Citrus Sinensis ID: 030553

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEEEEccccccccHHHHHEEEEEEEEcccccHHHHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHEEEEEccccHHHHHHHHccccccccccHEEEEcc
Coil and Loop (DISEMBL)
MADNPTEGILEQLRLGVAKFElvsspvasisnpnsqtfptafhrdsnnlffarigpplgggspamkKVERYSVQRVTGDGRCLFRALVKGMALnkgitlnsrderedaafplfftnADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRigrsdfwggeSELLVSTC
Flexible Loop (DISEMBL)
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALnkgitlnsrderedAAFPLFFTNADDLRMAVKEVIcdsgserrqYEEALIAITIDESLKRYCQRIgrsdfwggesellvstc
Low Complexity Region (SEG)
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Disordered region (IsUnstruct)
*********LEQLRLGVAKFELV*****************AFHRDSNNLFFARIGPPLG*******KVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGE********
Disordered Region (DISOPRED)
***********QLRLGVAKFELVS*******************************************VERYSVQRVTGDGRCLFRALVKGMALNKG******************TNADDLRMAVKEVICDS*S**RQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Disordered Region (DISEMBL)
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Disordered Region (DISPRO)
****PTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q8LBZ4	317	OTU domain-containing pro	no	no	0.76	0.419	0.279	8e-05

>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 21/154 (13%)

Query: 22  LVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGR 81
           +VS  V   S   S    ++  +D+NN+           G    +    YS+  + GDGR
Sbjct: 122 IVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGK---RVYTDYSIIGIPGDGR 178

Query: 82  CLFRALVKGMALNKG-ITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEE 140
           CLFR++  G  L  G +    + +RE          AD+LR  V     D   +RRQ  E
Sbjct: 179 CLFRSVAHGFCLRSGKLAPGEKMQRE---------LADELRTRV----ADEFIQRRQETE 225

Query: 141 ALIAITIDESLKRYCQRIGRSDFWGGESELLVST 174
             +    D     Y ++I     WGGE EL +++
Sbjct: 226 WFVEGDFDT----YVRQIRDPHVWGGEPELFMAS 255

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
255573893	162	conserved hypothetical protein [Ricinus	0.914	0.987	0.672	8e-58
356504295	226	PREDICTED: OTU domain-containing protein	0.931	0.721	0.628	7e-53
225440598	226	PREDICTED: uncharacterized protein LOC10	0.88	0.681	0.670	2e-50
388523101	225	unknown [Lotus japonicus]	0.885	0.688	0.649	3e-50
146454972	138	putative auxin-regulated protein [Sonner	0.782	0.992	0.657	3e-47
297827355	233	hypothetical protein ARALYDRAFT_482809 [	0.88	0.660	0.636	3e-47
30687357	234	cysteine proteinase-like protein [Arabid	0.925	0.692	0.607	8e-47
146454974	138	putative auxin-regulated protein [Sonner	0.782	0.992	0.651	9e-47
146454978	138	putative auxin-regulated protein [Sonner	0.782	0.992	0.644	3e-46
357468595	229	OTU-like cysteine protease family protei	0.88	0.672	0.615	5e-45

>gi|255573893|ref|XP_002527865.1| conserved hypothetical protein [Ricinus communis] gi|223532716|gb|EEF34496.1| conserved hypothetical protein [Ricinus communis]

 Score =  228 bits (580), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 135/177 (76%), Gaps = 17/177 (9%)

Query: 1   MADNPT--EGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPL 58
           MA  P   + ILEQL+ GVAKFE+VSSP  SIS        T F   +++ FFARIGP L
Sbjct: 1   MAAKPVNDKNILEQLKHGVAKFEIVSSPDPSISTW------TPFFAHTSHRFFARIGPSL 54

Query: 59  GGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNAD 118
             GSPA KK+ERYSVQ+VTGDGRCLFRALVKGMALNKG++LN R+ER+D         AD
Sbjct: 55  SSGSPATKKLERYSVQKVTGDGRCLFRALVKGMALNKGVSLNPREERDD---------AD 105

Query: 119 DLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLVSTC 175
           DLRMAVKEV+C+   ERRQYEEALIAI++DESLKRYCQRIGR DFWGGESELL  TC
Sbjct: 106 DLRMAVKEVLCNGDKERRQYEEALIAISVDESLKRYCQRIGRPDFWGGESELLECTC 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504295|ref|XP_003520932.1| PREDICTED: OTU domain-containing protein At3g57810-like [Glycine max]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 110/175 (62%), Positives = 129/175 (73%), Gaps = 12/175 (6%)

Query: 1   MADNP---TEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPP 57
           MA  P    E +LEQLR G AKFE+VSSPV S++ P ++        +S+ + FARIG  
Sbjct: 1   MARKPFKFNEDVLEQLRNGTAKFEVVSSPVPSVAAPPNRNTSLFGIGNSSTVLFARIGSS 60

Query: 58  LGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNA 117
            GG SPAMKK+E +SVQ+VTGDGRCLFRALVKGMA NKG TLN R+ERE         NA
Sbjct: 61  FGGHSPAMKKLEHFSVQKVTGDGRCLFRALVKGMAYNKGTTLNQREERE---------NA 111

Query: 118 DDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
           D+LRMAVKE IC++  ER+ YEEALIAIT+DE +KRYCQRI R DFWGGESELLV
Sbjct: 112 DELRMAVKEAICENEGERKLYEEALIAITVDEPIKRYCQRIVRPDFWGGESELLV 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440598|ref|XP_002277660.1| PREDICTED: uncharacterized protein LOC100244154 isoform 1 [Vitis vinifera] gi|297740254|emb|CBI30436.3| unnamed protein product [Vitis vinifera]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 132/167 (79%), Gaps = 13/167 (7%)

Query: 6   TEGILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAM 65
            E +L+QL+ G A+FELVSSPV SIS+P   T  T    ++   FFARIG  LGG SPAM
Sbjct: 9   NEAVLQQLKHGRARFELVSSPVPSISSPKLPTLST----ENGPQFFARIGSSLGGASPAM 64

Query: 66  KKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVK 125
           KKV+RYSVQ+VTGDGRC+FRALVKGMA NKGI ++SR+ER+D         AD+LRMAVK
Sbjct: 65  KKVQRYSVQKVTGDGRCMFRALVKGMAFNKGIAISSREERDD---------ADELRMAVK 115

Query: 126 EVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
           E+IC +G ERRQYEEAL+AIT++ESLKRYCQRI R DFWGGESELLV
Sbjct: 116 EIICGNGKERRQYEEALVAITVEESLKRYCQRIERPDFWGGESELLV 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523101|gb|AFK49612.1| unknown [Lotus japonicus]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/171 (64%), Positives = 128/171 (74%), Gaps = 16/171 (9%)

Query: 6   TEGILEQLRLGVAKFELVS-SPVASIS---NPNSQTFPTAFHRDSNNLFFARIGPPLGGG 61
            E ILEQ+R G AKFELVS SPV SI+   N N+  F      +S++LFFAR+G    G 
Sbjct: 7   NEDILEQMRNGSAKFELVSDSPVPSIAALPNRNASFFGVG---NSSSLFFARVGSLFSGQ 63

Query: 62  SPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLR 121
           SPAMKKVER SV +VTGDGRCLFRALVKGMA NKG+ LN R+ERE         +AD+LR
Sbjct: 64  SPAMKKVERLSVHKVTGDGRCLFRALVKGMAHNKGVALNQREERE---------SADELR 114

Query: 122 MAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
           MAVKEVIC++  ER+ YEEALIAIT+DE L RYC+RI RSDFWGGESELLV
Sbjct: 115 MAVKEVICENEGERKLYEEALIAITVDEPLPRYCKRIVRSDFWGGESELLV 165

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454972|gb|ABQ42152.1| putative auxin-regulated protein [Sonneratia alba] gi|241865252|gb|ACS68704.1| putative auxin-regulated protein [Sonneratia alba] gi|241865485|gb|ACS68775.1| putative auxin-regulated protein [Sonneratia alba]

 Score =  193 bits (490), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 117/149 (78%), Gaps = 12/149 (8%)

Query: 9   ILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKV 68
           IL+QL+ G A+FEL+ SP ASIS   S  +P  F   +++ FFARIG  +GG SPAMKKV
Sbjct: 2   ILQQLKDGTARFELLPSPAASIS---SFKWPRLFSGSNSHRFFARIGSSIGGKSPAMKKV 58

Query: 69  ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVI 128
           E YSVQ+VTGDGRCLFRALVKGMA NKG++L +R+ER+D         AD+LRMAVKE+I
Sbjct: 59  EHYSVQKVTGDGRCLFRALVKGMAFNKGVSLGAREERDD---------ADELRMAVKEII 109

Query: 129 CDSGSERRQYEEALIAITIDESLKRYCQR 157
           CDSG +RRQYEEAL+AITID SLKRYCQR
Sbjct: 110 CDSGEDRRQYEEALVAITIDVSLKRYCQR 138

Source: Sonneratia alba

Species: Sonneratia alba

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827355|ref|XP_002881560.1| hypothetical protein ARALYDRAFT_482809 [Arabidopsis lyrata subsp. lyrata] gi|297327399|gb|EFH57819.1| hypothetical protein ARALYDRAFT_482809 [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 127/168 (75%), Gaps = 14/168 (8%)

Query: 9   ILEQLRLGVAKFELVSSPVASISNPNSQT-FPTAFH---RDSNNLFFARIGPPLGGGSPA 64
           ILEQLR G A+FELVSSP ASIS+  S    P +F    + ++ +FFARIG  +   SPA
Sbjct: 11  ILEQLRNGFARFELVSSPTASISDSISSISLPASFMSATKGNSYVFFARIGSSMNR-SPA 69

Query: 65  MKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAV 124
            KKVE+Y+V RV GDGRCLFRALVKGMA NKG+TLN + ER+DA         D+LRMAV
Sbjct: 70  AKKVEQYAVDRVKGDGRCLFRALVKGMAFNKGVTLNPQRERDDA---------DELRMAV 120

Query: 125 KEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
           KEVIC+   E+ +Y+EAL+AIT+DESLKRYCQRIGR DFWGGESELLV
Sbjct: 121 KEVICNDPKEKEKYKEALVAITVDESLKRYCQRIGRHDFWGGESELLV 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687357|ref|NP_850290.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|26449806|dbj|BAC42026.1| putative auxin-regulated protein [Arabidopsis thaliana] gi|28950787|gb|AAO63317.1| At2g38025 [Arabidopsis thaliana] gi|330254387|gb|AEC09481.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|407078832|gb|AFS88947.1| OTU-containing deubiquitinating enzyme 3 [Arabidopsis thaliana]

 Score =  191 bits (486), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 129/176 (73%), Gaps = 14/176 (7%)

Query: 1   MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQT-FPTAF---HRDSNNLFFARIGP 56
           +  +    ILEQLR G A+FELVSSP AS+S+  S T  P +F    + ++ +FFARI  
Sbjct: 3   LKSSSNNNILEQLRNGFARFELVSSPTASVSDSISSTSLPASFISTTKGNSYVFFARINS 62

Query: 57  PLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTN 116
            +   SPA KKVE+Y+V RV GDGRCLFRALVKGMA NKGITLN + ER+DA        
Sbjct: 63  SMNR-SPAAKKVEKYAVDRVKGDGRCLFRALVKGMAFNKGITLNPQRERDDA-------- 113

Query: 117 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
            D+LRMAVKEVIC+   ER +Y+EAL+AIT+DESLKR+CQRIGR DFWGGESELLV
Sbjct: 114 -DELRMAVKEVICNDPKEREKYKEALVAITVDESLKRFCQRIGRHDFWGGESELLV 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454974|gb|ABQ42153.1| putative auxin-regulated protein [Sonneratia caseolaris]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 117/149 (78%), Gaps = 12/149 (8%)

Query: 9   ILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKV 68
           IL+QL+ G A+FEL+ SP ASIS   S  +P  F   +++ FFARIG  +GG SPAMKKV
Sbjct: 2   ILQQLKDGTARFELLPSPAASIS---SFKWPRLFSGSNSHRFFARIGSSIGGKSPAMKKV 58

Query: 69  ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVI 128
           E YSVQ+VTGDGRCLFRALVKGMA NKG++L++ +ER+D         AD+LRMAVKE+I
Sbjct: 59  EHYSVQKVTGDGRCLFRALVKGMAFNKGVSLSTWEERDD---------ADELRMAVKEII 109

Query: 129 CDSGSERRQYEEALIAITIDESLKRYCQR 157
           CDSG +RRQYEEAL+AITID SLKRYCQR
Sbjct: 110 CDSGEDRRQYEEALVAITIDVSLKRYCQR 138

Source: Sonneratia caseolaris

Species: Sonneratia caseolaris

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454978|gb|ABQ42155.1| putative auxin-regulated protein [Sonneratia apetala]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 117/149 (78%), Gaps = 12/149 (8%)

Query: 9   ILEQLRLGVAKFELVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKV 68
           IL+QL+ G A+FEL+ SP ASIS   S  +P  F   +++ FFARIG  +GG  PAMKKV
Sbjct: 2   ILQQLKDGTARFELLPSPAASIS---SFKWPRLFSGSNSHRFFARIGSSIGGKPPAMKKV 58

Query: 69  ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVI 128
           E YSVQ+VTGDGRCLFRALVKGMA NKG++L++R+ER+D         AD+LRMAVKE+I
Sbjct: 59  EHYSVQKVTGDGRCLFRALVKGMAFNKGVSLSTREERDD---------ADELRMAVKEII 109

Query: 129 CDSGSERRQYEEALIAITIDESLKRYCQR 157
           CDSG ++RQYEEAL+AITID SLKRYCQR
Sbjct: 110 CDSGEDQRQYEEALVAITIDVSLKRYCQR 138

Source: Sonneratia apetala

Species: Sonneratia apetala

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468595|ref|XP_003604582.1| OTU-like cysteine protease family protein expressed [Medicago truncatula] gi|355505637|gb|AES86779.1| OTU-like cysteine protease family protein expressed [Medicago truncatula] gi|388501534|gb|AFK38833.1| unknown [Medicago truncatula]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 128/169 (75%), Gaps = 15/169 (8%)

Query: 7   EGILEQLRLGVAKFELVSSPVASIS---NPNSQTFPTAFHRDSNNLFFARIGPPLGGGSP 63
           + IL+QL+ G AKFE+VSSPVAS+    N NS  F      + +  FFARIG  +GG S 
Sbjct: 13  DNILKQLKDGTAKFEIVSSPVASVVSRFNRNSSLFGVG---NCSTHFFARIGSSIGGQST 69

Query: 64  AMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMA 123
           AMKK+ER+SVQ+VTGDGRCLFRALVKGMA NKG+ LN R+ERE         NAD+LRMA
Sbjct: 70  AMKKLERFSVQKVTGDGRCLFRALVKGMAHNKGMALNQREERE---------NADELRMA 120

Query: 124 VKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
           VKE IC++  +R+ YEEA+IA+T+DE L+RYC+RIG+ DFWGGESELLV
Sbjct: 121 VKEAICENVGDRKLYEEAIIAVTVDEPLQRYCRRIGQPDFWGGESELLV 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:504955906	234	AT2G38025 "AT2G38025" [Arabido	0.925	0.692	0.607	2.6e-47
TAIR|locus:2095748	317	AT3G57810 "AT3G57810" [Arabido	0.754	0.416	0.290	0.0005

TAIR|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 107/176 (60%), Positives = 129/176 (73%)

Query:     1 MADNPTEGILEQLRLGVAKFELVSSPVASISNPNSQT-FPTAF---HRDSNNLFFARIGP 56
             +  +    ILEQLR G A+FELVSSP AS+S+  S T  P +F    + ++ +FFARI  
Sbjct:     3 LKSSSNNNILEQLRNGFARFELVSSPTASVSDSISSTSLPASFISTTKGNSYVFFARINS 62

Query:    57 PLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTN 116
              +   SPA KKVE+Y+V RV GDGRCLFRALVKGMA NKGITLN + ER+DA        
Sbjct:    63 SMNR-SPAAKKVEKYAVDRVKGDGRCLFRALVKGMAFNKGITLNPQRERDDA-------- 113

Query:   117 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
              D+LRMAVKEVIC+   ER +Y+EAL+AIT+DESLKR+CQRIGR DFWGGESELLV
Sbjct:   114 -DELRMAVKEVICNDPKEREKYKEALVAITVDESLKRFCQRIGRHDFWGGESELLV 168

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 0.00050, P = 0.00050
 Identities = 45/155 (29%), Positives = 67/155 (43%)

Query:    22 LVSSPVASISNPNSQTFPTAFHRDSNNLFFARIGPPLGGGSPAMKKVER-YSVQRVTGDG 80
             +VS  V   S   S    ++  +D+NN+           G    K+V   YS+  + GDG
Sbjct:   122 IVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNG----KRVYTDYSIIGIPGDG 177

Query:    81 RCLFRALVKGMALNKG-ITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYE 139
             RCLFR++  G  L  G +    + +RE          AD+LR  V     D   +RRQ  
Sbjct:   178 RCLFRSVAHGFCLRSGKLAPGEKMQRE---------LADELRTRV----ADEFIQRRQET 224

Query:   140 EALIAITIDESLKRYCQRIGRSDFWGGESELLVST 174
             E  +    D     Y ++I     WGGE EL +++
Sbjct:   225 EWFVEGDFDT----YVRQIRDPHVWGGEPELFMAS 255


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      175       175   0.00078  109 3  11 22  0.40    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  141 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.46u 0.16s 15.62t   Elapsed:  00:00:01
  Total cpu time:  15.46u 0.16s 15.62t   Elapsed:  00:00:01
  Start:  Sat May 11 05:37:47 2013   End:  Sat May 11 05:37:48 2013

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.92
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.72
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.68
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	98.94
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.72
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.51
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	97.72
KOG3991	256	consensus Uncharacterized conserved protein [Funct	97.42

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=9.1e-26  Score=196.72  Aligned_cols=96  Identities=22%  Similarity=0.451  Sum_probs=81.8

Q ss_pred             Cchhhhhc---cCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchh
Q 030553           61 GSPAMKKV---ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQ  137 (175)
Q Consensus        61 ~~~~~~k~---~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~  137 (175)
                      +....+++   ++|.+++||+||||||+||+|||..+++..++                +..||...|+||+   .|.++
T Consensus       146 E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~----------------v~kLR~~~a~Ymr---~H~~d  206 (302)
T KOG2606|consen  146 EKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLS----------------VQKLREETADYMR---EHVED  206 (302)
T ss_pred             HHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCc----------------HHHHHHHHHHHHH---HHHHH
Confidence            34444444   69999999999999999999999998765443                8899999999998   58999


Q ss_pred             hHHHHHhh-----hhhhhHHHHHHhhcCCCcccchHhHhhccC
Q 030553          138 YEEALIAI-----TIDESLKRYCQRIGRSDFWGGESELLVSTC  175 (175)
Q Consensus       138 f~efl~~~-----~~ee~fdeYC~~I~~t~~WGGeiEL~ALS~  175 (175)
                      |.+|+...     ...++|++||+.|++|+.|||+|||.|||+
T Consensus       207 f~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlSh  249 (302)
T KOG2606|consen  207 FLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSH  249 (302)
T ss_pred             hhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHH
Confidence            99999742     224589999999999999999999999995

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.72  E-value=1e-17  Score=124.95  Aligned_cols=68  Identities=35%  Similarity=0.662  Sum_probs=55.4

Q ss_pred             CCCCchhhHHHHHHHHhccC-CCCCCccccccccCCcccchHHHHHHHHHHHHh-hccCCchhhHHHHHhhhhhhhHHHH
Q 030553           77 TGDGRCLFRALVKGMALNKG-ITLNSRDEREDAAFPLFFTNADDLRMAVKEVIC-DSGSERRQYEEALIAITIDESLKRY  154 (175)
Q Consensus        77 p~DG~CLFrAIadQL~~~~g-~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~-~~~~~r~~f~efl~~~~~ee~fdeY  154 (175)
                      |+|||||||||++||...++ ..       .         .+.+||+.+++||. .   +++.|.+++.    ++     
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~-------~---------~~~~lR~~~~~~l~~~---~~~~~~~~~~----~~-----   52 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSE-------D---------NHQELRKAVVDYLRDK---NRDKFEEFLE----GD-----   52 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSST-------T---------THHHHHHHHHHHHHTH---TTTHHHHHHH----HH-----
T ss_pred             CCCccHHHHHHHHHHHHhcCCCH-------H---------HHHHHHHHHHHHHHHh---ccchhhhhhh----hh-----
Confidence            79999999999999975432 11       1         28899999999997 4   7899999872    22     


Q ss_pred             HHhhcCCCcccchHhHhhcc
Q 030553          155 CQRIGRSDFWGGESELLVST  174 (175)
Q Consensus       155 C~~I~~t~~WGGeiEL~ALS  174 (175)
                        +|+++++|||++||+|||
T Consensus        53 --~~~~~~~Wg~~~el~a~a   70 (121)
T PF02338_consen   53 --KMSKPGTWGGEIELQALA   70 (121)
T ss_dssp             --HHTSTTSHEEHHHHHHHH
T ss_pred             --hhccccccCcHHHHHHHH
Confidence              999999999999999997

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=2.1e-17  Score=142.99  Aligned_cols=80  Identities=28%  Similarity=0.471  Sum_probs=68.7

Q ss_pred             cEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhh
Q 030553           71 YSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDES  150 (175)
Q Consensus        71 L~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~  150 (175)
                      +..+-||+|++|||+||++.|....+..                  ..+||+++|..+.   ++++.|.+++    ++++
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~------------------~~elR~iiA~~Va---snp~~yn~Ai----LgK~  164 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVSNR------------------PYELREIIAQEVA---SNPDKYNDAI----LGKP  164 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccCCC------------------cHHHHHHHHHHHh---cChhhhhHHH----hCCC
Confidence            6677899999999999999775321110                  3599999999887   5899999998    7899


Q ss_pred             HHHHHHhhcCCCcccchHhHhhccC
Q 030553          151 LKRYCQRIGRSDFWGGESELLVSTC  175 (175)
Q Consensus       151 fdeYC~~I~~t~~WGGeiEL~ALS~  175 (175)
                      ..+||.||++...|||.|||.+||.
T Consensus       165 n~eYc~WI~k~dsWGGaIElsILS~  189 (307)
T KOG3288|consen  165 NKEYCAWILKMDSWGGAIELSILSD  189 (307)
T ss_pred             cHHHHHHHccccccCceEEeeeehh
Confidence            9999999999999999999999984

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=2.3e-10  Score=103.41  Aligned_cols=81  Identities=28%  Similarity=0.400  Sum_probs=70.2

Q ss_pred             hccCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhh
Q 030553           67 KVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAIT  146 (175)
Q Consensus        67 k~~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~  146 (175)
                      ++.|+.++.|..||+|+|||++||++..        .+           .++..|++++|++.   .+++.|+.+     
T Consensus       214 ~~~g~e~~Kv~edGsC~fra~aDQvy~d--------~e-----------~~~~~~~~~~dq~~---~e~~~~~~~-----  266 (371)
T KOG2605|consen  214 KHFGFEYKKVVEDGSCLFRALADQVYGD--------DE-----------QHDHNRRECVDQLK---KERDFYEDY-----  266 (371)
T ss_pred             HHhhhhhhhcccCCchhhhccHHHhhcC--------HH-----------HHHHHHHHHHHHHh---hcccccccc-----
Confidence            3468999999999999999999999853        11           26799999999996   478888887     


Q ss_pred             hhhhHHHHHHhhcCCCcccchHhHhhcc
Q 030553          147 IDESLKRYCQRIGRSDFWGGESELLVST  174 (175)
Q Consensus       147 ~ee~fdeYC~~I~~t~~WGGeiEL~ALS  174 (175)
                      +.++|-+|.++++....||-++|++|++
T Consensus       267 vt~~~~~y~k~kr~~~~~gnhie~Qa~a  294 (371)
T KOG2605|consen  267 VTEDFTSYIKRKRADGEPGNHIEQQAAA  294 (371)
T ss_pred             cccchhhcccccccCCCCcchHHHhhhh
Confidence            4688999999999999999999999986

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.3e-09  Score=95.88  Aligned_cols=87  Identities=8%  Similarity=0.011  Sum_probs=62.6

Q ss_pred             cEEEEeCCCCchhhHHHHHHHHhccC-CCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhh--
Q 030553           71 YSVQRVTGDGRCLFRALVKGMALNKG-ITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITI--  147 (175)
Q Consensus        71 L~I~eIp~DG~CLFrAIadQL~~~~g-~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~--  147 (175)
                      +.-.++++||+|+|.+|+|||..+.- ..++               ....+|-.-..|..   .+...|+.+..+...  
T Consensus       171 i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~---------------~~~~dr~~~~~~~q---~~~i~f~g~hfD~~t~~  232 (306)
T COG5539         171 IVKPDSQGDGCIEIAIISDQLPVRIHVVDVD---------------KDSEDRYNSHPYVQ---RISILFTGIHFDEETLA  232 (306)
T ss_pred             hhccccCCCceEEEeEeccccceeeeeeecc---------------hhHHhhccCChhhh---hhhhhhcccccchhhhh
Confidence            34466899999999999999976521 1111               13466666666664   356777776543222  


Q ss_pred             hhhHHHHHHhhcCCCcccchHhHhhccC
Q 030553          148 DESLKRYCQRIGRSDFWGGESELLVSTC  175 (175)
Q Consensus       148 ee~fdeYC~~I~~t~~WGGeiEL~ALS~  175 (175)
                      --+|++||+.|+.++.||+.||+++|++
T Consensus       233 m~~~dt~~ne~~~~a~~g~~~ei~qLas  260 (306)
T COG5539         233 MVLWDTYVNEVLFDASDGITIEIQQLAS  260 (306)
T ss_pred             cchHHHHHhhhcccccccchHHHHHHHH
Confidence            2479999999999999999999999974

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.3e-07  Score=83.44  Aligned_cols=74  Identities=22%  Similarity=0.233  Sum_probs=62.4

Q ss_pred             EEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHH
Q 030553           74 QRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKR  153 (175)
Q Consensus        74 ~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fde  153 (175)
                      ....+|.+|+|+++.+.+...                     ...+||..|+--+.   ++++.|.+++    .+.+--.
T Consensus       115 ~p~~~d~srl~q~~~~~l~~a---------------------sv~~lrE~vs~Ev~---snPDl~n~~i----~~~~~i~  166 (306)
T COG5539         115 MPGQDDNSRLFQAERYSLRDA---------------------SVAKLREVVSLEVL---SNPDLYNPAI----LEIDVIA  166 (306)
T ss_pred             CCCCCchHHHHHHHHhhhhhh---------------------hHHHHHHHHHHHHh---hCccccchhh----cCcchHH
Confidence            334489999999999965321                     27899999998886   5899999998    6777889


Q ss_pred             HHHhhcCCCccc-chHhHhhccC
Q 030553          154 YCQRIGRSDFWG-GESELLVSTC  175 (175)
Q Consensus       154 YC~~I~~t~~WG-GeiEL~ALS~  175 (175)
                      ||.||.+...|| |.+|+-+||.
T Consensus       167 y~~~i~k~d~~~dG~ieia~iS~  189 (306)
T COG5539         167 YATWIVKPDSQGDGCIEIAIISD  189 (306)
T ss_pred             HHHhhhccccCCCceEEEeEecc
Confidence            999999999999 9999999984

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.72  E-value=3.5e-05  Score=64.95  Aligned_cols=53  Identities=11%  Similarity=0.202  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHH-HhhcCCCcccchHhHhhcc
Q 030553          118 DDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYC-QRIGRSDFWGGESELLVST  174 (175)
Q Consensus       118 ~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC-~~I~~t~~WGGeiEL~ALS  174 (175)
                      -.||-.++.||+.   |.+.|.+|+.+.. ..++++|| +.|...+.=.+++.+.||+
T Consensus       140 ~flRLlts~~l~~---~~d~y~~fi~~~~-~~tve~~C~~~Vep~~~Ead~v~i~ALa  193 (244)
T PF10275_consen  140 IFLRLLTSAYLKS---NSDEYEPFIDGLE-YLTVEEFCSQEVEPMGKEADHVQIIALA  193 (244)
T ss_dssp             HHHHHHHHHHHHH---THHHHGGGSSTT---S-HHHHHHHHTSSTT--B-HHHHHHHH
T ss_pred             HHHHHHHHHHHHh---hHHHHhhhhcccc-cCCHHHHHHhhcccccccchhHHHHHHH
Confidence            3678888889984   6788888862111 27899999 4566666777899999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=9e-05  Score=64.04  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHHhhcCC-CcccchHhHhhccC
Q 030553          117 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRS-DFWGGESELLVSTC  175 (175)
Q Consensus       117 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~~I~~t-~~WGGeiEL~ALS~  175 (175)
                      +..||-.++-+|+   .+.+.|.+|+   +-+.+.++||+.=-.| ..=-|+|+|-|||+
T Consensus       156 V~ylRLvtS~~ik---~~adfy~pFI---~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~  209 (256)
T KOG3991|consen  156 VMYLRLVTSGFIK---SNADFYQPFI---DEGMTVKAFCTQEVEPMYKESDHIHITALSQ  209 (256)
T ss_pred             HHHHHHHHHHHHh---hChhhhhccC---CCCCcHHHHHHhhcchhhhccCceeHHHHHh
Confidence            5678888999998   4678888886   2357899999864443 44567899999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	3e-13
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-12
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	1e-09
3pfy_A	185	OTU domain-containing protein 5; structural genomi	3e-04

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 63.5 bits (154), Expect = 3e-13
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 23/126 (18%)

Query: 47  NNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDERE 106
            +L + ++       +P     + + + R  GDG C + ++                   
Sbjct: 7   RSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSI------------------- 47

Query: 107 DAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGG 166
             A        D     +K +     + R+ Y+E   A  +  SL+ Y +R+   + WG 
Sbjct: 48  --AELTMPNKTDHSYHYIKRLTES--AARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGS 103

Query: 167 ESELLV 172
             E  +
Sbjct: 104 TLEASM 109

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 23/126 (18%)

Query: 47  NNLFFARIGPPLGGGSPAMKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDERE 106
            +L + ++       +P     + + + R  GDG C + ++                   
Sbjct: 7   RSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSI------------------- 47

Query: 107 DAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGG 166
             A        D     +K +     + R+ Y+E   A  +  SL+ Y +R+   + WG 
Sbjct: 48  --AELTMPNKTDHSYHYIKRLTES--AARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGS 103

Query: 167 ESELLV 172
             E  +
Sbjct: 104 TLEASM 109

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 27/100 (27%)

Query: 73  VQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSG 132
           V  V  D  CLF A+  G+                        +  DLR  V + +    
Sbjct: 22  VHPVLDDNSCLFHAIAYGIFKQD--------------------SVRDLREMVSKEVL--- 58

Query: 133 SERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
           +   ++ +A     +D+  K Y Q I + + WGG  E+ +
Sbjct: 59  NNPVKFNDA----ILDKPNKDYAQWILKMESWGGAIEIGI 94

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 27/102 (26%)

Query: 71  YSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICD 130
           + ++++  DG CLFRA+   +  ++                      + +R    + +  
Sbjct: 59  FIIKQMKEDGACLFRAVADQVYGDQ-------------------DMHEVVRKHCMDYLM- 98

Query: 131 SGSERRQYEEALIAITIDESLKRYCQRIGRSDFWGGESELLV 172
                  +        + E    Y  R  +++  G   E+  
Sbjct: 99  --KNADYFSN-----YVTEDFTTYINRKRKNNCHGNHIEMQA 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.91
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.91
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.87
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.86
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.55
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.27
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.27
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.17
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	96.2
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	81.82

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.91  E-value=3.3e-25  Score=183.72  Aligned_cols=80  Identities=29%  Similarity=0.524  Sum_probs=70.5

Q ss_pred             cCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhh
Q 030553           69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITID  148 (175)
Q Consensus        69 ~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~e  148 (175)
                      .+|.+++||+|||||||||++|| ..  ..        .         +.+||+.|++||+.   |++.|.||+    ++
T Consensus        18 ~~l~~~~i~~DGnCLFrAva~qL-~~--~~--------~---------~~~lR~~vv~yi~~---n~d~f~e~~----~~   70 (212)
T 3by4_A           18 NVLSVHPVLDDNSCLFHAIAYGI-FK--QD--------S---------VRDLREMVSKEVLN---NPVKFNDAI----LD   70 (212)
T ss_dssp             SEEEEECCCCSTTHHHHHHHHHH-HS--SC--------C---------SHHHHHHHHHHHHH---CTTTTCHHH----HT
T ss_pred             CCeEEEEeCCCCchHHHHHHHHh-CC--ch--------H---------HHHHHHHHHHHHHH---CHHHHhhhh----cC
Confidence            36999999999999999999999 32  10        1         67999999999984   789998887    67


Q ss_pred             hhHHHHHHhhcCCCcccchHhHhhccC
Q 030553          149 ESLKRYCQRIGRSDFWGGESELLVSTC  175 (175)
Q Consensus       149 e~fdeYC~~I~~t~~WGGeiEL~ALS~  175 (175)
                      ++|++||++|+++++|||+|||+|||.
T Consensus        71 ~~~e~Y~~~m~~~~~WGg~iEL~Als~   97 (212)
T 3by4_A           71 KPNKDYAQWILKMESWGGAIEIGIISD   97 (212)
T ss_dssp             SCHHHHHHHTTSTTSCCCHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCCEEccHHHHHHHHH
Confidence            899999999999999999999999983

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.91  E-value=2.1e-25  Score=182.32  Aligned_cols=80  Identities=16%  Similarity=0.363  Sum_probs=54.9

Q ss_pred             cCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhh
Q 030553           69 ERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITID  148 (175)
Q Consensus        69 ~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~e  148 (175)
                      .||.+++||+|||||||||++||....          .         .+.+||+.|++||+   +|++.|.+|+     +
T Consensus        57 ~gL~~~~I~~DGnCLFrAia~qL~g~~----------~---------~h~~LR~~vv~yi~---~n~d~f~~Fv-----~  109 (185)
T 3pfy_A           57 KGFIIKQMKEDGACLFRAVADQVYGDQ----------D---------MHEVVRKHCMDYLM---KNADYFSNYV-----T  109 (185)
T ss_dssp             HCCEEECCCCSTTHHHHHHHHHHHSCG----------G---------GHHHHHHHHHHHHH---HTHHHHTTCC------
T ss_pred             CCcEEEeeCCCCChHHHHHHHHHhCCc----------h---------HHHHHHHHHHHHHH---HHHHHHHHHH-----h
Confidence            699999999999999999999997421          1         27899999999998   4899999884     6


Q ss_pred             hhHHHHHHhhcCCCcccchHhHhhccC
Q 030553          149 ESLKRYCQRIGRSDFWGGESELLVSTC  175 (175)
Q Consensus       149 e~fdeYC~~I~~t~~WGGeiEL~ALS~  175 (175)
                      ++|++||++|+++++|||+|||+|||.
T Consensus       110 ~~~e~Y~~~m~~~~~WGg~iEL~AlS~  136 (185)
T 3pfy_A          110 EDFTTYINRKRKNNCHGNHIEMQAMAE  136 (185)
T ss_dssp             ----------------CCHHHHHHHHH
T ss_pred             ccHHHHHHHhhCCCccchHHHHHHHHH
Confidence            789999999999999999999999983

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.87  E-value=5.6e-23  Score=167.47  Aligned_cols=88  Identities=18%  Similarity=0.300  Sum_probs=69.5

Q ss_pred             hhhccCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHh
Q 030553           65 MKKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIA  144 (175)
Q Consensus        65 ~~k~~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~  144 (175)
                      +....++.|++||+|||||||||++||...  .  ...+++.         .+.+||+.|++||+.   |+++   ++  
T Consensus        25 ~~~~~~~~v~rv~gDGnCLFrAva~qL~~~--~--~~~~~~~---------~~~~LR~~~~~yi~~---~~~~---~~--   83 (185)
T 3phx_A           25 FNISDYFEIVRQPGDGNCFYHSIAELTMPN--K--TDHSYHY---------IKRLTESAARKYYQE---EPEA---RL--   83 (185)
T ss_dssp             CBHHHHEEEECCCSSTTHHHHHHHHHHSTT--C--CTTTHHH---------HHHHHHHHHHHHGGG---CTTH---HH--
T ss_pred             cccccCeEEEccCCCCchHHHHHHHHHhCC--C--ccchhhh---------HHHHHHHHHHHHHHh---ChHh---hh--
Confidence            333456999999999999999999998642  0  1111122         278999999999984   5666   43  


Q ss_pred             hhhhhhHHHHHHhhcCCCcccchHhHhhccC
Q 030553          145 ITIDESLKRYCQRIGRSDFWGGESELLVSTC  175 (175)
Q Consensus       145 ~~~ee~fdeYC~~I~~t~~WGGeiEL~ALS~  175 (175)
                        .+++|++||++|+++++|||++||+|||.
T Consensus        84 --~~~~~~~Y~~~m~~~~~WGg~iEL~Als~  112 (185)
T 3phx_A           84 --VGLSLEDYLKRMLSDNEWGSTLEASMLAK  112 (185)
T ss_dssp             --HCCCHHHHHHHHTSTTCCCBHHHHHHHHH
T ss_pred             --cCCCHHHHHHHhhCCCccCcHHHHHHHHH
Confidence              58899999999999999999999999973

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.86  E-value=2.1e-22  Score=168.44  Aligned_cols=87  Identities=21%  Similarity=0.325  Sum_probs=68.9

Q ss_pred             hhccCcEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhh
Q 030553           66 KKVERYSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAI  145 (175)
Q Consensus        66 ~k~~gL~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~  145 (175)
                      ....+|.|++||+|||||||||++||....  .  ..+.+.         .+.+||+.|++||+.   |+++   ++   
T Consensus        26 ~~~~~~~V~rvpgDGnCLFrAVs~qL~~~~--~--~~~~~~---------~h~~LR~~va~yi~~---n~d~---~~---   83 (219)
T 3phu_A           26 NISDYFEIVRQPGDGNCFYHSIAELTMPNK--T--DHSYHY---------IKRLTESAARKYYQE---EPEA---RL---   83 (219)
T ss_dssp             BHHHHEEEECCCCSSCHHHHHHHHHHCTTC--C--TTTHHH---------HHHHHHHHHHHHGGG---CHHH---HH---
T ss_pred             ccccceEEEccCCCCchHHHHHHHHHhCCC--c--cchhhh---------HHHHHHHHHHHHHHh---Chhh---hh---
Confidence            333568999999999999999999995421  1  111122         278999999999984   6666   43   


Q ss_pred             hhhhhHHHHHHhhcCCCcccchHhHhhccC
Q 030553          146 TIDESLKRYCQRIGRSDFWGGESELLVSTC  175 (175)
Q Consensus       146 ~~ee~fdeYC~~I~~t~~WGGeiEL~ALS~  175 (175)
                       .+++|++||++|+++++|||++||+|||.
T Consensus        84 -~~~~feeY~~~m~~~g~WGG~iEL~AlS~  112 (219)
T 3phu_A           84 -VGLSLEDYLKRMLSDNEWGSTLEASMLAK  112 (219)
T ss_dssp             -HCCCHHHHHHHHHSTTCCCCHHHHHHHHH
T ss_pred             -cCCCHHHHHHHhcCCCccCCHHHHHHHHH
Confidence             58899999999999999999999999973

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.55  E-value=2.1e-15  Score=126.49  Aligned_cols=53  Identities=9%  Similarity=0.132  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCcccchHhHhhccC
Q 030553          117 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVSTC  175 (175)
Q Consensus       117 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~-~I~~t~~WGGeiEL~ALS~  175 (175)
                      +..||..++.||+   .|+++|.+|+.   .+.+|++||+ .|+.+++|||++||+|||.
T Consensus       132 v~~lR~lta~~i~---~~~d~f~pFi~---~~~~~~~yC~~~ve~~~~~~~~iei~ALa~  185 (234)
T 1tff_A          132 VQFLRLLTSAFIR---NRADFFRHFID---EEMDIKDFCTHEVEPMATECDHIQITALSQ  185 (234)
T ss_dssp             HHHHHHHHHHHHH---HTHHHHGGGSC---TTSCHHHHHHHHTSSTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HCHHHHhhhhc---CCCCHHHHHHHHhhhhhcccccHHHHHHHH
Confidence            5679999999998   47999999962   1248999999 8999999999999999973

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.27  E-value=2e-12  Score=111.88  Aligned_cols=52  Identities=10%  Similarity=0.070  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCcccchHhHhhcc
Q 030553          117 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVST  174 (175)
Q Consensus       117 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~-~I~~t~~WGGeiEL~ALS  174 (175)
                      +..||.+++.||+   .|+++|.+|+.   .+.++++||+ +|+.++.|||++||+|||
T Consensus       170 v~~LRllts~yi~---~~~d~f~pFi~---~~~~v~~yC~~eVe~~~~e~d~leI~ALa  222 (284)
T 4dhi_B          170 LMFFRLITSAFLK---QNSEEYAPFID---EGMTVAQYCEQEIEPMWKDADHLAINSLI  222 (284)
T ss_dssp             HHHHHHHHHHHHH---HTHHHHGGGSC---TTCCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HCHHHHHhhcC---CCCCHHHHHHHhceehhhcccHHHHHHHH
Confidence            5678999999998   58999999972   1358999999 899999999999999997

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.27  E-value=2.8e-12  Score=114.18  Aligned_cols=52  Identities=13%  Similarity=0.188  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHH-hhcCCCcccchHhHhhcc
Q 030553          117 ADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-RIGRSDFWGGESELLVST  174 (175)
Q Consensus       117 a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~-~I~~t~~WGGeiEL~ALS  174 (175)
                      +..||.+++.||+   .|+++|.+|+.   .+.++++||+ .|+.++.|||++||+||+
T Consensus       300 v~~lRllts~~i~---~~~d~f~pFi~---~~~~v~~yc~~~ve~~~~e~d~l~I~ALa  352 (399)
T 4ddg_A          300 VVYLRLLTSGYLQ---RESKFFEHFIE---GGRTVKEFCQQEVEPMCKESDHIHIIALA  352 (399)
T ss_dssp             HHHHHHHHHHHHH---HTHHHHGGGSS---SSCCHHHHHHHHTSSTTCCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---HCHHHHhcccC---CCCCHHHHHHHhceeHHhhCcHHHHHHHH
Confidence            5679999999998   48999999962   2347999999 999999999999999997

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.17  E-value=5.9e-12  Score=105.30  Aligned_cols=72  Identities=11%  Similarity=0.087  Sum_probs=60.5

Q ss_pred             CCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHH-
Q 030553           78 GDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQ-  156 (175)
Q Consensus        78 ~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~-  156 (175)
                      .||+||++++.+|+...           .         .+..||..++.||+   .|+++|.+|+.   .+.+|++||. 
T Consensus       116 ~~~~~L~~~fndq~~s~-----------~---------~v~~lR~lta~yi~---~~~d~f~pFi~---~~~~~e~yc~~  169 (234)
T 2zfy_A          116 TSVADLLASFNDQSTSD-----------Y---------LVVYLRLLTSGYLQ---RESKFFEHFIE---GGRTVKEFCQQ  169 (234)
T ss_dssp             CCHHHHHHHHTSHHHHH-----------H---------HHHHHHHHHHHHHH---HTHHHHGGGCC---SSCCHHHHHHH
T ss_pred             CCHHHHHHHHHhhccch-----------H---------HHHHHHHHHHHHHH---HCHHHHhcccC---CCCCHHHHHHH
Confidence            39999999999997422           1         17899999999998   48999999862   2348999997 


Q ss_pred             hhcCCCcccchHhHhhccC
Q 030553          157 RIGRSDFWGGESELLVSTC  175 (175)
Q Consensus       157 ~I~~t~~WGGeiEL~ALS~  175 (175)
                      .|+.+++|||++||+|||.
T Consensus       170 ~ve~~~~~~~~i~i~ALa~  188 (234)
T 2zfy_A          170 EVEPMCKESDHIHIIALAQ  188 (234)
T ss_dssp             HTSSTTCCCCHHHHHHHHH
T ss_pred             HhhhHhhcCCHHHHHHHHH
Confidence            5999999999999999973

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=96.20  E-value=0.01  Score=49.17  Aligned_cols=24  Identities=25%  Similarity=0.582  Sum_probs=20.1

Q ss_pred             Cc-EEEEeCCCCchhhHHHHHHHHh
Q 030553           70 RY-SVQRVTGDGRCLFRALVKGMAL   93 (175)
Q Consensus        70 gL-~I~eIp~DG~CLFrAIadQL~~   93 (175)
                      .+ .+++|.|||||.|||++.+...
T Consensus        41 ~y~~~R~vRgDGNCFyRaf~f~ylE   65 (234)
T 2zfy_A           41 KYSYIRKTRPDGNCFYRAFGFSHLE   65 (234)
T ss_dssp             TCCEEECBCCSSCHHHHHHHHHHHH
T ss_pred             hccceeeccCCccHHHHHHHHHHHH
Confidence            44 5677999999999999998754

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=81.82  E-value=1.4  Score=39.57  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             cEEEEeCCCCchhhHHHHHHHHhccCCCCCCccccccccCCcccchHHHHHHHHHHHHhh
Q 030553           71 YSVQRVTGDGRCLFRALVKGMALNKGITLNSRDEREDAAFPLFFTNADDLRMAVKEVICD  130 (175)
Q Consensus        71 L~I~eIp~DG~CLFrAIadQL~~~~g~~~~~~~er~~~~~~~~~~~a~eLR~~vad~I~~  130 (175)
                      |.-....||||||..|++-.|.....        +           .--||+...+.|..
T Consensus       112 L~pL~t~GDGnCLLHAvSqamWGv~D--------r-----------dlvLRkaL~~~L~~  152 (390)
T 3dkb_A          112 LVALKTNGDGNCLMHATSQYMWGVQD--------T-----------DLVLRKALFSTLKE  152 (390)
T ss_dssp             EEEBCCCCSSCHHHHHHHHHHHSSCS--------T-----------TCHHHHHHHHHHHH
T ss_pred             eEEEEecCCCchHHHHHhHHhcCCCC--------H-----------hHHHHHHHHHHHHh
Confidence            55566789999999999998874311        1           33889999988875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.35

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3e-13  Score=109.91  Aligned_cols=51  Identities=10%  Similarity=0.186  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHhhccCCchhhHHHHHhhhhhhhHHHHHHh-hcCCCcccchHhHhhcc
Q 030553          118 DDLRMAVKEVICDSGSERRQYEEALIAITIDESLKRYCQR-IGRSDFWGGESELLVST  174 (175)
Q Consensus       118 ~eLR~~vad~I~~~~~~r~~f~efl~~~~~ee~fdeYC~~-I~~t~~WGGeiEL~ALS  174 (175)
                      ..||.+++.||+.   +++.|.+|+   +.+.++++||.+ |..+++|||++||.|||
T Consensus       127 ~~lR~l~s~~i~~---~~~~y~~Fi---~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa  178 (228)
T d1tffa_         127 QFLRLLTSAFIRN---RADFFRHFI---DEEMDIKDFCTHEVEPMATECDHIQITALS  178 (228)
T ss_dssp             HHHHHHHHHHHHH---THHHHGGGS---CTTSCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---CHHHHHhHh---cCCccHHHHHHHHHccccccCCcHHHHHHH
Confidence            4579999999984   789999886   234679999986 89999999999999997