Citrus Sinensis ID: 030577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRGQASNNQGMDVLSGTNHDSAGVVPVGSFKREPEN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEccccccccHHHcHHHHccccccccEEEEccEEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccEEEcccccccccccHHccccEEEEEHHHHHHHHHHcccHEEccccccccEEEEccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MCNKLASRHVrvglanpsdvprcdicenapaffyceidgsslclqcdmtvhvggkrthgrYLLLRQRvefpgdkagrlEELALQSldqnkitrdqtqpfRITAREnqqnhrgspvpmldgnadgdgkvdnklidlnarpnrgqasnnqgmdvlsgtnhdsagvvpvgsfkrepen
Flexible Loop (DISEMBL)
mcnklasrhvrvglanpsdvprcDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELalqsldqnkitrdqtqpfritarenqqnhrgspvpmldgnaDGDGKVDNKLIDLnarpnrgqasnNQGMDVLSGTnhdsagvvpvgsfkrepen
Low Complexity Region (SEG)
MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRGQASNNQGMDVLSGTNHDSAGVVPVGSFKREPEN
Disordered region (IsUnstruct)
**********RVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPG*******************************************************************************************************
Disordered Region (DISOPRED)
*CNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQ************************************************************KVDNKLIDLN***************************************
Disordered Region (DISEMBL)
MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRGQASNNQGMDVLSGTNHDSAGVVPVGSFKREPEN
Disordered Region (DISPRO)
MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFP**********************************************************NKLIDLN*RPNRGQ********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDGNADGDGKVDNKLIDLNARPNRGQASNNQGMDVLSGTNHDSAGVVPVGSFKREPEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q9SYM2	299	Probable salt tolerance-l	no	no	0.542	0.317	0.344	2e-09
Q9LQZ7	331	Probable salt tolerance-l	no	no	0.348	0.184	0.417	2e-08
Q96288	248	Salt tolerance protein OS	no	no	0.342	0.241	0.460	4e-08
Q0IGM7	242	B-box zinc finger protein	no	no	0.377	0.272	0.385	1e-07
O50055	355	Zinc finger protein CONST	no	no	0.308	0.152	0.421	3e-06
Q9SK53	294	Zinc finger protein CONST	no	no	0.285	0.170	0.433	3e-06
Q940T9	362	Zinc finger protein CONST	no	no	0.234	0.113	0.448	4e-06
Q39057	373	Zinc finger protein CONST	no	no	0.308	0.144	0.437	6e-06
Q96502	347	Zinc finger protein CONST	no	no	0.308	0.155	0.406	1e-05
Q9SID1	238	Salt tolerance-like prote	no	no	0.377	0.277	0.420	1e-05

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 21/116 (18%)

Query: 3   NKLASRHVRVGL-ANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRY 61
           NKLA +H RV L A+ S +P+CDIC+ A  FF+C  D + LC +CD+ +H     T   +
Sbjct: 36  NKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIH-----TVNPH 90

Query: 62  LLLRQRVEFPGDKAGRLEELALQSLDQNKITRD---------QTQPFRITARENQQ 108
           +   QR    G K G      L+S+D    T+          +T+PF  +  E Q+
Sbjct: 91  VSAHQRFLLTGIKVG------LESIDTGPSTKSSPTNDDKTMETKPFVQSIPEPQK 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 3   NKLASRHVRVGLANPSDV----PRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT- 57
           NKLAS+H+R  L  PS      P CDIC++  A  +C+ D + LC  CD ++H   + T 
Sbjct: 36  NKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTK 95

Query: 58  -HGRYLL 63
            H R+LL
Sbjct: 96  KHDRFLL 102

Arabidopsis thaliana (taxid: 3702)

>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 3/63 (4%)

Query: 3  NKLASRHVRVGLANPS-DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HG 59
          NKLAS+H R+ L + S   PRCDIC+   AF +C  D + LC  CD ++HV   R+  H 
Sbjct: 36 NKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQ 95

Query: 60 RYL 62
          R+L
Sbjct: 96 RFL 98

May act as a transcription factor in the salt-stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 3   NKLASRHVRVGLANPS--DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--H 58
           NKLA +H+R  L +P+  D P CDIC    A  +C+ D + LC +CD+ +H   + T  H
Sbjct: 36  NKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKH 95

Query: 59  GRYLLLRQRV 68
            R+LL   ++
Sbjct: 96  NRFLLTGVKI 105

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 10/64 (15%)

Query: 3  NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
          N+LASRH RV +        C  CE APA F+C+ D +SLC  CD  +H      R H R
Sbjct: 43 NRLASRHERVRV--------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94

Query: 61 YLLL 64
            +L
Sbjct: 95 VPIL 98

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 10/60 (16%)

Query: 3  NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
          NKLASRH RV L        C++CE APA   C+ D ++LC+ CD  +H      R H R
Sbjct: 39 NKLASRHERVWL--------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHER 90

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 8/49 (16%)

Query: 3  NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH 51
          NKLASRH RV +        C++CE APA   C+ D ++LC+ CD  +H
Sbjct: 37 NKLASRHARVWM--------CEVCEQAPAHVTCKADAAALCVTCDRDIH 77

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 10/64 (15%)

Query: 3   NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
           N++ASRH RV +        C+ CE APA F CE D +SLC  CD  VH      R H R
Sbjct: 51  NRVASRHKRVRV--------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102

Query: 61  YLLL 64
             +L
Sbjct: 103 VPIL 106

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 10/64 (15%)

Query: 3   NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
           N++ASRH RV +        C  CE+APA F C+ D +SLC  CD  +H      R H R
Sbjct: 47  NRVASRHERVRV--------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR 98

Query: 61  YLLL 64
             +L
Sbjct: 99  VPIL 102

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 3   NKLASRHVRVGLANPS-DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HG 59
           NKLAS+H R+ L + S   P CDIC    AF +C  D + LC  CD   H    R+  H 
Sbjct: 36  NKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQ 95

Query: 60  RYLLLRQRV 68
           R+L    RV
Sbjct: 96  RFLATGIRV 104

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
255543867	212	Salt-tolerance protein, putative [Ricinu	0.994	0.820	0.764	4e-75
225427770	210	PREDICTED: salt tolerance protein [Vitis	0.994	0.828	0.778	1e-73
224103321	203	predicted protein [Populus trichocarpa]	0.954	0.822	0.738	3e-70
356545059	212	PREDICTED: uncharacterized protein LOC10	0.994	0.820	0.707	1e-66
224080459	203	predicted protein [Populus trichocarpa]	0.965	0.832	0.712	3e-66
351726912	212	uncharacterized protein LOC100527369 [Gl	0.994	0.820	0.696	3e-66
359476640	184	PREDICTED: probable salt tolerance-like	0.845	0.804	0.746	8e-58
115480279	211	Os09g0527900 [Oryza sativa Japonica Grou	0.977	0.810	0.630	9e-55
224097130	185	predicted protein [Populus trichocarpa]	0.851	0.805	0.692	9e-53
357483683	185	Zinc finger protein CONSTANS-like protei	0.845	0.8	0.695	3e-52

>gi|255543867|ref|XP_002512996.1| Salt-tolerance protein, putative [Ricinus communis] gi|223548007|gb|EEF49499.1| Salt-tolerance protein, putative [Ricinus communis]

 Score =  285 bits (730), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 136/178 (76%), Positives = 155/178 (87%), Gaps = 4/178 (2%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           +CNKLASRHVRVGLA+PS+VPRCDICEN PAFFYCEIDGSSLCLQCDM VHVGGKRTHGR
Sbjct: 34  LCNKLASRHVRVGLADPSEVPRCDICENEPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLLLRQRVEFPGDK GRL+EL  Q+LDQN++ RDQ QP ++T  EN+QNHR SPVPM++ 
Sbjct: 94  YLLLRQRVEFPGDKPGRLDELGQQALDQNEVRRDQIQPHKLTMGENKQNHRTSPVPMMEN 153

Query: 121 NADGDGKVDNKLIDLNARPNR--GQASNN--QGMDVLSGTNHDSAGVVPVGSFKREPE 174
           N++ DGK+DNKLIDLNARP R  GQ S N  QGMDV+SG+NH+ A +VPVGSF REPE
Sbjct: 154 NSNIDGKIDNKLIDLNARPQRIHGQNSTNQEQGMDVMSGSNHECASIVPVGSFNREPE 211

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427770|ref|XP_002267957.1| PREDICTED: salt tolerance protein [Vitis vinifera] gi|297744726|emb|CBI37988.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (717), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 137/176 (77%), Positives = 147/176 (83%), Gaps = 2/176 (1%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           MCNKLASRHVRVGLA+PSDVPRCDICENAPAFFYCE+DG+SLCLQCDM VHVGGKRTHGR
Sbjct: 34  MCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEVDGTSLCLQCDMIVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLLLRQRVEFPGDK GRLEEL LQS +  +  R+Q  P  +T RE Q NH  S VPML+ 
Sbjct: 94  YLLLRQRVEFPGDKPGRLEELRLQSGEPGEARREQNWPPMMTLRETQPNHMASSVPMLEN 153

Query: 121 NADGDGKVDNKLIDLNARPNR--GQASNNQGMDVLSGTNHDSAGVVPVGSFKREPE 174
           N  GDGK+DNKLIDLNARP R  GQ SNNQ MDV SGTNH+S  VVPVGSFKREPE
Sbjct: 154 NTHGDGKMDNKLIDLNARPQRVHGQTSNNQSMDVHSGTNHESESVVPVGSFKREPE 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103321|ref|XP_002313009.1| predicted protein [Populus trichocarpa] gi|222849417|gb|EEE86964.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 130/176 (73%), Positives = 144/176 (81%), Gaps = 9/176 (5%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           +CNKLASRHVRVGLA+PS VP+CDICENAPAFFYCEIDGSSLCLQCDM VHVGGKRTHGR
Sbjct: 34  LCNKLASRHVRVGLADPSAVPQCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLLLRQRVEFPGDK GR+EE   Q LD N+  RDQ QP ++TAREN+QNHR SPVPM++ 
Sbjct: 94  YLLLRQRVEFPGDKPGRMEEQGQQPLDHNETRRDQNQPLKLTARENKQNHRASPVPMVEN 153

Query: 121 NADGDGKVDNKLIDLNARPNR--GQASNNQGMDVLSGTNHDSAGVVPVGSFKREPE 174
           N D DGK+DN LIDLNARP R  GQ S NQ        NH+S+  VPVGSFKREP+
Sbjct: 154 NTDSDGKMDNNLIDLNARPQRIHGQNSTNQ-------ENHESSSAVPVGSFKREPQ 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545059|ref|XP_003540963.1| PREDICTED: uncharacterized protein LOC100818604 [Glycine max]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/178 (70%), Positives = 143/178 (80%), Gaps = 4/178 (2%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           MCNKLASRHVRVGLA+P+DVPRCDICENAPAFFYCEIDGSSLCLQCDM VHVGGKRTHGR
Sbjct: 34  MCNKLASRHVRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLLLRQRV+FP DK  ++EEL LQ +DQN+  RD++Q  ++  R++QQNH  SPVP  + 
Sbjct: 94  YLLLRQRVQFPCDKPAQMEELGLQPMDQNESRRDESQSLKLKIRDSQQNHSVSPVPRQEN 153

Query: 121 NADGDGKVDNKLIDLNARPNR--GQASNNQ--GMDVLSGTNHDSAGVVPVGSFKREPE 174
           N DG GK+D KLIDLN RP R  G A NNQ  GMD+L G NH SA V PV SFK+E E
Sbjct: 154 NIDGHGKMDKKLIDLNTRPLRLNGAAPNNQERGMDILRGNNHKSASVPPVESFKQESE 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080459|ref|XP_002306138.1| predicted protein [Populus trichocarpa] gi|222849102|gb|EEE86649.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 137/174 (78%), Gaps = 5/174 (2%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           MCNKLASRHVRVGLA+PSDVP+CDICE APAFFYCEIDGSSLCLQCDM VHVGGKRTHGR
Sbjct: 34  MCNKLASRHVRVGLADPSDVPQCDICEKAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLLLRQRVEFPGDK G  EE   Q LD N+  RDQ QP ++TARENQQNHR SPVPM++ 
Sbjct: 94  YLLLRQRVEFPGDKPGCTEEQGQQPLDDNETRRDQNQPPKLTARENQQNHRASPVPMVEN 153

Query: 121 NADGDGKVDNKLIDLNARPNRGQASNNQGMDVLSGTNHDSAGVVPVGSFKREPE 174
           N D DGK+DNKLIDLNARP R    N    +     NH+S+ + P G FK EP+
Sbjct: 154 NTDSDGKMDNKLIDLNARPQRVHGKNPTNQE-----NHESSSLAPFGFFKGEPQ 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726912|ref|NP_001235095.1| uncharacterized protein LOC100527369 [Glycine max] gi|255632193|gb|ACU16455.1| unknown [Glycine max]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/178 (69%), Positives = 142/178 (79%), Gaps = 4/178 (2%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           MCNKLASRHVRVGLA+P+DVPRCDICENAPAFFYCEIDGSSLCLQCDM VHVGGKRTHGR
Sbjct: 34  MCNKLASRHVRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLLLRQR +FPGDK  ++EEL LQ +DQN+  RD++Q  ++  R++QQNH  SP P  + 
Sbjct: 94  YLLLRQRAQFPGDKPAQMEELELQPMDQNESRRDESQSLKLKTRDSQQNHSVSPFPRQEN 153

Query: 121 NADGDGKVDNKLIDLNARPNR--GQASNNQG--MDVLSGTNHDSAGVVPVGSFKREPE 174
           N DG GK+D KLIDLN RP R  G A NNQ   MD+L G NH+SA V PV SFK+E E
Sbjct: 154 NIDGHGKMDKKLIDLNTRPLRLNGSAPNNQEQCMDILRGNNHESASVPPVESFKQESE 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476640|ref|XP_003631872.1| PREDICTED: probable salt tolerance-like protein At1g78600-like [Vitis vinifera] gi|297735043|emb|CBI17405.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (580), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 112/150 (74%), Positives = 124/150 (82%), Gaps = 2/150 (1%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           MCNKLASRHVRVGLA+PSDVPRCDICENAPAFFYCEIDG+SLCLQCDM VHVGGKRTHGR
Sbjct: 34  MCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEIDGTSLCLQCDMIVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLLLRQRVEFPGDK+G LE+ AL  ++  +  R Q Q  + T  ENQQN R SPVP +D 
Sbjct: 94  YLLLRQRVEFPGDKSGNLEDPALLPMEPGENRRGQNQSSKPTVVENQQNRRVSPVPTMDA 153

Query: 121 NADGDGKVDNKLIDLNARPNR--GQASNNQ 148
           NADG  K+D KLIDLN +P+R  GQASNNQ
Sbjct: 154 NADGHAKMDTKLIDLNMKPHRIHGQASNNQ 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115480279|ref|NP_001063733.1| Os09g0527900 [Oryza sativa Japonica Group] gi|52077327|dbj|BAD46368.1| unknown protein [Oryza sativa Japonica Group] gi|113631966|dbj|BAF25647.1| Os09g0527900 [Oryza sativa Japonica Group] gi|215768601|dbj|BAH00830.1| unnamed protein product [Oryza sativa Japonica Group] gi|218202491|gb|EEC84918.1| hypothetical protein OsI_32118 [Oryza sativa Indica Group] gi|222641956|gb|EEE70088.1| hypothetical protein OsJ_30084 [Oryza sativa Japonica Group]

 Score =  218 bits (554), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 111/176 (63%), Positives = 130/176 (73%), Gaps = 5/176 (2%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           MCNKLA RHVRVGLA+P+ V RCDICENAPAFFYCEIDG+SLCL CDMTVHVGGKRTHGR
Sbjct: 34  MCNKLARRHVRVGLADPNKVQRCDICENAPAFFYCEIDGTSLCLSCDMTVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLLLRQRVEFPGDK G ++++A+Q  D    T  +  P  +T  +   +H  S  P  DG
Sbjct: 94  YLLLRQRVEFPGDKPGHMDDVAMQQKDPENRTDQKKAPHSVTKEQMANHHNVSDDPASDG 153

Query: 121 NADGDGKVDNKLIDLNARPNR--GQASNN--QGMDVLSGTNHDSAGVVPVGSFKRE 172
           N D  G +D+K+IDLN RP R  GQ SN+  QG+DV S  NHDS GVVP  +F+RE
Sbjct: 154 NCDDQGNIDSKMIDLNMRPVRTHGQGSNSQTQGVDV-SVNNHDSPGVVPTCNFERE 208

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097130|ref|XP_002310844.1| predicted protein [Populus trichocarpa] gi|222853747|gb|EEE91294.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 119/153 (77%), Gaps = 4/153 (2%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCE DGSSLCLQCDMTVHVGGKRTHGR
Sbjct: 34  MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCETDGSSLCLQCDMTVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLLLRQRVEFPGDK  + ++L  Q +   +  + Q QP + TA E +QN + SP PM   
Sbjct: 94  YLLLRQRVEFPGDKP-QPDDLHSQPMHPGETRKGQNQPPKATAEEKRQNRQVSPAPMSLS 152

Query: 121 NADGDGKVDNKLIDLNARPNRG---QASNNQGM 150
           N+DG  KVD K+IDLN +P R    QASNNQ +
Sbjct: 153 NSDGHDKVDKKMIDLNMKPQRTDHEQASNNQEL 185

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483683|ref|XP_003612128.1| Zinc finger protein CONSTANS-like protein [Medicago truncatula] gi|355513463|gb|AES95086.1| Zinc finger protein CONSTANS-like protein [Medicago truncatula]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 114/151 (75%), Gaps = 3/151 (1%)

Query: 1   MCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 60
           MCNKLASRHVRVGLA+PSDVPRCDICENAPAFFYCE DGSSLCLQCDM VHVGGKRTHGR
Sbjct: 34  MCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGR 93

Query: 61  YLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVPMLDG 120
           YLL RQRVEFPGDK    +  A Q LD   I R Q+   +    E QQNHR  PVP  + 
Sbjct: 94  YLLFRQRVEFPGDKPSNADNPASQPLDPGDIKRGQSPLPKQKMGEKQQNHRMPPVPTSEP 153

Query: 121 NADGDGKVDNKLIDLNARPN---RGQASNNQ 148
           NADG+ K++NKLIDLN +PN      ASNNQ
Sbjct: 154 NADGNSKMENKLIDLNMKPNNRIHEHASNNQ 184

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.474	0.482	0.795	8.4e-41
TAIR|locus:2198841	248	STO "SALT TOLERANCE" [Arabidop	0.645	0.455	0.333	1e-11
TAIR|locus:2120207	242	BZS1 "BZS1" [Arabidopsis thali	0.348	0.252	0.415	5.6e-10
TAIR|locus:2005624	331	BBX21 "B-box domain protein 21	0.348	0.184	0.417	4.6e-09
TAIR|locus:2061330	238	STH "salt tolerance homologue"	0.542	0.399	0.333	2.6e-07
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.337	0.364	0.382	6.9e-06
TAIR|locus:2143206	373	CO "CONSTANS" [Arabidopsis tha	0.308	0.144	0.437	1.6e-05
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.285	0.170	0.433	1.9e-05
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.308	0.152	0.421	2.8e-05
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.308	0.155	0.406	0.00018

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
 Identities = 66/83 (79%), Positives = 74/83 (89%)

Query:     2 CNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRY 61
             CNKLASRH+RVGLA+PS+ P CDICENAPAFFYCEIDGSSLCLQCDM VHVGGKRTH R+
Sbjct:    35 CNKLASRHLRVGLADPSNAPSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRF 94

Query:    62 LLLRQRVEFPGDKAGRLEELALQ 84
             LLLRQR+EFPGDK    ++L L+
Sbjct:    95 LLLRQRIEFPGDKPNHADQLGLR 117

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2198841 STO "SALT TOLERANCE" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 39/117 (33%), Positives = 59/117 (50%)

Query:     3 NKLASRHVRVGLANPSD-VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HG 59
             NKLAS+H R+ L + S   PRCDIC+   AF +C  D + LC  CD ++HV   R+  H 
Sbjct:    36 NKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQ 95

Query:    60 RYLLLRQRVEFPGDKAGRLEELALQSLDQNKITRDQTQPFRITARENQQNHRGSPVP 116
             R+L    +V        +  E        N+   +Q  P + T+++ QQ    +P+P
Sbjct:    96 RFLATGIKVALTSTICSKEIEKNQPEPSNNQQKANQI-PAKSTSQQQQQPSSATPLP 151

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009640 "photomorphogenesis" evidence=IGI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2120207 BZS1 "BZS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 5.6e-10, P = 5.6e-10
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query:     3 NKLASRHVRVGLANPS--DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--H 58
             NKLA +H+R  L +P+  D P CDIC    A  +C+ D + LC +CD+ +H   + T  H
Sbjct:    36 NKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKH 95

Query:    59 GRYLL 63
              R+LL
Sbjct:    96 NRFLL 100

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

TAIR|locus:2005624 BBX21 "B-box domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 4.6e-09, P = 4.6e-09
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query:     3 NKLASRHVRVGLANPSDV----PRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT- 57
             NKLAS+H+R  L  PS      P CDIC++  A  +C+ D + LC  CD ++H   + T 
Sbjct:    36 NKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTK 95

Query:    58 -HGRYLL 63
              H R+LL
Sbjct:    96 KHDRFLL 102

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009641 "shade avoidance" evidence=IGI;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2061330 STH "salt tolerance homologue" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 33/99 (33%), Positives = 47/99 (47%)

Query:     3 NKLASRHVRVGLANPSD-VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HG 59
             NKLAS+H R+ L + S   P CDIC    AF +C  D + LC  CD   H    R+  H 
Sbjct:    36 NKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQ 95

Query:    60 RYLLLRQRVEFPGDKAGR-LEELALQSLDQNKITRDQTQ 97
             R+L    RV        + +E+      +Q  +++  TQ
Sbjct:    96 RFLATGIRVALSSTSCNQEVEKNHFDPSNQQSLSKPPTQ 134

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0019904 "protein domain specific binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 6.9e-06, P = 6.9e-06
 Identities = 26/68 (38%), Positives = 33/68 (48%)

Query:     3 NKLASRHVRVGL-------ANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK 55
             NKL  RH RV L          S  P CDIC+    +F+C  D + LC  CD  +H    
Sbjct:    36 NKLFQRHHRVALQKDAASATTASGAPLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN- 94

Query:    56 RTHGRYLL 63
              +H R+LL
Sbjct:    95 -SHQRFLL 101

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2143206 CO "CONSTANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
 Identities = 28/64 (43%), Positives = 34/64 (53%)

Query:     3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGR 60
             N++ASRH RV +        C+ CE APA F CE D +SLC  CD  VH      R H R
Sbjct:    51 NRVASRHKRVRV--------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102

Query:    61 YLLL 64
               +L
Sbjct:   103 VPIL 106

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IGI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010018 "far-red light signaling pathway" evidence=IMP

GO:0010218 "response to far red light" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 26/60 (43%), Positives = 33/60 (55%)

Query:     3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGR 60
             NKLASRH RV L        C++CE APA   C+ D ++LC+ CD  +H      R H R
Sbjct:    39 NKLASRHERVWL--------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHER 90

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 27/64 (42%), Positives = 34/64 (53%)

Query:     3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGR 60
             N+LASRH RV +        C  CE APA F+C+ D +SLC  CD  +H      R H R
Sbjct:    43 NRLASRHERVRV--------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94

Query:    61 YLLL 64
               +L
Sbjct:    95 VPIL 98

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 0.00018, P = 0.00018
 Identities = 26/64 (40%), Positives = 34/64 (53%)

Query:     3 NKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGR 60
             N++ASRH RV +        C  CE+APA F C+ D +SLC  CD  +H      R H R
Sbjct:    47 NRVASRHERVRV--------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR 98

Query:    61 YLLL 64
               +L
Sbjct:    99 VPIL 102

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	2e-09
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	4e-08
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	9e-05

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 20 VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLL 63
           P+CD   + PA F+CE  G+ LC  CD   H    R H   LL
Sbjct: 3  APKCDSHGDEPAEFFCEECGALLCRTCDEAEH----RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 46.9 bits (112), Expect = 4e-08
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 21 PRCDICENAPAFFYCEIDGSSLCLQCDMTVH 51
            CD     P   +CE D + LC+ CD++VH
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH 31

Length = 39

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 18 SDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVG 53
          S    C   E  P   YCE     LC +C ++ H G
Sbjct: 1  SKERLCPEHEEKPLELYCEDCQQLLCEECALSGHKG 36

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.93
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.59
smart00336	42	BBOX B-Box-type zinc finger.	97.3

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.93  E-value=9.6e-06  Score=49.62  Aligned_cols=38  Identities=39%  Similarity=0.834  Sum_probs=34.1

Q ss_pred             CcccccCCCceEEecCCCcccccccccCCcCCCCCCCceEec
Q 030577           22 RCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLL   63 (175)
Q Consensus        22 lCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsaN~~rH~RvpL   63 (175)
                      +|+.+...++.+||.+|.+.+|..|+...|    +.|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H----~~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVH----SGHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhc----CCCCEeeC
Confidence            599999889999999999999999998877    37888875

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.59  E-value=5.7e-05  Score=47.52  Aligned_cols=41  Identities=27%  Similarity=0.614  Sum_probs=35.4

Q ss_pred             CCCCcccccCCCceEEecCCCcccccccccCCcCCCCCCCceEec
Q 030577           19 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLL   63 (175)
Q Consensus        19 ~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsaN~~rH~RvpL   63 (175)
                      ....|+.|...++.+||..+...+|..|....|..    |..++|
T Consensus         2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~----H~~~~i   42 (42)
T PF00643_consen    2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG----HKIVPI   42 (42)
T ss_dssp             SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT----SEEEEC
T ss_pred             cCccCccCCccceEEEecCCCCccCccCCCCCCCC----CEEeEC
Confidence            45789999998899999999999999999999854    888775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=97.30  E-value=0.00025  Score=43.82  Aligned_cols=39  Identities=46%  Similarity=0.883  Sum_probs=33.9

Q ss_pred             CCcccccCCCceEEecCCCcccccccccCCcCCCCCCCceEec
Q 030577           21 PRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLL   63 (175)
Q Consensus        21 plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsaN~~rH~RvpL   63 (175)
                      ..|..|...++.+||..|.+.+|..|....|    +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H----~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH----RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc----CCCceecC
Confidence            4799999889999999999999999998766    47877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.13
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	94.17
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.82
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	92.56
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	91.62
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	90.97
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	90.88
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	90.76
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	89.88
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	89.44
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	88.26
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	84.42

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.13  E-value=0.0016  Score=46.12  Aligned_cols=42  Identities=24%  Similarity=0.387  Sum_probs=35.6

Q ss_pred             CCCcccccC---CCceEEecCCCcccccccccCCcCCCC--CCCceE
Q 030577           20 VPRCDICEN---APAFFYCEIDGSSLCLQCDMTVHVGGK--RTHGRY   61 (175)
Q Consensus        20 ~plCD~C~~---aPA~vyC~aD~A~LC~~CD~~vHsaN~--~rH~Rv   61 (175)
                      ...|++|..   .+|+.+|..+.++||..|...+|..++  .+|..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            347999984   689999999999999999999898665  578765

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=94.17  E-value=0.047  Score=37.53  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=43.7

Q ss_pred             cCceecccCC--CCCCCCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEecccccccC
Q 030577            7 SRHVRVGLAN--PSDVPRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLLRQRVEF   70 (175)
Q Consensus         7 sRH~Rv~L~~--~~~~plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~~~~~~~   70 (175)
                      .+|.-+....  ......|..-...+-.+||..|...+|..|-. .-|    +.|.-++|.++....
T Consensus         3 ~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~ea~~~~   65 (84)
T 2dja_A            3 SGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH----RDHQVASLNDRFEKL   65 (84)
T ss_dssp             CCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT----TTCCBCCCCSSCCCC
T ss_pred             CCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC----CCCCccCHHHHHHHH
Confidence            4566664322  23456788886677899999999999999976 555    468888888776543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.82  E-value=0.056  Score=37.97  Aligned_cols=58  Identities=21%  Similarity=0.261  Sum_probs=41.0

Q ss_pred             cccccCceecccCC--CCCCCCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEecc
Q 030577            3 NKLASRHVRVGLAN--PSDVPRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLL   64 (175)
Q Consensus         3 NkLasRH~Rv~L~~--~~~~plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~   64 (175)
                      ++...+|..+....  ......|+.....+-.+||..|...+|..|.. .-|.    .|.-++|.
T Consensus        40 ~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~----~H~~~~l~  100 (101)
T 2jun_A           40 KKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR----DHQVAALS  100 (101)
T ss_dssp             CSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHHTTTS----SSCBCCCC
T ss_pred             CCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccchhcCCCCCcC----CCCeecCC
Confidence            34456787763211  12456899997778999999999999999986 6673    46655554

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=92.56  E-value=0.12  Score=32.89  Aligned_cols=43  Identities=23%  Similarity=0.458  Sum_probs=35.3

Q ss_pred             CCCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEeccccc
Q 030577           20 VPRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLLRQR   67 (175)
Q Consensus        20 ~plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~~~~   67 (175)
                      ..+|..-. .+-.+||..|...+|..|-. .-|    +.|.-++|.++.
T Consensus         8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~ea~   51 (53)
T 2did_A            8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH----RAHTVVPLSGPS   51 (53)
T ss_dssp             CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT----TTSCEEECCCTT
T ss_pred             CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC----CCCcEeeHHHHh
Confidence            34688887 67899999999999999976 555    578899988764

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=91.62  E-value=0.17  Score=35.76  Aligned_cols=57  Identities=23%  Similarity=0.318  Sum_probs=45.7

Q ss_pred             CCCCCcccccCCCceEEecCC-CcccccccccCCcCCCC-CCCceEecccccccCCCCcc
Q 030577           18 SDVPRCDICENAPAFFYCEID-GSSLCLQCDMTVHVGGK-RTHGRYLLLRQRVEFPGDKA   75 (175)
Q Consensus        18 ~~~plCD~C~~aPA~vyC~aD-~A~LC~~CD~~vHsaN~-~rH~RvpL~~~~~~~p~~~p   75 (175)
                      .+.+.|-+|... |++.|... .-..|..|=+..|..-. +.|+-+++......-..+.|
T Consensus         6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~~~k~~~~~~~   64 (67)
T 2d8v_A            6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRRPCQEHSGP   64 (67)
T ss_dssp             CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCCSSSSCCCCCC
T ss_pred             cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccchhhhccceeeccCCCCCcccCCC
Confidence            567899999987 99999877 66999999999997544 89999998766555554544

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=90.97  E-value=0.15  Score=33.16  Aligned_cols=47  Identities=19%  Similarity=0.296  Sum_probs=37.7

Q ss_pred             CCCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEecccccccC
Q 030577           20 VPRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLLRQRVEF   70 (175)
Q Consensus        20 ~plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~~~~~~~   70 (175)
                      ...|..-...+-.+||..|...+|..|-. .-|    +.|.-+||.++....
T Consensus         8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~~a~~~~   55 (64)
T 2d8u_A            8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPLQSVFQGQ   55 (64)
T ss_dssp             CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST----TSSCEECTTTCCSSC
T ss_pred             CCcCcCcCCCccceEcCcCCceeCccccCCCcC----CCCCeeCHHHHHHHH
Confidence            34788886677899999999999999964 466    468999998876653

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=90.88  E-value=0.21  Score=31.18  Aligned_cols=44  Identities=20%  Similarity=0.554  Sum_probs=34.4

Q ss_pred             CCCcccccCCCceEEecCCCcccccccccCCcCCCCCCCceEeccccc
Q 030577           20 VPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQR   67 (175)
Q Consensus        20 ~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsaN~~rH~RvpL~~~~   67 (175)
                      ...|..-...+-.+||..|...+|..|-..-|    +.|.-++|.++.
T Consensus         6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H----~~H~~~~l~ea~   49 (50)
T 2yvr_A            6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH----KDHQYQFLEDAV   49 (50)
T ss_dssp             SCBCSSSTTCBCCEEETTTTEEECHHHHHTTT----TTCCEEETTC--
T ss_pred             CCcCcCCCCCCEEEEeCCCCEEEecccCCCcC----CCCceecHHHHh
Confidence            34688886667899999999999999977555    478888887753

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.76  E-value=0.23  Score=32.61  Aligned_cols=42  Identities=21%  Similarity=0.551  Sum_probs=34.4

Q ss_pred             CCcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEeccccc
Q 030577           21 PRCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLLRQR   67 (175)
Q Consensus        21 plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~~~~   67 (175)
                      .+|.... .+-.+||..|...+|..|-. .-|    +.|.-++|.++.
T Consensus        15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH----~~H~~~~l~ea~   57 (59)
T 2yrg_A           15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH----RGHHTFPTSGPS   57 (59)
T ss_dssp             SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT----TTCCEEECCSSC
T ss_pred             ccChhhC-ceeeeecCCCCcEEecccCCCCcC----CCCcEeeHHHHh
Confidence            5788876 57889999999999999976 455    578889988765

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=89.88  E-value=0.23  Score=33.31  Aligned_cols=46  Identities=17%  Similarity=0.551  Sum_probs=37.0

Q ss_pred             CCCCcccccCCCceEEecCCCcccccccccCCcCCCCCCCceEeccccccc
Q 030577           19 DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGRYLLLRQRVE   69 (175)
Q Consensus        19 ~~plCD~C~~aPA~vyC~aD~A~LC~~CD~~vHsaN~~rH~RvpL~~~~~~   69 (175)
                      ....|..-. .+-.+||..|...+|..|-..-|    +.|.-++|.++...
T Consensus        17 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H----~~H~~~~l~ea~~~   62 (72)
T 2csv_A           17 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEH----KNHSTVTVEEAKAE   62 (72)
T ss_dssp             SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT----SSSCEEEHHHHHHH
T ss_pred             ccCcCcccC-CceEEEeCCCCeEEccccCCCCC----CCCCEecHHHHHHH
Confidence            456888885 78899999999999999976555    57889998876553

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=89.44  E-value=0.15  Score=35.48  Aligned_cols=41  Identities=24%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             CCCCcccccC---CCceEEecCCCcccccccccCCcCCCC--CCCc
Q 030577           19 DVPRCDICEN---APAFFYCEIDGSSLCLQCDMTVHVGGK--RTHG   59 (175)
Q Consensus        19 ~~plCD~C~~---aPA~vyC~aD~A~LC~~CD~~vHsaN~--~rH~   59 (175)
                      ....||+|..   .+|+-+|....++||..|=...|....  .+|.
T Consensus        29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~   74 (78)
T 2ffw_A           29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHR   74 (78)
T ss_dssp             CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCC
T ss_pred             CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCc
Confidence            3568999986   679999999999999999887676644  4664

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=88.26  E-value=0.42  Score=29.66  Aligned_cols=40  Identities=23%  Similarity=0.445  Sum_probs=30.5

Q ss_pred             CCcccccCCCceEEecCCCcccccccc-cCCcCCCCCCCceEecc
Q 030577           21 PRCDICENAPAFFYCEIDGSSLCLQCD-MTVHVGGKRTHGRYLLL   64 (175)
Q Consensus        21 plCD~C~~aPA~vyC~aD~A~LC~~CD-~~vHsaN~~rH~RvpL~   64 (175)
                      .+|..-...+-.+||..|...+|..|- ..-|    +.|.-+||.
T Consensus         7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H----~~H~~~~l~   47 (48)
T 3ddt_A            7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPLQ   47 (48)
T ss_dssp             CBCSSSTTSBCCEEETTTTEEECHHHHHHSTT----TTSCEEECC
T ss_pred             CcCCCCCCccccEEcCCCCeeEcccccCCCcC----CCCcEEeCC
Confidence            457766656688999999999999996 4456    457777764

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=84.42  E-value=0.41  Score=28.76  Aligned_cols=30  Identities=27%  Similarity=0.638  Sum_probs=24.4

Q ss_pred             CCcccccCCCceEEecCCCccccccccc-CCc
Q 030577           21 PRCDICENAPAFFYCEIDGSSLCLQCDM-TVH   51 (175)
Q Consensus        21 plCD~C~~aPA~vyC~aD~A~LC~~CD~-~vH   51 (175)
                      .+|..-. .+-.+||..|...+|..|-. .-|
T Consensus         4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H   34 (42)
T 1fre_A            4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKH   34 (42)
T ss_dssp             CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred             ccchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence            3577776 57889999999999999976 455

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	93.03
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	89.05
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	81.13

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.036  Score=35.81  Aligned_cols=45  Identities=27%  Similarity=0.438  Sum_probs=36.1

Q ss_pred             CcccccCCCceEEecCCCccccccccc-CCcCCCCCCCceEecccccccC
Q 030577           22 RCDICENAPAFFYCEIDGSSLCLQCDM-TVHVGGKRTHGRYLLLRQRVEF   70 (175)
Q Consensus        22 lCD~C~~aPA~vyC~aD~A~LC~~CD~-~vHsaN~~rH~RvpL~~~~~~~   70 (175)
                      .|......+..+||.+|...+|..|-. ..|    ..|.-.+|..+....
T Consensus        13 ~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H----k~H~~~~i~~a~~~~   58 (71)
T d2djaa1          13 TCLDHENEKVNMYCVSDDQLICALCKLVGRH----RDHQVASLNDRFEKL   58 (71)
T ss_dssp             CCSSCSSSCCCEEETTTTEEECHHHHHTSTT----TTCCBCCCCSSCCCC
T ss_pred             cCcccCCccceeEcCCCCceeccccccCCCC----CCCcCcCHHHHHHHH
Confidence            599988888999999999999999954 456    368888887765543

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.05  E-value=0.13  Score=31.71  Aligned_cols=45  Identities=20%  Similarity=0.343  Sum_probs=35.9

Q ss_pred             CCcccccCCCceEEecCCCcccccccc-cCCcCCCCCCCceEeccccccc
Q 030577           21 PRCDICENAPAFFYCEIDGSSLCLQCD-MTVHVGGKRTHGRYLLLRQRVE   69 (175)
Q Consensus        21 plCD~C~~aPA~vyC~aD~A~LC~~CD-~~vHsaN~~rH~RvpL~~~~~~   69 (175)
                      |+|..-...+-.+||..|...+|..|- ...|    +.|.=.+|..+...
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H----k~H~v~~l~~a~~~   47 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH----KACEVAPLQSVFQG   47 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST----TSSCEECTTTCCSS
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc----CcCcCcCHHHHHHH
Confidence            578888778899999999999999995 4466    45888888776543

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.13  E-value=0.47  Score=28.66  Aligned_cols=39  Identities=28%  Similarity=0.509  Sum_probs=30.1

Q ss_pred             CcccccCCCceEEecCCCcccccccc-cCCcCCCCCCCceEecc
Q 030577           22 RCDICENAPAFFYCEIDGSSLCLQCD-MTVHVGGKRTHGRYLLL   64 (175)
Q Consensus        22 lCD~C~~aPA~vyC~aD~A~LC~~CD-~~vHsaN~~rH~RvpL~   64 (175)
                      .|..-...+-.+||..+...+|..|= ...|    +.|.-.+|.
T Consensus         7 ~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H----~~H~~~~l~   46 (47)
T d2dq5a1           7 MCLEHEDEKVNMYCVTDDQLICALCKLVGRH----RDHQVAALS   46 (47)
T ss_dssp             BCSSCTTSBEEEEETTTTEEEEHHHHHTSST----TSSCCCCSC
T ss_pred             cchhhCCCcceEEcCCCCccCCccCcCcCCc----CCCeEeeCC
Confidence            68888778899999999999999994 3456    346555543