Citrus Sinensis ID: 030641

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDSSKLNHVTSVLRLITEYLWLFLD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccEEccccccccEEEEEccEEEEEEEccccccEEEEEEEEEEEEEcccccEEEEEEEcccEEEEEEEEEccccEEEEccccccEEEEEEEEccccccEEEEEEEEEccHHHHHHHHcHHHHHHccHHHHHHHHHHEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEcEEEccccEEEEcccccHHHHHHHcEEEEEEcccHHHHHHcccccEEEEEcccccEEEEEEEcccEEEEEEcEEEccccEEccccccccEEEEEEcccccccccHHEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masttegdhreeevphnededtgaqvapIVKLEEVavttgeedEDAILDLKAKLYRFdkdgnqwkergAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPmmsvqehagndkscvwhaadyadgelkdELFCIrfgsveseyFFSFidssklnhVTSVLRLITEYLWLFLD
Flexible Loop (DISEMBL)
masttegdhreeevphnededtgaqvapIVKLEEVavttgeedeDAILDLKAKLyrfdkdgnqwkergagtvkllkhkvtgkvrlvmrqskTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIdssklnhvtSVLRLITEYLWLFLD
Low Complexity Region (SEG)
MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDSSKLNHVTSVLRLITEYLWLFLD
Disordered region (IsUnstruct)
***************************PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDSSKLNHVTSVLRLITEYLWLFL*
Disordered Region (DISOPRED)
****************************************EEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDSS**********LITEYLWLFL*
Disordered Region (DISEMBL)
***********************AQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDSSKLNHVTSVLRLITEYLWLFLD
Disordered Region (DISPRO)
*********************TGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDSSKLNHVTSVLRLITEYLWLFLD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDSSKLNHVTSVLRLITEYLWLFLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
P92985	219	Ran-binding protein 1 hom	yes	no	0.844	0.671	0.790	6e-65
Q8RWG8	217	Ran-binding protein 1 hom	no	no	0.844	0.677	0.788	3e-64
Q9LMK7	228	Ran-binding protein 1 hom	no	no	0.793	0.605	0.827	5e-63
Q9ERU9	3053	E3 SUMO-protein ligase Ra	yes	no	0.758	0.043	0.488	7e-33
P49792	3224	E3 SUMO-protein ligase Ra	yes	no	0.758	0.040	0.467	3e-30
Q3T0M7	206	Ran-specific GTPase-activ	no	no	0.752	0.635	0.496	2e-29
P34022	203	Ran-specific GTPase-activ	no	no	0.752	0.645	0.496	3e-29
P43487	201	Ran-specific GTPase-activ	no	no	0.712	0.616	0.503	3e-29
P41920	201	Ran-specific GTPase-activ	yes	no	0.793	0.686	0.468	2e-28
Q09717	215	Ran-specific GTPase-activ	yes	no	0.689	0.558	0.528	3e-28

>sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1

 Score =  246 bits (628), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 117/148 (79%), Positives = 133/148 (89%), Gaps = 1/148 (0%)

Query: 1   MAST-TEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDK 59
           MAST  E ++RE+E   NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+K+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 60  DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
           +GNQWKERGAGTVKLLKHK TGKVRLVMRQSKTLKICANHL+   MSVQEH+GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 120 HAADYADGELKDELFCIRFGSVESEYFF 147
           HA D++DGELKDELFCIRF S+E+   F
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTF 148

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2

 Score =  243 bits (621), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/151 (78%), Positives = 129/151 (85%), Gaps = 4/151 (2%)

Query: 1   MASTTEGDHRE----EEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYR 56
           MAS +    RE    EE   NEDEDTGAQVAPIV+LEEVAVTTGEEDED ILDLK+KLYR
Sbjct: 1   MASISNEPERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYR 60

Query: 57  FDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKS 116
           FDKDG+QWKERGAGTVK LKH+V+GK+RLVMRQSKTLKICANHLV   MSVQEHAGNDKS
Sbjct: 61  FDKDGSQWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKS 120

Query: 117 CVWHAADYADGELKDELFCIRFGSVESEYFF 147
           CVWHA D++DGELKDELFCIRF SVE+   F
Sbjct: 121 CVWHARDFSDGELKDELFCIRFASVENCKAF 151

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMK7|RBP1A_ARATH Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1

 Score =  239 bits (611), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/139 (82%), Positives = 124/139 (89%), Gaps = 1/139 (0%)

Query: 6   EGDHR-EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQW 64
           E +HR EEE   NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+KLYRFDKD NQW
Sbjct: 7   EHEHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQW 66

Query: 65  KERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADY 124
           KERGAGTVK LKHK TGK+RLVMRQSKTLKICANH V   MSVQEH GN+KSCVWHA D+
Sbjct: 67  KERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDF 126

Query: 125 ADGELKDELFCIRFGSVES 143
           ADGELKDELFCIRF S+E+
Sbjct: 127 ADGELKDELFCIRFASIEN 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 1/133 (0%)

Query: 16   HNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 74
            H ++ED G    P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+
Sbjct: 1156 HGDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKI 1215

Query: 75   LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 134
            L+HK +GK+RL+MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E  
Sbjct: 1216 LRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQL 1275

Query: 135  CIRFGSVESEYFF 147
             IRF + E    F
Sbjct: 1276 AIRFKTPEEAALF 1288

E3 SUMO-protein ligase which facilitates SUMO1 and SUMO2 conjugation by UBE2I. Involved in transport factor (Ran-GTP, karyopherin)-mediated protein import via the F-G repeat-containing domain which acts as a docking site for substrates. Could also have isomerase or chaperone activity and may bind RNA or DNA. Component of the nuclear export pathway. Specific docking site for the nuclear export factor exportin-1.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2

 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 88/137 (64%), Gaps = 5/137 (3%)

Query: 28   PIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLV 86
            P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+L+HK +GK+RL+
Sbjct: 1174 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLL 1233

Query: 87   MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYF 146
            MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E   IRF + E    
Sbjct: 1234 MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAAL 1293

Query: 147  FSFIDSSKLNHVTSVLR 163
            F      K     S+L+
Sbjct: 1294 F----KCKFEEAQSILK 1306

E3 SUMO-protein ligase which facilitates SUMO1 and SUMO2 conjugation by UBE2I. Involved in transport factor (Ran-GTP, karyopherin)-mediated protein import via the F-G repeat-containing domain which acts as a docking site for substrates. Could also have isomerase or chaperone activity and may bind RNA or DNA. Component of the nuclear export pathway. Specific docking site for the nuclear export factor exportin-1.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3T0M7|RANG_BOVIN Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 89/135 (65%), Gaps = 4/135 (2%)

Query: 17  NEDEDT-GAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVK 73
           N DE     Q  PIV L E  + T EEDE+ +  ++AKL+RF  + D  +WKERG G VK
Sbjct: 17  NADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVK 76

Query: 74  LLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDE 132
           LLKHK  G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+  AD+AD   K E
Sbjct: 77  LLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKQE 136

Query: 133 LFCIRFGSVESEYFF 147
           L  IRF + E+   F
Sbjct: 137 LLAIRFLNAENAQKF 151

Inhibits GTP exchange on Ran. Forms a Ran-GTP-RANBP1 trimeric complex. Increase GTP hydrolysis induced by the Ran GTPase activating protein RANGAP1. May act in an intracellular signaling pathway which may control the progression through the cell cycle by regulating the transport of protein and nucleic acids across the nuclear membrane.

Bos taurus (taxid: 9913)

>sp|P34022|RANG_MOUSE Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1 PE=1 SV=2

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/135 (49%), Positives = 89/135 (65%), Gaps = 4/135 (2%)

Query: 17  NEDEDT-GAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVK 73
           N DE     Q  PIV L E  + T EEDE+ +  ++AKL+RF  + D  +WKERG G VK
Sbjct: 17  NADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVK 76

Query: 74  LLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDE 132
           LLKHK  G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+  AD+AD   K E
Sbjct: 77  LLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPE 136

Query: 133 LFCIRFGSVESEYFF 147
           L  IRF + E+   F
Sbjct: 137 LLAIRFLNAENAQKF 151

Inhibits GTP exchange on Ran. Forms a Ran-GTP-RANBP1 trimeric complex. Increase GTP hydrolysis induced by the Ran GTPase activating protein RANGAP1. May act in an intracellular signaling pathway which may control the progression through the cell cycle by regulating the transport of protein and nucleic acids across the nuclear membrane.

Mus musculus (taxid: 10090)

>sp|P43487|RANG_HUMAN Ran-specific GTPase-activating protein OS=Homo sapiens GN=RANBP1 PE=1 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 86/127 (67%), Gaps = 3/127 (2%)

Query: 24  AQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTG 81
            Q  PIV L E  + T EEDE+ +  ++AKL+RF  + D  +WKERG G VKLLKHK  G
Sbjct: 25  PQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKG 84

Query: 82  KVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGS 140
            +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+  AD+AD   K EL  IRF +
Sbjct: 85  AIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLN 144

Query: 141 VESEYFF 147
            E+   F
Sbjct: 145 AENAQKF 151

Inhibits GTP exchange on Ran. Forms a Ran-GTP-RANBP1 trimeric complex. Increase GTP hydrolysis induced by the Ran GTPase activating protein RANGAP1. May act in an intracellular signaling pathway which may control the progression through the cell cycle by regulating the transport of protein and nucleic acids across the nuclear membrane.

Homo sapiens (taxid: 9606)

>sp|P41920|YRB1_YEAST Ran-specific GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 92/141 (65%), Gaps = 3/141 (2%)

Query: 6   EGDHREEEVPHNED--EDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQ 63
           E D +EE     +D  E       P+V LE+V V T EEDE+ +  ++AKL+RFD D  +
Sbjct: 43  EEDTKEETKKEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKE 102

Query: 64  WKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AA 122
           WKERG G  K LK+K T KVR++MR+ KTLKICANH++ P  +++ + G+D+S V+   A
Sbjct: 103 WKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTA 162

Query: 123 DYADGELKDELFCIRFGSVES 143
           D A+GE +   F IRFGS E+
Sbjct: 163 DIAEGEAEAFTFAIRFGSKEN 183

Important for the export of protein containing nuclear export signal (NES) out of the nucleus. Stimulates the GTPase activity of GSP1 and GSP2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q09717|RANG_SCHPO Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)

Query: 28  PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
           PIVKL  V   T EE+E     ++AKL+RFDK  ++WKERG G  +LLKHK TGK RLVM
Sbjct: 77  PIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDARLLKHKETGKTRLVM 136

Query: 88  RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVESEYF 146
           R+ KTLK+CANHL++P M +  + G+D+S VW  AAD ++GE   E F IRF + E+   
Sbjct: 137 RRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANL 196

Query: 147 F 147
           F
Sbjct: 197 F 197

Stimulates the GTPase activity in the presence of RNA1. May potentiate the action of RanGAP1 (RNA1), thus playing the role of a negative regulator.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
224105935	218	predicted protein [Populus trichocarpa]	0.844	0.674	0.865	5e-68
224055337	218	predicted protein [Populus trichocarpa]	0.896	0.715	0.791	2e-66
449455021	216	PREDICTED: ran-binding protein 1 homolog	0.821	0.662	0.839	3e-65
449517628	216	PREDICTED: LOW QUALITY PROTEIN: ran-bind	0.844	0.680	0.823	4e-65
356576095	223	PREDICTED: ran-binding protein 1 homolog	0.810	0.632	0.832	3e-64
255551194	217	ran binding protein, putative [Ricinus c	0.873	0.700	0.756	5e-64
225439378	221	PREDICTED: ran-binding protein 1 homolog	0.844	0.665	0.809	7e-64
356535743	218	PREDICTED: ran-binding protein 1 homolog	0.810	0.646	0.825	8e-64
8843780	248	unnamed protein product [Arabidopsis tha	0.821	0.576	0.805	2e-63
30697102	219	Ran-binding protein 1-c [Arabidopsis tha	0.844	0.671	0.790	3e-63

>gi|224105935|ref|XP_002313984.1| predicted protein [Populus trichocarpa] gi|222850392|gb|EEE87939.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 129/149 (86%), Positives = 135/149 (90%), Gaps = 2/149 (1%)

Query: 1   MAST-TEGDHRE-EEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFD 58
           MAST  E +HRE EE P  EDEDTGAQVAPIVKLEEVAV+TGEEDEDAILDLK+KLYRFD
Sbjct: 1   MASTEPEHEHREDEEAPAGEDEDTGAQVAPIVKLEEVAVSTGEEDEDAILDLKSKLYRFD 60

Query: 59  KDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV 118
           KDGNQWKERGAGTVKLLKHK +GKVRLVMRQSKTLKICANHLVLP MSVQEHAGNDKSCV
Sbjct: 61  KDGNQWKERGAGTVKLLKHKESGKVRLVMRQSKTLKICANHLVLPTMSVQEHAGNDKSCV 120

Query: 119 WHAADYADGELKDELFCIRFGSVESEYFF 147
           WHA D+ADGELKDELFCIRF SVE+   F
Sbjct: 121 WHATDFADGELKDELFCIRFASVENCKTF 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055337|ref|XP_002298487.1| predicted protein [Populus trichocarpa] gi|118481604|gb|ABK92744.1| unknown [Populus trichocarpa] gi|222845745|gb|EEE83292.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/163 (79%), Positives = 137/163 (84%), Gaps = 7/163 (4%)

Query: 1   MAST-TEGDHRE-EEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFD 58
           MAST  E  HRE EE P  +DEDTGAQVAPIVKLEEVAV+TGEEDED ILDLK+KLYRFD
Sbjct: 1   MASTEPEHQHREDEEAPAGDDEDTGAQVAPIVKLEEVAVSTGEEDEDTILDLKSKLYRFD 60

Query: 59  KDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV 118
           KDGNQWKERGAGTVK LKHK +GKVRLVMRQSKTLKICANHLVLP MSVQEHAGN+KSCV
Sbjct: 61  KDGNQWKERGAGTVKFLKHKESGKVRLVMRQSKTLKICANHLVLPAMSVQEHAGNEKSCV 120

Query: 119 WHAADYADGELKDELFCIRFGSVES-----EYFFSFIDSSKLN 156
           WHA D+ADGELKDELFCIRF SVE+     E F    +S K N
Sbjct: 121 WHATDFADGELKDELFCIRFASVENCKTFMEMFQEVAESQKSN 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455021|ref|XP_004145252.1| PREDICTED: ran-binding protein 1 homolog b-like [Cucumis sativus] gi|449471757|ref|XP_004153400.1| PREDICTED: ran-binding protein 1 homolog b-like [Cucumis sativus]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/143 (83%), Positives = 126/143 (88%)

Query: 1   MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKD 60
           MAST      +EE P  EDEDTGAQVAPIVKLE V VTTGEEDED +LDLKAKLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVK LKHK TGKVRLVMRQSKTLKICANHLVLP M+VQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 AADYADGELKDELFCIRFGSVES 143
           A D+ADGELKDELFCIRF S+E+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517628|ref|XP_004165847.1| PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog b-like [Cucumis sativus]

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/147 (82%), Positives = 127/147 (86%)

Query: 1   MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKD 60
           MAST      +EE P  EDEDTGAQVAPIVKLE V VTTGEEDED +LDLKAKLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVK LKHK TGKVRLVMRQSKTLKICANHLVLP M+VQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 AADYADGELKDELFCIRFGSVESEYFF 147
           A D+ADGELKDELFCIRF S+E+   F
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSF 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576095|ref|XP_003556169.1| PREDICTED: ran-binding protein 1 homolog b-like [Glycine max]

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/143 (83%), Positives = 130/143 (90%), Gaps = 2/143 (1%)

Query: 3   STTEGDHREEE-VPH-NEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKD 60
           S+ + +HREEE  P   +DEDTGA VAPIVKLEEVAVTTGEEDEDAILDLK+KLYRFDKD
Sbjct: 2   SSADPEHREEEEAPAVGDDEDTGAHVAPIVKLEEVAVTTGEEDEDAILDLKSKLYRFDKD 61

Query: 61  GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVK LKHK TGKVRL+MRQSKTLKICANHL+LP MSVQEHAGN+KSCVWH
Sbjct: 62  GNQWKERGAGTVKFLKHKATGKVRLLMRQSKTLKICANHLILPTMSVQEHAGNEKSCVWH 121

Query: 121 AADYADGELKDELFCIRFGSVES 143
           A D+ADGELKDELFCIRF S+E+
Sbjct: 122 ARDFADGELKDELFCIRFPSIEN 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551194|ref|XP_002516644.1| ran binding protein, putative [Ricinus communis] gi|223544216|gb|EEF45739.1| ran binding protein, putative [Ricinus communis]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 121/160 (75%), Positives = 136/160 (85%), Gaps = 8/160 (5%)

Query: 3   STTEGDHR---EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDK 59
           ++TE DH    ++E PH +DEDTGAQVAPIVKLEEVAV+TGEEDED ILDLKAKLYRFDK
Sbjct: 2   ASTELDHERREDDEAPHADDEDTGAQVAPIVKLEEVAVSTGEEDEDPILDLKAKLYRFDK 61

Query: 60  DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
           +GNQWKERGAG+VKLL+HK TGKVRLVMRQSKTLKICANHLVL  M+VQEHAGN+KSCVW
Sbjct: 62  EGNQWKERGAGSVKLLRHKETGKVRLVMRQSKTLKICANHLVLASMTVQEHAGNEKSCVW 121

Query: 120 HAADYADGELKDELFCIRFGSVES-----EYFFSFIDSSK 154
           HA D+ADGELKDELFCIRF S+E+     E F    +S K
Sbjct: 122 HATDFADGELKDELFCIRFPSIENCKSFMEMFQEVAESQK 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439378|ref|XP_002262903.1| PREDICTED: ran-binding protein 1 homolog c [Vitis vinifera] gi|296081117|emb|CBI18249.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (633), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 119/147 (80%), Positives = 127/147 (86%)

Query: 1   MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKD 60
           MAST      EE+ P  EDEDTGAQVAPIVKLE VAVTTGEE+EDAILDLKAKLYRFDK+
Sbjct: 1   MASTGPERREEEDAPAGEDEDTGAQVAPIVKLEVVAVTTGEEEEDAILDLKAKLYRFDKE 60

Query: 61  GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
           G QWKERG GTVK LKHK +GKVRLVMRQSKTLKICANHLVLP M+VQEH+GNDKSCVWH
Sbjct: 61  GKQWKERGVGTVKFLKHKGSGKVRLVMRQSKTLKICANHLVLPTMTVQEHSGNDKSCVWH 120

Query: 121 AADYADGELKDELFCIRFGSVESEYFF 147
           A D+ADGELKDELFCIRF SVE+   F
Sbjct: 121 ATDFADGELKDELFCIRFASVENCKTF 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535743|ref|XP_003536403.1| PREDICTED: ran-binding protein 1 homolog c-like [Glycine max]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 118/143 (82%), Positives = 130/143 (90%), Gaps = 2/143 (1%)

Query: 3   STTEGDHREEE-VPH-NEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKD 60
           S+ + +HREEE  P   +DEDTGA VAPIVKLEEVAVTTGEEDEDAILDLK+KLYRFDKD
Sbjct: 2   SSADPEHREEEEAPAVGDDEDTGAHVAPIVKLEEVAVTTGEEDEDAILDLKSKLYRFDKD 61

Query: 61  GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVK LKHK +GKVRL+MRQSKTLKICANHL+LP MSVQEHAGN+KSCVWH
Sbjct: 62  GNQWKERGAGTVKFLKHKASGKVRLLMRQSKTLKICANHLILPTMSVQEHAGNEKSCVWH 121

Query: 121 AADYADGELKDELFCIRFGSVES 143
           A D+ADGELKDELFCIRF S+E+
Sbjct: 122 ARDFADGELKDELFCIRFPSIEN 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8843780|dbj|BAA97328.1| unnamed protein product [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/144 (80%), Positives = 132/144 (91%), Gaps = 1/144 (0%)

Query: 1   MAST-TEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDK 59
           MAST  E ++RE+E   NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+K+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 60  DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
           +GNQWKERGAGTVKLLKHK TGKVRLVMRQSKTLKICANHL+   MSVQEH+GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 120 HAADYADGELKDELFCIRFGSVES 143
           HA D++DGELKDELFCIRF S+E+
Sbjct: 121 HATDFSDGELKDELFCIRFASIEN 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697102|ref|NP_200667.2| Ran-binding protein 1-c [Arabidopsis thaliana] gi|75275082|sp|P92985.1|RBP1C_ARATH RecName: Full=Ran-binding protein 1 homolog c gi|1732511|gb|AAB38776.1| Ran binding protein 1 homolog [Arabidopsis thaliana] gi|90568020|gb|ABD94080.1| At5g58590 [Arabidopsis thaliana] gi|332009690|gb|AED97073.1| Ran-binding protein 1-c [Arabidopsis thaliana]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/148 (79%), Positives = 133/148 (89%), Gaps = 1/148 (0%)

Query: 1   MAST-TEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDK 59
           MAST  E ++RE+E   NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+K+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 60  DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
           +GNQWKERGAGTVKLLKHK TGKVRLVMRQSKTLKICANHL+   MSVQEH+GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 120 HAADYADGELKDELFCIRFGSVESEYFF 147
           HA D++DGELKDELFCIRF S+E+   F
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTF 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2178798	219	RANBP1 "RAN binding protein 1"	0.821	0.652	0.805	3.9e-60
TAIR|locus:2007467	228	SIRANBP "AT1G07140" [Arabidops	0.793	0.605	0.827	7.3e-59
TAIR|locus:2060837	217	AT2G30060 "AT2G30060" [Arabido	0.821	0.658	0.805	7.3e-59
POMBASE|SPBC1773.07c	215	sbp1 "Ran GTPase binding prote	0.787	0.637	0.489	2.3e-30
UNIPROTKB|F1PA81	3047	F1PA81 "Uncharacterized protei	0.839	0.047	0.450	4.6e-30
UNIPROTKB|C9JJ34	163	RANBP1 "Ran-specific GTPase-ac	0.816	0.871	0.472	4.9e-30
UNIPROTKB|P49792	3224	RANBP2 "E3 SUMO-protein ligase	0.827	0.044	0.456	6.3e-30
UNIPROTKB|G4N530	247	MGG_05203 "Ran-specific GTPase	0.862	0.607	0.421	7.9e-30
MGI|MGI:894323	3053	Ranbp2 "RAN binding protein 2"	0.758	0.043	0.488	9.7e-30
RGD|1560047	3055	Ranbp2 "RAN binding protein 2"	0.758	0.043	0.488	9.7e-30

TAIR|locus:2178798 RANBP1 "RAN binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 116/144 (80%), Positives = 132/144 (91%)

Query:     1 MASTT-EGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDK 59
             MAST  E ++RE+E   NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+K+YRFDK
Sbjct:     1 MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query:    60 DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
             +GNQWKERGAGTVKLLKHK TGKVRLVMRQSKTLKICANHL+   MSVQEH+GN+KSC+W
Sbjct:    61 EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query:   120 HAADYADGELKDELFCIRFGSVES 143
             HA D++DGELKDELFCIRF S+E+
Sbjct:   121 HATDFSDGELKDELFCIRFASIEN 144

GO:0005634 "nucleus" evidence=ISM

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0000060 "protein import into nucleus, translocation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2007467 SIRANBP "AT1G07140" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 115/139 (82%), Positives = 124/139 (89%)

Query:     6 EGDHR-EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQW 64
             E +HR EEE   NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+KLYRFDKD NQW
Sbjct:     7 EHEHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQW 66

Query:    65 KERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADY 124
             KERGAGTVK LKHK TGK+RLVMRQSKTLKICANH V   MSVQEH GN+KSCVWHA D+
Sbjct:    67 KERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDF 126

Query:   125 ADGELKDELFCIRFGSVES 143
             ADGELKDELFCIRF S+E+
Sbjct:   127 ADGELKDELFCIRFASIEN 145

GO:0000060 "protein import into nucleus, translocation" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046907 "intracellular transport" evidence=IEA

TAIR|locus:2060837 AT2G30060 "AT2G30060" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 116/144 (80%), Positives = 130/144 (90%)

Query:     1 MASTTEGDHR-EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDK 59
             +++  E ++R EEE   NEDEDTGAQVAPIV+LEEVAVTTGEEDED ILDLK+KLYRFDK
Sbjct:     4 ISNEPERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDK 63

Query:    60 DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
             DG+QWKERGAGTVK LKH+V+GK+RLVMRQSKTLKICANHLV   MSVQEHAGNDKSCVW
Sbjct:    64 DGSQWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVW 123

Query:   120 HAADYADGELKDELFCIRFGSVES 143
             HA D++DGELKDELFCIRF SVE+
Sbjct:   124 HARDFSDGELKDELFCIRFASVEN 147

GO:0000060 "protein import into nucleus, translocation" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008536 "Ran GTPase binding" evidence=ISS

GO:0046907 "intracellular transport" evidence=IEA

POMBASE|SPBC1773.07c sbp1 "Ran GTPase binding protein Sbp1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 70/143 (48%), Positives = 92/143 (64%)

Query:    11 EEEVPHNEDEDT---GAQV--APIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWK 65
             +E+ P   DED      +V   PIVKL  V   T EE+E     ++AKL+RFDK  ++WK
Sbjct:    55 DEKKPAEGDEDAEPASPEVHFEPIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWK 114

Query:    66 ERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADY 124
             ERG G  +LLKHK TGK RLVMR+ KTLK+CANHL++P M +  + G+D+S VW  AAD 
Sbjct:   115 ERGTGDARLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADV 174

Query:   125 ADGELKDELFCIRFGSVESEYFF 147
             ++GE   E F IRF + E+   F
Sbjct:   175 SEGEPTAETFAIRFANSENANLF 197

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005525 "GTP binding" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006405 "RNA export from nucleus" evidence=ISO

GO:0006606 "protein import into nucleus" evidence=ISO

GO:0031291 "Ran protein signal transduction" evidence=IGI

UNIPROTKB|F1PA81 F1PA81 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 4.6e-30, P = 4.6e-30
 Identities = 68/151 (45%), Positives = 95/151 (62%)

Query:    16 HNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 74
             H +D+D G    P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+
Sbjct:  1105 HGDDDDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKI 1164

Query:    75 LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 134
             L+HK +GK+RL+MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E  
Sbjct:  1165 LRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQL 1224

Query:   135 CIRFGSVESEYFFSFIDSSKLNHVTSVLRLI 165
              IRF + E    F      K     S+L+ +
Sbjct:  1225 AIRFKTPEEAALFK----CKFEEAQSILKAL 1251

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0046907 "intracellular transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|C9JJ34 RANBP1 "Ran-specific GTPase-activating protein" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 69/146 (47%), Positives = 95/146 (65%)

Query:     2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DK 59
             A  T  DH +    + ++ +   Q  PIV L E  + T EEDE+ +  ++AKL+RF  + 
Sbjct:     4 AKDTHEDH-DTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASEN 62

Query:    60 DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
             D  +WKERG G VKLLKHK  G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW
Sbjct:    63 DLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVW 122

Query:   120 HA-ADYADGELKDELFCIRFGSVESE 144
             +  AD+AD   K EL  IRF + ESE
Sbjct:   123 NTHADFADECPKPELLAIRFLNAESE 148

GO:0046907 "intracellular transport" evidence=IEA

UNIPROTKB|P49792 RANBP2 "E3 SUMO-protein ligase RanBP2" [Homo sapiens (taxid:9606)]

 Score = 349 (127.9 bits), Expect = 6.3e-30, P = 6.3e-30
 Identities = 68/149 (45%), Positives = 94/149 (63%)

Query:    16 HNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 74
             H +D+D G    P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+
Sbjct:  1162 HGDDDDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKI 1221

Query:    75 LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 134
             L+HK +GK+RL+MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E  
Sbjct:  1222 LRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQL 1281

Query:   135 CIRFGSVESEYFFSFIDSSKLNHVTSVLR 163
              IRF + E    F      K     S+L+
Sbjct:  1282 AIRFKTPEEAALFK----CKFEEAQSILK 1306

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0044615 "nuclear pore nuclear basket" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0042405 "nuclear inclusion body" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=TAS

GO:0008536 "Ran GTPase binding" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|G4N530 MGG_05203 "Ran-specific GTPase-activating protein 1" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 67/159 (42%), Positives = 103/159 (64%)

Query:     2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKD 60
             A+   GD  +++ P +ED        P+++L E+V V T EE E+ +  ++AKL++F KD
Sbjct:    61 AAAAAGDD-DDQAPESED----VHFEPVIRLTEKVEVKTNEESEEQLFKMRAKLFKFVKD 115

Query:    61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
              ++WKERG G V+LLKH+  GK RLVMR+ KTLK+CANH ++P M +  + G+D+S VW+
Sbjct:   116 TSEWKERGTGDVRLLKHRENGKTRLVMRRDKTLKVCANHYIIPEMKLSPNVGSDRSWVWN 175

Query:   121 AA-DYADGELKDELFCIRFGSVESEYFF--SFIDSSKLN 156
             AA D ++GE +     IRF + E+   F  +F+ + K N
Sbjct:   176 AAADVSEGEPEGVTLAIRFANSENANSFKDAFLQAQKDN 214

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:894323 Ranbp2 "RAN binding protein 2" [Mus musculus (taxid:10090)]

 Score = 347 (127.2 bits), Expect = 9.7e-30, P = 9.7e-30
 Identities = 65/133 (48%), Positives = 89/133 (66%)

Query:    16 HNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 74
             H ++ED G    P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+
Sbjct:  1156 HGDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKI 1215

Query:    75 LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 134
             L+HK +GK+RL+MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E  
Sbjct:  1216 LRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQL 1275

Query:   135 CIRFGSVESEYFF 147
              IRF + E    F
Sbjct:  1276 AIRFKTPEEAALF 1288

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005643 "nuclear pore" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0031965 "nuclear membrane" evidence=ISO

GO:0042405 "nuclear inclusion body" evidence=ISO

GO:0044615 "nuclear pore nuclear basket" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046907 "intracellular transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

RGD|1560047 Ranbp2 "RAN binding protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 347 (127.2 bits), Expect = 9.7e-30, P = 9.7e-30
 Identities = 65/133 (48%), Positives = 89/133 (66%)

Query:    16 HNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 74
             H ++ED G    P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+
Sbjct:  1156 HGDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKI 1215

Query:    75 LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 134
             L+HK +GK+RL+MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E  
Sbjct:  1216 LRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQL 1275

Query:   135 CIRFGSVESEYFF 147
              IRF + E    F
Sbjct:  1276 AIRFKTPEEAALF 1288

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005643 "nuclear pore" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0031965 "nuclear membrane" evidence=ISO

GO:0042405 "nuclear inclusion body" evidence=ISO

GO:0044615 "nuclear pore nuclear basket" evidence=ISO

GO:0046907 "intracellular transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92985	RBP1C_ARATH	No assigned EC number	0.7905	0.8448	0.6712	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
cd13179	126	cd13179, RanBD_RanBP1, Ran-binding domain	3e-50
cd13176	116	cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-bin	3e-46
cd00835	111	cd00835, RanBD_family, Ran-binding domain	4e-45
pfam00638	122	pfam00638, Ran_BP1, RanBP1 domain	2e-42
smart00160	130	smart00160, RanBD, Ran-binding domain	2e-38
COG5171	211	COG5171, YRB1, Ran GTPase-activating protein (Ran-	2e-37
cd13171	112	cd13171, RanBD1_RanBP2_insect-like, Ran-binding pr	2e-32
cd13172	113	cd13172, RanBD2_RanBP2_insect-like, Ran-binding pr	6e-31
cd13177	117	cd13177, RanBD2_RanBP2_mammal-like, Ran-binding pr	6e-31
cd13178	117	cd13178, RanBD4_RanBP2_mammal-like, Ran-binding pr	1e-29
cd13173	110	cd13173, RanBD3_RanBP2_insect-like, Ran-binding pr	8e-28
cd13174	113	cd13174, RanBD4_RanBP2_insect-like, Ran-binding pr	2e-18
cd13175	106	cd13175, RanBD5_RanBP2_insect-like, Ran-binding pr	1e-14
cd13170	109	cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding d	3e-14
cd13180	113	cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-b	4e-12
cd13181	111	cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding dom	2e-08
cd13169	112	cd13169, RanBD_NUP50_plant, Ran-binding protein 2,	1e-05

>gnl|CDD|241333 cd13179, RanBD_RanBP1, Ran-binding domain

 Score =  157 bits (399), Expect = 3e-50
 Identities = 61/112 (54%), Positives = 80/112 (71%), Gaps = 3/112 (2%)

Query: 34  EVAVTTGEEDEDAILDLKAKLYRFDK--DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSK 91
           EV V T EEDE+ +  ++AKLYRFD   D  +WKERG G VK+LKHK T K+RL+MR+ K
Sbjct: 1   EVEVKTNEEDEEELFKMRAKLYRFDTENDPPEWKERGTGDVKILKHKETNKIRLLMRRDK 60

Query: 92  TLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVE 142
           TLKICANH + P M ++ + G+D++ VW+  AD+AD E K EL  IRF + E
Sbjct: 61  TLKICANHYITPEMKLKPNCGSDRAWVWNTPADFADEEPKPELLAIRFANAE 112

RanBP1 interacts specifically with GTP-charged Ran. RanBP1 does not activate GTPase activity of Ran, but does markedly increase GTP hydrolysis by the RanGTPase-activating protein (RanGAP1). In both mammalian cells and in yeast, RanBP1 acts as a negative regulator of Regulator of chromosome condensation 1 (RCC1) by inhibiting RCC1-stimulated guanine nucleotide release from Ran. In addition to Ran, RanBP1 has been shown to interact with Exportin-1 and Importin subunit beta-1 which docks the NPC at the cytoplasmic side of the nuclear pore complex. RabBP1 contains a single RanBD. The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 126

>gnl|CDD|241330 cd13176, RanBD1_RanBD3_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 1 and 3

 Score =  147 bits (372), Expect = 3e-46
 Identities = 54/104 (51%), Positives = 76/104 (73%)

Query: 39  TGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98
           TGEEDE+ +   +AKLYRFDKD  QWKERG G +K+L++  +GKVR++MR+ + LK+CAN
Sbjct: 1   TGEEDEEELFSHRAKLYRFDKDSKQWKERGIGDIKILQNPESGKVRILMRRDQVLKLCAN 60

Query: 99  HLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           H + P M ++ +AG+D+S VW A D+AD E K E   +RF + E
Sbjct: 61  HYITPDMKLKPNAGSDRSWVWTALDFADEEPKPEQLAVRFKTPE 104

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include human, chicken, frog, tunicates, sea urchins, ticks, sea anemones, and sponges. RanBD repeats 1 and 3 are present in this hierarchy. Length = 116

>gnl|CDD|241232 cd00835, RanBD_family, Ran-binding domain

 Score =  143 bits (364), Expect = 4e-45
 Identities = 51/99 (51%), Positives = 70/99 (70%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP 103
           E+ +   +AKLYRFDKD  +WKERG G +K+LKHK TGK R++MR+ +  K+C NHL+ P
Sbjct: 1   EEVLFSERAKLYRFDKDTKEWKERGVGDLKILKHKETGKYRILMRREQVGKVCLNHLITP 60

Query: 104 MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
            M ++  AG+DK+ VW A D +DGE K E F +RF + E
Sbjct: 61  EMKLKPTAGSDKAVVWTAVDDSDGEGKPETFALRFKTAE 99

The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these proteins have a single RanBD, with the exception of RanBD2 which has 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The RanBD proteins of the nuclear pore complex (NPC): nucleoporin 1 (NUP1), NUP2, NUP61, and Nuclear Pore complex Protein 9 (npp-9) are present in the parent, but specific models were not made due to lineage. To date there been no reports of inositol phosphate or phosphoinositide binding by Ran-binding proteins. Length = 111

>gnl|CDD|109686 pfam00638, Ran_BP1, RanBP1 domain

 Score =  137 bits (347), Expect = 2e-42
 Identities = 56/106 (52%), Positives = 79/106 (74%)

Query: 37  VTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKIC 96
           V +GEEDE+ +  ++AKL+RFD +  QWKERG G +K+LK+K  GKVR++MR+ + LK+C
Sbjct: 2   VKSGEEDEEVLFSVRAKLFRFDAEVKQWKERGVGDIKILKNKDDGKVRILMRRDQVLKVC 61

Query: 97  ANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           ANH + P M+++  AG+D+S VW AAD+ADGE K E   IRF + E
Sbjct: 62  ANHYITPDMTLKPLAGSDRSWVWTAADFADGEGKPEQLAIRFKTKE 107

Length = 122

>gnl|CDD|197549 smart00160, RanBD, Ran-binding domain

 Score =  127 bits (321), Expect = 2e-38
 Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 1/117 (0%)

Query: 27  APIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKV-TGKVRL 85
            P+V L +V V TGEEDE+ I   +AKLYRF  D  +WKERG G +K+LK K   GKVR+
Sbjct: 2   KPVVPLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRI 61

Query: 86  VMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           VMR+   LK+CANH +   M+++  AG++++  W   D+AD   K  L+ +RF + E
Sbjct: 62  VMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKE 118

Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase). Length = 130

>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]

 Score =  127 bits (320), Expect = 2e-37
 Identities = 61/142 (42%), Positives = 85/142 (59%), Gaps = 6/142 (4%)

Query: 12  EEVPHNEDEDTGAQ-----VAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKE 66
           E      DE  G +       P+V+L+ V + T EEDE  +   +AKL+RFD++  +WKE
Sbjct: 52  ENAVPEGDEGKGPESPNIHFEPVVELQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKE 111

Query: 67  RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYA 125
           RG G + +LKHK T K R+ MR+ KTLK+CANH + P   +Q + G+D+S VW   AD  
Sbjct: 112 RGTGDMIILKHKKTNKARITMRRDKTLKLCANHFINPEFKLQPNVGSDRSWVWMSTADTV 171

Query: 126 DGELKDELFCIRFGSVESEYFF 147
           +GE K + F IRF S E+   F
Sbjct: 172 EGEAKAQTFAIRFYSEENAKRF 193

Length = 211

>gnl|CDD|241325 cd13171, RanBD1_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 1

 Score =  111 bits (280), Expect = 2e-32
 Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 4/100 (4%)

Query: 44  EDAILDLKAKLYRF-DKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVL 102
           E+ +   +AKL+R+ DK   +WKERG G +K+LK+  TGKVRL+MR+ +  K+CANH + 
Sbjct: 1   EEVLFCARAKLFRYVDK---EWKERGIGNLKILKNPATGKVRLLMRREQVHKVCANHFIT 57

Query: 103 PMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
             M +      DK+ +W A D+AD  +  E  C+RF +VE
Sbjct: 58  KDMELTPMDKEDKAYIWAANDFADEVVVLEKLCVRFKTVE 97

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. The first RanBD is present in this hierarchy. Length = 112

>gnl|CDD|241326 cd13172, RanBD2_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 2

 Score =  107 bits (270), Expect = 6e-31
 Identities = 45/100 (45%), Positives = 63/100 (63%), Gaps = 1/100 (1%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-VTGKVRLVMRQSKTLKICANHLVL 102
           E+ + + +AKL RFDK   +WKERG G +KLL++K    KVRL+MR+ + LK+C N  + 
Sbjct: 1   EEVLFEHRAKLLRFDKATKEWKERGLGNIKLLRNKEDNNKVRLLMRREQVLKVCCNQRLT 60

Query: 103 PMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
             M  +    N K+  W A DY++GELK E F IRF + E
Sbjct: 61  KDMEFKYLTNNPKALTWCAQDYSEGELKPETFAIRFKTQE 100

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. The second RanBD is present in this hierarchy. Length = 113

>gnl|CDD|241331 cd13177, RanBD2_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2

 Score =  108 bits (270), Expect = 6e-31
 Identities = 46/104 (44%), Positives = 74/104 (71%)

Query: 39  TGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98
           TGEEDE  +   + KL+RFD + +QWKERG G +K+LK++V GK+R++MR+ + LK+CAN
Sbjct: 1   TGEEDEKVLYSQRVKLFRFDAEVSQWKERGVGNLKILKNEVNGKLRMLMRREQVLKVCAN 60

Query: 99  HLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           H +   M+++  +G+DK+ +W A D++DG+ K E    +F + E
Sbjct: 61  HWITTTMNLKPLSGSDKAWMWMANDFSDGDAKLEQLAAKFKTPE 104

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include human, chicken, frog, tunicates, sea urchins, ticks, sea anemones, and sponges. RanBD repeats 2 is present in this hierarchy. Length = 117

>gnl|CDD|241332 cd13178, RanBD4_RanBP2_mammal-like, Ran-binding protein 2, Ran binding domain repeats 2 and 4

 Score =  104 bits (261), Expect = 1e-29
 Identities = 45/104 (43%), Positives = 68/104 (65%)

Query: 39  TGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98
           +GEEDE+ +   +AKLYR+D+D  QWKERG G +K+L H      R++MR+ + LK+CAN
Sbjct: 1   SGEEDEEILFKERAKLYRWDRDVQQWKERGVGELKILFHTQKKYYRILMRRDQVLKVCAN 60

Query: 99  HLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           H++   +++     ++ + VW A DYADGE K E   +RF + E
Sbjct: 61  HVISKEITLTPLNTSNNALVWTATDYADGEGKVEQLAVRFKTKE 104

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include human, chicken, frog, tunicates, sea urchins, ticks, sea anemones, and sponges. RanBD repeats 2 and 4 are present in this hierarchy. Length = 117

>gnl|CDD|241327 cd13173, RanBD3_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 3

 Score = 99.9 bits (249), Expect = 8e-28
 Identities = 47/114 (41%), Positives = 72/114 (63%), Gaps = 5/114 (4%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP 103
           E+ +   +AKL+RF     +WKERG G VK+L+HK TGK+RL+MR+ + LKIC NH +  
Sbjct: 1   EEVLYSHRAKLFRFVD--KEWKERGLGDVKILRHKETGKLRLLMRRDQVLKICLNHALTE 58

Query: 104 MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE-SEYFFSFIDSSKLN 156
              ++    ++KS +W A D+++GE + E F IRF + E ++ F   ID +K  
Sbjct: 59  --ELEFRKKDEKSWMWAAHDFSEGESELERFAIRFKNAEIAQGFMKAIDDAKNE 110

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. The third RanBD is present in this hierarchy. Length = 110

>gnl|CDD|241328 cd13174, RanBD4_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 4

 Score = 75.9 bits (187), Expect = 2e-18
 Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP 103
           E  +   +AKLYRFD D  +WKERG G +K+L H      RL+MR+ +  K+  N L+  
Sbjct: 1   ETKLFGERAKLYRFDADTKEWKERGVGEMKILYHPELNTYRLLMRREQVHKVVLNMLITS 60

Query: 104 MMSVQEHAGNDKSCVWHAADYADGELKD-ELFCIRFGSVE 142
            + ++    +DKS  W   +YA+ +  + E   +RF + E
Sbjct: 61  DLQLRPMNTSDKSFTWGGMNYAEADEPEVETLAVRFKNEE 100

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. The fourth RanBD is present in this hierarchy. Length = 113

>gnl|CDD|241329 cd13175, RanBD5_RanBP2_insect-like, Ran-binding protein 2, Ran binding domain repeat 5

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 6/105 (5%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP 103
           E+ +   +AKLYR+D +  +WKERG G +K+L HK     R+V++   T +I +N ++  
Sbjct: 1   EEVVFSHRAKLYRYDAETKEWKERGVGEMKILHHKGA---RIVLKDDDTDEILSNTIIAM 57

Query: 104 MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFS 148
             S++      K C+W A DYA        F   F SV++   F 
Sbjct: 58  QTSLRV---EGKECIWSAIDYALEPPTRRTFRATFSSVDAAQEFQ 99

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP-importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The members here include insects and nematodes. The fifth RanBD is present in this hierarchy. Length = 106

>gnl|CDD|241324 cd13170, RanBD_NUP50, Nucleoporin 50 Ran-binding domain

 Score = 64.6 bits (158), Expect = 3e-14
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL-KICANHLVL 102
           EDA+  ++ KL+   KD  +WK++G GT+ L K K T K RL++R   +L KI  N L+ 
Sbjct: 1   EDAVYSVRCKLFVK-KDDGEWKDKGVGTLYLKKVKDTSKARLLVRADTSLGKILLNILLY 59

Query: 103 PMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           P M V     N+   V      A+G      F +R  + E
Sbjct: 60  PGMPVTVTGKNNVMLVCVPNPPAEGGPV--TFLLRVKTPE 97

NUP50 acts as a cofactor for the importin-alpha:importin-beta heterodimer, which allows for transportation of many nuclear-targeted proteins through nuclear pore complexes. It is thought to function primarily at the terminal stages of nuclear protein import to coordinate import complex disassembly and importin recycling. NUP50 is composed of a N-terminal NUP50 domain which binds the C-terminus of importin-beta, a central domain which binds importin-beta, and a C-terminal RanBD which binds importin-beta through Ran-GTP. NUP50:importin-alpha then binds cargo and can stimulate nuclear import. The N-terminal domain of NUP50 is also able to displace nuclear localization signals from importin-alpha. NUP50 interacts with cyclin-dependent kinase inhibitor 1B which binds to cyclin E-CDK2 or cyclin D-CDK4 complexes and prevents its activation, thereby controling the cell cycle progression at G1. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 109

>gnl|CDD|241334 cd13180, RanBD_RanBP3, Ran-binding protein 3 Ran-binding domain

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 43  DEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKV---RLVMRQSKTLKICANH 99
            E  +L +  KL+ FDK    W ERG GT++L            RLVMR   TL++  N 
Sbjct: 1   GERNVLQINCKLFAFDKSKQSWVERGRGTLRLNDKASEDGPFQSRLVMRTQGTLRVILNT 60

Query: 100 LVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDSSKLNH 157
            + P M+V E A ++KS    A D  DGE+K  +F I+    ++   F+ +DS     
Sbjct: 61  KIWPGMTV-ERA-SEKSLRITAMD-PDGEVK--VFLIQASPKDAAQLFAALDSRIQAL 113

RanBP3, a Ran-interacting nuclear protein, unlike the related proteins RanBP1 and RanBP2, which promote disassembly of the export complex in the cytosol, acts as a CRM1 cofactor, enhancing nuclear export signal (NES) export by stabilizing the export complex in the nucleus. CRM1/Exportin1 is responsible for exporting many proteins and ribonucleoproteins from the nucleus to the cytosol. RanBP3 also alters the cargo selectivity of CRM1, promoting recognition of the NES of HIV-1 Rev and of other cargos while deterring recognition of the import adaptor protein Snurportin1. RanBP3 contains a N-terminal nuclear localization signal (NLS), 2 FxFG motifs, and a single RanBD. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 113

>gnl|CDD|241335 cd13181, RanBD_NUP2, Nucleoporin 2 Ran-binding domain

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 43  DEDAILDLKAKLYRFD--KDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHL 100
           +E+ +   +AKL  FD     + +  +G G +KLLK+K TGK R+++R   +L++  N L
Sbjct: 1   NEEVLYTKRAKLMLFDPSNKESPYTSKGVGELKLLKNKDTGKSRILVRAEGSLRVLLNTL 60

Query: 101 VLPMMSVQ 108
           VL  +  +
Sbjct: 61  VLKDVKYE 68

Yeast protein Nup2 transiently associates with Nuclear pore complexes (NPCs) and when artificially tethered to DNA, can prevent the spread of transcriptional activation or repression between flanking genes, a function termed boundary activity (BA). Nup2 and the Ran guanylyl-nucleotide exchange factor, Prp20, interact at specific chromatin regions and enable the NPC to play an active role in chromatin organization. Nup60p, the nup responsible for anchoring Nup2 and the Mlp proteins to the NPC is required for Nup2-dependent BA. Nup2 contains an N-terminal Nup50 family domain and a C-terminal RanBD. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. Length = 111

>gnl|CDD|241323 cd13169, RanBD_NUP50_plant, Ran-binding protein 2, repeat 1

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP 103
           E A+      L+ F      WKERG G +++     TGK RLVMR     ++  N  + P
Sbjct: 1   EKAVFSGDGALFEFIT--GGWKERGRGELRVNLST-TGKARLVMRAKGNYRLLLNANLFP 57

Query: 104 MMSV---QEHAGNDKSCVWHAADYADG 127
            M +       G   +CV  AA    G
Sbjct: 58  DMKLTKMMGGKGVTFACVNAAAGAKAG 84

RanBP2 (also called E3 SUMO-protein ligase RanBP2, 358 kDa nucleoporin, and nuclear pore complex (NPC) protein Nup358) is a giant nucleoporin that localizes to the cytosolic face of the NPC. RanBP2 contains a leucine-rich region, 8 zinc-finger motifs, a cyclophilin A homologous domain, and 4 RanBDs. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran. All eukaryotic cells contain RanBP1, but in vertebrates however, the main RanBP seems to be RanBP2. There is no RanBP2 ortholog in yeast. Transport complex disassembly is accomplished by a small ubiquitin-related modifier-1 (SUMO-1)-modified version of RanGAP that is bound to RanBP2. RanBP1 acts as a second line of defense against exported RanGTP#importin complexes which have escaped from dissociation by RanBP2. RanBP2 also interacts with the importin subunit beta-1. RabBD shares structural similarity to the PH domain, but lacks detectable sequence similarity. The first RanBD2 is present in this hierarchy. Length = 112

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
smart00160	130	RanBD Ran-binding domain. Domain of apporximately	100.0
cd00835	122	RanBD Ran-binding domain. Ran-binding domain; This	100.0
PF00638	122	Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is	100.0
COG5171	211	YRB1 Ran GTPase-activating protein (Ran-binding pr	100.0
KOG0864	215	consensus Ran-binding protein RANBP1 and related R	99.84
KOG2724	487	consensus Nuclear pore complex component NPAP60L/N	99.64
KOG0866	327	consensus Ran-binding protein RANBP3 [Intracellula	99.39
cd00837	104	EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog	99.38
PF00568	111	WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1	98.91
cd01207	111	Ena-Vasp Enabled-VASP-type homology (EVH1) domain.	98.85
cd01206	111	Homer Homer type EVH1 domain. Homer type EVH1 doma	98.7
smart00461	106	WH1 WASP homology region 1. Region of the Wiskott-	97.99
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.85
cd01205	105	WASP WASP-type EVH1 domain. WASP-type EVH1 domain.	95.56
PF06058	122	DCP1: Dcp1-like decapping family; InterPro: IPR010	92.44
KOG4590	409	consensus Signal transduction protein Enabled, con	91.05
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	88.46
COG5167	776	VID27 Protein involved in vacuole import and degra	82.61

>smart00160 RanBD Ran-binding domain

Probab=100.00  E-value=5.9e-41  Score=257.23  Aligned_cols=125  Identities=45%  Similarity=0.781  Sum_probs=120.0

Q ss_pred             cceeeeceeeeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCC-CeEEEEEEeCCcceeEeeeeecCC
Q 030641           26 VAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVT-GKVRLVMRQSKTLKICANHLVLPM  104 (174)
Q Consensus        26 f~piv~L~~ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t-~k~RIvmR~d~~~kvlLN~~I~~~  104 (174)
                      |+|+++|++|++.||||+|+++|++|||||+|++++++|++||+|+||||+++++ +++|||||++++++|+|||+|+++
T Consensus         1 ~~~~~~l~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~   80 (130)
T smart00160        1 FKPVVPLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKS   80 (130)
T ss_pred             CCCcccCccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCC
Confidence            7899999999999999999999999999999998889999999999999999998 999999999999999999999999


Q ss_pred             ceeeecCCCCeeEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhch
Q 030641          105 MSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFI  150 (174)
Q Consensus       105 m~~~~~~~~~k~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~i  150 (174)
                      |+++++.++.++++|++.|+++++.++++|+|||+++++|++|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~  126 (130)
T smart00160       81 MTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNI  126 (130)
T ss_pred             cEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHH
Confidence            9999887778899999999999988999999999999999999964

Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).

>cd00835 RanBD Ran-binding domain

Probab=100.00  E-value=2.2e-38  Score=239.79  Aligned_cols=116  Identities=51%  Similarity=0.836  Sum_probs=110.2

Q ss_pred             eeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCC
Q 030641           35 VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGND  114 (174)
Q Consensus        35 ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~  114 (174)
                      |++.||||+|++||+.|||||+|++++++|++||+|+|||+++++++++|||||++++++|+||++|+++|+++++.+++
T Consensus         1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~   80 (122)
T cd00835           1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSD   80 (122)
T ss_pred             CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCC
Confidence            57899999999999999999999988899999999999999999999999999999999999999999999999987678


Q ss_pred             eeEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhch
Q 030641          115 KSCVWHAADYADGELKDELFCIRFGSVESEYFFSFI  150 (174)
Q Consensus       115 k~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~i  150 (174)
                      ++++|++.|++++++++++|+|||++++.|++|...
T Consensus        81 k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~  116 (122)
T cd00835          81 KSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEA  116 (122)
T ss_pred             cEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHH
Confidence            999999999988778899999999999999999963

Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.

>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm

Probab=100.00  E-value=2.2e-37  Score=233.31  Aligned_cols=114  Identities=52%  Similarity=0.802  Sum_probs=105.6

Q ss_pred             eeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCe
Q 030641           36 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDK  115 (174)
Q Consensus        36 e~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k  115 (174)
                      +++||||+|++||+.|||||+|++++++|++||+|+|||+++++++++|||||++++++|+|||+|+++|++++..++.+
T Consensus         1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~   80 (122)
T PF00638_consen    1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEK   80 (122)
T ss_dssp             CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTT
T ss_pred             CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCc
Confidence            57899999999999999999999888999999999999999999999999999999999999999999999999888889


Q ss_pred             eEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641          116 SCVWHAADYADGELKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       116 ~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~  149 (174)
                      +++|++.|++++.+++.+|+|||++++.|++|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~  114 (122)
T PF00638_consen   81 SLVWTAIDYADEEGKPETYLIRFKSAEDADEFKK  114 (122)
T ss_dssp             EEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHH
T ss_pred             EEEEEeccccCCCCceEEEEEEECCHHHHHHHHH
Confidence            9999999999988899999999999999999996

Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....

>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]

Probab=100.00  E-value=1e-37  Score=247.50  Aligned_cols=140  Identities=42%  Similarity=0.727  Sum_probs=132.3

Q ss_pred             CCCCCCCccceeeeceeeeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCcceeEe
Q 030641           18 EDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICA   97 (174)
Q Consensus        18 ~e~~~~~~f~piv~L~~ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlL   97 (174)
                      .++.++.+|+|+|.|+.+.+++-||||.++|.+|||||+|+.+.+.|++||.|+++|++|+.|++.||+||+|++++||+
T Consensus        63 ~pesp~ihfepvV~l~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklca  142 (211)
T COG5171          63 GPESPNIHFEPVVELQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCA  142 (211)
T ss_pred             CCCCCCcchHHHHHHHhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhhh
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCceeeecCCCCeeEEEE-eeecCCCCceeeEEEEEeCCHHHHHHhhc--hhhhcccc
Q 030641           98 NHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVESEYFFSF--IDSSKLNH  157 (174)
Q Consensus        98 N~~I~~~m~~~~~~~~~k~~~~~-~~d~~dg~~k~~~~liRfks~e~A~eF~~--i~~~k~n~  157 (174)
                      ||.|.|.|+++|+.+++++|+|. ..|.++|+.+.++|+|||-+.++|+.|+.  ..+|..|.
T Consensus       143 NH~i~Pe~kl~PnvgsdrsWvw~~taD~~Egea~a~tFairF~s~Ena~~FkEefek~qe~N~  205 (211)
T COG5171         143 NHFINPEFKLQPNVGSDRSWVWMSTADTVEGEAKAQTFAIRFYSEENAKRFKEEFEKGQEHNE  205 (211)
T ss_pred             hhccCcceeccCCCCcccceEEEeecccccCcceeeEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 46999999999999999999999999994  46777764

>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.3e-22  Score=167.53  Aligned_cols=130  Identities=46%  Similarity=0.753  Sum_probs=121.8

Q ss_pred             CCCCCCccceeeeceeeeeeccCccceeEEEeee-eEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCc-ceeE
Q 030641           19 DEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKA-KLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKT-LKIC   96 (174)
Q Consensus        19 e~~~~~~f~piv~L~~ve~~tGEEdE~~lf~~ra-KLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~-~kvl   96 (174)
                      ++++..+++|++.+..+.+.+|+++|.++|..++ +||.|+.+.++|++||.|.++|++|++++..|++||+|++ +++|
T Consensus        31 ~~~~~~~~~~~~~~~~~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~  110 (215)
T KOG0864|consen   31 EESPAKQVEPQEELEKVEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVC  110 (215)
T ss_pred             ccCccccccccccccchhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhhc
Confidence            4777789999999999999999999999999996 9999999999999999999999999999999999999999 7999


Q ss_pred             eeeeecCCceeeecCCCCeeEEE-EeeecCCCCceeeEEEEEeCCHHH-HHHhh
Q 030641           97 ANHLVLPMMSVQEHAGNDKSCVW-HAADYADGELKDELFCIRFGSVES-EYFFS  148 (174)
Q Consensus        97 LN~~I~~~m~~~~~~~~~k~~~~-~~~d~~dg~~k~~~~liRfks~e~-A~eF~  148 (174)
                      .||+|.++|++.++....++++| ++.|++++.....+|.|||.+.+. ..-|.
T Consensus       111 sn~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e~s~~~f~  164 (215)
T KOG0864|consen  111 SNHFIGPSFKLEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVESSGKAFK  164 (215)
T ss_pred             ccccccCcccccCCcccCcchhhhhhhhhcccccchhHHHHHhhhhcccchhhH
Confidence            99999999999999888888998 578999999999999999999988 66776

>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=3.7e-16  Score=138.43  Aligned_cols=111  Identities=20%  Similarity=0.269  Sum_probs=89.0

Q ss_pred             eeeeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeC-CcceeEeeeeecCCceeeecC
Q 030641           33 EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQS-KTLKICANHLVLPMMSVQEHA  111 (174)
Q Consensus        33 ~~ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d-~~~kvlLN~~I~~~m~~~~~~  111 (174)
                      ++|+...--| ++.+|+.|||+|++..  +.+.++|+|+|||..... ++..|++|.+ ++|+|+||..|+++|+++++.
T Consensus       370 pkve~~ev~e-dda~ysKkckvfykKd--KEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~g  445 (487)
T KOG2724|consen  370 PKVETVEVQE-DDAVYSKKCKVFYKKD--KEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVG  445 (487)
T ss_pred             CeeEeecccC-ccchhccccceEEEec--ccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceecc
Confidence            3444444333 4889999999999965  799999999999987765 9999999986 478999999999999999986


Q ss_pred             CCCeeEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhch
Q 030641          112 GNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFI  150 (174)
Q Consensus       112 ~~~k~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~i  150 (174)
                      ++...|+  |.. ..+...|+++|||||+++.|++|..+
T Consensus       446 knnvlIv--cvp-~~e~t~p~TmLIRvktad~aD~L~~k  481 (487)
T KOG2724|consen  446 KNNVLIV--CVP-PSESTEPATMLIRVKTADGADKLTDK  481 (487)
T ss_pred             CCceEEE--EeC-CcccccceeEEEEecccchHHHHHHH
Confidence            5543333  333 33446899999999999999999963

>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=9.7e-14  Score=119.63  Aligned_cols=109  Identities=35%  Similarity=0.493  Sum_probs=93.9

Q ss_pred             eceeeeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCC----eEEEEEEeCCcceeEeeeeecCCce
Q 030641           31 KLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQSKTLKICANHLVLPMMS  106 (174)
Q Consensus        31 ~L~~ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~----k~RIvmR~d~~~kvlLN~~I~~~m~  106 (174)
                      .+..|++.+|||+|.++|++.||+|.|++-...|.++|.|.+|++....++    ..|+|||..++++|++|..||..|.
T Consensus       143 ~~~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~  222 (327)
T KOG0866|consen  143 GLSAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQ  222 (327)
T ss_pred             cceeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHH
Confidence            356899999999999999999999999997789999999999999877543    4899999999999999999999999


Q ss_pred             eeecCCCCeeEEEEeeecCCCCceeeEEEEEeCCHHH
Q 030641          107 VQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVES  143 (174)
Q Consensus       107 ~~~~~~~~k~~~~~~~d~~dg~~k~~~~liRfks~e~  143 (174)
                      .++.  +.++++.+++|.++..  ...|+++++....
T Consensus       223 ~ek~--sq~~ir~~a~~~e~~~--v~vFl~~~~~~rt  255 (327)
T KOG0866|consen  223 IEKA--SQKSIRITAMDTEGQG--VKVFLISASSKRT  255 (327)
T ss_pred             Hhhh--cccceeeccccccCCc--ceEEEeeccccch
Confidence            9874  5678999999976543  3478888876544

>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain

Probab=99.38  E-value=2.2e-11  Score=89.96  Aligned_cols=96  Identities=20%  Similarity=0.293  Sum_probs=83.7

Q ss_pred             ceeEEEeeeeEEEEccCCCCceee--eeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEe
Q 030641           44 EDAILDLKAKLYRFDKDGNQWKER--GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA  121 (174)
Q Consensus        44 E~~lf~~raKLy~~~~~~~~WkeR--G~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~  121 (174)
                      +.+|+.++|.||.+++++++|..+  |.|.+.+.++...+.+||++++-+..++++|+.|+++|.+.+.  .+....|..
T Consensus         1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~--~~~Fh~w~~   78 (104)
T cd00837           1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQA--TPFFHQWED   78 (104)
T ss_pred             CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeec--CCeEEEEEc
Confidence            367899999999999988999999  9999999999888889999999889999999999999999763  455666653


Q ss_pred             eecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641          122 ADYADGELKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       122 ~d~~dg~~k~~~~liRfks~e~A~eF~~  149 (174)
                      .   +     ..|-+.|.+.++|++|..
T Consensus        79 ~---~-----~~~GL~F~se~eA~~F~~   98 (104)
T cd00837          79 D---N-----CVYGLNFASEEEAAQFRK   98 (104)
T ss_pred             C---C-----cEEEEeeCCHHHHHHHHH
Confidence            2   1     279999999999999985

EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events

Probab=98.91  E-value=8.6e-08  Score=71.38  Aligned_cols=96  Identities=18%  Similarity=0.250  Sum_probs=81.0

Q ss_pred             ceeEEEeeeeEEEEccCCCC-cee-eeeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEe
Q 030641           44 EDAILDLKAKLYRFDKDGNQ-WKE-RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA  121 (174)
Q Consensus        44 E~~lf~~raKLy~~~~~~~~-Wke-RG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~  121 (174)
                      ..++..++|.||..++.+++ |.. .|.|.+.+.++.....+||.++.-+.+++++|+.|+++|.+...  .+....|..
T Consensus         8 ~~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~--~~~Fh~f~~   85 (111)
T PF00568_consen    8 CQSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKA--RPFFHQFED   85 (111)
T ss_dssp             EEEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEE--SSSEEEEEE
T ss_pred             ceEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeC--CCcEEEEEe
Confidence            37899999999999887666 999 99999999998877889999999668999999999999999874  445566652


Q ss_pred             eecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641          122 ADYADGELKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       122 ~d~~dg~~k~~~~liRfks~e~A~eF~~  149 (174)
                      .+        ..|-|.|.+.++|..|..
T Consensus        86 ~~--------~~~GLnF~se~eA~~F~~  105 (111)
T PF00568_consen   86 DD--------CVYGLNFASEEEADQFYK  105 (111)
T ss_dssp             TT--------CEEEEEESSHHHHHHHHH
T ss_pred             CC--------eEEEEecCCHHHHHHHHH
Confidence            11        189999999999999985

This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....

>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain

Probab=98.85  E-value=5e-08  Score=73.24  Aligned_cols=98  Identities=20%  Similarity=0.431  Sum_probs=81.7

Q ss_pred             ceeEEEeeeeEEEEccCCCCceeeeeE-----EEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEE
Q 030641           44 EDAILDLKAKLYRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV  118 (174)
Q Consensus        44 E~~lf~~raKLy~~~~~~~~WkeRG~G-----~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~  118 (174)
                      |..|+++||..|.+|+.++.|..-|-|     .+.|.+++..+.+||+=|+..-.++++|..|+++|++.+.  .+..-.
T Consensus         1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~--~p~Fh~   78 (111)
T cd01207           1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQA--TPTFHQ   78 (111)
T ss_pred             CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecCCceeeec--CCccee
Confidence            568999999999999999999987775     7888888877889999998777899999999999999873  444555


Q ss_pred             EEeeecCCCCceeeEEEEEeCCHHHHHHhhchh
Q 030641          119 WHAADYADGELKDELFCIRFGSVESEYFFSFID  151 (174)
Q Consensus       119 ~~~~d~~dg~~k~~~~liRfks~e~A~eF~~i~  151 (174)
                      |.     ++   ...|=|-|.+.++|..|...-
T Consensus        79 w~-----~~---~~v~GLnF~Se~eA~~F~~~v  103 (111)
T cd01207          79 WR-----DA---RQVYGLNFGSKEDATMFASAM  103 (111)
T ss_pred             ee-----cC---CeEEeeccCCHHHHHHHHHHH
Confidence            54     22   148999999999999999643

Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>cd01206 Homer Homer type EVH1 domain

Probab=98.70  E-value=1.2e-07  Score=70.78  Aligned_cols=96  Identities=18%  Similarity=0.333  Sum_probs=76.5

Q ss_pred             ceeEEEeeeeEEEEccCC-CCceeeeeEEE--EEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEE
Q 030641           44 EDAILDLKAKLYRFDKDG-NQWKERGAGTV--KLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH  120 (174)
Q Consensus        44 E~~lf~~raKLy~~~~~~-~~WkeRG~G~L--kl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~  120 (174)
                      |..||+.||..|.||+.+ +.|..-|-|..  ++..+.....+|||=+.+  .+++||..|.++|++.+.  +++.-.|.
T Consensus         3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~--~~~iINc~i~~~~~y~ka--s~~FhQWr   78 (111)
T cd01206           3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG--TKAIINSTITPNMTFTKT--SQKFGQWA   78 (111)
T ss_pred             ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC--cEEEEeccccCCcceeec--cccccccc
Confidence            788999999999999975 59998887744  445676678899999875  499999999999999874  44455554


Q ss_pred             eeecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641          121 AADYADGELKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       121 ~~d~~dg~~k~~~~liRfks~e~A~eF~~  149 (174)
                           |.. .-+.|=|-|.+.++|+.|..
T Consensus        79 -----D~R-~~tVyGLnF~Sk~ea~~F~~  101 (111)
T cd01206          79 -----DSR-ANTVYGLGFSSEQQLTKFAE  101 (111)
T ss_pred             -----ccc-cceeeecccCCHHHHHHHHH
Confidence                 321 23689999999999999984

Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>smart00461 WH1 WASP homology region 1

Probab=97.99  E-value=0.00029  Score=52.16  Aligned_cols=95  Identities=19%  Similarity=0.289  Sum_probs=73.5

Q ss_pred             ceeEEEeeeeEEEEccCCCCceeeeeE-EEEEEEeC--CCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEE
Q 030641           44 EDAILDLKAKLYRFDKDGNQWKERGAG-TVKLLKHK--VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH  120 (174)
Q Consensus        44 E~~lf~~raKLy~~~~~~~~WkeRG~G-~Lkl~~~~--~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~  120 (174)
                      +.++...+|-.+.|+..++.|...|.| .+.+....  .+.-+||+=+..+. ++++|+.|+++|.+.+.  .+..-.|.
T Consensus         3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~--~~~Fh~f~   79 (106)
T smart00461        3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQA--TPTFHQWA   79 (106)
T ss_pred             CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeec--CCceEEEE
Confidence            567888999999998877889999999 77776543  33457888887544 99999999999999863  34344443


Q ss_pred             eeecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641          121 AADYADGELKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       121 ~~d~~dg~~k~~~~liRfks~e~A~eF~~  149 (174)
                      .     +   -..|=+-|.+.++|+.|..
T Consensus        80 ~-----~---~~~~GLnF~se~EA~~F~~  100 (106)
T smart00461       80 D-----D---KCVYGLNFASEEEAKKFRK  100 (106)
T ss_pred             e-----C---CeEEEeecCCHHHHHHHHH
Confidence            2     1   1379999999999999985

Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.85  E-value=0.035  Score=54.09  Aligned_cols=104  Identities=17%  Similarity=0.152  Sum_probs=75.7

Q ss_pred             ccCccceeEEEeeeeEEEEccCCCCceeeeeE-EEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeE
Q 030641           39 TGEEDEDAILDLKAKLYRFDKDGNQWKERGAG-TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC  117 (174)
Q Consensus        39 tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G-~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~  117 (174)
                      ...+....++...|+||.|+..++.|.-.+.. .++|.+.   |+.-..+...+..+.+|++.|.+.|++.-. ....++
T Consensus       242 ~~p~~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~---~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~-~e~lSF  317 (794)
T PF08553_consen  242 APPEAGEILASESAELYLYDPPTGKFVLQDSSVTAKIIET---GKWEYWLQIEGKDKIWLGQPVSSDMNPVFN-FEHLSF  317 (794)
T ss_pred             cCCCccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEc---CCeEEEEEEecCCceEEeeeccCCcCeEEE-cceeEE
Confidence            33444558999999999999988999877643 3555554   454444555556678899999999997754 234577


Q ss_pred             EEEeeecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641          118 VWHAADYADGELKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       118 ~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~  149 (174)
                      +|..... +  +...+|+|||++.+.-..|..
T Consensus       318 iFN~~~~-~--~~~~sw~lkF~~~~~~~~F~~  346 (794)
T PF08553_consen  318 IFNYYTE-D--GSAYSWLLKFKDQEDYERFQE  346 (794)
T ss_pred             EEEeEcC-C--CceEEEEEEeCCHHHHHHHHH
Confidence            8875431 2  267799999999999999994

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd01205 WASP WASP-type EVH1 domain

Probab=95.56  E-value=0.67  Score=34.50  Aligned_cols=93  Identities=18%  Similarity=0.234  Sum_probs=68.2

Q ss_pred             eeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeE--EEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEee
Q 030641           45 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKV--RLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA  122 (174)
Q Consensus        45 ~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~--RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~  122 (174)
                      .++..+=+.||.-.++.+.|.-...|.+-+-+......+  ||+=..  .++++..+-|+.+|.+...    +..- +..
T Consensus         5 ~il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~--~~~v~weqElY~~f~y~~~----r~fF-htF   77 (105)
T cd01205           5 KILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIK--ANRIIWEQELYDNFEYQQP----RPFF-HTF   77 (105)
T ss_pred             eEEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEcc--CCcEEEEEEcccCcEEccC----CCcE-EEE
Confidence            456667789999877778999999999999887644443  554444  4899999999999998753    2222 222


Q ss_pred             ecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641          123 DYADGELKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       123 d~~dg~~k~~~~liRfks~e~A~eF~~  149 (174)
                      .-.+     -++-+.|.+.++|+.|..
T Consensus        78 e~d~-----c~~GL~Fade~EA~~F~k   99 (105)
T cd01205          78 EGDD-----CVVGLNFADETEAAEFRK   99 (105)
T ss_pred             eccC-----cEEEEEECCHHHHHHHHH
Confidence            2112     268899999999999985

WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.

>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping

Probab=92.44  E-value=3.7  Score=31.08  Aligned_cols=90  Identities=18%  Similarity=0.381  Sum_probs=60.0

Q ss_pred             EeeeeEEEEccCCCCceeeee-EEEEEEEeCCCCeEEEE-EEeCCcceeEeeeeecCCceeeecCCCCeeEEEEeeecCC
Q 030641           49 DLKAKLYRFDKDGNQWKERGA-GTVKLLKHKVTGKVRLV-MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYAD  126 (174)
Q Consensus        49 ~~raKLy~~~~~~~~WkeRG~-G~Lkl~~~~~t~k~RIv-mR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~~d  126 (174)
                      ...|-||.|+..+++|...|+ |+|-|-+.....+++++ |=+.+...++..  |.+++.++..   +..+.+.  +   
T Consensus        26 a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~---~~~l~~r--~---   95 (122)
T PF06058_consen   26 ASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEP--ITPDLDFELQ---DPYLIYR--N---   95 (122)
T ss_dssp             EEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEE--E-SGGGEEEE---TTEEEEE--E---
T ss_pred             CCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeee--cCCCcEEEEe---CCEEEEE--c---
Confidence            367999999998999998886 89998765545566644 444445555544  7888888764   2245554  1   


Q ss_pred             CCceeeEEEEEeCCHHHHHHhhch
Q 030641          127 GELKDELFCIRFGSVESEYFFSFI  150 (174)
Q Consensus       127 g~~k~~~~liRfks~e~A~eF~~i  150 (174)
                      +.  ..-|-|=|=+++++++....
T Consensus        96 ~~--~~I~GiWf~~~~d~~ri~~~  117 (122)
T PF06058_consen   96 DN--QEIYGIWFYDDEDRQRIYNL  117 (122)
T ss_dssp             TT--TEEEEEEESSHHHHHHHHHH
T ss_pred             CC--ceEEEEEEEeHHHHHHHHHH
Confidence            11  14688999999998887654

In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.

>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]

Probab=91.05  E-value=0.23  Score=45.05  Aligned_cols=84  Identities=21%  Similarity=0.441  Sum_probs=61.7

Q ss_pred             EEccCCCCceeeeeE-----EEEEEEeCCCCeEEEEEEeCCc-ceeEeeeeecCCceeeecCCCCeeEEEEeeecCCCCc
Q 030641           56 RFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGEL  129 (174)
Q Consensus        56 ~~~~~~~~WkeRG~G-----~Lkl~~~~~t~k~RIvmR~d~~-~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~~dg~~  129 (174)
                      .+|...+.|.--|.|     .++|..|....-+|||-|.-+- ..|+||..|.++++|.+....  .-.|-     +.  
T Consensus         2 ~ydd~~k~W~p~g~g~~~~s~V~~~~h~~~n~frVvg~k~qdd~~vVlnC~I~kGlkYnkatpt--FHqWR-----~a--   72 (409)
T KOG4590|consen    2 TYDDSQKGWLPAGGGGAALSKVRIYHHTSGNTFRVVGRKSQDDQQVVLNCLILKGLKYNKATPT--FHQWR-----DA--   72 (409)
T ss_pred             cccccccccccccccCcccceeEEEeeccCCceeEEeeecccCcccccccccccCcceeecccc--hhhhh-----hh--
Confidence            466667889877743     3556566666789999998665 889999999999999764322  22232     22  


Q ss_pred             eeeEEEEEeCCHHHHHHhhc
Q 030641          130 KDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       130 k~~~~liRfks~e~A~eF~~  149 (174)
                       .+.|-+.|.+.++|.-|..
T Consensus        73 -rqvyGLnFqs~~DA~~Fa~   91 (409)
T KOG4590|consen   73 -RQVYGLTFQSEQDARAFAR   91 (409)
T ss_pred             -hhhhcccccChhhhhhhhh
Confidence             3579999999999999985

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=88.46  E-value=0.67  Score=43.13  Aligned_cols=86  Identities=21%  Similarity=0.301  Sum_probs=59.4

Q ss_pred             eeEEEEccCCCCceeeee-EEEEEEEeCCCC--eEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEeeecCCCC
Q 030641           52 AKLYRFDKDGNQWKERGA-GTVKLLKHKVTG--KVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGE  128 (174)
Q Consensus        52 aKLy~~~~~~~~WkeRG~-G~Lkl~~~~~t~--k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~~dg~  128 (174)
                      ++||+-+.+...|..+|. |-|-|-+.....  -.||+-..+  ++||..+.|+.+|.|..    ++.+. +.+.-.|+ 
T Consensus        45 VqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY~nf~y~q----~r~ff-htFegddc-  116 (569)
T KOG3671|consen   45 VQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELYQNFEYRQ----PRTFF-HTFEGDDC-  116 (569)
T ss_pred             HHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhhhhceecc----Cccce-eeeccccc-
Confidence            356666666679999999 999987664222  236665554  56999999999999864    33322 22221122 


Q ss_pred             ceeeEEEEEeCCHHHHHHhhc
Q 030641          129 LKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       129 ~k~~~~liRfks~e~A~eF~~  149 (174)
                          +.-+-|-+.++|++|..
T Consensus       117 ----~aGLnF~~E~EA~~F~k  133 (569)
T KOG3671|consen  117 ----QAGLNFASEEEAQKFRK  133 (569)
T ss_pred             ----eeeecccCHHHHHHHHH
Confidence                57788999999999995

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.61  E-value=7  Score=37.13  Aligned_cols=98  Identities=15%  Similarity=0.125  Sum_probs=67.9

Q ss_pred             eeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEeeec
Q 030641           45 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADY  124 (174)
Q Consensus        45 ~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~  124 (174)
                      +.++...+-||+|++-...+...- -.+++-.- ++|++-..+|-++--+++|-..|.++|.+.-... .-+++|+-++.
T Consensus       229 e~~~~~~~~l~~yd~~~e~Filq~-p~Vkv~i~-d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~-~~tFvwny~~~  305 (776)
T COG5167         229 ETLYSKNGVLSRYDTATERFILQK-PHVKVVIV-DDGKEVFWIRIETRDDVILFEEVRTETNPYFDQK-NTTFVWNYMED  305 (776)
T ss_pred             ceeeeecceEEeecchhheeeecC-CceEEEEE-ecCCeEEEEEEecccceeehheeccccCcceecc-cceeeeeeecc
Confidence            567999999999987432211100 00111111 4688888888887778899999999988765333 34788986652


Q ss_pred             CCCCceeeEEEEEeCCHHHHHHhhc
Q 030641          125 ADGELKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       125 ~dg~~k~~~~liRfks~e~A~eF~~  149 (174)
                        +  ...+|++||++-....+|.+
T Consensus       306 --n--~~~s~~LrF~d~~~~~qF~~  326 (776)
T COG5167         306 --N--VFHSFSLRFLDNLDFLQFLS  326 (776)
T ss_pred             --c--chheeeeeecchhHHHHHHH
Confidence              2  46799999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1rrp_B	134	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		5e-31
4gpt_B	140	Crystal Structure Of Kpt251 In Complex With Crm1-ra		3e-30
1k5d_B	201	Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl		3e-30
4hat_B	140	Crystal Structure Of Crm1 Inhibitor Leptomycin B In		6e-30
3m1i_B	191	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-29
4gmx_B	141	Crystal Structure Of Kpt185 In Complex With Crm1-Ra		3e-29
1xke_A	130	Solution Structure Of The Second Ran-Binding Domain		2e-23
2crf_A	150	Solution Structure Of The Ran_bp1 Domain Of Ran-Bin		3e-08
2y8f_A	138	Structure Of The Ran-Binding Domain From Human Ranb		2e-07
2y8g_A	138	Structure Of The Ran-Binding Domain From Human Ranb		9e-06
3oan_A	130	Crystal Structure Of The Ran Binding Domain From Th		2e-05
3n7c_A	130	Crystal Structure Of The Ran Binding Domain From Th		2e-05

>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 134

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 28  PIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLV 86
           P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+L+HK +GK+RL+
Sbjct: 4   PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLL 63
Query: 87  MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYF 146
           MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E   IRF + E    
Sbjct: 64  MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAAL 123
Query: 147 F 147
           F
Sbjct: 124 F 124

>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 140

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Query: 28  PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
           P+V LE+V V T EEDE+ +  ++AKL+RFDKD  +WKERG G  K LK+K T KVR++M
Sbjct: 6   PVVHLEKVDVKTAEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILM 65
Query: 88  RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVES 143
           R+ KTLKICANH++ P  +++ + G+D+S V+   AD A+GE +   F IRFGS E+
Sbjct: 66  RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKEN 122

>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 201

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/127 (50%), Positives = 86/127 (67%), Gaps = 3/127 (2%)
Query: 24  AQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTG 81
            Q  PIV L E  + T EEDE+ +  ++AKL+RF  + D  +WKERG G VKLLKHK  G
Sbjct: 25  PQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKG 84
Query: 82  KVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGS 140
            +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+  AD+AD   K EL  IRF +
Sbjct: 85  AIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLN 144
Query: 141 VESEYFF 147
            E+   F
Sbjct: 145 AENAQKF 151

>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1- Ran-ranbp1 Length = 140

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Query: 28  PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
           P+V LE+V V T EEDE+ +  ++AKL+RFDKD  +WKERG G  K LK+K T KVR++M
Sbjct: 6   PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILM 65
Query: 88  RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVES 143
           R+ KTLKICANH++ P  +++ + G+D+S V+   AD A+GE +   F IRFGS E+
Sbjct: 66  RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKEN 122

>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 191

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 92/141 (65%), Gaps = 3/141 (2%)
Query: 6   EGDHREEEVPHNED--EDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQ 63
           E D +EE     +D  E       P+V LE+V V T EEDE+ +  ++AKL+RFD D  +
Sbjct: 33  EEDTKEETKKEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKE 92
Query: 64  WKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AA 122
           WKERG G  K LK+K T KVR++MR+ KTLKICANH++ P  +++ + G+D+S V+   A
Sbjct: 93  WKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTA 152
Query: 123 DYADGELKDELFCIRFGSVES 143
           D A+GE +   F IRFGS E+
Sbjct: 153 DIAEGEAEAFTFAIRFGSKEN 173

>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With Crm1-Ran-Ranbp1 Length = 141

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 28  PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
           P+V LE+V V T EEDE+ +  ++AKL+RFD D  +WKERG G  K LK+K T KVR++M
Sbjct: 7   PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILM 66
Query: 88  RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVES 143
           R+ KTLKICANH++ P  +++ + G+D+S V+   AD A+GE +   F IRFGS E+
Sbjct: 67  RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKEN 123

>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From Human Ranbp2 Length = 130

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 75/104 (72%)
Query: 39  TGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98
           +GEEDE  +   + KL+RFD + +QWKERG G +K+LK++V GK+R++MR+ + LK+CAN
Sbjct: 2   SGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCAN 61
Query: 99  HLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           H +   M+++  +G+D++ +W A+D++DG+ K E    +F + E
Sbjct: 62  HWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPE 105

>pdb|2CRF|A Chain A, Solution Structure Of The Ran_bp1 Domain Of Ran-Binding Protein-3 Length = 150

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 32  LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
           LE+V V TGEE E  +L ++ KL+ FDK    W ERG G ++L     T     + RLVM
Sbjct: 14  LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 73
Query: 88  RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFF 147
           R   +L++  N  +   M + +   ++KS    A D  D  +K  +F I   S ++   +
Sbjct: 74  RTQGSLRLILNTKLWAQMQIDK--ASEKSIHITAMDTEDQGVK--VFLISASSKDTGQLY 129
Query: 148 SFI 150
           + +
Sbjct: 130 AAL 132

>pdb|2Y8F|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3 (Wild Type) Length = 138

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 34  EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQ 89
           +V V TGEE E  +L ++ KL+ FDK    W ERG G ++L     T     + RLVMR 
Sbjct: 4   KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 90  SKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSF 149
             +L++  N  +   M + +   ++KS    A D  D  +K  +F I   S ++   ++ 
Sbjct: 64  QGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLYAA 119
Query: 150 I 150
           +
Sbjct: 120 L 120

>pdb|2Y8G|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3 (E352a-R353v Double Mutant) Length = 138

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 34  EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQ 89
           +V V TGEE E  +L ++ KL+ FDK    W   G G ++L     T     + RLVMR 
Sbjct: 4   KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 90  SKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSF 149
             +L++  N  +   M + +   ++KS    A D  D  +K  +F I   S ++   ++ 
Sbjct: 64  QGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLYAA 119
Query: 150 I 150
           +
Sbjct: 120 L 120

>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 36  AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-VTGKVRLVMRQSKTLK 94
           ++T GEE+E+ +   KAKL  FD D   +  RG G +KLL+ K   GKVR++ R      
Sbjct: 2   SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLXRSEGXGH 61
Query: 95  ICANHLVLPMMSVQE-HAGNDKSCVWHAADYADGELKDELFCIR 137
           +  N  V+     Q   A N+    W      DG+L  E F I+
Sbjct: 62  VLLNTSVVKSFKYQPIDADNENLIKWPI--ITDGKL--ETFIIK 101

>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The Nuclear Complex Component Nup2 From Ashbya Gossypii Length = 130

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 36  AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-VTGKVRLVMRQSKTLK 94
           ++T GEE+E+ +   KAKL  FD D   +  RG G +KLL+ K   GKVR++ R      
Sbjct: 2   SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGXGH 61
Query: 95  ICANHLVLPMMSVQE-HAGNDKSCVWHAADYADGELKDELFCIR 137
           +  N  V+     Q   A N+    W      DG+L  E F I+
Sbjct: 62  VLLNTSVVKSFKYQPIDADNENLIKWPI--ITDGKL--ETFIIK 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1rrp_B	134	Nuclear pore complex protein NUP358; complex (smal	2e-42
1k5d_B	201	RAN-specific GTPase-activating protein; ranbp1, ra	7e-42
3m1i_B	191	RAN-specific GTPase-activating protein 1; heat rep	1e-41
1xke_A	130	RAN-binding protein 2; beta barrel, pleckstrin-hom	8e-40
2crf_A	150	RAN binding protein 3; RAN_BP1 domain, ranbp3, str	5e-39
2y8g_A	138	Ranbp3-B, RAN-binding protein 3; protein transport	1e-35
3n7c_A	130	ABR034WP; nuclear pore complex, NUP2, RAN-binding	5e-34
2ec1_A	125	Nucleoporin 50 kDa; ranbp domain, nuclear pore-ass	4e-33
1evh_A	112	WH1 domain, protein (MENA EVH1 domain); molecular	3e-10

>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Length = 134

 Score =  137 bits (347), Expect = 2e-42
 Identities = 60/119 (50%), Positives = 82/119 (68%), Gaps = 1/119 (0%)

Query: 25  QVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKV 83
              P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+L+HK +GK+
Sbjct: 1   HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKI 60

Query: 84  RLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           RL+MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E   IRF + E
Sbjct: 61  RLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPE 119

>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B* Length = 201

 Score =  138 bits (348), Expect = 7e-42
 Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 3/144 (2%)

Query: 2   ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFD--K 59
           A+    +  +    + ++ +   Q  PIV L E  + T EEDE+ +  ++AKL+RF    
Sbjct: 3   AAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASEN 62

Query: 60  DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
           D  +WKERG G VKLLKHK  G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW
Sbjct: 63  DLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVW 122

Query: 120 HA-ADYADGELKDELFCIRFGSVE 142
           +  AD+AD   K EL  IRF + E
Sbjct: 123 NTHADFADECPKPELLAIRFLNAE 146

>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} Length = 191

 Score =  137 bits (345), Expect = 1e-41
 Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 1/142 (0%)

Query: 2   ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
               +     ++   +  E       P+V LE+V V T EEDE+ +  ++AKL+RFD D 
Sbjct: 31  KDEEDTKEETKKEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADA 90

Query: 62  NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH- 120
            +WKERG G  K LK+K T KVR++MR+ KTLKICANH++ P  +++ + G+D+S V+  
Sbjct: 91  KEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYAC 150

Query: 121 AADYADGELKDELFCIRFGSVE 142
            AD A+GE +   F IRFGS E
Sbjct: 151 TADIAEGEAEAFTFAIRFGSKE 172

>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 130

 Score =  130 bits (329), Expect = 8e-40
 Identities = 44/104 (42%), Positives = 75/104 (72%)

Query: 39  TGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98
           +GEEDE  +   + KL+RFD + +QWKERG G +K+LK++V GK+R++MR+ + LK+CAN
Sbjct: 2   SGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCAN 61

Query: 99  HLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           H +   M+++  +G+D++ +W A+D++DG+ K E    +F + E
Sbjct: 62  HWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPE 105

>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3 Length = 150

 Score =  129 bits (325), Expect = 5e-39
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 8/134 (5%)

Query: 21  DTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-- 78
              +  A    LE+V V TGEE E  +L ++ KL+ FDK    W ERG G ++L      
Sbjct: 3   SGSSGTARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMAST 62

Query: 79  --VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCI 136
              T + RLVMR   +L++  N  +   M + +   ++KS    A D  D  +K  +F I
Sbjct: 63  DDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDK--ASEKSIHITAMDTEDQGVK--VFLI 118

Query: 137 RFGSVESEYFFSFI 150
              S ++   ++ +
Sbjct: 119 SASSKDTGQLYAAL 132

>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A Length = 138

 Score =  120 bits (302), Expect = 1e-35
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 33  EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK----VTGKVRLVMR 88
            +V V TGEE E  +L ++ KL+ FDK    W   G G ++L         T + RLVMR
Sbjct: 3   MKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMR 62

Query: 89  QSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFS 148
              +L++  N  +   M + +   ++KS    A D  D  +K  +F I   S ++   ++
Sbjct: 63  TQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLYA 118

Query: 149 FID 151
            + 
Sbjct: 119 ALH 121

>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Length = 130

 Score =  115 bits (290), Expect = 5e-34
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 35  VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-VTGKVRLVMRQSKTL 93
           +++T GEE+E+ +   KAKL  FD D   +  RG G +KLL+ K   GKVR++ R     
Sbjct: 1   MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMG 60

Query: 94  KICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
            +  N  V+     Q    ++++ +       DG+L  E F I+     
Sbjct: 61  HVLLNTSVVKSFKYQPIDADNENLIK-WPIITDGKL--ETFIIKVKQKA 106

>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 125

 Score =  113 bits (284), Expect = 4e-33
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 35  VAVTTGE-EDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL 93
            + ++GE ++EDA    K KL+      N++KE+G GT+  LK     K +L++R    L
Sbjct: 2   SSGSSGEVKEEDAFYSKKCKLFYKKD--NEFKEKGIGTLH-LKPTANQKTQLLVRADTNL 58

Query: 94  -KICANHLVLPMMSVQEHAGNDKSCVWHAADYADGE--LKDELFCIRFGSVE 142
             I  N L+ P M       N+   V       D +         IR  + E
Sbjct: 59  GNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSE 110

>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A Length = 112

 Score = 54.2 bits (130), Expect = 3e-10
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 14/103 (13%)

Query: 44  EDAILDLKAKLYRFDKDGNQW----KERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANH 99
           E +I   +A +  +D    +W       G   V +  H      R+V R+ +  ++  N 
Sbjct: 3   EQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINC 62

Query: 100 LVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
            +   +   +                      +++ + FGS E
Sbjct: 63  AIPKGLKYNQATQTFHQWRDA----------RQVYGLNFGSKE 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1rrpb_	134	b.55.1.3 (B:) Nuclear pore complex protein Nup358	2e-47
d1k5db_	146	b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human	1e-43
d2crfa1	137	b.55.1.3 (A:8-144) Ran binding protein 3 {Human (H	2e-40
d1xkea1	118	b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (H	3e-36
d1egxa_	115	b.55.1.4 (A:) Vasodilator-stimulated phosphoprotei	4e-20
d1evha_	111	b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId	4e-20

>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (376), Expect = 2e-47
 Identities = 60/117 (51%), Positives = 82/117 (70%), Gaps = 1/117 (0%)

Query: 27  APIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRL 85
            P+V L +++ V TGEEDE+     +AKL+RFD +  +WKERG G VK+L+HK +GK+RL
Sbjct: 3   EPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRL 62

Query: 86  VMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           +MR+ + LKICANH + P M +  +AG+D+S VWHA DYAD   K E   IRF + E
Sbjct: 63  LMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPE 119

>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 1e-43
 Identities = 64/129 (49%), Positives = 84/129 (65%), Gaps = 7/129 (5%)

Query: 17  NEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFD--KDGNQWKERGAGTVKL 74
           N D        PIV L E  + T EEDE+ +  ++AKL+RF    D  +WKERG G VKL
Sbjct: 1   NHDPQ----FEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKL 56

Query: 75  LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDEL 133
           LKHK  G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+  AD+AD   K EL
Sbjct: 57  LKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPEL 116

Query: 134 FCIRFGSVE 142
             IRF + E
Sbjct: 117 LAIRFLNAE 125

>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran binding protein 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 2e-40
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 8/125 (6%)

Query: 27  APIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK----VTGK 82
           A    LE+V V TGEE E  +L ++ KL+ FDK    W ERG G ++L         T +
Sbjct: 2   ARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQ 61

Query: 83  VRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
            RLVMR   +L++  N  +   M +     ++KS    A D  D  +  ++F I   S +
Sbjct: 62  SRLVMRTQGSLRLILNTKLWAQMQI--DKASEKSIHITAMDTEDQGV--KVFLISASSKD 117

Query: 143 SEYFF 147
           +   +
Sbjct: 118 TGQLY 122

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 3e-36
 Identities = 40/99 (40%), Positives = 70/99 (70%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP 103
           E  +   + KL+RFD + +QWKERG G +K+LK++V GK+R++MR+ + LK+CANH +  
Sbjct: 1   EKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITT 60

Query: 104 MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
            M+++  +G+D++ +W A+D++DG+ K E    +F + E
Sbjct: 61  TMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPE 99

>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Vasodilator-stimulated phosphoprotein (VASP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (194), Expect = 4e-20
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERGAGT-----VKLLKHKVTGKVRLVMRQSKT-LKICA 97
           E  I   +A +  +D    +W   G G      V++  +      R+V R+ +   ++  
Sbjct: 3   ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVI 62

Query: 98  NHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
           N  ++                    ++       +++ + FGS E
Sbjct: 63  NCAIVR----------GVKYNQATPNFHQWRDARQVWGLNFGSKE 97

>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Enabled
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.5 bits (193), Expect = 4e-20
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 44  EDAILDLKAKLYRFDKDGNQWKERG----AGTVKLLKHKVTGKVRLVMRQSKTLKICANH 99
           E +I   +A +  +D    +W   G       V +  H      R+V R+ +  ++  N 
Sbjct: 2   EQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINC 61

Query: 100 LVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
            +   +   +         W            +++ + FGS E
Sbjct: 62  AIPKGLKYNQA--TQTFHQWRD--------ARQVYGLNFGSKE 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1k5db_	146	Ran-binding protein 1, Ranbp1 {Human (Homo sapiens	100.0
d1rrpb_	134	Nuclear pore complex protein Nup358 {Human (Homo s	100.0
d2crfa1	137	Ran binding protein 3 {Human (Homo sapiens) [TaxId	100.0
d1xkea1	118	Ran-binding protein 2 {Human (Homo sapiens) [TaxId	100.0
d1evha_	111	Enabled {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1egxa_	115	Vasodilator-stimulated phosphoprotein (VASP) {Huma	99.92
d1mkea1	114	Actin regulatory protein WASP {Rat (Rattus norvegi	99.06
d1i2ha_	145	Homer {Rat (Rattus norvegicus) [TaxId: 10116]}	98.8
d1xoda1	114	Sprouty-related, EVH1 domain-containing protein 1,	98.17

>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 1, Ranbp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=254.64  Aligned_cols=136  Identities=47%  Similarity=0.789  Sum_probs=124.9

Q ss_pred             CCCCCCCEEEECEEEEEECCCCCCEEEEEEEEEEEEECCCC--CCCEEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEE
Q ss_conf             88995221365001355416766115999632699870589--9962543499999872899939999982794006852
Q 030641           21 DTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDG--NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN   98 (174)
Q Consensus        21 ~~~~~f~p~v~L~~v~~~tGEE~E~~lf~~raKLy~~~~e~--~~WkerG~G~LkI~k~~~t~~~RIvmR~d~~~kvlLN   98 (174)
                      +.+++|+|+++|++++++||||+|+++|++|||||+|+.++  ++|++||+|+|||+++++++++|||||++++++|+||
T Consensus         1 ~~d~~~~pvv~l~~~ev~tgEE~E~~lf~~r~Kl~~f~~~~~~~~WkerGvG~lkilk~k~t~~~RllmR~d~~~kv~lN   80 (146)
T d1k5db_           1 NHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICAN   80 (146)
T ss_dssp             CCCCCCCCSCCCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSSSCCEEEEEEETTTCCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCEEEE
T ss_conf             99887456674897265367647469999866899982657788751203899999783889818999997477857988


Q ss_pred             EEECCCCEEEECCCCCEEEEEEE-EECCCCCCEEEEEEEEECCHHHHHHHHCH--HHHCCC
Q ss_conf             23328844554179970599983-00599981136999990998888774605--410102
Q 030641           99 HLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVESEYFFSFI--DSSKLN  156 (174)
Q Consensus        99 ~~I~~~m~~~~~~~~~k~~~~~~-~d~~dg~~k~~~~lirfks~e~A~eF~~~--~~~k~n  156 (174)
                      |+|+++|++++..++.++++|++ .|++++++++++|++||++++.|++|...  ++++.|
T Consensus        81 ~~i~~~m~~~~~~~~~~~~~~~~~~d~~~~~~k~~~~~irfk~~e~a~~f~~~~~e~k~~~  141 (146)
T d1k5db_          81 HYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEI  141 (146)
T ss_dssp             EECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCEECCCCCCCEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             5715783350367875368997057776678850899999799999999999999999987

>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Nuclear pore complex protein Nup358
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-43  Score=249.14  Aligned_cols=126  Identities=48%  Similarity=0.853  Sum_probs=120.8

Q ss_pred             CCCEEEECE-EEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEECC
Q ss_conf             522136500-1355416766115999632699870589996254349999987289993999998279400685223328
Q 030641           25 QVAPIVKLE-EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP  103 (174)
Q Consensus        25 ~f~p~v~L~-~v~~~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~t~~~RIvmR~d~~~kvlLN~~I~~  103 (174)
                      +|+||++|| +|++.||||+|+++|+.|||||+|++++++|++||+|+|||+++++++++|||||++++++|+||+.|++
T Consensus         1 ~f~p~~~l~~~v~~~tgEE~E~~if~~r~KL~~~~~~~~~WkerGvG~lkil~~~~t~~~RlvmR~d~~~kv~lN~~i~~   80 (134)
T d1rrpb_           1 HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISP   80 (134)
T ss_dssp             CCCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCS
T ss_pred             CCCCCCCCCCCCCEECCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCCEEEEEEECCCCCEEEEEEECC
T ss_conf             95685328872340167537279999863999983899834314389999988088992899999747783889989778


Q ss_pred             CCEEEECCCCCEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHCH
Q ss_conf             84455417997059998300599981136999990998888774605
Q 030641          104 MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFI  150 (174)
Q Consensus       104 ~m~~~~~~~~~k~~~~~~~d~~dg~~k~~~~lirfks~e~A~eF~~~  150 (174)
                      +|+++++.++.++++|++.|++++..++.+|++||++++.|++|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~d~~~~~~k~~~~~lrfk~~e~a~~f~~~  127 (134)
T d1rrpb_          81 DMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCK  127 (134)
T ss_dssp             SCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf             83780168994489997001688888679999998999999999999

>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran binding protein 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=212.09  Aligned_cols=118  Identities=32%  Similarity=0.496  Sum_probs=104.7

Q ss_pred             EECEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECC----CCEEEEEEEECCCCEEEEEEEECCCC
Q ss_conf             65001355416766115999632699870589996254349999987289----99399999827940068522332884
Q 030641           30 VKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKV----TGKVRLVMRQSKTLKICANHLVLPMM  105 (174)
Q Consensus        30 v~L~~v~~~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~----t~~~RIvmR~d~~~kvlLN~~I~~~m  105 (174)
                      +.|++|+++||||+|++||++|||||+|++++++|++||+|++||++++.    ++++|||||++++++|+||++|+++|
T Consensus         5 ~~l~ev~v~TGEE~E~~l~~~r~KL~~fd~~~~~WkerG~G~lkl~~~k~~~~~t~k~RlvmR~~~~~kv~lN~~i~~~m   84 (137)
T d2crfa1           5 CLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQM   84 (137)
T ss_dssp             SCSSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTC
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECEECCCC
T ss_conf             56764264078648389999887999991788867526779999988804678874599999988988099957877998


Q ss_pred             EEEECCCCCEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHCHH
Q ss_conf             4554179970599983005999811369999909988887746054
Q 030641          106 SVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFID  151 (174)
Q Consensus       106 ~~~~~~~~~k~~~~~~~d~~dg~~k~~~~lirfks~e~A~eF~~~~  151 (174)
                      ++++.  ++++++|++.|++++  ++.+|+++|++++.++.|..+.
T Consensus        85 ~~~~~--~~k~v~~~~~d~~~~--~~~~~li~~~~~~~~~l~~~i~  126 (137)
T d2crfa1          85 QIDKA--SEKSIHITAMDTEDQ--GVKVFLISASSKDTGQLYAALH  126 (137)
T ss_dssp             CEECC--SSSEEEEEEEBSSSC--CEEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCCC--CCCEEEEEEECCCCC--CEEEEEEEECCHHHHHHHHHHH
T ss_conf             21138--987799984647999--2489999989999999999999

>d1xkea1 b.55.1.3 (A:7-124) Ran-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Ran-binding domain
domain: Ran-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-36  Score=207.56  Aligned_cols=113  Identities=37%  Similarity=0.725  Sum_probs=105.5

Q ss_pred             CEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEE
Q ss_conf             11599963269987058999625434999998728999399999827940068522332884455417997059998300
Q 030641           44 EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAAD  123 (174)
Q Consensus        44 E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~t~~~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d  123 (174)
                      |+++|+.|||||+|+++.++|++||+|+|||+++++++++|||||+|++++++||++|+|+|+++++.++.++++|++.|
T Consensus         1 E~~lf~~raKLy~~~~~~~~WkerG~G~lkilk~~~~~~~RlvmR~d~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d   80 (118)
T d1xkea1           1 EKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASD   80 (118)
T ss_dssp             EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCEEEEEEE
T ss_pred             CCCEEEEEEEEEEEECCCCCHHHHCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCC
T ss_conf             96178998999999389999057016689999957899299999998988599996976788304045885589996556


Q ss_pred             CCCCCCEEEEEEEEECCHHHHHHHHCH--HHHCCC
Q ss_conf             599981136999990998888774605--410102
Q 030641          124 YADGELKDELFCIRFGSVESEYFFSFI--DSSKLN  156 (174)
Q Consensus       124 ~~dg~~k~~~~lirfks~e~A~eF~~~--~~~k~n  156 (174)
                      ++++++++++|++||++++.|++|...  ++++..
T Consensus        81 ~~~~~~~~~~~~lrfk~~e~a~~f~~~~~eak~~l  115 (118)
T d1xkea1          81 FSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL  115 (118)
T ss_dssp             CSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             67898866999999899999999999999999988

>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Enabled
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.4e-25  Score=152.09  Aligned_cols=98  Identities=19%  Similarity=0.391  Sum_probs=86.7

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCEEEEE----EEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCEEEE
Q ss_conf             611599963269987058999625434----9999987289993999998279400685223328844554179970599
Q 030641           43 DEDAILDLKAKLYRFDKDGNQWKERGA----GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV  118 (174)
Q Consensus        43 ~E~~lf~~raKLy~~~~e~~~WkerG~----G~LkI~k~~~t~~~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~  118 (174)
                      +|++||++|||||+|++++++|++||.    |.++|+++++++++|||||++++++||+||.|+++|++.++  +++...
T Consensus         1 nE~~~~~~rAkl~~~d~~~~~Wk~rG~g~~~~~v~il~~~~~~~~Rivmrr~~~~kv~~N~~i~~~~~y~~~--~~~~~~   78 (111)
T d1evha_           1 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQA--TQTFHQ   78 (111)
T ss_dssp             CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEEEEEEETTTCCEEEEEEECTTCCCBCC--SSSEEE
T ss_pred             CCCEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCCEECC--CCCEEE
T ss_conf             965047998799999689995400678721689999996899889999998468707998751575334238--982689


Q ss_pred             EEEEECCCCCCEEEEEEEEECCHHHHHHHHCH
Q ss_conf             98300599981136999990998888774605
Q 030641          119 WHAADYADGELKDELFCIRFGSVESEYFFSFI  150 (174)
Q Consensus       119 ~~~~d~~dg~~k~~~~lirfks~e~A~eF~~~  150 (174)
                      |.+.        ...|.+||+++++|+.|+..
T Consensus        79 w~~~--------~~~fglrF~~~e~A~~F~~~  102 (111)
T d1evha_          79 WRDA--------RQVYGLNFGSKEDANVFASA  102 (111)
T ss_dssp             EECS--------SCEEEEEESSHHHHHHHHHH
T ss_pred             EECC--------CEEEEEECCCHHHHHHHHHH
T ss_conf             9648--------66999983999999999999

>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Vasodilator-stimulated phosphoprotein (VASP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-25  Score=152.50  Aligned_cols=98  Identities=20%  Similarity=0.397  Sum_probs=86.5

Q ss_pred             CCEEEEEEEEEEEEECCCCCCCEEEEEE-----EEEEEEECCCCEEEEEEEECCC-CEEEEEEEECCCCEEEECCCCCEE
Q ss_conf             6115999632699870589996254349-----9999872899939999982794-006852233288445541799705
Q 030641           43 DEDAILDLKAKLYRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPMMSVQEHAGNDKS  116 (174)
Q Consensus        43 ~E~~lf~~raKLy~~~~e~~~WkerG~G-----~LkI~k~~~t~~~RIvmR~d~~-~kvlLN~~I~~~m~~~~~~~~~k~  116 (174)
                      +|++||++|||||+||+++++|++||+|     .++|++++.++++|||||++++ ++|||||.|+++|+++++.++  .
T Consensus         2 nE~~l~~~rAkl~~~d~~tk~WkerG~G~~~~~~vkil~~~~~~~~Riv~rr~~~~~kv~lN~~I~~~~~~~~~~~~--f   79 (115)
T d1egxa_           2 SETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPN--F   79 (115)
T ss_dssp             CSCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTT--E
T ss_pred             CCCEEEEEEEEEEEEECCCCCCEECCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCCCEEECCCC--C
T ss_conf             86325789879999959998422679873788899997448884478999997579889999298788615776896--2


Q ss_pred             EEEEEEECCCCCCEEEEEEEEECCHHHHHHHHCH
Q ss_conf             9998300599981136999990998888774605
Q 030641          117 CVWHAADYADGELKDELFCIRFGSVESEYFFSFI  150 (174)
Q Consensus       117 ~~~~~~d~~dg~~k~~~~lirfks~e~A~eF~~~  150 (174)
                      -.|.     ++   .+.|.+||+++++|+.|+..
T Consensus        80 ~~w~-----~~---~~~f~lrF~~~e~A~~F~~~  105 (115)
T d1egxa_          80 HQWR-----DA---RQVWGLNFGSKEDAAQFAAG  105 (115)
T ss_dssp             EEEE-----SS---SCEEEEEESSHHHHHHHHHH
T ss_pred             EEEC-----CC---CEEEEEEECCHHHHHHHHHH
T ss_conf             0004-----56---51899980999999999999

>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Actin regulatory protein WASP
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=2.4e-09  Score=66.69  Aligned_cols=99  Identities=14%  Similarity=0.134  Sum_probs=81.6

Q ss_pred             EEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEEC
Q ss_conf             15999632699870589996254349999987289993999998279400685223328844554179970599983005
Q 030641           45 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADY  124 (174)
Q Consensus        45 ~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~t~~~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~  124 (174)
                      .++..+.++||..+++ +.|..+|.|.+-+.++.....++|+++..+.+++++++.|+++|.+.+.  .+.-.+|.  + 
T Consensus        11 ~~latavv~lY~~~~~-~~W~~~~tG~v~~v~d~~~~~~~l~v~d~~~~~vi~e~eI~~~~~Y~k~--~~~Fh~~~--~-   84 (114)
T d1mkea1          11 VTMSSAVVQLYAADRN-CMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSP--RGYFHTFA--G-   84 (114)
T ss_dssp             EEEEEEEEEEEEEETT-TEEEEEEEEEEEEEEETTTTEEEEEEECSSSCSEEEEEECCSSCCCBCS--SSSEEEEE--C-
T ss_pred             CEEEEEEEEEEEECCC-CEEEECCCEEEEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCEEECC--CCEEEEEE--C-
T ss_conf             1325679999997799-7478889267999997799769999998789969999982589678514--78489998--3-


Q ss_pred             CCCCCEEEEEEEEECCHHHHHHHHCHHHHC
Q ss_conf             999811369999909988887746054101
Q 030641          125 ADGELKDELFCIRFGSVESEYFFSFIDSSK  154 (174)
Q Consensus       125 ~dg~~k~~~~lirfks~e~A~eF~~~~~~k  154 (174)
                       +.    ..+.+.|.++++|..|...-.++
T Consensus        85 -~~----~~~GL~F~~~~eA~~f~~~i~~~  109 (114)
T d1mkea1          85 -DT----CQVALNFANEEEAKKFRKAVTDL  109 (114)
T ss_dssp             -SS----SEEEEEESSHHHHHHHHHHHHHH
T ss_pred             -CC----CEEEEEECCHHHHHHHHHHHHHH
T ss_conf             -79----44999509999999999999999

>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Homer
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=8.4e-08  Score=58.44  Aligned_cols=97  Identities=19%  Similarity=0.343  Sum_probs=77.3

Q ss_pred             CCEEEEEEEEEEEEECCCCC-CCEEEEE--EEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCEEEEE
Q ss_conf             61159996326998705899-9625434--99999872899939999982794006852233288445541799705999
Q 030641           43 DEDAILDLKAKLYRFDKDGN-QWKERGA--GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW  119 (174)
Q Consensus        43 ~E~~lf~~raKLy~~~~e~~-~WkerG~--G~LkI~k~~~t~~~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~  119 (174)
                      .|..||++||-.|.+|+.++ .|.--|.  -.++|..+.....+|||=+.|+  +|+||..|.++|+|.+.  +.+.-.|
T Consensus         4 ~E~~i~~~rA~V~~~d~~tkk~W~P~s~~~s~V~i~~~~~~~~yRIvg~~d~--~vvin~~i~~~l~y~ka--s~~FhqW   79 (145)
T d1i2ha_           4 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGS--KAIINSTITPNMTFTKT--SQKFGQW   79 (145)
T ss_dssp             SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEEEEEEETT--EEEEEEECCTTCCEEEE--ETTEEEE
T ss_pred             CCCCEEEEEEEEEEECCCCCCEEEECCCCCEEEEEEECCCCCEEEEEEECCC--EEEEEEECCCCCEEEEC--CCCEEEE
T ss_conf             5653147888999999988745487788956799997489856888984598--58998632688514422--5640271


Q ss_pred             EEEECCCCCCEEEEEEEEECCHHHHHHHHC
Q ss_conf             830059998113699999099888877460
Q 030641          120 HAADYADGELKDELFCIRFGSVESEYFFSF  149 (174)
Q Consensus       120 ~~~d~~dg~~k~~~~lirfks~e~A~eF~~  149 (174)
                      .  |   .. .-+.|=+-|.++++|..|..
T Consensus        80 r--d---~r-~~~V~GL~F~s~~da~~F~~  103 (145)
T d1i2ha_          80 A--D---SR-ANTVYGLGFSSEHHLSKFAE  103 (145)
T ss_dssp             E--E---TT-TTEEEEEEESSHHHHHHHHH
T ss_pred             E--E---CC-CCCEEECCCCCHHHHHHHHH
T ss_conf             1--0---55-55156115599899999999

>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Sprouty-related, EVH1 domain-containing protein 1, Spred-1
species: Western clawed frog (Xenopus tropicalis) [TaxId: 8364]

Probab=98.17  E-value=4.2e-06  Score=49.38  Aligned_cols=94  Identities=14%  Similarity=0.184  Sum_probs=71.0

Q ss_pred             EEEEEEEEEEECCCCCCCEEEEEEE---EEEEE-----ECCCCEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCEEEE
Q ss_conf             9996326998705899962543499---99987-----289993999998279400685223328844554179970599
Q 030641           47 ILDLKAKLYRFDKDGNQWKERGAGT---VKLLK-----HKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV  118 (174)
Q Consensus        47 lf~~raKLy~~~~e~~~WkerG~G~---LkI~k-----~~~t~~~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~  118 (174)
                      +-++||..|.+|..+++|...|.|-   ..|-+     +.....|||+-|+-+-..+++|..|+++|++....  +..-.
T Consensus         2 ~~~~RA~Vm~~dd~tk~W~P~gggglS~v~v~~~~~~~~~~~~~Y~I~g~~l~d~~vvi~~~l~~~~~Y~~~~--~~FH~   79 (114)
T d1xoda1           2 YARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVT--PTFHH   79 (114)
T ss_dssp             CEEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEE--TTEEE
T ss_pred             CCEEEEEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEECCC--CCEEE
T ss_conf             2259999999828888457568887213889998547889983599999982588089999812797895378--80699


Q ss_pred             EEEEECCCCCCEEEEEEEEECCHHHHHHHHCH
Q ss_conf             98300599981136999990998888774605
Q 030641          119 WHAADYADGELKDELFCIRFGSVESEYFFSFI  150 (174)
Q Consensus       119 ~~~~d~~dg~~k~~~~lirfks~e~A~eF~~~  150 (174)
                      |.  +   +.   ..|-+-|.++++|..|...
T Consensus        80 w~--~---~~---~~~GL~F~se~eA~~F~~~  103 (114)
T d1xoda1          80 WR--I---GD---KKFGLTFQSPADARAFDRG  103 (114)
T ss_dssp             EE--E---TT---EEEEEEESSHHHHHHHHHH
T ss_pred             EE--E---CC---EEEEEECCCHHHHHHHHHH
T ss_conf             97--0---88---7999851988999999999