Citrus Sinensis ID: 030516

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQICMCK
cccccccEEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHccccEEEEcccccccHHHccccccHHHHHHcccccHHHHHccHHHHHHHHHHccccccccc
cccccccEEEEEEcccHHHHHHHHHHHHHHccccccccccEEEEEEEcccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHccccEEEEccccccHHHHHHccHHHHHHHHHHHccEEccEccHcHHEHHEHEHHcEEEEcc
MATAETQTMVVGIDDSEQSTYALQWTLDHffanstvnppfkLVIVHarpspsaviglagpgavevlphvdsDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQICMCK
mataetqtmvvgiddSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKeicssksvhdFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQICMCK
MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQICMCK
**********VGI****QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQICMC*
****ETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQICMCK
********MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQICMCK
*****TQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQICMCK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
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MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNCFGYYSYLSIIKRTQICMCK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query176
255564142161 conserved hypothetical protein [Ricinus 0.755 0.826 0.751 3e-53
449436499162 PREDICTED: universal stress protein MJ05 0.755 0.820 0.731 5e-52
359480262161 PREDICTED: universal stress protein MJ05 0.755 0.826 0.744 3e-51
38016525151 fiber protein Fb19, partial [Gossypium b 0.698 0.814 0.788 3e-50
147865592140 hypothetical protein VITISV_015456 [Viti 0.715 0.9 0.769 9e-50
224131134162 predicted protein [Populus trichocarpa] 0.755 0.820 0.723 2e-48
297828493162 universal stress protein family protein 0.755 0.820 0.708 2e-47
18407428162 adenine nucleotide alpha hydrolases-like 0.755 0.820 0.694 5e-47
297743875182 unnamed protein product [Vitis vinifera] 0.755 0.730 0.744 1e-46
194466125181 universal stress protein [Arachis hypoga 0.75 0.729 0.683 1e-46
>gi|255564142|ref|XP_002523068.1| conserved hypothetical protein [Ricinus communis] gi|223537630|gb|EEF39253.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 117/133 (87%)

Query: 1   MATAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGP 60
           MATAE Q M+VGIDDSE S YAL+WTLDHFF     + PFKLV+VH++P+P++ +GLAGP
Sbjct: 1   MATAEKQVMIVGIDDSEHSVYALEWTLDHFFVPFGPSSPFKLVVVHSKPTPASAVGLAGP 60

Query: 61  GAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASI 120
           GA EVLP+VD+D K+IAARVVE+AKE C+SKSV+D V EVVEGDARN+LCEAVEKHHASI
Sbjct: 61  GAAEVLPYVDADLKRIAARVVEKAKEKCTSKSVNDVVYEVVEGDARNVLCEAVEKHHASI 120

Query: 121 LVVGSHGYGAIKR 133
           LVVGSHGYGAIKR
Sbjct: 121 LVVGSHGYGAIKR 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449436499|ref|XP_004136030.1| PREDICTED: universal stress protein MJ0531-like [Cucumis sativus] gi|449532390|ref|XP_004173164.1| PREDICTED: universal stress protein MJ0531-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359480262|ref|XP_002265742.2| PREDICTED: universal stress protein MJ0531-like isoform 2 [Vitis vinifera] gi|297743874|emb|CBI36844.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|38016525|gb|AAR07598.1| fiber protein Fb19, partial [Gossypium barbadense] Back     alignment and taxonomy information
>gi|147865592|emb|CAN83653.1| hypothetical protein VITISV_015456 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131134|ref|XP_002321009.1| predicted protein [Populus trichocarpa] gi|222861782|gb|EEE99324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297828493|ref|XP_002882129.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297327968|gb|EFH58388.1| universal stress protein family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18407428|ref|NP_566108.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] gi|3738285|gb|AAC63627.1| expressed protein [Arabidopsis thaliana] gi|15451080|gb|AAK96811.1| Unknown protein [Arabidopsis thaliana] gi|20148413|gb|AAM10097.1| unknown protein [Arabidopsis thaliana] gi|330255785|gb|AEC10879.1| adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297743875|emb|CBI36845.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|194466125|gb|ACF74293.1| universal stress protein [Arachis hypogaea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query176
TAIR|locus:2043273162 AT2G47710 "AT2G47710" [Arabido 0.755 0.820 0.694 4.8e-46
TAIR|locus:2154369150 AT5G49050 "AT5G49050" [Arabido 0.670 0.786 0.491 4.5e-27
TAIR|locus:2024291171 AT1G09740 "AT1G09740" [Arabido 0.698 0.719 0.385 7.5e-18
TAIR|locus:2081531226 AT3G11930 "AT3G11930" [Arabido 0.795 0.619 0.375 3.2e-17
TAIR|locus:2076381204 AT3G58450 "AT3G58450" [Arabido 0.704 0.607 0.323 1.3e-11
TAIR|locus:2096089162 AT3G62550 "AT3G62550" [Arabido 0.721 0.783 0.307 2.2e-11
TAIR|locus:2199282160 AT1G68300 "AT1G68300" [Arabido 0.738 0.812 0.326 1.2e-10
TAIR|locus:2200036242 AT1G11360 [Arabidopsis thalian 0.698 0.508 0.284 1.1e-08
TAIR|locus:2131719260 PHOS34 "AT4G27320" [Arabidopsi 0.659 0.446 0.282 1.5e-05
TAIR|locus:2147319242 PHOS32 "AT5G54430" [Arabidopsi 0.653 0.475 0.268 6.5e-05
TAIR|locus:2043273 AT2G47710 "AT2G47710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 93/134 (69%), Positives = 110/134 (82%)

Query:     1 MATAETQT-MVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAG 59
             MAT + ++ MVVG+DDSEQSTYAL+WTLD FFA    N PFKL IVHA+P+  + +GLAG
Sbjct:     1 MATGDGKSVMVVGVDDSEQSTYALEWTLDRFFAPYAPNYPFKLFIVHAKPNAVSAVGLAG 60

Query:    60 PGAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHAS 119
             PG  EV+P+VD+D K  AA+VVE+AK IC S+SVH  V+EV EGDARNILCE V+KHHAS
Sbjct:    61 PGTAEVVPYVDADLKHTAAKVVEKAKAICQSRSVHGAVIEVFEGDARNILCEVVDKHHAS 120

Query:   120 ILVVGSHGYGAIKR 133
             ILVVGSHGYGAIKR
Sbjct:   121 ILVVGSHGYGAIKR 134
GO:0003674 "molecular_function" evidence=ND
GO:0005773 "vacuole" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0002238 "response to molecule of fungal origin" evidence=RCA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2154369 AT5G49050 "AT5G49050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024291 AT1G09740 "AT1G09740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081531 AT3G11930 "AT3G11930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076381 AT3G58450 "AT3G58450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096089 AT3G62550 "AT3G62550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199282 AT1G68300 "AT1G68300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200036 AT1G11360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131719 PHOS34 "AT4G27320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147319 PHOS32 "AT5G54430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027986001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (161 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 2e-14
pfam00582139 pfam00582, Usp, Universal stress protein family 9e-12
COG0589154 COG0589, UspA, Universal stress protein UspA and r 4e-07
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 5e-06
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information 
 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 8   TMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLP 67
            ++V +D SE+S  AL+W               +LV++H    P +          E   
Sbjct: 1   RILVAVDGSEESERALRWAARLARRLGA-----ELVLLHVVDPPPSSAAELAELLEEE-- 53

Query: 68  HVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHG 127
                    A  ++E  +E  +   V      V+EGD    + EA E+  A ++V+GS G
Sbjct: 54  ---------ARALLEALREALAEAGVK-VETVVLEGDPAEAILEAAEELGADLIVMGSRG 103

Query: 128 YGAIKR 133
              ++R
Sbjct: 104 RSGLRR 109

The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity. Length = 130
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 176
PRK09982142 universal stress protein UspD; Provisional 99.89
PRK15456142 universal stress protein UspG; Provisional 99.88
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.87
PRK15005144 universal stress protein F; Provisional 99.86
PRK10116142 universal stress protein UspC; Provisional 99.84
PRK15118144 universal stress global response regulator UspA; P 99.83
PRK11175 305 universal stress protein UspE; Provisional 99.81
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.75
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.75
cd01987124 USP_OKCHK USP domain is located between the N-term 99.74
PRK11175305 universal stress protein UspE; Provisional 99.71
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.65
cd00293130 USP_Like Usp: Universal stress protein family. The 99.64
COG0589154 UspA Universal stress protein UspA and related nuc 99.64
PRK10490 895 sensor protein KdpD; Provisional 98.87
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 98.72
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 97.66
PLN03159832 cation/H(+) antiporter 15; Provisional 97.42
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 96.89
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 96.2
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 95.46
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 92.83
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 92.14
PRK12342254 hypothetical protein; Provisional 92.02
PLN03159 832 cation/H(+) antiporter 15; Provisional 91.89
PRK03359256 putative electron transfer flavoprotein FixA; Revi 91.61
COG0037 298 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle 91.41
COG2086260 FixA Electron transfer flavoprotein, beta subunit 91.23
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 90.42
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 90.16
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 89.3
PRK07313182 phosphopantothenoylcysteine decarboxylase; Validat 88.96
PRK05579 399 bifunctional phosphopantothenoylcysteine decarboxy 87.88
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 86.72
TIGR02113177 coaC_strep phosphopantothenoylcysteine decarboxyla 86.36
PRK08305196 spoVFB dipicolinate synthase subunit B; Reviewed 85.43
TIGR02765 429 crypto_DASH cryptochrome, DASH family. Photolyases 84.61
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 84.11
PRK13820 394 argininosuccinate synthase; Provisional 82.01
PRK10660 436 tilS tRNA(Ile)-lysidine synthetase; Provisional 80.74
PRK10674 472 deoxyribodipyrimidine photolyase; Provisional 80.73
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844100 GARS_N: Phosphoribosylglycinamide synthetase, N do 80.24
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information 
Probab=99.89  E-value=2.3e-22  Score=145.01  Aligned_cols=139  Identities=16%  Similarity=0.135  Sum_probs=105.0

Q ss_pred             CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHHH
Q 030516            4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVEE   83 (176)
Q Consensus         4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   83 (176)
                      |+|++||||+|+|+.+..|+++|..+|+..     +++++++||+++......  .... ...+...+...+..++.+++
T Consensus         1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~-----~a~l~llhV~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~   72 (142)
T PRK09982          1 MAYKHIGVAISGNEEDALLVNKALELARHN-----DAHLTLIHIDDGLSELYP--GIYF-PATEDILQLLKNKSDNKLYK   72 (142)
T ss_pred             CCceEEEEEecCCcchHHHHHHHHHHHHHh-----CCeEEEEEEccCcchhch--hhhc-cchHHHHHHHHHHHHHHHHH
Confidence            569999999999999999999999999983     789999999875432210  0000 01122334445555556666


Q ss_pred             HHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhcccccchhhhheeeccccccccc
Q 030516           84 AKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKSTISCFIWYLIFSRVELGMVNC  157 (176)
Q Consensus        84 ~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~gvs~~~~~~~~~~~~~~~~~~  157 (176)
                      +.+.+.   ...++.++..|+|++.|+++|++.++||||||+| ++++.+++ |+++  ..+--+++||++|+.
T Consensus        73 ~~~~~~---~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~va~--~V~~~s~~pVLvv~~  139 (142)
T PRK09982         73 LTKNIQ---WPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-PAYR--GMINKMSADLLIVPF  139 (142)
T ss_pred             HHHhcC---CCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-HHHH--HHHhcCCCCEEEecC
Confidence            555442   2247788899999999999999999999999987 88899998 5776  667789999999874

>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed Back     alignment and domain information
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13820 argininosuccinate synthase; Provisional Back     alignment and domain information
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query176
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 2e-26
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 4e-24
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 3e-16
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 2e-13
3loq_A 294 Universal stress protein; structural genomics, PSI 2e-13
3loq_A294 Universal stress protein; structural genomics, PSI 1e-07
2z08_A137 Universal stress protein family; uncharacterized c 2e-13
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 2e-12
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 1e-07
3s3t_A146 Nucleotide-binding protein, universal stress PROT 2e-12
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 3e-10
3tnj_A150 Universal stress protein (USP); structural genomic 8e-10
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 1e-09
3dlo_A155 Universal stress protein; unknown function, struct 3e-09
3fg9_A156 Protein of universal stress protein USPA family; A 6e-09
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 7e-09
3mt0_A290 Uncharacterized protein PA1789; structural genomic 2e-08
3olq_A319 Universal stress protein E; structural genomics, P 3e-08
3olq_A 319 Universal stress protein E; structural genomics, P 3e-06
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 7e-08
3fdx_A143 Putative filament protein / universal stress PROT; 1e-06
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score = 98.0 bits (244), Expect = 2e-26
 Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 2   ATAETQTMVVGIDDSEQSTY---------ALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52
           + +E   ++V ++ S    Y         A +WTL+    ++T    FK++++H +    
Sbjct: 1   SGSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNT--SDFKILLLHVQVVDE 58

Query: 53  AVIGLAGP--GAVEVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILC 110
                      + E    +    K     ++E     C    V      +  GD ++++C
Sbjct: 59  DGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGV-GCEAWIKTGDPKDVIC 117

Query: 111 EAVEKHHASILVVGSHGYGAIKR 133
           + V++     LVVGS G G  ++
Sbjct: 118 QEVKRVRPDFLVVGSRGLGRFQK 140
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Length = 163 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Length = 147 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Length = 294 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Length = 137 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Length = 309 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} Length = 146 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Length = 162 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Length = 150 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Length = 170 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Length = 155 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Length = 141 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Length = 290 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Length = 268 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Length = 143 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query176
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.89
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.89
3fg9_A156 Protein of universal stress protein USPA family; A 99.89
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.89
3tnj_A150 Universal stress protein (USP); structural genomic 99.89
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.88
3dlo_A155 Universal stress protein; unknown function, struct 99.86
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.86
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.85
2z08_A137 Universal stress protein family; uncharacterized c 99.85
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.84
3olq_A 319 Universal stress protein E; structural genomics, P 99.83
3fdx_A143 Putative filament protein / universal stress PROT; 99.82
3loq_A 294 Universal stress protein; structural genomics, PSI 99.8
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.8
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.79
3cis_A 309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.77
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.77
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.77
3ab8_A 268 Putative uncharacterized protein TTHA0350; tandem- 99.76
3olq_A319 Universal stress protein E; structural genomics, P 99.75
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.7
3loq_A294 Universal stress protein; structural genomics, PSI 99.69
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.53
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 96.29
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 93.67
1wy5_A 317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 92.31
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 92.26
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 91.39
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 90.77
1np7_A 489 DNA photolyase; protein with FAD cofactor; HET: DN 84.82
3tvs_A 538 Cryptochrome-1; circadian clock light entrainment, 83.93
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.89  E-value=5.8e-23  Score=146.29  Aligned_cols=143  Identities=12%  Similarity=0.151  Sum_probs=113.8

Q ss_pred             CCCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCCCccCCccchhHHHHHHHHHHHH
Q 030516            3 TAETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGPGAVEVLPHVDSDFKKIAARVVE   82 (176)
Q Consensus         3 ~~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   82 (176)
                      .+++++||||+|+|+.+..++++|..+|...     +++|+++|+++++.......    ....+...+...+..++.++
T Consensus         2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~-----~a~l~ll~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~   72 (146)
T 3s3t_A            2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRH-----QANLTALYVVDDSAYHTPAL----DPVLSELLDAEAAHAKDAMR   72 (146)
T ss_dssp             CCCCCEEEEECCSSHHHHHHHHHHHHHHHHH-----TCEEEEEEEEECCCCCCGGG----HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccceEEEEcCCCHHHHHHHHHHHHHHHhc-----CCEEEEEEEecCcccccccc----ccccHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999984     78999999998765321000    00123345666778888888


Q ss_pred             HHHHHhhhcCCcceEEEEEcCChHHHHHH-HHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeecccccccc
Q 030516           83 EAKEICSSKSVHDFVVEVVEGDARNILCE-AVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVELGMVN  156 (176)
Q Consensus        83 ~~~~~~~~~~~~~v~~~v~~G~~~~~I~~-~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~~~~~  156 (176)
                      ++.+.+.+.+..++++.+..|++.+.|++ +++++++||||||+++++.+.++++| +++  ..+.-++.||++|+
T Consensus        73 ~~~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~--~vl~~~~~pVlvV~  146 (146)
T 3s3t_A           73 QRQQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTS--YVVDHAPCNVIVIR  146 (146)
T ss_dssp             HHHHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHH--HHHHHCSSEEEEEC
T ss_pred             HHHHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHH--HHhccCCCCEEEeC
Confidence            88888877663268899999999999999 99999999999999999999998754 555  44556778888774
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 176
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 7e-13
d2z3va1135 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 { 5e-08
d1tq8a_147 c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobac 2e-07
d1mjha_160 c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa 1e-06
d1jmva_140 c.26.2.4 (A:) Universal stress protein A, UspA {Ha 7e-04
d1q77a_138 c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex 0.003
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.4 bits (148), Expect = 7e-13
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 14/136 (10%)

Query: 10  VVGIDDSE---------QSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGP 60
           +V ++ S              A +WTL+    ++T    FK++++H +            
Sbjct: 5   MVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNT--SDFKILLLHVQVVDEDGFDDVDS 62

Query: 61  GAV--EVLPHVDSDFKKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHA 118
                E    +    K     ++E     C           +  GD ++++C+ V++   
Sbjct: 63  IYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEI-GVGCEAWIKTGDPKDVICQEVKRVRP 121

Query: 119 SILVVGSHGYGAIKRY 134
             LVVGS G G  ++ 
Sbjct: 122 DFLVVGSRGLGRFQKV 137
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Length = 135 Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 147 Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160 Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140 Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Length = 138 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query176
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.91
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.89
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.88
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.88
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.85
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.83
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 94.49
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 94.13
d3clsc1262 Small, beta subunit of electron transfer flavoprot 92.51
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 91.97
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 89.83
d1efpb_246 Small, beta subunit of electron transfer flavoprot 88.92
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 88.66
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 84.72
d3bzka5149 Transcriptional accessory factor Tex {Pseudomonas 81.55
d2c5sa1218 Thiamine biosynthesis protein ThiI, C-terminal dom 80.31
d1efvb_252 Small, beta subunit of electron transfer flavoprot 80.05
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.91  E-value=1.9e-24  Score=155.11  Aligned_cols=147  Identities=14%  Similarity=0.097  Sum_probs=113.4

Q ss_pred             CCCCEEEEEecCCHhHHHHHHHHHHHhcccCCCCCCcEEEEEEEecCCCcccCCCCC------CccCC----ccchhHHH
Q 030516            4 AETQTMVVGIDDSEQSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGP------GAVEV----LPHVDSDF   73 (176)
Q Consensus         4 ~~~~~ILVavD~s~~s~~al~~a~~la~~~~~~~~~a~v~lvhv~~~~~~~~~~~~~------~~~~~----~~~~~~~~   73 (176)
                      +||+|||||+|+|+.+.+++++|..+|++.     +++|+++||+++..........      .....    ..++.+..
T Consensus         1 ~m~~~ILvavD~s~~s~~al~~a~~la~~~-----~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (160)
T d1mjha_           1 VMYKKILYPTDFSETAEIALKHVKAFKTLK-----AEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKL   75 (160)
T ss_dssp             CCCCEEEEECCSCHHHHHHHHHHHHTCCSS-----CCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHH
T ss_pred             CCcCeEEEEECCCHHHHHHHHHHHHHHHhc-----CCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHH
Confidence            589999999999999999999999999994     7899999998765432111100      00111    12233455


Q ss_pred             HHHHHHHHHHHHHHhhhcCCcceEEEEEcCChHHHHHHHHHhcCCcEEEEeccCCcccchhccc-ccchhhhheeecccc
Q 030516           74 KKIAARVVEEAKEICSSKSVHDFVVEVVEGDARNILCEAVEKHHASILVVGSHGYGAIKRYKST-ISCFIWYLIFSRVEL  152 (176)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DlIV~Gs~g~~~l~~~l~g-vs~~~~~~~~~~~~~  152 (176)
                      .+.+++.++++.+.+...+. ++++.+..|+|.+.|+++|+++++||||||+|+++++.++|+| +++++  +.-++.||
T Consensus        76 ~~~~~~~l~~~~~~~~~~gv-~~~~~~~~G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~v--l~~s~~pV  152 (160)
T d1mjha_          76 TEEAKNKMENIKKELEDVGF-KVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENV--IKKSNKPV  152 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-EEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHH--HHHCCSCE
T ss_pred             HHHHHHHHHHHHHHHHhcCC-eEEEEEEeccHHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHH--HhcCCCCE
Confidence            56677778888777777664 6899999999999999999999999999999999999999854 66644  56689999


Q ss_pred             cccccc
Q 030516          153 GMVNCF  158 (176)
Q Consensus       153 ~~~~~~  158 (176)
                      ++|++.
T Consensus       153 lvV~~~  158 (160)
T d1mjha_         153 LVVKRK  158 (160)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            999875
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure