81 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcCc
Confidence            5899999999999999999999999999999998764221 111111111     111222333333322    233678


Q ss_pred             EEcCCCCCCCCC----------------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHH---hc
Q 030477           81 IVDYHGCDFFPE----------------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAK---ES  141 (176)
Q Consensus        81 vid~~~~~~~~~----------------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~  141 (176)
                      +++.     ++.                ..++.+++|+++.+.+.+|+..++..      ..-..+++.+.+...   +.
T Consensus        82 v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~~------e~~~~Rl~~y~~~~~~l~~~  150 (182)
T d1zina1          82 LLDG-----FPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDNE------ATVANRLEVNMKQMKPLVDF  150 (182)
T ss_dssp             EEES-----CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSH------HHHHHHHHHHHHHHTHHHHH
T ss_pred             cccc-----ccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccch------HHHHHHHHHHHHHHHHHHHH
Confidence            8773     222                13568999999999999999876521      111223444333322   23


Q ss_pred             CCC-CcEEEecCC-CHHHHHHHHHHHHHHHH
Q 030477          142 YPE-DIVLALKSD-TIEDITRNIAILTDWVR  170 (176)
Q Consensus       142 ~~~-~~~i~~~~~-s~~ev~~~i~~~~~~~~  170 (176)
                      |.+ +.++.+|+. ++++|.+.|..+++-+.
T Consensus       151 y~~~~~~~~Id~~~~~eeV~~~I~~~L~~l~  181 (182)
T d1zina1         151 YEQKGYLRNINGEQDMEKVFADIRELLGGLA  181 (182)
T ss_dssp             HHHHTCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEECCCCHHHHHHHHHHHHHhcc
Confidence            443 456666665 89999999999987654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.77  E-value=2.1e-18  Score=119.35  Aligned_cols=147  Identities=19%  Similarity=0.378  Sum_probs=93.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC-CCchhhhc----cc-ccchHHHHHHHHHHh----hcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH-DGWDDELE----CH-VINEDLVCDELEDIM----EQGG   79 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~-~~~~~~~~----~~-~~~~~~l~~~i~~~~----~~~~   79 (176)
                      +.|+|.|||||||||+|+.||+++|+++++.+++++..... .+.+....    .. ..........+...+    ...+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~   80 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccc
Confidence            36899999999999999999999999999999998765321 11221111    11 122233333333322    3467


Q ss_pred             eEEcCCCCCCCCCC----------------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHH---HHh
Q 030477           80 NIVDYHGCDFFPER----------------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEE---AKE  140 (176)
Q Consensus        80 ~vid~~~~~~~~~~----------------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~  140 (176)
                      +++|     .+|+.                ....+++++++.+.+.+|+..++.  +.   .. ..++..+.+.   ...
T Consensus        81 ~vl~-----g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~~--~e---~i-~~R~~~y~~~~~~i~~  149 (182)
T d1s3ga1          81 FLLD-----GFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADDN--PD---TV-TNRLEVNMNQTAPLLA  149 (182)
T ss_dssp             EEEE-----SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCS--HH---HH-HHHHHHHHHHHHHHHH
T ss_pred             eeee-----ccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhccch--hH---HH-HHHHHHHHHHHHHHHH
Confidence            8888     55542                235678999999999999875432  11   11 1233333333   233


Q ss_pred             cCCC-CcEEEecCC-CHHHHHHHHHHHHH
Q 030477          141 SYPE-DIVLALKSD-TIEDITRNIAILTD  167 (176)
Q Consensus       141 ~~~~-~~~i~~~~~-s~~ev~~~i~~~~~  167 (176)
                      .|.. +.++.+|+. ++++|.+.|..+++
T Consensus       150 ~y~~~~~~~~Id~~~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         150 FYDSKEVLVNINGQKDIKDVFKDLDVILQ  178 (182)
T ss_dssp             HHHTTTCEEEEECSSCHHHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            4554 566777765 89999999988874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=4e-19  Score=120.29  Aligned_cols=157  Identities=16%  Similarity=0.112  Sum_probs=80.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHH-hhcCCeEEcCCCCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDI-MEQGGNIVDYHGCD   88 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~vid~~~~~   88 (176)
                      +.|+|+|||||||||+|+.||++||+++++.+.........................+....... ......+.......
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGS   82 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTTG
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccchh
Confidence            57999999999999999999999999999988876554222111000000000001111111111 12223333211111


Q ss_pred             CCCC------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC--CcEEEecCCCHHHHHH
Q 030477           89 FFPE------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE--DIVLALKSDTIEDITR  160 (176)
Q Consensus        89 ~~~~------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~ev~~  160 (176)
                      ....      ......+++.+++.++..|+..+...............+......+.+.|.+  +.+|++++.+++++.+
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~d~~Idt~~~s~ee~v~  162 (169)
T d1kaga_          83 VKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVAN  162 (169)
T ss_dssp             GGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC-----CHHHHHH
T ss_pred             hhhhhhhHHhhhcceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhhccCCEEEECCCCCHHHHHH
Confidence            1111      0134688899999999998876554322222222233444444444444443  4667776678998888


Q ss_pred             HHHHHH
Q 030477          161 NIAILT  166 (176)
Q Consensus       161 ~i~~~~  166 (176)
                      .|.+.+
T Consensus       163 ~Ii~~l  168 (169)
T d1kaga_         163 QIIHML  168 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            877665

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.76  E-value=2.6e-18  Score=117.70  Aligned_cols=155  Identities=16%  Similarity=0.106  Sum_probs=87.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh--hHHHhhcccC--CCchhhhc-ccccchHHHHHHHHHHhh-cCCeE
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI--GELVREKNLH--DGWDDELE-CHVINEDLVCDELEDIME-QGGNI   81 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~--~~~~~~~~~~--~~~~~~~~-~~~~~~~~l~~~i~~~~~-~~~~v   81 (176)
                      .+++|+|+|||||||||+|+.|++++|.++++.  |++.......  ..+..... ............+..... ...++
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVI   82 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCCCeE
Confidence            567999999999999999999999999887654  4443322111  01100000 000011222233333333 34566


Q ss_pred             EcCCCCCCCC-----CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC-CcEEEecCCCH
Q 030477           82 VDYHGCDFFP-----ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE-DIVLALKSDTI  155 (176)
Q Consensus        82 id~~~~~~~~-----~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~  155 (176)
                      ++........     ......++||.|+++++.+|+.+|+......  .   +....+.+........ ..+|++++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~idt~~~~~  157 (176)
T d1zp6a1          83 LDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSD--P---LVVADLHSQFADLGAFEHHVLPVSGKDT  157 (176)
T ss_dssp             ECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCC--H---HHHHHHHHHTTCCGGGGGGEEECTTCCT
T ss_pred             ecccccHHHHHHHHhcccccccccCCCCHHHHHHHHHhCCCccccc--h---hhHHHHHHHHhhcccccCEEEECCCCCH
Confidence            6643221111     1124467999999999999999887532221  1   1223333332222222 57788888889


Q ss_pred             HHHHHHHHHHHH
Q 030477          156 EDITRNIAILTD  167 (176)
Q Consensus       156 ~ev~~~i~~~~~  167 (176)
                      +++.+.|...++
T Consensus       158 ee~~~~I~~~l~  169 (176)
T d1zp6a1         158 DQALQSAINALQ  169 (176)
T ss_dssp             TTTTTTTHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888777776664

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.73  E-value=8.5e-17  Score=110.83  Aligned_cols=158  Identities=15%  Similarity=0.220  Sum_probs=83.7

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCC---Cchhhhcccccch-----HHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHD---GWDDELECHVINE-----DLVCDELEDIM   75 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~l~~~i~~~~   75 (176)
                      .++|+|+|+|||||||+++.|+++|+     ...++.++..+......   .............     ......+....
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA   80 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHh
Confidence            47899999999999999999999873     44566666654432111   1111111111100     11222333333


Q ss_pred             hcCCeEEcCCCCC-----CCCC--------CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHh--
Q 030477           76 EQGGNIVDYHGCD-----FFPE--------RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKE--  140 (176)
Q Consensus        76 ~~~~~vid~~~~~-----~~~~--------~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--  140 (176)
                      ....+++|.+...     .+..        ..++.++||+++++++.+|+.+|.............+.+.........  
T Consensus        81 ~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (190)
T d1khta_          81 KESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSY  160 (190)
T ss_dssp             TTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHH
Confidence            4455666643211     0100        146789999999999999988765432222222222223333222222  


Q ss_pred             -cCCCCc--EEEecCCCHHHHHHHHHHHH
Q 030477          141 -SYPEDI--VLALKSDTIEDITRNIAILT  166 (176)
Q Consensus       141 -~~~~~~--~i~~~~~s~~ev~~~i~~~~  166 (176)
                       .+....  +++..+.+++++.+.+..++
T Consensus       161 ~~~~~~~~~~v~~~~~~~ee~~~ei~~~l  189 (190)
T d1khta_         161 GVLTGATVKIVQNRNGLLDQAVEELTNVL  189 (190)
T ss_dssp             HHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHhhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence             222222  23333348888877776654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.72  E-value=3.9e-17  Score=111.65  Aligned_cols=149  Identities=15%  Similarity=0.050  Sum_probs=80.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh--hHHHhhccc---CCCchhhh--cccccch---HHHHHH----HHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI--GELVREKNL---HDGWDDEL--ECHVINE---DLVCDE----LED   73 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~--~~~~~~~~~---~~~~~~~~--~~~~~~~---~~l~~~----i~~   73 (176)
                      ..++|+|+|+|||||||+|+.|++.+|.++++.  |.+......   ........  ...+...   ..+...    +..
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999999999999876543  333322110   00100000  0011110   111112    222


Q ss_pred             Hhhc-CCeEEcCCCCCCCC---------CCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC
Q 030477           74 IMEQ-GGNIVDYHGCDFFP---------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP  143 (176)
Q Consensus        74 ~~~~-~~~vid~~~~~~~~---------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (176)
                      .... ..++++........         ......+|+|.||++++.+|+..|+...+...        ............
T Consensus        82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~--------~~~~~~~~~~~~  153 (178)
T d1qhxa_          82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAGMA--------AKQAYVVHEGVE  153 (178)
T ss_dssp             HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCTTHH--------HHHTTGGGTTCC
T ss_pred             HHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCCcchhhh--------hhhhhhhhcCCC
Confidence            2222 34455432211110         01234579999999999999998864322111        011111112222


Q ss_pred             CCcEEEecCCCHHHHHHHHHH
Q 030477          144 EDIVLALKSDTIEDITRNIAI  164 (176)
Q Consensus       144 ~~~~i~~~~~s~~ev~~~i~~  164 (176)
                      .+.+|+++..+++|+.+.|..
T Consensus       154 ~dl~IDts~~s~ee~a~~I~~  174 (178)
T d1qhxa_         154 YDVEVDTTHKESIECAWAIAA  174 (178)
T ss_dssp             CSEEEETTSSCHHHHHHHHHT
T ss_pred             CCEEEECCCCCHHHHHHHHHH
Confidence            367888888899998887764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.69  E-value=6.9e-16  Score=109.47  Aligned_cols=40  Identities=20%  Similarity=0.395  Sum_probs=36.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK   47 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~   47 (176)
                      |..+|.|.|||||||||+|+.||++||++|+++++++|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~   41 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   41 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            5577889999999999999999999999999999998863

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.6e-15  Score=105.84  Aligned_cols=160  Identities=18%  Similarity=0.185  Sum_probs=84.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCeEe---------ehhHHHhhcccCCC------chhhhccccc---chHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLRHI---------NIGELVREKNLHDG------WDDELECHVI---NEDL   66 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~---------~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~   66 (176)
                      ++++|+|.|++||||||+++.|++.|   |+..+         ..++.++.......      +........+   ....
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL   80 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            56899999999999999999999876   44322         11222222211111      0000000001   1112


Q ss_pred             HHHHHHHHhhcCCeEE-cCCC---------CCCCC-------------CCcccEEEEEeCChHHHHHHHhhcCCCCcccc
Q 030477           67 VCDELEDIMEQGGNIV-DYHG---------CDFFP-------------ERWFDRVVVLQTENSVLYDRLTKRGYTGAKLT  123 (176)
Q Consensus        67 l~~~i~~~~~~~~~vi-d~~~---------~~~~~-------------~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~  123 (176)
                      +...+...+..+.+|+ |...         ...+.             ...+|++|||++|++++.+|+.+|+.......
T Consensus        81 ~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~~~~~~  160 (210)
T d4tmka_          81 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQ  160 (210)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTT
T ss_pred             HHHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccccchhhh
Confidence            2222333344454444 5210         00111             11479999999999999999999875322111


Q ss_pred             chh-HHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHH
Q 030477          124 NNI-ECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWV  169 (176)
Q Consensus       124 ~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~  169 (176)
                      +.. ........+.......  ..++.+|++ ++++|.+.|..+++.+
T Consensus       161 ~~~~~~~~v~~~y~~~~~~~--~~~~~IDa~~~~e~v~~~I~~~i~~~  206 (210)
T d4tmka_         161 ESFDFFNRTRARYLELAAQD--KSIHTIDATQPLEAVMDAIRTTVTHW  206 (210)
T ss_dssp             SCHHHHHHHHHHHHHHHHTC--TTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhcC--CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            122 1122222232222222  234555554 8999999998888654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.8e-15  Score=105.01  Aligned_cols=159  Identities=18%  Similarity=0.093  Sum_probs=82.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCeEeehh---------HHHhhccc-CCCchhhhcccccc--hHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLRHINIG---------ELVREKNL-HDGWDDELECHVIN--EDLVCDEL   71 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~--~~~l~~~i   71 (176)
                      .++.+|+|.|++||||||+++.|++.|   |..++...         ..++.... ...........++.  .......+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i   80 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   80 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhH
Confidence            367899999999999999999999987   56554321         11111100 00111111111110  01112333


Q ss_pred             HHHhhcC-CeEEcCCC---------------------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHH
Q 030477           72 EDIMEQG-GNIVDYHG---------------------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE  129 (176)
Q Consensus        72 ~~~~~~~-~~vid~~~---------------------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~  129 (176)
                      ...+..+ .+|+|...                     ...++  .||++|||++|++++.+|...++.   ..+.....+
T Consensus        81 ~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~--~PDl~i~Ld~~~e~~~~R~~~~~~---~~E~~~~~~  155 (209)
T d1nn5a_          81 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLP--KPDLVLFLQLQLADAAKRGAFGHE---RYENGAFQE  155 (209)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSB--CCSEEEEEECCHHHHHHC-----C---TTCSHHHHH
T ss_pred             HHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCC--CCceeeeecccHHHHhhhhccccc---ccccHHHHH
Confidence            3333333 45556310                     11122  389999999999999999765442   222222222


Q ss_pred             HHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHHHHHHHHHHh
Q 030477          130 IFQVLLEEAKESYPEDIVLALKSD-TIEDITRNIAILTDWVRN  171 (176)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i~~~~~~~~~  171 (176)
                      .....+.+....+. ..++.+|+. ++++|.+.|..+++.+..
T Consensus       156 r~~~~Y~~l~~~~~-~~~~~IDa~~~~e~V~~~I~~~v~~~l~  197 (209)
T d1nn5a_         156 RALRCFHQLMKDTT-LNWKMVDASKSIEAVHEDIRVLSEDAIA  197 (209)
T ss_dssp             HHHHHHHHHTTCTT-SCEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence            23333333322222 235556554 899999999999876643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.63  E-value=4.1e-15  Score=102.57  Aligned_cols=158  Identities=15%  Similarity=0.128  Sum_probs=78.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHhhcccCC---CchhhhcccccchH-----HHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVREKNLHD---GWDDELECHVINED-----LVCDELEDIM   75 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~l~~~i~~~~   75 (176)
                      |++|+|+|+|||||||+++.|++.|+     +.+++.++.........   ..............     .....+....
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEA   80 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhhccccchhhcccCHHHHHHHHHHHH
Confidence            57899999999999999999999884     33456565543321111   11111111111111     1111112111


Q ss_pred             ---hcCCeEEcCCCC--------CCCCC-----CcccEEEEEeCChHHHHHHHhhcCCCC-ccccchhHHHHHHHHHHH-
Q 030477           76 ---EQGGNIVDYHGC--------DFFPE-----RWFDRVVVLQTENSVLYDRLTKRGYTG-AKLTNNIECEIFQVLLEE-  137 (176)
Q Consensus        76 ---~~~~~vid~~~~--------~~~~~-----~~~~~vi~l~~~~~~~~~R~~~r~~~~-~~~~~~~~~~~~~~~~~~-  137 (176)
                         ....++++....        ..+..     ..++.++||++|++++.+|+.+|.... ...........+..+.+. 
T Consensus        81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~~~~~~~~  160 (194)
T d1nksa_          81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYA  160 (194)
T ss_dssp             HHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHH
T ss_pred             HHhCCCcEEEEccCchHHHHHHHHhHHHHHHhhhccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHhH
Confidence               123344442210        01111     146789999999999999998765422 121111111112222211 


Q ss_pred             --HHhc-CCCC-cEEEecCCCHHHHHHHHHHHH
Q 030477          138 --AKES-YPED-IVLALKSDTIEDITRNIAILT  166 (176)
Q Consensus       138 --~~~~-~~~~-~~i~~~~~s~~ev~~~i~~~~  166 (176)
                        .... .... .+|+.+..+++++.+.|.+.+
T Consensus       161 ~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         161 ATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence              1111 2222 344444458998888877655

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.3e-15  Score=106.05  Aligned_cols=155  Identities=15%  Similarity=0.187  Sum_probs=85.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCC---------chhh------------hcccccc-hH--
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDG---------WDDE------------LECHVIN-ED--   65 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~---------~~~~------------~~~~~~~-~~--   65 (176)
                      .+|.|||++||||||+++.|. ++|++++++|.+.+.......         ++..            ....++. ..  
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            388899999999999999995 689999999999876521110         0100            0000110 00  


Q ss_pred             ---------HHHHHHHHHh--hc-CCeEEcCCCCCCCCC---CcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHH
Q 030477           66 ---------LVCDELEDIM--EQ-GGNIVDYHGCDFFPE---RWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEI  130 (176)
Q Consensus        66 ---------~l~~~i~~~~--~~-~~~vid~~~~~~~~~---~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~  130 (176)
                               .+.+.+....  .. ..++++...  ++..   ..++.+|++.||++++.+|+.+|+.-...   .. ..+
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~~l--l~e~~~~~~~~~iI~V~a~~e~r~~R~~~R~~~~~~---~~-~~~  156 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQATSPYVLWVVPL--LVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTRE---HV-EQI  156 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTT--TTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHH---HH-HHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcCCcceeeee--cccccccccCCEEEEEeCCHHHHHHHHHHhhhhhHH---HH-HHH
Confidence                     1111222211  11 223444322  2211   23678999999999999999988531111   11 112


Q ss_pred             HHHHHHHH-HhcCCCCcEEEecCCCHHHHHHHHHHHHHHHHhhc
Q 030477          131 FQVLLEEA-KESYPEDIVLALKSDTIEDITRNIAILTDWVRNWQ  173 (176)
Q Consensus       131 ~~~~~~~~-~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~~~~~  173 (176)
                      ...+.... ...++ +.+| .|+++.+++...+.++.+.+..+.
T Consensus       157 ~~~Q~~~~~k~~~a-D~vI-~N~~~le~l~~~v~~l~~~~l~~~  198 (208)
T d1vhta_         157 LAAQATREARLAVA-DDVI-DNNGAPDAIASDVARLHAHYLQLA  198 (208)
T ss_dssp             HHHSCCHHHHHHHC-SEEE-ECSSCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHhC-CEEE-ECCCCHHHHHHHHHHHHHHHHHHH
Confidence            22111111 11111 3444 455588889999988887776543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1e-15  Score=104.77  Aligned_cols=93  Identities=15%  Similarity=0.077  Sum_probs=67.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHh-hcCCeEEcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIM-EQGGNIVDYH   85 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~vid~~   85 (176)
                      +++.+|+++|+|||||||+|+.|++.+|+.+++.|++...                  ..+.+.++..+ .+..+|+|.+
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------~~~~~~~~~~l~~g~~vIiD~t   73 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------QRCVSSCQAALRQGKRVVIDNT   73 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------HHHHHHHHHHHHTTCCEEEESC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------HHHHHHHHHHHHCCCCceeeCc
Confidence            5788999999999999999999999999999998875321                  22344444444 4567888865


Q ss_pred             CCCCCCC----------CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           86 GCDFFPE----------RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        86 ~~~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      ....-.+          ...-.+|++++|.+++.+|+..|..
T Consensus        74 ~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~  115 (172)
T d1yj5a2          74 NPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM  115 (172)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcc
Confidence            4221111          0122578999999999999988853

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=7.8e-16  Score=106.93  Aligned_cols=155  Identities=15%  Similarity=0.113  Sum_probs=82.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccC--CCch--------------hhhccccc-chH-----
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLH--DGWD--------------DELECHVI-NED-----   65 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~--~~~~--------------~~~~~~~~-~~~-----   65 (176)
                      .|.+|.|+|++||||||+|+.| +++|++++++|.+.+.....  ..+.              ......++ +..     
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            4678889999999999999999 55899999998876653100  0000              00111111 110     


Q ss_pred             ------HHHHHHHHHh--hc-CCeEEcCCCC-CCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHH
Q 030477           66 ------LVCDELEDIM--EQ-GGNIVDYHGC-DFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLL  135 (176)
Q Consensus        66 ------~l~~~i~~~~--~~-~~~vid~~~~-~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~  135 (176)
                            .....+....  .. ..++++.... .......++.+||++||.+++.+|+.+|+.   ...+.... +...+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~~~~~~~d~vI~v~a~~e~r~~Rl~~R~~---~~~~~~~~-~~~~q~  156 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSG---LSREEVLA-RERAQM  156 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTC---CTTHHHHH-HHTTSC
T ss_pred             hhhhhHHHHHHHHhhhhhcccceEEEEeeccccccccccceeEEEEecchhhHHHHHHhccc---chHHHHHH-HHHhCC
Confidence                  0111111111  11 2345553321 111122468899999999999999998842   11111111 110000


Q ss_pred             -HHHHhcCCCCcEEEecCCCHHHHHHHHHHHHHHH
Q 030477          136 -EEAKESYPEDIVLALKSDTIEDITRNIAILTDWV  169 (176)
Q Consensus       136 -~~~~~~~~~~~~i~~~~~s~~ev~~~i~~~~~~~  169 (176)
                       ......+ .+.+ ..|+++.+++...|..+++.|
T Consensus       157 ~~~~~~~~-aD~v-I~N~~s~~~l~~~v~~il~~l  189 (191)
T d1uf9a_         157 PEEEKRKR-ATWV-LENTGSLEDLERALKAVLAEL  189 (191)
T ss_dssp             CHHHHHHH-CSEE-ECCSSHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHh-CCEE-EECCCCHHHHHHHHHHHHHHc
Confidence             0000011 1333 345558999999999988754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.58  E-value=1.3e-15  Score=101.77  Aligned_cols=108  Identities=21%  Similarity=0.234  Sum_probs=64.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh-cCCeEeehhHHHhhcccCCCchhhhccccc---chHHHHHHHHHHhh----cCCeE
Q 030477           10 PNILVTGTPGTGKTTTSTALAES-TQLRHINIGELVREKNLHDGWDDELECHVI---NEDLVCDELEDIME----QGGNI   81 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~i~~~~~----~~~~v   81 (176)
                      ++|+|+|+|||||||+|+.|.++ .++.+++.+++...................   ......+.+...+.    ...+|
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   82 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVI   82 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            47889999999999999998765 478899988887655433222111000000   01122223333332    23467


Q ss_pred             EcCCCCCCCCC----------CcccEEEEEeCChHHHHHHHhhcCC
Q 030477           82 VDYHGCDFFPE----------RWFDRVVVLQTENSVLYDRLTKRGY  117 (176)
Q Consensus        82 id~~~~~~~~~----------~~~~~vi~l~~~~~~~~~R~~~r~~  117 (176)
                      +|......-..          .....+|||++|++++.+|+.+|+.
T Consensus        83 ~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  128 (152)
T d1ly1a_          83 ISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (152)
T ss_dssp             ECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred             cccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCC
Confidence            77533110000          1234689999999999999998863

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=1.7e-14  Score=101.18  Aligned_cols=69  Identities=12%  Similarity=0.003  Sum_probs=44.0

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCcccc-----chh-HHHHHHHHHHHHHhcCCCCcEEEecCC-CHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLT-----NNI-ECEIFQVLLEEAKESYPEDIVLALKSD-TIEDITRNI  162 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~ev~~~i  162 (176)
                      .++++|||++|++++.+|+.+|++..+...     ... ....+...+.+.........++.+|++ ++++|++.|
T Consensus       132 ~Pd~~i~L~~~~e~~~~Ri~~R~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         132 KPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             CCSEEEEECCCHHHHHHHHHHHHHHCTTCCCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHHHHHHHH
T ss_pred             CCceeEEecccHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHhh
Confidence            478999999999999999998865322211     111 223334444444433444456667755 899998876

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.9e-14  Score=100.72  Aligned_cols=39  Identities=33%  Similarity=0.504  Sum_probs=36.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK   47 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~   47 (176)
                      .|+|+|.|||||||||+|+.|+++||++|+++++++|..
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~   41 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL   41 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            469999999999999999999999999999999999863

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.54  E-value=1.1e-13  Score=97.03  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=33.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREK   47 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~   47 (176)
                      .+|.|||++||||||+|+.|. ++|++++++|++.+..
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l   39 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREV   39 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHH
Confidence            578899999999999999995 5899999999988764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=9.6e-14  Score=98.01  Aligned_cols=163  Identities=17%  Similarity=0.079  Sum_probs=76.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeE--eeh-------hHHHhhcccC--CCchhhhccccc--chHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRH--INI-------GELVREKNLH--DGWDDELECHVI--NEDLVCDELED   73 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~--~~~-------~~~~~~~~~~--~~~~~~~~~~~~--~~~~l~~~i~~   73 (176)
                      +|+++|+|.|+.||||||+++.|++.|...+  +..       +..++.....  ..+.......++  +.......+..
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i~~   80 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKK   80 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999985432  211       1112211100  011111111111  11112223333


Q ss_pred             HhhcCC-eEEcCCC-----------------------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHH
Q 030477           74 IMEQGG-NIVDYHG-----------------------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECE  129 (176)
Q Consensus        74 ~~~~~~-~vid~~~-----------------------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~  129 (176)
                      .+..+. ||.|...                       ...+  ..||++|||++++.+...|...++.  ...+.....+
T Consensus        81 ~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~--~~PDl~i~Ld~~~~~~~~r~~~~~~--~~~e~~~~~~  156 (214)
T d1tmka_          81 DLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGL--LKPDLTLFLSTQDVDNNAEKSGFGD--ERYETVKFQE  156 (214)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTS--BCCSEEEEEECC----------CCS--STTCCHHHHH
T ss_pred             HHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcC--CCcceehhccccHHHHHHHhcccch--hhhhhHHHHH
Confidence            344444 4556210                       0011  1489999999999988888665543  2222222222


Q ss_pred             HHHHHHHHHH----hcCCC-CcEEEecCCCHHHHHHHHHHHHHHHHhhc
Q 030477          130 IFQVLLEEAK----ESYPE-DIVLALKSDTIEDITRNIAILTDWVRNWQ  173 (176)
Q Consensus       130 ~~~~~~~~~~----~~~~~-~~~i~~~~~s~~ev~~~i~~~~~~~~~~~  173 (176)
                      .....+....    ..... ..+++.++.++++|.+.|..+++.+..-+
T Consensus       157 ~v~~~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l~~~  205 (214)
T d1tmka_         157 KVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLSTH  205 (214)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHhh
Confidence            2222222221    12222 23333344589999999999987765433

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.1e-13  Score=98.79  Aligned_cols=76  Identities=16%  Similarity=0.061  Sum_probs=48.1

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCC---------CCcEEEecCC-CHHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYP---------EDIVLALKSD-TIEDITRNIA  163 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~-s~~ev~~~i~  163 (176)
                      .||++|||++|++++.+|+.+|++..+........+.+...+........         ...++.+|+. +.+++.+.+.
T Consensus       152 ~Pdl~i~Ld~~pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~i~  231 (241)
T d1p5zb_         152 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLV  231 (241)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHH
T ss_pred             CCceeeeeccCHHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHHHH
Confidence            37899999999999999999888654433322333344444444322111         1245555544 7888888877


Q ss_pred             HHHHHH
Q 030477          164 ILTDWV  169 (176)
Q Consensus       164 ~~~~~~  169 (176)
                      .+++.+
T Consensus       232 ~~i~~~  237 (241)
T d1p5zb_         232 EKVKEF  237 (241)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.49  E-value=4.1e-15  Score=104.68  Aligned_cols=38  Identities=18%  Similarity=0.334  Sum_probs=30.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc----CC--eEeehhHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST----QL--RHINIGEL   43 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l----~~--~~~~~~~~   43 (176)
                      ..++.+|||+|+|||||||+|+.|++++    +.  .+++.|.+
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            3578899999999999999999998765    33  44665554

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-13  Score=96.80  Aligned_cols=106  Identities=14%  Similarity=0.198  Sum_probs=61.2

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCC----------eEeehhHHHhhccc-------CCCchhhhcccccchHHHHHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQL----------RHINIGELVREKNL-------HDGWDDELECHVINEDLVCDEL   71 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~----------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~i   71 (176)
                      |.+|.|+|++||||||+|+.|++.++.          .+++.|++.+....       ....... ....++.+.+.+.+
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~   80 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFD-HPDAFDNELILKTL   80 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTT-SGGGBCHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccccchhhhhhhhhcccccC-CcHHHHHHHHHhhh
Confidence            567889999999999999999998864          45777776432110       0000000 01112334455555


Q ss_pred             HHHhhcCCe-------------------------EEcCCCCCCCC---CCcccEEEEEeCChHHHHHHHhhcC
Q 030477           72 EDIMEQGGN-------------------------IVDYHGCDFFP---ERWFDRVVVLQTENSVLYDRLTKRG  116 (176)
Q Consensus        72 ~~~~~~~~~-------------------------vid~~~~~~~~---~~~~~~vi~l~~~~~~~~~R~~~r~  116 (176)
                      .....+..+                         +++... .++.   +..+|+.||+++|++++.+|...|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~-~l~~~~l~~~~D~~i~v~~~~~~~~~R~~~Rd  152 (213)
T d1uj2a_          81 KEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL-AFYSQEVRDLFQMKLFVDTDADTRLSRRVLRD  152 (213)
T ss_dssp             HHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTT-TTSSHHHHHHCSEEEEEECCHHHHHHHHHHHH
T ss_pred             hhhhcCCcccccccccccccccCceEEecccceEEecchh-hhccHHHHhhhheeeeecCCHHHHHHHHHHHH
Confidence            543332221                         222110 0111   1246899999999999999887774

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.6e-13  Score=95.33  Aligned_cols=80  Identities=18%  Similarity=0.045  Sum_probs=49.8

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCC---------CcEEEecCC-CHHHHHHHHH
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPE---------DIVLALKSD-TIEDITRNIA  163 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~-s~~ev~~~i~  163 (176)
                      .++++|||++|++++.+|+.+|++..+..........+...+......+..         ..++.+|+. +.+++.+.+.
T Consensus       149 ~pdl~i~Ld~~~~~~~~Ri~~r~r~~E~~i~~~yl~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~iID~~~d~~~~~~~~~  228 (241)
T d2ocpa1         149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQE  228 (241)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHH
T ss_pred             ccceEEEecCCHHHHHHHHhcccchhhhcCCHHHHHHHHHHHHHHHHhhhhhhhHhhcCCCCEEEEECCCchhhhHHHHH
Confidence            368999999999999999999987554433223333444444443322221         244555543 5666667777


Q ss_pred             HHHHHHHhhc
Q 030477          164 ILTDWVRNWQ  173 (176)
Q Consensus       164 ~~~~~~~~~~  173 (176)
                      ++++.+..+-
T Consensus       229 ~i~~~I~~~i  238 (241)
T d2ocpa1         229 DLMREVNTFV  238 (241)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=2.9e-13  Score=93.96  Aligned_cols=34  Identities=21%  Similarity=0.218  Sum_probs=29.1

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      -.+|.+|+|.|+.||||||+++.|+++++...+.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~~   39 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL   39 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            3567799999999999999999999998765553

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.5e-15  Score=101.42  Aligned_cols=33  Identities=36%  Similarity=0.377  Sum_probs=28.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ++.+|+|+|+|||||||+|+.|+++++..+++.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~   50 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC   50 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence            678999999999999999999999986655443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=2.2e-12  Score=88.60  Aligned_cols=41  Identities=20%  Similarity=0.309  Sum_probs=31.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhccc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNL   49 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~   49 (176)
                      +++|+|+||+||||||+++.|.+++...++......|.+..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~   42 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP   42 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCc
Confidence            57899999999999999999999875445554544554433

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.36  E-value=1.4e-13  Score=93.83  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=26.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      .++.+|+|+|+|||||||+|++|+++|+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            46789999999999999999999999854

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=3.6e-12  Score=87.86  Aligned_cols=148  Identities=16%  Similarity=0.186  Sum_probs=73.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeE-eehhHHHhhcccCCCchhhhcccccchHH----------------------
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRH-INIGELVREKNLHDGWDDELECHVINEDL----------------------   66 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------   66 (176)
                      +.|+|+||+||||||+++.|++++...+ +......+.+...+.-+.++  ++.+.+.                      
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy--~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg   79 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDY--NFVSVDEFKSMIKNNEFIEWAQFSGNYYG   79 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTE--EECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccc--eeccHHHHHHHHhcccceeeeEEccceee
Confidence            4589999999999999999999874322 22222233222222222211  1112211                      


Q ss_pred             -HHHHHHHHhhcC-CeEEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHH
Q 030477           67 -VCDELEDIMEQG-GNIVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEA  138 (176)
Q Consensus        67 -l~~~i~~~~~~~-~~vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  138 (176)
                       ....+......+ .++++...      ...++. .+..++++.++.+++.+|+.+|+...+   +... .++.....+.
T Consensus        80 ~~~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~-~~~~i~~~~~~~e~l~~RL~~Rg~~~~---~~I~-~Rl~~~~~e~  154 (186)
T d1gkya_          80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPEL-NARFLFIAPPSVEDLKKRLEGRGTETE---ESIN-KRLSAAQAEL  154 (186)
T ss_dssp             EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGG-CCEEEEEECSCHHHHHHHHHHHSCSCH---HHHH-HHHHHHHHHH
T ss_pred             cchhhHHHHhcCCCeEEecchHHHHHHHHHhhcc-cceEEEecCCcHHHHHHHHHhhccchh---HHHH-HHHHHHHHHH
Confidence             223333333333 34444321      111111 133567778889999999999985322   1121 2333333322


Q ss_pred             HhcCCC--CcEEEecCCCHHHHHHHHHHHH
Q 030477          139 KESYPE--DIVLALKSDTIEDITRNIAILT  166 (176)
Q Consensus       139 ~~~~~~--~~~i~~~~~s~~ev~~~i~~~~  166 (176)
                      ...+..  +.+| +| .+.+...+.+..++
T Consensus       155 ~~~~~~~fd~vI-~N-~dle~a~~~l~~iI  182 (186)
T d1gkya_         155 AYAETGAHDKVI-VN-DDLDKAYKELKDFI  182 (186)
T ss_dssp             HHHTTTCSSEEE-EC-SSHHHHHHHHHHHH
T ss_pred             HhhhhcCCCEEE-EC-cCHHHHHHHHHHHH
Confidence            222222  2333 44 45666666666555

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.2e-11  Score=85.14  Aligned_cols=149  Identities=16%  Similarity=0.297  Sum_probs=79.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCC--eEeehhHHHhhcccCCCchhhhcccccchHHHH-----------------
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQL--RHINIGELVREKNLHDGWDDELECHVINEDLVC-----------------   68 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------------   68 (176)
                      ++++|+|+||+||||||+.+.|.+....  ..+......|.+...+.-+.++  ++++.+.+.                 
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY--~Fvs~~~F~~~i~~g~flE~~~~~g~   78 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHY--FFVNHDEFKEMISRDAFLEHAEVFGN   78 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTB--EECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccc--eeecHHHHHHHhhhhhheeEEEECCc
Confidence            4689999999999999999999988642  2334444555555444333322  223333322                 


Q ss_pred             ------HHHHHHhhc-CCeEEcCCC------CCCCCCCcccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHH
Q 030477           69 ------DELEDIMEQ-GGNIVDYHG------CDFFPERWFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLL  135 (176)
Q Consensus        69 ------~~i~~~~~~-~~~vid~~~------~~~~~~~~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~  135 (176)
                            ..+...+.. ..+++|...      ...++.  +-.++++.++.+++.+|+.+|+...+.    .-..++....
T Consensus        79 ~YGt~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~--~~~ifi~pps~~~l~~RL~~Rg~~~~~----~i~~Rl~~a~  152 (205)
T d1s96a_          79 YYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPH--ARSIFILPPSKIELDRRLRGRGQDSEE----VIAKRMAQAV  152 (205)
T ss_dssp             EEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTT--CEEEEEECSSHHHHHHHHHTTSCSCHH----HHHHHHHHHH
T ss_pred             eeccccchHHHHHhcCCceeecCcHHHHHHHHhhhcc--cceeeeeccchHHHHHHHHhcCCchHH----HHHHHHHHHH
Confidence                  233333333 345555311      111221  223455677788999999998753221    1122333333


Q ss_pred             HHHHhcCCC-CcEEEecCCCHHHHHHHHHHHHH
Q 030477          136 EEAKESYPE-DIVLALKSDTIEDITRNIAILTD  167 (176)
Q Consensus       136 ~~~~~~~~~-~~~i~~~~~s~~ev~~~i~~~~~  167 (176)
                      .+.. .+.. +.+| +| .+.+...+.+..++.
T Consensus       153 ~E~~-~~~~fD~vI-vN-ddl~~a~~el~~iI~  182 (205)
T d1s96a_         153 AEMS-HYAEYDYLI-VN-DDFDTALTDLKTIIR  182 (205)
T ss_dssp             HHHT-TGGGSSEEE-EC-SSHHHHHHHHHHHHH
T ss_pred             HHHH-HHhCCCEEE-EC-cCHHHHHHHHHHHHH
Confidence            3221 1222 3443 34 457777777777763

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.6e-11  Score=84.79  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=23.1

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCe
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      .|+|+||+||||||+++.|+++++..
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~~   27 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSSI   27 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCCc
Confidence            48899999999999999999987643

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.27  E-value=4.3e-11  Score=81.42  Aligned_cols=33  Identities=15%  Similarity=0.104  Sum_probs=30.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIG   41 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~   41 (176)
                      .+.|+|+|+|||||||+|+.|++++|.+++..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            468999999999999999999999999998654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.20  E-value=8.4e-12  Score=86.01  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      .+.+|.|+|++||||||+|+.|++.++
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            445677999999999999999998774

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=7.9e-10  Score=81.33  Aligned_cols=106  Identities=14%  Similarity=0.120  Sum_probs=65.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC-------CeEeehhHHHhhc------ccCCCchhhhcccccchHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ-------LRHINIGELVREK------NLHDGWDDELECHVINEDLVCDELED   73 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~-------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~i~~   73 (176)
                      ..|.+|.|+|++||||||+|+.|++.+.       +.+++.|++....      .....++.   ...++-+.+.+.+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~---Pes~D~~~L~~~L~~  154 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGF---PESYDMHRLVKFVSD  154 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTS---GGGBCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHHHhcCCccCCc---hHhhhHHHHHHHHHH
Confidence            4567888999999999999999988763       3467888875321      11111111   112455667777766


Q ss_pred             HhhcCC-eEE--------------------------cCCCCC------------CCCCCcccEEEEEeCChHHHHHHHhh
Q 030477           74 IMEQGG-NIV--------------------------DYHGCD------------FFPERWFDRVVVLQTENSVLYDRLTK  114 (176)
Q Consensus        74 ~~~~~~-~vi--------------------------d~~~~~------------~~~~~~~~~vi~l~~~~~~~~~R~~~  114 (176)
                      +..++. +.+                          ++...-            ..-...+|+.||++++++++.+|...
T Consensus       155 lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifvda~~~~~~~r~i~  234 (308)
T d1sq5a_         155 LKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYIN  234 (308)
T ss_dssp             HTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHH
T ss_pred             HHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhheeeeecCCHHHHHHHHHH
Confidence            544322 211                          211100            00112478999999999999988776


Q ss_pred             c
Q 030477          115 R  115 (176)
Q Consensus       115 r  115 (176)
                      |
T Consensus       235 R  235 (308)
T d1sq5a_         235 R  235 (308)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.99  E-value=2.3e-09  Score=77.85  Aligned_cols=39  Identities=26%  Similarity=0.369  Sum_probs=29.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---C--CeEeehhHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---Q--LRHINIGELVR   45 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~--~~~~~~~~~~~   45 (176)
                      .|.++|.|+|++||||||+++.|.+.+   |  ..+++.|++.+
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   45 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            367899999999999999999998866   3  35788888764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=2e-09  Score=74.59  Aligned_cols=37  Identities=32%  Similarity=0.485  Sum_probs=30.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC-----CeEeehhHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ-----LRHINIGELVR   45 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~-----~~~~~~~~~~~   45 (176)
                      |.+|+++|+|||||||+|++|++.++     ...++.|.+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~   43 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR   43 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceeh
Confidence            56899999999999999999998874     34677776543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.92  E-value=4.8e-09  Score=77.89  Aligned_cols=29  Identities=21%  Similarity=0.188  Sum_probs=25.5

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCccc
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAKL  122 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~~  122 (176)
                      .++.+|||++|+++..+|+.+|+++.+..
T Consensus       156 ~pd~iIyLd~~pe~~l~RI~~RgR~~E~i  184 (333)
T d1p6xa_         156 QGGNIVVTTLNVEEHIRRLRTRARIGEQI  184 (333)
T ss_dssp             TTEEEEEEECCHHHHHHHHHHHSCTTCCC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCCcCCC
Confidence            36899999999999999999999877653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=3.3e-09  Score=76.20  Aligned_cols=36  Identities=31%  Similarity=0.533  Sum_probs=30.4

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +...++.++|+||||||||++++.||..+|.+++..
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i   76 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEE
Confidence            345678899999999999999999999999888643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.90  E-value=5e-09  Score=77.76  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=19.9

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCcc
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAK  121 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~  121 (176)
                      .+|.+|||++|+++..+|+.+|++..+.
T Consensus       159 ~pdliIyLd~~pe~~l~RIk~RgR~~E~  186 (331)
T d1osna_         159 PGTNLVVCTVSLPSHLSRVSKRARPGET  186 (331)
T ss_dssp             SCCEEEEEECCHHHHHHHCC------CC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCCCCC
Confidence            4789999999999999999999987654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=9e-09  Score=73.99  Aligned_cols=37  Identities=35%  Similarity=0.452  Sum_probs=32.1

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIG   41 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~   41 (176)
                      +...++.|+|.||||||||+++++++..++.+++..+
T Consensus        34 g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          34 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            4556788999999999999999999999999887543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.89  E-value=2.4e-09  Score=76.94  Aligned_cols=40  Identities=33%  Similarity=0.417  Sum_probs=32.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcCC--eEeehhHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQL--RHINIGELVR   45 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~~--~~~~~~~~~~   45 (176)
                      ..+|+.|+|.|||||||||+|+.||..++.  ..++.|++..
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~   70 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ   70 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence            346778999999999999999999999854  5567777644

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.89  E-value=4.5e-09  Score=77.85  Aligned_cols=28  Identities=25%  Similarity=0.208  Sum_probs=25.0

Q ss_pred             cccEEEEEeCChHHHHHHHhhcCCCCcc
Q 030477           94 WFDRVVVLQTENSVLYDRLTKRGYTGAK  121 (176)
Q Consensus        94 ~~~~vi~l~~~~~~~~~R~~~r~~~~~~  121 (176)
                      .++.+|||++|++++.+|+.+|+++.+.
T Consensus       154 ~pdliIyLd~~pe~~l~RI~~RgR~~E~  181 (329)
T d1e2ka_         154 PGTNIVLGALPEDRHIDRLAKRQRPGER  181 (329)
T ss_dssp             TTCEEEEEECCHHHHHHHHHHSCCTTCC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHcCCCcCC
Confidence            3689999999999999999999987665

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.89  E-value=3.2e-09  Score=75.92  Aligned_cols=40  Identities=30%  Similarity=0.537  Sum_probs=32.9

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh--hHHH
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI--GELV   44 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~--~~~~   44 (176)
                      +...++.|+|.||||||||++++.|++.+|++++..  +++.
T Consensus        38 g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~   79 (247)
T d1ixza_          38 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV   79 (247)
T ss_dssp             TCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhh
Confidence            345567899999999999999999999999988644  4443

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.4e-08  Score=68.96  Aligned_cols=25  Identities=16%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      ++|+|+||+||||||+++.|.++..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            5799999999999999999998763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.84  E-value=9.4e-10  Score=78.22  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=31.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      |++|.|+|++||||||+|+.|++++|+.+++.+|.
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~   35 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGP   35 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHH
Confidence            47899999999999999999999999999995443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=5.5e-09  Score=73.96  Aligned_cols=32  Identities=31%  Similarity=0.411  Sum_probs=28.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      ..+.++|+||||+||||+|+.|++++++.++.
T Consensus        34 ~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          34 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            35679999999999999999999999887753

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.65  E-value=3.3e-06  Score=51.40  Aligned_cols=138  Identities=17%  Similarity=0.242  Sum_probs=84.1

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEeehhHHHhhcccCCCchhhhcccccchHHHHHHHHHHhhcCCeEEcCC-----
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHINIGELVREKNLHDGWDDELECHVINEDLVCDELEDIMEQGGNIVDYH-----   85 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vid~~-----   85 (176)
                      +|++.||..|=|||++..|++++.+|.+..+.+--.        .      .-.+.++....++....++++|..     
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfela--------k------sgneklfehfnkladednviidrfvysnl   67 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA--------K------SGNEKLFEHFNKLADEDNVIIDRFVYSNL   67 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHH--------H------HCHHHHHHHHHHHTTCCSEEEESCHHHHH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhh--------h------ccCHHHHHHHHhhccccceeeehhhhhhh
Confidence            689999999999999999999999999874432110        0      011456666776667777887631     


Q ss_pred             -------CCCCCCCC----------cccEEEEEeCChHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHhcCCCCcEE
Q 030477           86 -------GCDFFPER----------WFDRVVVLQTENSVLYDRLTKRGYTGAKLTNNIECEIFQVLLEEAKESYPEDIVL  148 (176)
Q Consensus        86 -------~~~~~~~~----------~~~~vi~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  148 (176)
                             ....+.+.          ....++||.++|.++.+|+.-|+.+  .++... -+..-.++++....-.- +..
T Consensus        68 vyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgde--yiegkd-idsilelyrevmsnagl-hty  143 (164)
T d2axpa1          68 VYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDE--YIEGKD-IDSILELYREVMSNAGL-HTY  143 (164)
T ss_dssp             HHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCS--SCCSSH-HHHHHHHHHHHHHTCSS-CEE
T ss_pred             HHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhcccccc--ccccCC-HHHHHHHHHHHHhcCCc-eee
Confidence                   11122211          2346999999999999999988753  222211 12233334443322221 333


Q ss_pred             EecCC--CHHHHHHHHHHHH
Q 030477          149 ALKSD--TIEDITRNIAILT  166 (176)
Q Consensus       149 ~~~~~--s~~ev~~~i~~~~  166 (176)
                      .-+.+  +.+|+...+.-++
T Consensus       144 swdtgqwssdeiakdiiflv  163 (164)
T d2axpa1         144 SWDTGQWSSDEIAKDIIFLV  163 (164)
T ss_dssp             EEETTTSCHHHHHHHHHHHH
T ss_pred             ecccCCcchHHhhhheeEee
Confidence            33333  7888887765443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.64  E-value=1.1e-08  Score=72.54  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      .++.++|+||||+||||+|+.+++.+++++...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~   66 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT   66 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence            467899999999999999999999998876543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.64  E-value=6.2e-09  Score=74.37  Aligned_cols=33  Identities=30%  Similarity=0.550  Sum_probs=29.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      ++..|+|.||||||||+++++||..+|++++..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            445799999999999999999999999988754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=1.4e-08  Score=73.34  Aligned_cols=38  Identities=32%  Similarity=0.427  Sum_probs=33.1

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINIG   41 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~   41 (176)
                      .++..++.|+|+||||||||++++++|..+|++++..+
T Consensus        36 ~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          36 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            35667788999999999999999999999999987553

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=1.8e-08  Score=71.72  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      ...+.++|+||||+||||++++||+.+++.++
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            45678999999999999999999999988765

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=1.3e-08  Score=67.96  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=22.6

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      |+|+|+|++||||||+++.|++++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            689999999999999999999875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.59  E-value=1.7e-08  Score=74.39  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=30.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeE--eehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRH--INIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~--~~~~~~   43 (176)
                      ++..|+|.||||||||++|++||+.++.++  ++.+++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhccccccc
Confidence            567899999999999999999999998765  455555

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.48  E-value=5.9e-08  Score=72.86  Aligned_cols=36  Identities=28%  Similarity=0.317  Sum_probs=32.3

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEeeh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHINI   40 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~   40 (176)
                      +.++++.++|.||||+|||++|+.|+..+|.++++.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            446778999999999999999999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4e-08  Score=66.11  Aligned_cols=24  Identities=38%  Similarity=0.595  Sum_probs=22.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.|+|+|+|||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            579999999999999999999887

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.46  E-value=4.4e-08  Score=65.88  Aligned_cols=25  Identities=40%  Similarity=0.640  Sum_probs=22.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      .|+|+||+||||||+++.++..++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            5999999999999999999998754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=7.6e-08  Score=69.77  Aligned_cols=38  Identities=21%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc--------CCeEeehhHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST--------QLRHINIGELV   44 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l--------~~~~~~~~~~~   44 (176)
                      .+|.+|.|+|++||||||++..|.+.+        .+.+++.|++.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            346688899999999999999886654        34568999873

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.41  E-value=8e-08  Score=73.94  Aligned_cols=33  Identities=33%  Similarity=0.489  Sum_probs=30.1

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEeehh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHINIG   41 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~   41 (176)
                      +..|++.||+|||||.+|+.||+.+++||+..|
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~d   81 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            569999999999999999999999999998543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.34  E-value=1.5e-07  Score=62.68  Aligned_cols=25  Identities=24%  Similarity=0.163  Sum_probs=22.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      |++|.|+|.+||||||++..|+.+|
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5788999999999999999998876

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.34  E-value=1.6e-07  Score=65.86  Aligned_cols=27  Identities=48%  Similarity=0.721  Sum_probs=23.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +.+.++|+||||+||||+++.++++++
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            456799999999999999999999763

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=2.9e-07  Score=64.28  Aligned_cols=28  Identities=36%  Similarity=0.628  Sum_probs=24.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      +.+.++|+||||+||||+|+.|+++++.
T Consensus        35 ~~~~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          35 NMPHMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             CCCeEEEECCCCCCchhhHHHHHHHHhc
Confidence            3456899999999999999999998754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.19  E-value=5.4e-07  Score=64.09  Aligned_cols=27  Identities=41%  Similarity=0.496  Sum_probs=24.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+..++|+||||+||||+++.|++.+
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999987

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=6.1e-07  Score=62.86  Aligned_cols=26  Identities=46%  Similarity=0.717  Sum_probs=23.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.+.++|+||||+||||+++.+++++
T Consensus        32 ~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          32 NLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             TCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChHHHHHHHHHHH
Confidence            34568999999999999999999985

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.12  E-value=3.3e-06  Score=57.95  Aligned_cols=39  Identities=15%  Similarity=0.163  Sum_probs=25.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCeE-eehhHHHhhcc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLRH-INIGELVREKN   48 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~~-~~~~~~~~~~~   48 (176)
                      ..++.|+|+||   ||+|+.+.|.+.+.-.+ +......|.+.
T Consensus         7 ~~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R   46 (199)
T d1kjwa2           7 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKR   46 (199)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCC
T ss_pred             CCCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCC
Confidence            45677888887   69999999999875332 33333344433

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=8.7e-07  Score=61.79  Aligned_cols=27  Identities=48%  Similarity=0.700  Sum_probs=23.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +.+.++|+||||+||||+++.|+++++
T Consensus        34 ~~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          34 KLPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHhh
Confidence            344688999999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=9.8e-07  Score=62.33  Aligned_cols=26  Identities=46%  Similarity=0.652  Sum_probs=23.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+.++|+||||+||||+++.+++.+
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            34568999999999999999999986

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.1e-06  Score=63.03  Aligned_cols=33  Identities=24%  Similarity=0.520  Sum_probs=28.2

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCCeEe--ehhHH
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQLRHI--NIGEL   43 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~~~~--~~~~~   43 (176)
                      .++++||+|+|||.+|+.||+.++.+++  ++.++
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~   88 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY   88 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCeeEeccccc
Confidence            6889999999999999999999988775  54444

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.99  E-value=1.3e-06  Score=64.06  Aligned_cols=31  Identities=29%  Similarity=0.364  Sum_probs=24.3

Q ss_pred             CCeE-EEECCCCCChHHHHHHHHHhcC--CeEee
Q 030477            9 RPNI-LVTGTPGTGKTTTSTALAESTQ--LRHIN   39 (176)
Q Consensus         9 ~~~I-~l~G~~GsGKSTla~~La~~l~--~~~~~   39 (176)
                      ++.+ +++||||+|||.++++||.++|  .+++.
T Consensus       122 ~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~  155 (321)
T d1w44a_         122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYAT  155 (321)
T ss_dssp             ESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHhcCCCCeEE
Confidence            3444 5589999999999999999975  55544

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.98  E-value=1.1e-06  Score=62.77  Aligned_cols=23  Identities=26%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++|+||||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.94  E-value=2.6e-06  Score=59.64  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=20.9

Q ss_pred             eEEEECCCCCChHHHHHHHHHhc
Q 030477           11 NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +|+|+|++||||||+.+.|.+.+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            68999999999999999998755

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.93  E-value=3.5e-06  Score=56.50  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=28.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ...-|+|+|++|+||||++-.|.++ |+.+++ ||.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~-DD~   46 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIA-DDR   46 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEE-EEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe-cCe
Confidence            4567999999999999999999875 888877 543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.93  E-value=3.5e-06  Score=55.49  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=25.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      ++-+|+|.|.-||||||++|.+++.+|..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            44578999999999999999999999874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.92  E-value=2.8e-06  Score=58.74  Aligned_cols=30  Identities=33%  Similarity=0.334  Sum_probs=21.3

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+..+|.+|++.||+|+||||.+-.||..+
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344567889999999999999999998766

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.92  E-value=4.5e-06  Score=62.41  Aligned_cols=31  Identities=35%  Similarity=0.551  Sum_probs=27.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      .+..|++.||+|+|||.+|+.||+.++.+++
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhccccee
Confidence            5678999999999999999999998877764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=3.5e-06  Score=58.31  Aligned_cols=28  Identities=39%  Similarity=0.444  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+|.+|+++||+|+||||.+-.||.++
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467788999999999999999998765

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.89  E-value=4.1e-06  Score=59.41  Aligned_cols=31  Identities=29%  Similarity=0.274  Sum_probs=26.5

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      ..+.|+|.||+|+||||+++.+++.++..+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~   58 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYI   58 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeE
Confidence            4578999999999999999999998876543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.89  E-value=7.4e-06  Score=56.71  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc-----CCeEeehhHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST-----QLRHINIGELVR   45 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l-----~~~~~~~~~~~~   45 (176)
                      ..++|.|++|||||+++++++.++     ...+++..+...
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~   77 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   77 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHH
Confidence            348999999999999999999876     345667666544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.87  E-value=3.9e-06  Score=56.28  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=28.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ...-|+|+|++|+||||++-.|.++ |+.+++ ||.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lva-DD~   47 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVG-DDA   47 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEE-EEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceec-CCe
Confidence            4567999999999999999999775 888877 443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.84  E-value=5.7e-06  Score=56.99  Aligned_cols=27  Identities=37%  Similarity=0.430  Sum_probs=23.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|++.||+|+||||.+-.||..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999998765

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=6.1e-06  Score=57.77  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++-++.|.||+||||||+.+.++.-+
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3577899999999999999999997643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5.7e-06  Score=56.50  Aligned_cols=28  Identities=25%  Similarity=0.171  Sum_probs=24.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|+|+|||||||+|..++-+.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.80  E-value=7.3e-06  Score=54.57  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=28.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcCCeEeehhHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQLRHINIGEL   43 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~~~~~   43 (176)
                      ...-|+|+|++|+||||++-.|.++ |+.++. ||.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~-DD~   47 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVA-DDN   47 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE-SSE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe-CCe
Confidence            4568999999999999999999886 888877 554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.80  E-value=5.2e-06  Score=58.09  Aligned_cols=27  Identities=19%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++-++.|.||+||||||+.+.|+--
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          28 IKEGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCcchhhHhccCC
Confidence            357889999999999999999999663

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=5.6e-06  Score=61.01  Aligned_cols=27  Identities=37%  Similarity=0.431  Sum_probs=23.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+...|.|+|+|||||||+...|+..+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999998765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=7e-06  Score=57.88  Aligned_cols=28  Identities=21%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++..+.|+|++||||||+++.|..-+
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3577899999999999999999997754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.76  E-value=8.5e-06  Score=56.13  Aligned_cols=27  Identities=37%  Similarity=0.465  Sum_probs=23.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.+|++.||+|+||||.+..||..+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            355678889999999999999998876

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7.4e-06  Score=58.11  Aligned_cols=28  Identities=25%  Similarity=0.337  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.|++||||||+++.|..-+
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            3678899999999999999999997644

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.76  E-value=7.8e-06  Score=60.13  Aligned_cols=27  Identities=37%  Similarity=0.485  Sum_probs=23.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+...|.|+|+||+||||+...|.+.+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=8.7e-06  Score=56.17  Aligned_cols=26  Identities=42%  Similarity=0.448  Sum_probs=22.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+|++.||+|+||||.+-.||..+
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46788899999999999999998765

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.75  E-value=7e-06  Score=58.31  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++..+.|.|++||||||+++.|..-+
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3577899999999999999999997644

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=6.1e-06  Score=58.08  Aligned_cols=27  Identities=22%  Similarity=0.182  Sum_probs=23.6

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++-++.|.||+||||||+++.|+--
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          28 VPAGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             ECSSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            356789999999999999999999653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.74  E-value=8.1e-06  Score=57.12  Aligned_cols=28  Identities=36%  Similarity=0.414  Sum_probs=25.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.+++|.|+||||||++|..++...
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999998875

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.73  E-value=1e-05  Score=56.93  Aligned_cols=27  Identities=30%  Similarity=0.422  Sum_probs=23.7

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++-++.|.||+||||||+.+.|+.-+
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            467799999999999999999997644

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.72  E-value=6.5e-06  Score=58.11  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=24.2

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++..+.|.|++||||||+.+.|..-+
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3567899999999999999999997644

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.71  E-value=1.1e-05  Score=56.73  Aligned_cols=28  Identities=29%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++-++.|.||+||||||+.+.|+.-+
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3567899999999999999999997744

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=9e-06  Score=57.12  Aligned_cols=26  Identities=35%  Similarity=0.503  Sum_probs=23.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +..++|+||||+||||+|+.+++.++
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            44689999999999999999999874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.70  E-value=9.2e-06  Score=55.67  Aligned_cols=28  Identities=21%  Similarity=0.224  Sum_probs=24.5

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++.++.|.||.||||||+.+.|+.-+
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          24 IEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3577899999999999999999997644

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.4e-05  Score=55.00  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=22.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..++|.||+|+||||+++.+++.+
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhc
Confidence            4459999999999999999999976

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.67  E-value=8.7e-06  Score=56.84  Aligned_cols=28  Identities=25%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++-++.|.||+||||||+.+.|+.-+
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3577899999999999999999997744

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=1.2e-05  Score=58.02  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=24.8

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.++.|.||+||||||+.+.|+.-+
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            4678899999999999999999997754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=8.7e-06  Score=56.74  Aligned_cols=27  Identities=22%  Similarity=0.170  Sum_probs=23.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.++.+++|+|+|||||||+|-.++-.
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            567889999999999999999988654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.64  E-value=1.4e-05  Score=56.04  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      -++.|.||+||||||+.+.|+.-+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            367799999999999999998754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.63  E-value=1.5e-05  Score=56.70  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=23.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..++-++.|.||+||||||+++.|+.
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            35778999999999999999999965

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.62  E-value=1.1e-05  Score=56.50  Aligned_cols=28  Identities=29%  Similarity=0.274  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.+++|.|+|||||||+|-.++.+.
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            5677899999999999999999987653

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.61  E-value=7.4e-06  Score=57.65  Aligned_cols=28  Identities=25%  Similarity=0.278  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++-++.|.||+||||||+.+.|+--.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3577899999999999999999997743

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=2e-05  Score=53.35  Aligned_cols=29  Identities=24%  Similarity=0.393  Sum_probs=23.6

Q ss_pred             ccCCCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            3 QDSKRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         3 ~~~~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      |.+-..-+.|+|.|.||+||||+.+.|..
T Consensus        17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          17 QYPEGGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             HCCCCCCCEEEEECCCCCCHHHHHHHhcC
Confidence            34444556799999999999999999964

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.60  E-value=2e-05  Score=51.47  Aligned_cols=27  Identities=33%  Similarity=0.372  Sum_probs=23.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      |.+...|+|.|.||+|||||.+.+...
T Consensus         2 m~ke~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           2 MTREMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhCC
Confidence            566678999999999999999999654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.59  E-value=2.1e-05  Score=57.61  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=22.6

Q ss_pred             CCC-eEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRP-NILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~-~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++. .++++||+|+|||.+|+.||+.+
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHh
Confidence            444 67789999999999999999986

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.58  E-value=1e-05  Score=57.53  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++..+.|+|++||||||+++.|..-+
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3678899999999999999999996644

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.2e-05  Score=54.93  Aligned_cols=28  Identities=29%  Similarity=0.157  Sum_probs=24.5

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ++.++.+++|+|+||||||++|..++..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4567889999999999999999999753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.56  E-value=1.2e-05  Score=59.29  Aligned_cols=24  Identities=46%  Similarity=0.563  Sum_probs=21.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++|.|+||+||||+++.+++-|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            469999999999999999999765

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=3.6e-05  Score=52.24  Aligned_cols=26  Identities=35%  Similarity=0.606  Sum_probs=23.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...++|.|+||+|||+++..||.+.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHH
Confidence            55689999999999999999999865

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=2.5e-05  Score=48.65  Aligned_cols=27  Identities=15%  Similarity=0.150  Sum_probs=24.2

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++..|+++|.+||||||+|++|...+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            467889999999999999999997766

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.52  E-value=3.1e-05  Score=50.22  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|+|||||||+.+.|...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.49  E-value=4.2e-05  Score=52.01  Aligned_cols=35  Identities=17%  Similarity=0.199  Sum_probs=29.8

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEee
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHIN   39 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~~   39 (176)
                      +..|...|+|.|||++|||+++..|.+-++..+++
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            34677899999999999999999999988766654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=1.4e-05  Score=53.34  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=25.1

Q ss_pred             CccCCCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            2 AQDSKRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         2 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ++.|..+.+.|+|.|.|++|||||.++|..
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            455556778999999999999999999944

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.45  E-value=3.3e-05  Score=54.31  Aligned_cols=27  Identities=33%  Similarity=0.406  Sum_probs=23.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++-++.|.||.||||||+.+.|+.-+
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            577899999999999999999997644

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.45  E-value=3e-05  Score=56.94  Aligned_cols=25  Identities=36%  Similarity=0.525  Sum_probs=22.4

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +..|+|+|++||||||+.++|....
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEeeccccchHHHHHHhhhc
Confidence            4569999999999999999998865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=5.8e-05  Score=53.85  Aligned_cols=27  Identities=37%  Similarity=0.518  Sum_probs=23.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .....++|.|+||+|||+++..||.+.
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            345789999999999999999999874

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.39  E-value=3.5e-05  Score=53.54  Aligned_cols=28  Identities=21%  Similarity=0.172  Sum_probs=24.7

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++.+++|.|+||+|||+++..++-.+
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.38  E-value=4.5e-05  Score=54.06  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=24.3

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +.++-++.|.||.||||||+.+.|+--+
T Consensus        27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          27 VNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3567899999999999999999997644

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.38  E-value=4.1e-05  Score=52.88  Aligned_cols=27  Identities=37%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ++.++.+++|.|+||+|||++|..++-
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            356889999999999999999976643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.37  E-value=3.6e-05  Score=51.02  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+...|+|.|.+||||||+..+|...
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46678999999999999999999553

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.36  E-value=5.4e-05  Score=53.12  Aligned_cols=28  Identities=25%  Similarity=0.243  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..++-++.|.||.||||||+.+.|+.-+
T Consensus        25 v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          25 IEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3577899999999999999999997754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=3.4e-05  Score=53.94  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .++-++.|.||.||||||+.+.|+.
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4678999999999999999999976

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.34  E-value=0.00094  Score=49.92  Aligned_cols=26  Identities=35%  Similarity=0.606  Sum_probs=22.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ....++|.|+||+|||+++..||.+.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            44567888999999999999999864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.34  E-value=5.2e-05  Score=50.13  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+||||||+...|...
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.34  E-value=6.1e-05  Score=54.00  Aligned_cols=25  Identities=16%  Similarity=0.341  Sum_probs=21.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...+|+|+|+.|.||||+|+.+.++
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3468899999999999999999765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.33  E-value=8.5e-05  Score=52.86  Aligned_cols=29  Identities=31%  Similarity=0.280  Sum_probs=24.9

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .++.++.+++|.|+||+||||++..++-.
T Consensus        30 ~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          30 LGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            35678889999999999999999888754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.7e-05  Score=49.91  Aligned_cols=28  Identities=25%  Similarity=0.445  Sum_probs=23.6

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +|.+...|+|.|.+|+|||||...+...
T Consensus         1 ~m~~~~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           1 SMQEKYRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            3556678999999999999999998663

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=3.8e-05  Score=51.58  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             CCccCCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            1 MAQDSKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         1 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      |++.+......|+|.|.+|+||||+.+.+...
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhC
Confidence            55655555567999999999999999998764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=4.5e-05  Score=52.96  Aligned_cols=26  Identities=31%  Similarity=0.337  Sum_probs=22.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +-++++|+|..||||||+.+.|.+..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            34789999999999999999997753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=8.2e-05  Score=50.49  Aligned_cols=24  Identities=33%  Similarity=0.634  Sum_probs=21.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+.|+|.|+|++|||||...|...
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            368999999999999999999764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.28  E-value=7e-05  Score=49.05  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            4689999999999999999955

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=9.2e-05  Score=49.41  Aligned_cols=29  Identities=21%  Similarity=0.345  Sum_probs=24.0

Q ss_pred             cCCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            4 DSKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..+.+...|+|.|.+|+||||+..+|...
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34456678999999999999999999753

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=8.8e-05  Score=55.15  Aligned_cols=21  Identities=52%  Similarity=0.767  Sum_probs=18.0

Q ss_pred             CCeEEEECCCCCChHHHHHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTAL   29 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~L   29 (176)
                      .++.+|+|+|||||||+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            579999999999999987544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=9.4e-05  Score=47.80  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|+|++|||||...|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00011  Score=50.04  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.|+|.|++|+||||+..+|...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999663

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=9.4e-05  Score=48.79  Aligned_cols=21  Identities=33%  Similarity=0.638  Sum_probs=19.3

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+.+.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999964

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00012  Score=50.69  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=21.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.+..+|.|+||+||||+..+|...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch
Confidence            4578899999999999999999544

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.16  E-value=0.00012  Score=48.32  Aligned_cols=24  Identities=38%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +...|+|.|++|+||||+...|..
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999944

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0001  Score=47.92  Aligned_cols=22  Identities=32%  Similarity=0.605  Sum_probs=19.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|.|++||||+.++|..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999964

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.11  E-value=0.00011  Score=48.87  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.2

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      -|+|.|.|++||||+..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999964

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.11  E-value=0.00015  Score=54.62  Aligned_cols=36  Identities=33%  Similarity=0.415  Sum_probs=27.3

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcC---CeEeehhH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQ---LRHINIGE   42 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~---~~~~~~~~   42 (176)
                      .+.-+|+|+||.||||||....+.+.++   ..++...|
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEd  194 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED  194 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEecc
Confidence            3456899999999999999999988763   33454443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00017  Score=47.19  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=19.1

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...|..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.00019  Score=47.17  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|.+|+||||+...|...
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            35899999999999999999753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00016  Score=47.34  Aligned_cols=25  Identities=20%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+||||+...+...
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhC
Confidence            3457999999999999999999764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.03  E-value=0.0002  Score=46.78  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=19.5

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|++|+||||+...|...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999664

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.00019  Score=47.63  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00023  Score=46.98  Aligned_cols=22  Identities=18%  Similarity=0.456  Sum_probs=19.4

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|.+|+||||+...+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5889999999999999998653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00024  Score=47.37  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.1

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...|..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            588999999999999999965

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00015  Score=47.62  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      |...|+|.|.+|+||||+...|..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            445799999999999999999865

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00029  Score=50.03  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+.++.|.|+|||||||+|-.++...
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            467899999999999999999987765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00022  Score=47.05  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +...|+|.|.+|+|||||...+...
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhC
Confidence            4457999999999999999998753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.96  E-value=0.00041  Score=49.30  Aligned_cols=30  Identities=30%  Similarity=0.417  Sum_probs=26.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCCe
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQLR   36 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~~   36 (176)
                      ++...++|.||+++|||+++..|..-+|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            567889999999999999999999988653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00024  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999999763

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00022  Score=50.43  Aligned_cols=25  Identities=20%  Similarity=0.212  Sum_probs=22.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +..+.+|+|++|+||||++-.||..
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            4678899999999999999998765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.0003  Score=46.32  Aligned_cols=21  Identities=24%  Similarity=0.529  Sum_probs=19.1

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            589999999999999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.92  E-value=0.00018  Score=48.00  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .-|.|.|+|++||||+.++|..
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHhC
Confidence            4589999999999999999954

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00029  Score=46.10  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=19.5

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|.+|+||||+.+.+...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999998653

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00023  Score=48.34  Aligned_cols=26  Identities=23%  Similarity=0.181  Sum_probs=23.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++.++++|++|+||||+|..|++..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.88  E-value=0.00017  Score=47.59  Aligned_cols=24  Identities=33%  Similarity=0.321  Sum_probs=20.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +...|+|.|++|+||||+.+.|..
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            445799999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00036  Score=45.66  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00029  Score=46.43  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.|++||||+.++|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999964

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00037  Score=45.99  Aligned_cols=21  Identities=19%  Similarity=0.521  Sum_probs=19.2

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00033  Score=45.78  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|++.|.+|+||||+...|...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999998663

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00032  Score=45.94  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.+|+|||++.+.+...
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999999764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00034  Score=46.07  Aligned_cols=21  Identities=38%  Similarity=0.585  Sum_probs=19.3

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.83  E-value=0.00021  Score=47.53  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=20.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALA   30 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La   30 (176)
                      .+...|+|.|.+|+||||+.+.|.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            456789999999999999999884

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00041  Score=45.16  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|.+|+||||+...+...
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999999753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00042  Score=45.63  Aligned_cols=22  Identities=18%  Similarity=0.451  Sum_probs=19.6

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|.+|+||||+...+...
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5999999999999999988653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00039  Score=45.61  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=19.0

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999998865

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.81  E-value=0.00031  Score=50.28  Aligned_cols=17  Identities=41%  Similarity=0.485  Sum_probs=14.0

Q ss_pred             eEEEECCCCCChHHHHH
Q 030477           11 NILVTGTPGTGKTTTST   27 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~   27 (176)
                      .++|.|+|||||||++-
T Consensus        16 ~~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEEECCCTTSCHHHHHH
T ss_pred             CEEEEeeCCccHHHHHH
Confidence            46788999999998753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00044  Score=45.23  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|.+|+||||+.+.|..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4688999999999999999976

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00045  Score=45.31  Aligned_cols=22  Identities=18%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|.+|+|||++.+.+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.79  E-value=0.00042  Score=43.79  Aligned_cols=29  Identities=21%  Similarity=0.206  Sum_probs=22.5

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      .+....+|.+|.|||||+++-.+..+.|.
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~~~~~   34 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYAAQGY   34 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHHTTTC
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            35578899999999999998766555544

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.79  E-value=0.00044  Score=45.97  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=19.2

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00042  Score=45.44  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=19.0

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            588999999999999999865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00046  Score=45.25  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=20.1

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|.+|+||||+...|...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999999753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.76  E-value=0.00026  Score=46.91  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +-|.|.|.|++||||+.+.|..
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3489999999999999999954

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00043  Score=45.20  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|.+|+||||+...|...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.74  E-value=0.00051  Score=47.50  Aligned_cols=25  Identities=32%  Similarity=0.348  Sum_probs=21.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ++++|.|.|.+.+|||||..+|...
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhh
Confidence            4577999999999999999999654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.74  E-value=0.00013  Score=50.76  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=21.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +++..+|.|+||+||||+..+|...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ccceEEEECCCCccHHHHHHhhccH
Confidence            5677889999999999999999543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00048  Score=45.18  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999998865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00046  Score=46.39  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...|..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            588999999999999999865

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.69  E-value=0.00045  Score=49.85  Aligned_cols=17  Identities=35%  Similarity=0.563  Sum_probs=14.2

Q ss_pred             eEEEECCCCCChHHHHH
Q 030477           11 NILVTGTPGTGKTTTST   27 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~   27 (176)
                      .++|.|+|||||||++-
T Consensus        26 ~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             CEEEEECTTSCHHHHHH
T ss_pred             CEEEEecCCccHHHHHH
Confidence            47788999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.69  E-value=0.00058  Score=44.77  Aligned_cols=22  Identities=18%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00043  Score=45.73  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|.+|+||||+...+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35788999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00055  Score=44.51  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=19.2

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999999975

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00059  Score=45.07  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=19.3

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+.+.|..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00062  Score=45.20  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=21.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.-.|+|.|.+|+||||+.+.+.+.
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhC
Confidence            3347999999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00062  Score=44.80  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.00015  Score=46.97  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|.|++||||+.++|..+
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00069  Score=45.94  Aligned_cols=28  Identities=39%  Similarity=0.500  Sum_probs=23.4

Q ss_pred             CeEEEECC-CCCChHHHHHHHHHhc---CCeE
Q 030477           10 PNILVTGT-PGTGKTTTSTALAEST---QLRH   37 (176)
Q Consensus        10 ~~I~l~G~-~GsGKSTla~~La~~l---~~~~   37 (176)
                      +.++|+|- +|+||||++-.||..+   |..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rV   33 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRT   33 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeE
Confidence            57899999 5999999999998876   5554

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00075  Score=44.15  Aligned_cols=22  Identities=14%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|.+|+||||+...+...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999998653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.58  E-value=0.00082  Score=47.12  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=20.7

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|++||||+++|+.|.+.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHh
Confidence            345899999999999999999764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.56  E-value=0.00053  Score=48.37  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ....|+|.|.+|+||||+...|..+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4467999999999999999999643

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.55  E-value=0.00035  Score=43.84  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=19.5

Q ss_pred             CCCCCCeEEEECCCCCChHHHHH
Q 030477            5 SKRSRPNILVTGTPGTGKTTTST   27 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~   27 (176)
                      .+.++...+|.+|+|||||+++-
T Consensus         3 ~l~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           3 MLKKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TTSTTCEEEECCCTTSSTTTTHH
T ss_pred             HHHcCCcEEEEcCCCCChhHHHH
Confidence            35688999999999999997663

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0014  Score=46.54  Aligned_cols=34  Identities=32%  Similarity=0.392  Sum_probs=27.3

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc---CCeE--eehh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST---QLRH--INIG   41 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l---~~~~--~~~~   41 (176)
                      .+++|+++|-=|+||||++-.||..+   |..+  +|+|
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            47799999999999999888888776   5544  5655

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.51  E-value=0.0014  Score=46.42  Aligned_cols=29  Identities=21%  Similarity=0.207  Sum_probs=24.1

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...+.+..|.|++||||||+|-.++...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            45678899999999999999997776544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.00045  Score=45.46  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=9.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|+|.|.+|+||||+...|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999998854

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.49  E-value=0.00092  Score=47.46  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=23.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+.+.-|.|++||||||+|-.++...
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~a   81 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQA   81 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHH
Confidence            567899999999999999998887654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0011  Score=47.53  Aligned_cols=29  Identities=24%  Similarity=0.266  Sum_probs=25.8

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.++..+.|.|++|+||||++..++...
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            56788999999999999999999998744

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.001  Score=43.53  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|++.|.+|+||||+...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4688899999999999999876

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.45  E-value=0.001  Score=44.37  Aligned_cols=24  Identities=38%  Similarity=0.494  Sum_probs=21.0

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +|+|+|+.+||||..|..|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            479999999999999999986554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0011  Score=46.01  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHh
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..++++|+||.++||||+.|.++--
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHH
Confidence            3478899999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00052  Score=45.09  Aligned_cols=21  Identities=33%  Similarity=0.465  Sum_probs=18.1

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|+|.|.+|+||||+...+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999988754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00092  Score=44.68  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      -.|+|.|.+|+|||++...+...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            36889999999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.00098  Score=44.54  Aligned_cols=20  Identities=30%  Similarity=0.434  Sum_probs=18.5

Q ss_pred             CeEEEECCCCCChHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTAL   29 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~L   29 (176)
                      -.|+|.|.+|+||||+...+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.39  E-value=0.00093  Score=44.24  Aligned_cols=24  Identities=38%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .-.|.|.|.|.+|||||.++|.+.
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHh
Confidence            346999999999999999999753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.0011  Score=43.87  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             eEEEECCCCCChHHHHHHHHHh
Q 030477           11 NILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .|+|.|.+|+|||++.+.+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988664

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.00084  Score=47.84  Aligned_cols=29  Identities=28%  Similarity=0.224  Sum_probs=24.4

Q ss_pred             CCCCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            6 KRSRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         6 ~~~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +.+-+.|.|.|..|+|||||+.+|....|
T Consensus         3 ~~~iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           3 LKRLRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             hhhceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            34567899999999999999999976554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0015  Score=43.06  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=20.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|++.|.+|+||||+...+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57899999999999999988653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.20  E-value=0.0014  Score=44.94  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=20.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ...|+|.|.+|+||||+.+.+...
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0021  Score=45.27  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=26.8

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc---CCe--Eeehh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST---QLR--HINIG   41 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~   41 (176)
                      ...++|+++|-=|+||||++-.||..+   |..  ++|+|
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            356788899999999999988777765   544  45666

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.15  E-value=0.002  Score=44.43  Aligned_cols=23  Identities=30%  Similarity=0.258  Sum_probs=20.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+++|+||.++||||+.|.++--
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            47899999999999999988653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.00025  Score=47.32  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=20.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+.+|+|+.||||||+..+|.--+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999996544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0021  Score=48.27  Aligned_cols=23  Identities=39%  Similarity=0.585  Sum_probs=19.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      +.++|.|++|||||++.+.|...
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            46899999999999998766544

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.98  E-value=0.002  Score=46.00  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=21.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +.+-+|+|+.||||||+..+|.=-+|
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            34778999999999999999954343

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.90  E-value=0.0022  Score=43.52  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      -.|.+.|.+++|||||+.+|-...
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHh
Confidence            368999999999999999996443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.86  E-value=0.0025  Score=45.08  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=21.4

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +.|.|.|..|+||||++.+|.-..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            5789999999999999999965444

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0023  Score=47.95  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=20.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .+..|.|+|.||+||||+.++|..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            345799999999999999999953

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0029  Score=41.92  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|.+|+||||+...+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999665

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.76  E-value=0.0039  Score=42.50  Aligned_cols=24  Identities=42%  Similarity=0.541  Sum_probs=19.7

Q ss_pred             CeEEEE-CCCCCChHHHHHHHHHhc
Q 030477           10 PNILVT-GTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~-G~~GsGKSTla~~La~~l   33 (176)
                      ++|.|+ |--|+||||++..||..+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHH
Confidence            566665 889999999999888765

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.003  Score=45.46  Aligned_cols=19  Identities=42%  Similarity=0.450  Sum_probs=16.6

Q ss_pred             CCCeEEEECCCCCChHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTS   26 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla   26 (176)
                      +.-+-++.|.+|||||||+
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4567889999999999977

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.65  E-value=0.0035  Score=45.32  Aligned_cols=19  Identities=42%  Similarity=0.455  Sum_probs=16.7

Q ss_pred             CCCeEEEECCCCCChHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTS   26 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla   26 (176)
                      +.-+-++.|.+|||||||+
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4567789999999999999

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.63  E-value=0.0052  Score=41.43  Aligned_cols=24  Identities=38%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             CCC-eEEEECCCCCChHHHHHHHHH
Q 030477            8 SRP-NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~-~I~l~G~~GsGKSTla~~La~   31 (176)
                      +|. .|.|.|...+|||||+.+|..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            443 699999999999999999964

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0044  Score=45.91  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALA   30 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La   30 (176)
                      +.+-+|+|+.||||||+..+|.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4567899999999999999985

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.53  E-value=0.0041  Score=44.09  Aligned_cols=28  Identities=25%  Similarity=0.254  Sum_probs=24.5

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ++.++..+.|.|++|+|||+++..++..
T Consensus        64 pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          64 PYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            4467889999999999999999999765

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.51  E-value=0.0046  Score=43.35  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=25.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---CCe--Eeehh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---QLR--HINIG   41 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~~~--~~~~~   41 (176)
                      |+.|.|+|-=|+||||++-.||..+   |..  .+|+|
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            4678899999999999998887766   544  45665

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.50  E-value=0.0043  Score=40.90  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ..|+|.|..|+||||+.+.+...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            36899999999999999998654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=95.46  E-value=0.0032  Score=45.45  Aligned_cols=20  Identities=45%  Similarity=0.471  Sum_probs=16.8

Q ss_pred             CCCeEEEECCCCCChHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTST   27 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~   27 (176)
                      ..-+-++.|++|||||||+-
T Consensus        13 ~~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTC
T ss_pred             CCCEEEEEccCCCCcccccc
Confidence            35678999999999999764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.35  E-value=0.015  Score=34.23  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=28.1

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      .|.+.+.|.+.|.-|+|-|.+|+.|.+ .|+.+.
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~-~G~~Vs   36 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLN-EGYQIS   36 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHH-HTCEEE
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHh-CCCEEE
Confidence            466889999999999999999999966 677553

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=95.33  E-value=0.0065  Score=41.65  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=22.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCC
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      ...|++.|...+||||++.+|....|.
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            345789999999999999999776654

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.25  E-value=0.0098  Score=40.05  Aligned_cols=28  Identities=18%  Similarity=0.134  Sum_probs=22.6

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeE
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRH   37 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~   37 (176)
                      ...+|.+|+|+|||.++-.++.+++.+.
T Consensus        86 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~  113 (206)
T d2fz4a1          86 KRGCIVLPTGSGKTHVAMAAINELSTPT  113 (206)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCSCE
T ss_pred             CCcEEEeCCCCCceehHHhHHHHhcCce
Confidence            4567889999999999999988876543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.17  E-value=0.0082  Score=42.86  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHH
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +....|.|.|.|.|||||+-.+|..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHC
Confidence            4557799999999999999999974

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.08  E-value=0.0083  Score=39.88  Aligned_cols=21  Identities=38%  Similarity=0.476  Sum_probs=17.3

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..++++|.|||||.++-.++.
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHH
Confidence            467889999999998776664

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.08  E-value=0.0057  Score=43.77  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=19.9

Q ss_pred             CCeEEEECCCCCChHHHHHHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALA   30 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La   30 (176)
                      .|.|+|+|..+|||||+..+|.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLl   45 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIV   45 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHh
Confidence            4678999999999999999994

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.04  E-value=0.0074  Score=40.53  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=20.0

Q ss_pred             CeEEEECCCCCChHHHHHHHHHh
Q 030477           10 PNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      -.|.+.|.+.+|||||+.+|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            35899999999999999999653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.98  E-value=0.0078  Score=40.12  Aligned_cols=21  Identities=43%  Similarity=0.487  Sum_probs=19.0

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|.+.|.+.+|||||..+|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            578999999999999999954

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.01  Score=37.24  Aligned_cols=26  Identities=15%  Similarity=0.059  Sum_probs=20.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+-+|+||+.|||||-.-..+..+
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            35677899999999999877766654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.96  E-value=0.0037  Score=41.97  Aligned_cols=21  Identities=29%  Similarity=0.341  Sum_probs=17.4

Q ss_pred             CCCeEEEECCCCCChHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTA   28 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~   28 (176)
                      ++..+++.+|+|||||+++..
T Consensus        39 ~~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHHHH
Confidence            456789999999999998743

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.76  E-value=0.0066  Score=43.22  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             CCeEEEECCCCCChHHHHHHHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      .|-|+|+|.-+|||||+..+|..
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhC
Confidence            45688999999999999999943

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.69  E-value=0.015  Score=36.85  Aligned_cols=27  Identities=11%  Similarity=0.014  Sum_probs=22.6

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ..+.+-+|+||+.|||||-.-..+.++
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHh
Confidence            456788999999999999887777665

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.0079  Score=42.67  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=20.8

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      -.+|.|+|+.+|||||+...|...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCC
Confidence            347789999999999999999764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.012  Score=40.74  Aligned_cols=26  Identities=31%  Similarity=0.330  Sum_probs=22.7

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      -.|++.|...+||||++.+|.-.+|.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            48999999999999999999776654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.63  E-value=0.0077  Score=41.90  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             eEEEECCCCCChHHHHHHHHHhcCC
Q 030477           11 NILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      .|++.|...+|||||+.+|.-..|.
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             EEEEEeeCCCCHHHHHHHHHHHcCC
Confidence            4899999999999999999776665

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.61  E-value=0.014  Score=39.57  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=23.4

Q ss_pred             CeEEEE-CCCCCChHHHHHHHHHhc---CCeE--eehh
Q 030477           10 PNILVT-GTPGTGKTTTSTALAEST---QLRH--INIG   41 (176)
Q Consensus        10 ~~I~l~-G~~GsGKSTla~~La~~l---~~~~--~~~~   41 (176)
                      ++|.|+ +--|+||||++..||..+   |..+  +|+|
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            456666 778999999999998866   5444  4543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.59  E-value=0.012  Score=41.52  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=24.6

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc---CCeE--eehh
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST---QLRH--INIG   41 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l---~~~~--~~~~   41 (176)
                      |+.|.|.|==|+||||++-.||..|   |..+  +|+|
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            4678889999999999877776654   5544  5655

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.54  E-value=0.0099  Score=41.93  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=22.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...|.|.|.|.+||||+...|..+-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            44568999999999999999997753

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=94.54  E-value=0.011  Score=41.88  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             cCCCCCCeEEEECCCCCChHH
Q 030477            4 DSKRSRPNILVTGTPGTGKTT   24 (176)
Q Consensus         4 ~~~~~~~~I~l~G~~GsGKST   24 (176)
                      ..+.+++.++|.+|+|||||+
T Consensus         4 ~~~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           4 DIFRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSSSTTCEEEECCCTTSSTTT
T ss_pred             HHhhcCCcEEEEECCCCCHHH
Confidence            345788999999999999996

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.46  E-value=0.016  Score=40.95  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             CeEEEECCCCCChHHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ..|.|.|.|.+||||+-.+|..
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHC
Confidence            4799999999999999999975

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.42  E-value=0.013  Score=40.02  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCC
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQL   35 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~   35 (176)
                      -.|.+.|..++||||++..|.-..|.
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999998665554

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.37  E-value=0.013  Score=46.70  Aligned_cols=26  Identities=23%  Similarity=0.482  Sum_probs=22.9

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...|+|+|-+|||||+-++.+-+.+
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999997765

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.18  E-value=0.015  Score=46.57  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.2

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...|+|+|-+|||||+-++.+-+.+
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998765

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.17  E-value=0.01  Score=43.36  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=23.0

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhcC
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAESTQ   34 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l~   34 (176)
                      +-+.|.|.|..++||||++.+|....|
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            346799999999999999999976554

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.14  E-value=0.016  Score=46.48  Aligned_cols=26  Identities=27%  Similarity=0.528  Sum_probs=23.1

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...|+|+|-+|||||+-++.+.+.+
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999997765

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.12  E-value=0.017  Score=41.01  Aligned_cols=28  Identities=21%  Similarity=0.201  Sum_probs=23.8

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      ++.++..+.|.|++|+|||+++..++..
T Consensus        64 pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          64 PIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            4567889999999999999998877653

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.79  E-value=0.018  Score=46.65  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=22.7

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...|+|+|-+|||||+-++.+-+.+
T Consensus       122 ~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         122 ENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999887765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.76  E-value=0.018  Score=41.24  Aligned_cols=21  Identities=38%  Similarity=0.444  Sum_probs=19.0

Q ss_pred             eEEEECCCCCChHHHHHHHHH
Q 030477           11 NILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus        11 ~I~l~G~~GsGKSTla~~La~   31 (176)
                      -|.|.|.|.+||||+-.+|..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             cEeEECCCCCCHHHHHHHHHC
Confidence            488999999999999999954

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.70  E-value=0.021  Score=45.87  Aligned_cols=27  Identities=26%  Similarity=0.423  Sum_probs=23.4

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++..|+|+|-+|||||+-++.+.+.+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999997765

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.69  E-value=0.016  Score=40.92  Aligned_cols=27  Identities=26%  Similarity=0.235  Sum_probs=22.6

Q ss_pred             CCCCCCeEEEECCCCCChHHHHHHHHH
Q 030477            5 SKRSRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         5 ~~~~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      ++.++..+.|.|++|+|||+++..+..
T Consensus        63 pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          63 PVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             CCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             cccCCceEeeccCCCCChHHHHHHHHh
Confidence            446788899999999999999987644

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.65  E-value=0.015  Score=39.86  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAE   31 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~   31 (176)
                      +++-+++.+|.|+|||+++-..+-
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHHH
Confidence            456788999999999988766554

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.037  Score=38.07  Aligned_cols=27  Identities=30%  Similarity=0.222  Sum_probs=22.9

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .++...+|+|..|||||-++-..+...
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~~  100 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFLA  100 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHHH
Confidence            466789999999999999998887653

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.23  E-value=0.022  Score=46.10  Aligned_cols=26  Identities=27%  Similarity=0.431  Sum_probs=22.8

Q ss_pred             CCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            8 SRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      +...|+|+|-+|||||.-++.+.+.+
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999987765

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.19  E-value=0.035  Score=34.96  Aligned_cols=24  Identities=21%  Similarity=0.027  Sum_probs=17.5

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhc
Q 030477           10 PNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+=+++||+.|||||-.-..+.++
T Consensus         3 ~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           3 WIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEEEccccCHHHHHHHHHHHHH
Confidence            456789999999999544444544

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.28  E-value=0.069  Score=37.33  Aligned_cols=26  Identities=27%  Similarity=0.325  Sum_probs=22.0

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHh
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAES   32 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~   32 (176)
                      .+++.-+|.|..|||||-++-..+..
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~~~  127 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAILD  127 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred             cCcceeeeeccccccccHHHHHHHHH
Confidence            46677899999999999999887654

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=89.98  E-value=0.16  Score=37.80  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=25.5

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      .+..+|.|.+|||||.++..|.++++-+.+
T Consensus        31 ~~~q~l~GltGS~ka~~iA~l~~~~~rp~L   60 (413)
T d1t5la1          31 VKHQTLLGATGTGKTFTISNVIAQVNKPTL   60 (413)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEeCCCCcHHHHHHHHHHHHhCCCEE
Confidence            467889999999999999999999876543

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=88.68  E-value=0.12  Score=34.17  Aligned_cols=25  Identities=24%  Similarity=0.129  Sum_probs=19.7

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhc
Q 030477            9 RPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      ++.+++.-|.|||||.++....-..
T Consensus        40 g~~vlv~apTGsGKT~~~~~~~~~~   64 (206)
T d1oywa2          40 GRDCLVVMPTGGGKSLCYQIPALLL   64 (206)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhc
Confidence            4678999999999999886665443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.43  E-value=0.18  Score=28.88  Aligned_cols=28  Identities=14%  Similarity=0.072  Sum_probs=23.3

Q ss_pred             CeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477           10 PNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      +.|-+.|.-|+|-|-+|+.|.+ .|+.+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~-~G~~Vs   29 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFS-NGNDVY   29 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEE
T ss_pred             cEEEEEeECHHHHHHHHHHHHh-CCCeEE
Confidence            4688999999999999999955 677553

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=0.36  Score=35.65  Aligned_cols=20  Identities=40%  Similarity=0.511  Sum_probs=15.7

Q ss_pred             CCeEEEECCCCCChHHHHHH
Q 030477            9 RPNILVTGTPGTGKTTTSTA   28 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~   28 (176)
                      ....+|.+..|||||++.-.
T Consensus        16 ~g~~lv~A~AGsGKT~~l~~   35 (485)
T d1w36b1          16 QGERLIEASAGTGKTFTIAA   35 (485)
T ss_dssp             SSCEEEECCTTSCHHHHHHH
T ss_pred             CCCeEEEEcCchHHHHHHHH
Confidence            34688999999999986533

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=85.38  E-value=0.47  Score=35.10  Aligned_cols=30  Identities=27%  Similarity=0.346  Sum_probs=25.3

Q ss_pred             CCeEEEECCCCCChHHHHHHHHHhcCCeEe
Q 030477            9 RPNILVTGTPGTGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         9 ~~~I~l~G~~GsGKSTla~~La~~l~~~~~   38 (176)
                      ...+.|.|.+||||+.++..|.++++-+.+
T Consensus        28 ~~~~~L~GlsgS~ka~~~A~l~~~~~rp~L   57 (408)
T d1c4oa1          28 ERFVTLLGATGTGKTVTMAKVIEALGRPAL   57 (408)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEecCCCCHHHHHHHHHHHHhCCCEE
Confidence            356899999999999999999999876543

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.51  E-value=0.29  Score=32.67  Aligned_cols=20  Identities=35%  Similarity=0.499  Sum_probs=16.8

Q ss_pred             CCCeEEEECCCCCChHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTST   27 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~   27 (176)
                      .++-+++.+++|||||...-
T Consensus        46 ~g~dvl~~a~TGsGKT~a~~   65 (212)
T d1qdea_          46 EGHDVLAQAQSGTGKTGTFS   65 (212)
T ss_dssp             TTCCEEEECCTTSSHHHHHH
T ss_pred             cCCCEEeecccccchhhhhH
Confidence            46789999999999998654

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.49  E-value=0.15  Score=33.81  Aligned_cols=19  Identities=26%  Similarity=0.361  Sum_probs=15.8

Q ss_pred             CCCeEEEECCCCCChHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTS   26 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla   26 (176)
                      ++.-+++..|.|||||...
T Consensus        37 ~G~dvii~a~TGSGKTlay   55 (209)
T d1q0ua_          37 RGESMVGQSQTGTGKTHAY   55 (209)
T ss_dssp             HTCCEEEECCSSHHHHHHH
T ss_pred             CCCCeEeecccccccceee
Confidence            3567999999999999854

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.46  E-value=0.3  Score=32.42  Aligned_cols=19  Identities=26%  Similarity=0.368  Sum_probs=15.8

Q ss_pred             CCCeEEEECCCCCChHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTS   26 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla   26 (176)
                      +++-+++..++|||||...
T Consensus        37 ~g~dvl~~A~TGsGKTla~   55 (207)
T d1t6na_          37 LGMDVLCQAKSGMGKTAVF   55 (207)
T ss_dssp             TTCCEEEECCTTSCHHHHH
T ss_pred             cCCCeEEEecccccccccc
Confidence            4578999999999997654

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=83.28  E-value=0.32  Score=33.08  Aligned_cols=17  Identities=29%  Similarity=0.591  Sum_probs=15.3

Q ss_pred             CCCeEEEECCCCCChHH
Q 030477            8 SRPNILVTGTPGTGKTT   24 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKST   24 (176)
                      +++-+++..++|||||.
T Consensus        57 ~g~dvvi~a~TGsGKTl   73 (238)
T d1wrba1          57 EHRDIMACAQTGSGKTA   73 (238)
T ss_dssp             TTCCEEEECCTTSSHHH
T ss_pred             CCCCEEEECCCCCCcce
Confidence            45789999999999998

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=82.80  E-value=0.59  Score=33.14  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=25.0

Q ss_pred             CCccCCCCCCeEEEECCCC-CChHHHHHHHHHhcCCeEe
Q 030477            1 MAQDSKRSRPNILVTGTPG-TGKTTTSTALAESTQLRHI   38 (176)
Q Consensus         1 ~~~~~~~~~~~I~l~G~~G-sGKSTla~~La~~l~~~~~   38 (176)
                      |+...+++++.|+|+|.+| .| |.+++.|.++ |+.++
T Consensus         3 ~~~~~~~~gk~VlVTG~sGfIG-s~l~~~Ll~~-G~~V~   39 (342)
T d1y1pa1           3 IDNAVLPEGSLVLVTGANGFVA-SHVVEQLLEH-GYKVR   39 (342)
T ss_dssp             STTCSSCTTCEEEEETTTSHHH-HHHHHHHHHT-TCEEE
T ss_pred             CCCCCCCCcCEEEEECCCCHHH-HHHHHHHHHC-cCEEE
Confidence            3455677889999999999 67 5555555443 66654

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=81.89  E-value=0.44  Score=31.64  Aligned_cols=25  Identities=44%  Similarity=0.417  Sum_probs=20.1

Q ss_pred             CCCCeEEEECCCCCChHHHHHHHHHhc
Q 030477            7 RSRPNILVTGTPGTGKTTTSTALAEST   33 (176)
Q Consensus         7 ~~~~~I~l~G~~GsGKSTla~~La~~l   33 (176)
                      .+.++|.|+|--  ||||.+.+|++-|
T Consensus         3 ~~~~vI~ITGT~--GKTTt~~~l~~iL   27 (234)
T d1e8ca3           3 DNLRLVGVTGTN--GKTTTTQLLAQWS   27 (234)
T ss_dssp             GSSEEEEEESSS--CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCC--cHHHHHHHHHHHH
Confidence            355788899876  9999999998754

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.83  E-value=0.41  Score=31.55  Aligned_cols=19  Identities=37%  Similarity=0.513  Sum_probs=15.4

Q ss_pred             CCCeEEEECCCCCChHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTS   26 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla   26 (176)
                      +++-+++.+++|||||...
T Consensus        37 ~g~dvi~~a~tGsGKTlay   55 (206)
T d1s2ma1          37 TGRDILARAKNGTGKTAAF   55 (206)
T ss_dssp             HTCCEEEECCTTSCHHHHH
T ss_pred             cCCCEEEecCCcchhhhhh
Confidence            3467999999999999654

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.46  E-value=0.41  Score=31.65  Aligned_cols=19  Identities=37%  Similarity=0.494  Sum_probs=15.9

Q ss_pred             CCCeEEEECCCCCChHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTS   26 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla   26 (176)
                      .++-+++..+.|||||...
T Consensus        39 ~g~dvl~~a~TGsGKTlay   57 (206)
T d1veca_          39 SGRDILARAKNGTGKSGAY   57 (206)
T ss_dssp             TTCCEEEECCSSSTTHHHH
T ss_pred             cCCCEEeeccCcccccccc
Confidence            4578999999999999644

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.24  E-value=0.47  Score=31.73  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=16.5

Q ss_pred             CCCeEEEECCCCCChHHHHH
Q 030477            8 SRPNILVTGTPGTGKTTTST   27 (176)
Q Consensus         8 ~~~~I~l~G~~GsGKSTla~   27 (176)
                      .+.-+++.+++|||||...-
T Consensus        48 ~g~dvl~~a~TGsGKTlayl   67 (218)
T d2g9na1          48 KGYDVIAQAQSGTGKTATFA   67 (218)
T ss_dssp             HTCCEEEECCTTSSHHHHHH
T ss_pred             cCCCEEEEcccchhhhhhhh
Confidence            35679999999999998663

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.05  E-value=0.42  Score=31.64  Aligned_cols=21  Identities=29%  Similarity=0.366  Sum_probs=17.5

Q ss_pred             CeEEEECCCCCChHHHHHHHH
Q 030477           10 PNILVTGTPGTGKTTTSTALA   30 (176)
Q Consensus        10 ~~I~l~G~~GsGKSTla~~La   30 (176)
                      ..+++..+.|||||...-...
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~   63 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPL   63 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHH
T ss_pred             CCeeeechhcccccceeeccc
Confidence            478999999999999776554

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.29  E-value=0.55  Score=33.88  Aligned_cols=30  Identities=10%  Similarity=0.076  Sum_probs=21.1

Q ss_pred             CCCeEEEEC--CCCCChHHHHHHHHHhcCCeE
Q 030477            8 SRPNILVTG--TPGTGKTTTSTALAESTQLRH   37 (176)
Q Consensus         8 ~~~~I~l~G--~~GsGKSTla~~La~~l~~~~   37 (176)
                      ++....|+|  ||+||||.+|...-.--|+.+
T Consensus        15 ~g~~~yvaaAFPSaCGKTnlAMl~p~~pGwkv   46 (363)
T d1khba1          15 EGEKKYLAAAFPSACGKTNLAMMNPSLPGWKV   46 (363)
T ss_dssp             TSCEEEEEEECCTTSCHHHHHTCCCCSTTCEE
T ss_pred             CCCEEEEEEecCccccchhHHHhCCCCCCcEE
Confidence            466777776  899999999985432225554