Citrus Sinensis ID: 030607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MASLGIHYGGGGGGGAGATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccEEEEEEccccccccHHHHHHccccccccccEEEEEEEEcccccccccccccccEEEEEEEEEccccccccEEEEEEEcccccccccccEEEEEEEEEEcccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccEccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEccccHcccHHHHHHccccccccccEEEEEEEcccHHHccccccccccEEEEEEEEEccccccccEEEEEEEEEccccccccEEEcHHEHHHHHHccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maslgihygggggggagatvSTENVIDKWMKDSVVEIVKNLRETPLLVHVysdsgsgdstrlktekavpddwplmkskwedgttplpegVIFVEQlkeedaaddsggeseITRAWGILVQakgegcgpacyllktsragagsglglcctHFCLVKVKSFRETAEAQFKNCWLLN
Flexible Loop (DISEMBL)
maslgihygggggggagATVSTENVIDKWMKDSVVEIVKNLRETPLLvhvysdsgsgdstrlktekavpddwplmkskwedgttplPEGVIFVEQLKEEdaaddsggesEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN
Low Complexity Region (SEG)
MASLGIHYgggggggagaTVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN
Disordered region (IsUnstruct)
***********************NVIDKWMKDSVVEIVKNLRETPLLVHVY**********************************LPEGVIFVE****************ITRAWGILVQAKGEGCGPACYLLKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLL*
Disordered Region (DISOPRED)
***LG******************NVIDKWMKDSVVEIVKNLRETPLLVHVYS*******************W*****************VIFVEQL***************TRAWGILVQAKGEGCGPACYLLKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN
Disordered Region (DISEMBL)
MASLGIHYGGGGGGGAGATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYS**************AVPDDWPLMKSKWEDGTTPLPEGVIFVEQLKE**********SEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN
Disordered Region (DISPRO)
**SLGI*YGGGGG**AGATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTTPLPEGVIFVEQLKEED********SEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLGIHYGGGGGGGAGATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
224146222	227	predicted protein [Populus trichocarpa]	0.816	0.625	0.628	1e-44
356516241	248	PREDICTED: uncharacterized protein LOC10	0.925	0.649	0.562	1e-40
225448663	222	PREDICTED: uncharacterized protein LOC10	0.890	0.698	0.543	4e-39
255559727	233	conserved hypothetical protein [Ricinus	0.856	0.639	0.559	3e-38
356509080	241	PREDICTED: uncharacterized protein LOC10	0.890	0.643	0.551	3e-37
297816960	233	hypothetical protein ARALYDRAFT_907078 [	0.885	0.660	0.518	2e-36
15228898	233	uncharacterized protein [Arabidopsis tha	0.913	0.682	0.508	9e-35
18414834	239	uncharacterized protein [Arabidopsis tha	0.821	0.598	0.512	3e-34
297810635	244	hypothetical protein ARALYDRAFT_908432 [	0.821	0.586	0.506	4e-34
225448695	226	PREDICTED: uncharacterized protein LOC10	0.821	0.632	0.436	5e-27

>gi|224146222|ref|XP_002325927.1| predicted protein [Populus trichocarpa] gi|222862802|gb|EEF00309.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/148 (62%), Positives = 115/148 (77%), Gaps = 6/148 (4%)

Query: 26  IDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDD-WPLMKSKWEDGTT 84
           +++WM+DSVVEIV NLRE PLLVHVY++  SG  T LKTEK V ++ WP +  +WE   T
Sbjct: 81  VEQWMRDSVVEIVNNLREAPLLVHVYAEE-SGGMTVLKTEKEVAEEKWPGLMERWEKRET 139

Query: 85  PLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSGL 144
            LP+GVIFVE+L++ +  ++      ITRAWGI+VQ +G  CGP CYLLKTSR GAG GL
Sbjct: 140 QLPDGVIFVEKLEDGEEEEEDA----ITRAWGIVVQGRGVDCGPVCYLLKTSRVGAGPGL 195

Query: 145 GLCCTHFCLVKVKSFRETAEAQFKNCWL 172
           GLCCTHFCL+KV+SFRETA +QFKNCWL
Sbjct: 196 GLCCTHFCLMKVQSFRETARSQFKNCWL 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516241|ref|XP_003526804.1| PREDICTED: uncharacterized protein LOC100780848 [Glycine max]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/169 (56%), Positives = 120/169 (71%), Gaps = 8/169 (4%)

Query: 8   YGGGGGGGAGATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKA 67
           +G   GG     V  +  +D+WM++SVVEIVKNL+E PLLV V+  S    +T    ++ 
Sbjct: 77  FGKRDGGAKNDAVEGQERLDRWMRESVVEIVKNLKEAPLLVQVFPKS----ATMTTEKRM 132

Query: 68  VPDDWPLMKSKWEDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCG 127
           V +DWP +K +WE G TP+PEGVIFVE+L + D A+D GGE   TRAWG++VQ KG GCG
Sbjct: 133 VVEDWPAVKERWESGETPVPEGVIFVEEL-DGDTAEDGGGE-RTTRAWGVVVQGKGVGCG 190

Query: 128 PACYLLKTSRAGAG--SGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN 174
           P CYLLKT R G+G  SG+G+C THFCLVKVK FRET ++Q KNCWLL 
Sbjct: 191 PVCYLLKTVRVGSGPGSGMGICSTHFCLVKVKDFRETVQSQLKNCWLLQ 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448663|ref|XP_002279904.1| PREDICTED: uncharacterized protein LOC100260289 [Vitis vinifera]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/162 (54%), Positives = 115/162 (70%), Gaps = 7/162 (4%)

Query: 13  GGGAGATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDDW 72
           GGG   +++ E  +D+WM++SV EIVKNLRE PLLV VYSD  +G  T+LKTEKAV +DW
Sbjct: 68  GGGKIESLTREK-MDEWMRESVSEIVKNLREAPLLVEVYSDR-NGGGTKLKTEKAVAEDW 125

Query: 73  PLMKSKWEDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYL 132
           P ++S W+ G    PEG++ VE+    +  D+   + E T+ WG+++Q K   CGP CYL
Sbjct: 126 PHIESNWKIGEAQSPEGIMLVEE---LNNEDEDDDDEENTKLWGVVIQGKEANCGPCCYL 182

Query: 133 LKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN 174
           LKTSR    S LG  CTHFCL+KVKSFRETAE+QFKN WL++
Sbjct: 183 LKTSRVS--SNLGFFCTHFCLIKVKSFRETAESQFKNSWLVH 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559727|ref|XP_002520883.1| conserved hypothetical protein [Ricinus communis] gi|223540014|gb|EEF41592.1| conserved hypothetical protein [Ricinus communis]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/159 (55%), Positives = 110/159 (69%), Gaps = 10/159 (6%)

Query: 18  ATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVP-DDWPLMK 76
           ATV  E  +DKWM  SV EIVKNL+E PLLVHVY    +  +T L TEK+V  ++W    
Sbjct: 81  ATVVYEK-LDKWMHSSVAEIVKNLKEAPLLVHVYDKDET--TTALTTEKSVQVENWGAAL 137

Query: 77  SKWEDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTS 136
            KW+    PLPEGVIFVE+L      +D   + +ITRAWG++VQ K   CGP CYLLKTS
Sbjct: 138 EKWKKKEIPLPEGVIFVERL----DEEDEEEKEQITRAWGVVVQGKEAECGPVCYLLKTS 193

Query: 137 RAGAGSGL-GLCCTHFCLVKVKSFRETAEAQFKNCWLLN 174
           R  AGSG  G+CCTH+CL++V+SFRETA +Q KNCWL+ 
Sbjct: 194 RV-AGSGFGGMCCTHYCLMRVQSFRETALSQLKNCWLIQ 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509080|ref|XP_003523280.1| PREDICTED: uncharacterized protein LOC100809314 [Glycine max]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/165 (55%), Positives = 117/165 (70%), Gaps = 10/165 (6%)

Query: 13  GGGAGATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEK-AVPDD 71
           GG     +  +  +D+WM++SVVEIVKNL+E PLLV V+  S +     + TEK  V +D
Sbjct: 76  GGAKNDALEGQERLDRWMRESVVEIVKNLKEAPLLVLVFPKSAT-----MATEKRVVVED 130

Query: 72  WPLMKSKWEDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACY 131
           WP +K +WE G TP+PEG+IFVE+L + D A+D GGE   TRAWG++VQ KG GCGP CY
Sbjct: 131 WPAVKERWESGETPVPEGLIFVEEL-DGDTAEDGGGE-RTTRAWGVVVQGKGVGCGPVCY 188

Query: 132 LLKTSRAGA--GSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN 174
           LLKT R G+  G+G+G+C THFCLVKV  FRET ++Q KN WLL 
Sbjct: 189 LLKTCRVGSGPGNGMGICSTHFCLVKVNDFRETVQSQLKNIWLLQ 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816960|ref|XP_002876363.1| hypothetical protein ARALYDRAFT_907078 [Arabidopsis lyrata subsp. lyrata] gi|297322201|gb|EFH52622.1| hypothetical protein ARALYDRAFT_907078 [Arabidopsis lyrata subsp. lyrata]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 109/162 (67%), Gaps = 8/162 (4%)

Query: 17  GATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDDWPLMK 76
           G +V +   +D W++DSVVEIVKNLRE+PLL+H+Y+++  G +T     +A  +DWP M+
Sbjct: 73  GGSVVSREKLDVWLRDSVVEIVKNLRESPLLMHLYAEANGGLTTTATNPEA--EDWPEME 130

Query: 77  SKWEDGTTPLPEGVIFVEQLKEEDAADDSGGES----EITRAWGILVQAKGEGCGPACYL 132
            KW+ G    PEGVIFVE+L + D  DD   +     E T AWGI+ Q +G   GP CYL
Sbjct: 131 GKWDRGEERTPEGVIFVEKLADGDVEDDDDHDGGACGEDTSAWGIVAQGRGTDSGPVCYL 190

Query: 133 LKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN 174
           LKT+R G  SG+G  CTHFCLVKVKSFRETA +Q  N WL+ 
Sbjct: 191 LKTTRVG--SGMGTVCTHFCLVKVKSFRETAMSQLNNSWLVQ 230

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228898|ref|NP_191195.1| uncharacterized protein [Arabidopsis thaliana] gi|7594514|emb|CAB88039.1| putative protein [Arabidopsis thaliana] gi|21539571|gb|AAM53338.1| putative protein [Arabidopsis thaliana] gi|21553412|gb|AAM62505.1| unknown [Arabidopsis thaliana] gi|30023704|gb|AAP13385.1| At3g56360 [Arabidopsis thaliana] gi|332645992|gb|AEE79513.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 108/167 (64%), Gaps = 8/167 (4%)

Query: 12  GGGGAGATVSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDD 71
           GG   G +V +   +D W++DSVVEIVKNLRE+PLL+H+Y+++  G +T     KA  +D
Sbjct: 68  GGRKRGGSVVSREKLDVWLRDSVVEIVKNLRESPLLMHLYAEANGGLTTTATNPKA--ED 125

Query: 72  WPLMKSKWEDGTTPLPEGVIFVEQLKEEDAADDSGGES----EITRAWGILVQAKGEGCG 127
           W  M+ KW  G    PEGVI VE+L + D ADD   +     E T AWGI+ Q +G   G
Sbjct: 126 WTEMEGKWGRGEERTPEGVILVEKLADGDIADDDDHDGGACGEDTSAWGIVAQGRGSDTG 185

Query: 128 PACYLLKTSRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLLN 174
           P CYLLKT+R    SG+G  CTHFCLVKVKSFRETA +Q  N WL+ 
Sbjct: 186 PVCYLLKTTR--VRSGMGTVCTHFCLVKVKSFRETAMSQLNNSWLVQ 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414834|ref|NP_568152.1| uncharacterized protein [Arabidopsis thaliana] gi|10176737|dbj|BAB09968.1| unnamed protein product [Arabidopsis thaliana] gi|15810045|gb|AAL06949.1| AT5g05250/K18I23_5 [Arabidopsis thaliana] gi|332003463|gb|AED90846.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 104/154 (67%), Gaps = 11/154 (7%)

Query: 26  IDKWMKDSVVEIVKNLRETPLLVHVYS-DSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTT 84
           +D+WMK+SV EIVKNL E PLLVH+Y+ D   G    +K E     +W  +K +WE G  
Sbjct: 89  LDRWMKESVTEIVKNLSEAPLLVHLYTGDKEEGTVVVMKAE-----EWAAVKGRWERGEA 143

Query: 85  PLPEGVIFVEQL-KEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSG 143
            +PEG++FVEQL   E++        + TRAWG++VQ +G  CGP CYLLKT+R G+GSG
Sbjct: 144 EMPEGIVFVEQLGAAEESCGCGFDGGDGTRAWGLVVQGRGVECGPVCYLLKTTRVGSGSG 203

Query: 144 LG----LCCTHFCLVKVKSFRETAEAQFKNCWLL 173
            G    + CTHFCL KV SFRET+E+Q +NCWL+
Sbjct: 204 SGSGLGMRCTHFCLAKVSSFRETSESQLRNCWLV 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810635|ref|XP_002873201.1| hypothetical protein ARALYDRAFT_908432 [Arabidopsis lyrata subsp. lyrata] gi|297319038|gb|EFH49460.1| hypothetical protein ARALYDRAFT_908432 [Arabidopsis lyrata subsp. lyrata]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 102/156 (65%), Gaps = 13/156 (8%)

Query: 26  IDKWMKDSVVEIVKNLRETPLLVHVYS-DSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTT 84
           +D+WMK+SV EIVKNL E PLLVH+Y+ D   G    +K E     +W  +K +WE G  
Sbjct: 92  LDRWMKESVTEIVKNLSEAPLLVHLYTGDKEEGTVVVMKAE-----EWAAVKGRWERGEA 146

Query: 85  PLPEGVIFVEQL-KEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSG 143
            +PEG++FVEQL   E++        + TRAWG++VQ KG  CGP CYLLKT+R G+ SG
Sbjct: 147 EMPEGIVFVEQLGAAEESCGCGFDGGDGTRAWGLVVQGKGVECGPVCYLLKTTRVGSMSG 206

Query: 144 LGLC------CTHFCLVKVKSFRETAEAQFKNCWLL 173
            G        CTHFCL KV SFRET+E+Q +NCWL+
Sbjct: 207 SGSGSGLGMRCTHFCLAKVSSFRETSESQLRNCWLV 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448695|ref|XP_002275208.1| PREDICTED: uncharacterized protein LOC100244995 [Vitis vinifera]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 98/149 (65%), Gaps = 6/149 (4%)

Query: 26  IDKWMKDSVVEIVKNLR-ETPLLVHVYSDSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTT 84
           ++ WM++SVVEIV+NLR  + LL  VY++   G+ T LK  KA  +DWP +K KW+ G T
Sbjct: 82  MEHWMRESVVEIVQNLRGSSSLLAEVYTEGRGGEFT-LKIGKAGAEDWPEIKEKWKKGET 140

Query: 85  PLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSRAGAGSGL 144
             P+G+I VE+LK+E   D    + E  R WG++VQ KG  C P CY+LKT+R    + L
Sbjct: 141 SSPDGIIVVEELKDEGEEDTKVKKEE--RFWGLMVQGKGFDCAPCCYVLKTNR--PNTNL 196

Query: 145 GLCCTHFCLVKVKSFRETAEAQFKNCWLL 173
            + CT+F L+KV++F ++A++Q    +L+
Sbjct: 197 HISCTYFVLIKVQNFNDSAKSQIDRSFLV 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2153509	239	AT5G05250 "AT5G05250" [Arabido	0.810	0.589	0.525	1.4e-39
TAIR|locus:2102489	233	AT3G56360 "AT3G56360" [Arabido	0.856	0.639	0.544	9.9e-39

TAIR|locus:2153509 AT5G05250 "AT5G05250" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 82/156 (52%), Positives = 107/156 (68%)

Query:    26 IDKWMKDSVVEIVKNLRETPLLVHVYS-DSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTT 84
             +D+WMK+SV EIVKNL E PLLVH+Y+ D   G    +K E     +W  +K +WE G  
Sbjct:    89 LDRWMKESVTEIVKNLSEAPLLVHLYTGDKEEGTVVVMKAE-----EWAAVKGRWERGEA 143

Query:    85 PLPEGVIFVEQL---KEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSR---- 137
              +PEG++FVEQL   +E       GG+   TRAWG++VQ +G  CGP CYLLKT+R    
Sbjct:   144 EMPEGIVFVEQLGAAEESCGCGFDGGDG--TRAWGLVVQGRGVECGPVCYLLKTTRVGSG 201

Query:   138 AGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLL 173
             +G+GSGLG+ CTHFCL KV SFRET+E+Q +NCWL+
Sbjct:   202 SGSGSGLGMRCTHFCLAKVSSFRETSESQLRNCWLV 237

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102489 AT3G56360 "AT3G56360" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 86/158 (54%), Positives = 106/158 (67%)

Query:    20 VSTENVIDKWMKDSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDDWPLMKSKW 79
             VS E  +D W++DSVVEIVKNLRE+PLL+H+Y+++  G +T     KA  +DW  M+ KW
Sbjct:    77 VSREK-LDVWLRDSVVEIVKNLRESPLLMHLYAEANGGLTTTATNPKA--EDWTEMEGKW 133

Query:    80 EDGTTPLPEGVIFVEQLKEEDAADDS---GGE-SEITRAWGILVQAKGEGCGPACYLLKT 135
               G    PEGVI VE+L + D ADD    GG   E T AWGI+ Q +G   GP CYLLKT
Sbjct:   134 GRGEERTPEGVILVEKLADGDIADDDDHDGGACGEDTSAWGIVAQGRGSDTGPVCYLLKT 193

Query:   136 SRAGAGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWLL 173
             +R    SG+G  CTHFCLVKVKSFRETA +Q  N WL+
Sbjct:   194 TRVR--SGMGTVCTHFCLVKVKSFRETAMSQLNNSWLV 229


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      174       164   0.00088  107 3  11 22  0.42    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  165 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.32u 0.09s 16.41t   Elapsed:  00:00:01
  Total cpu time:  16.32u 0.09s 16.41t   Elapsed:  00:00:01
  Start:  Sat May 11 07:22:57 2013   End:  Sat May 11 07:22:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 27/194 (13%), Positives = 61/194 (31%), Gaps = 60/194 (30%)

Query: 4   LGIHYGGGGGGGAGATV------STENVIDK------WMK-------DSVVEIVKNLRET 44
           + I     G  G+G T        +  V  K      W+        ++V+E+++ L   
Sbjct: 153 VLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 45  PLLVHVYSDSGSG-DSTRLKTEKAVPDDWPLMKSKWEDGTTPLPEGVIFVEQLKEEDAAD 103
             +   ++       + +L+      +   L+KSK      P    ++ +      +  +
Sbjct: 209 --IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK------PYENCLLVL-----LNVQN 255

Query: 104 DSGGESEITRAWGILVQAKGEGCGPACYLLKTSR--AGAGSGLGLCCTHFCLVKV-KSF- 159
                ++   A+ +           +C +L T+R             TH  L     +  
Sbjct: 256 -----AKAWNAFNL-----------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 160 -RETAE--AQFKNC 170
             E      ++ +C
Sbjct: 300 PDEVKSLLLKYLDC 313

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2i9o_A	37	MHB8A peptide; beta-hairpin, alpha-helix, de novo	88.86

>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}

Probab=88.86  E-value=0.12  Score=32.76  Aligned_cols=20  Identities=50%  Similarity=1.014  Sum_probs=15.2

Q ss_pred             cceeecCCCCCCCCcceeeh
Q 030607            4 LGIHYGGGGGGGAGATVSTE   23 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~v~~~   23 (174)
                      -||.|-||||||.|.+.+..
T Consensus         7 ngityeggggggggsaaeay   26 (37)
T 2i9o_A            7 NGITYEGGGGGGGGSAAEAY   26 (37)
T ss_dssp             SSCCCCCSCCCCSCSSHHHH
T ss_pred             CCEEeecCCCCCcchHHHHH
Confidence            48999888888877776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00