Citrus Sinensis ID: 030677

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKACHKLQVLCPSFGLVFYLIGMF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHEEEEccc
Coil and Loop (DISEMBL)
mrdglmtssvhdmsdnsdadeqrkhpesqlqsstpamgmshpsittpnvqyathqvgaghamapaaypypdpyyrsifapydaqpyppqpyggqpmvHLQLMGIqqagvplptdaveepvfvnAKQYHGILRRRQSRAKAESENKVLKSRKACHKLQVLCPSFGLVFYLIGMF
Flexible Loop (DISEMBL)
mrdglmtssvhdmsdnsdadeqRKHPesqlqsstpamGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKqyhgilrrrqsrakaESENKVLKsrkachklqvlcpSFGLVFYLIGMF
Low Complexity Region (SEG)
MRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHamapaaypypdpyyRSIFapydaqpyppqpyggqpMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKACHKLQVLCPSFGLVFYLIGMF
Disordered region (IsUnstruct)
************************************************VQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGIL******************RKACHKLQVLCPSFGLVFYLIG**
Disordered Region (DISOPRED)
***********************************************************************************************************************VFVNAKQYHGILRRRQ*****************CHKLQVLCPSFGLVFYLIGMF
Disordered Region (DISEMBL)
***************************************SHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHG******************KSRKACHKLQVLCPSFGLVFYLIGMF
Disordered Region (DISPRO)
************************************************VQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKACHKLQVLCPSFGLVFYLIGMF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRDGLMTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKACHKLQVLCPSFGLVFYLIGMF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q84JP1	190	Nuclear transcription fac	yes	no	0.768	0.7	0.609	3e-39
Q8VY64	198	Nuclear transcription fac	no	no	0.757	0.661	0.554	3e-34
Q945M9	303	Nuclear transcription fac	no	no	0.520	0.297	0.457	6e-16
Q9LXV5	272	Nuclear transcription fac	no	no	0.479	0.305	0.451	3e-14
Q93ZH2	340	Nuclear transcription fac	no	no	0.520	0.264	0.405	1e-12
Q9SYH4	308	Nuclear transcription fac	no	no	0.312	0.175	0.6	3e-12
Q9LNP6	328	Nuclear transcription fac	no	no	0.450	0.237	0.423	2e-11
Q9LVJ7	308	Nuclear transcription fac	no	no	0.358	0.201	0.531	5e-10
P23708	346	Nuclear transcription fac	yes	no	0.248	0.124	0.577	1e-07
P23511	347	Nuclear transcription fac	yes	no	0.248	0.123	0.577	1e-07

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 108/146 (73%), Gaps = 13/146 (8%)

Query: 6   MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 65
           MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T  V Y+    G  ++MAP 
Sbjct: 1   MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVTSLV-YS--DPGTTNSMAPG 56

Query: 66  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 125
            YPYPDPYYRSIFAP      PPQPY G   VHLQLMG+QQ GVPLP+DAVEEPVFVNAK
Sbjct: 57  QYPYPDPYYRSIFAP------PPQPYTG---VHLQLMGVQQQGVPLPSDAVEEPVFVNAK 107

Query: 126 QYHGILRRRQSRAKAESENKVLKSRK 151
           QYHGILRRRQSRA+ ES+NKV+KSRK
Sbjct: 108 QYHGILRRRQSRARLESQNKVIKSRK 133

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  144 bits (363), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 100/146 (68%), Gaps = 15/146 (10%)

Query: 6   MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 65
           MTSSVH++SDN+++  +++ P+SQ +   P+ G S  SI T +V            MA  
Sbjct: 1   MTSSVHELSDNNESHAKKERPDSQTRPQVPS-GRSSESIDTNSV--------YSEPMAHG 51

Query: 66  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 125
            YPYPDPYYRS+FA    Q Y P PY   P V LQLMG+QQ GVPL  DAVEEPVFVNAK
Sbjct: 52  LYPYPDPYYRSVFA---QQAYLPHPY---PGVQLQLMGMQQPGVPLQCDAVEEPVFVNAK 105

Query: 126 QYHGILRRRQSRAKAESENKVLKSRK 151
           QYHGILRRRQSRAK E+ N+ +K++K
Sbjct: 106 QYHGILRRRQSRAKLEARNRAIKAKK 131

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 58/105 (55%), Gaps = 15/105 (14%)

Query: 47  PNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQ 106
           P+ Q   H VG       ++ PY DPYY  +   Y   P    PYGG P   +       
Sbjct: 110 PHPQLVGHTVGWA-----SSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRM------- 157

Query: 107 AGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
              PLP +  +EPVFVNAKQY  ILRRRQ+RAKAE E K++KSRK
Sbjct: 158 ---PLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRK 199

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 10/93 (10%)

Query: 59  GHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEE 118
           GH +A    PY DPYY  +   Y  Q    +PY          +G+ +    LP D  +E
Sbjct: 123 GHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPY----------LGMPRERTALPLDMAQE 172

Query: 119 PVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           PV+VNAKQY GILRRR++RAKAE E KV++ RK
Sbjct: 173 PVYVNAKQYEGILRRRKARAKAELERKVIRDRK 205

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 16/106 (15%)

Query: 47  PNVQYATHQVGAGHAMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQ 106
           PN+ +A        A A  ++ Y DP+Y  + A      Y PQ     P  + Q++ +  
Sbjct: 122 PNIHFAP-------AQANFSFHYADPHYGGLLAA----TYLPQA----PTCNPQMVSMIP 166

Query: 107 AGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
             VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RK
Sbjct: 167 GRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARK 212

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%), Gaps = 1/55 (1%)

Query: 98  HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RK
Sbjct: 157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRK 211

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 14/92 (15%)

Query: 61  AMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVE-EP 119
           + A  ++ Y DP++  +        Y PQ     P         Q   VPLP D +E EP
Sbjct: 127 SKANFSFHYADPHFGGLMPA----AYLPQATIWNP---------QMTRVPLPFDLIENEP 173

Query: 120 VFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           VFVNAKQ+H I+RRRQ RAK E++NK++K+RK
Sbjct: 174 VFVNAKQFHAIMRRRQQRAKLEAQNKLIKARK 205

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 90  PYGGQPMV-HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVL 147
           PY  Q  V H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++
Sbjct: 141 PYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLI 200

Query: 148 KSRK 151
           K RK
Sbjct: 201 KVRK 204

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P23708|NFYA_MOUSE Nuclear transcription factor Y subunit alpha OS=Mus musculus GN=Nfya PE=1 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 35/45 (77%), Gaps = 2/45 (4%)

Query: 109 VPLPTDAV--EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           +PLP   +  EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+
Sbjct: 251 IPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERR 295

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters, for example in type 1 collagen, albumin and beta-actin genes.

Mus musculus (taxid: 10090)

>sp|P23511|NFYA_HUMAN Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 35/45 (77%), Gaps = 2/45 (4%)

Query: 109 VPLPTDAV--EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           +PLP   +  EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+
Sbjct: 252 IPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERR 296

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters, for example in type 1 collagen, albumin and beta-actin genes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
224113655	208	predicted protein [Populus trichocarpa]	0.843	0.701	0.828	3e-65
225444037	208	PREDICTED: nuclear transcription factor	0.843	0.701	0.823	2e-62
224056517	205	predicted protein [Populus trichocarpa]	0.843	0.712	0.828	3e-57
255564393	213	Nuclear transcription factor Y subunit A	0.843	0.685	0.781	2e-56
148595730	207	YA6 [Antirrhinum majus]	0.838	0.700	0.748	1e-55
449433674	202	PREDICTED: nuclear transcription factor	0.826	0.707	0.808	1e-52
255638418	206	unknown [Glycine max]	0.815	0.684	0.707	5e-50
356512572	206	PREDICTED: nuclear transcription factor	0.815	0.684	0.707	9e-50
449490734	201	PREDICTED: nuclear transcription factor	0.815	0.701	0.784	3e-49
356555881	205	PREDICTED: nuclear transcription factor	0.826	0.697	0.741	4e-45

>gi|224113655|ref|XP_002332527.1| predicted protein [Populus trichocarpa] gi|222832639|gb|EEE71116.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/146 (82%), Positives = 133/146 (91%)

Query: 6   MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 65
           MTSSVHD+SDNS+A EQ+KH E Q+Q+S+PA  ++HP I+ PN QYAT Q+GAGHAMAPA
Sbjct: 1   MTSSVHDLSDNSEAGEQQKHSEPQVQTSSPANALAHPGISPPNFQYATPQLGAGHAMAPA 60

Query: 66  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 125
           AYPYPDPYYRSIFAP DAQPY PQPYG QPMVHLQLMGIQQAGVPLP+DAVEEPVFVNAK
Sbjct: 61  AYPYPDPYYRSIFAPCDAQPYAPQPYGAQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAK 120

Query: 126 QYHGILRRRQSRAKAESENKVLKSRK 151
           QYHGILRRRQSRAKAESENK +KSRK
Sbjct: 121 QYHGILRRRQSRAKAESENKAIKSRK 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444037|ref|XP_002282043.1| PREDICTED: nuclear transcription factor Y subunit A-7 isoform 1 [Vitis vinifera] gi|297740816|emb|CBI30998.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/147 (82%), Positives = 130/147 (88%), Gaps = 1/147 (0%)

Query: 6   MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATH-QVGAGHAMAP 64
           MTSSVHD+SDNS+ADE +KH E Q+QSS+PA G SHP     N+ YAT  Q+GAGHAMA 
Sbjct: 1   MTSSVHDLSDNSEADEPQKHSELQVQSSSPAAGASHPGSAAANIPYATPPQLGAGHAMAQ 60

Query: 65  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 124
           AAYPYPDPYYRSIFAPYDAQPYP Q Y GQPMVHLQLMGIQQAGVPLP+DAVEEPVFVNA
Sbjct: 61  AAYPYPDPYYRSIFAPYDAQPYPAQHYSGQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNA 120

Query: 125 KQYHGILRRRQSRAKAESENKVLKSRK 151
           KQYHGILRRRQSRAKAESENKV+KSRK
Sbjct: 121 KQYHGILRRRQSRAKAESENKVVKSRK 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056517|ref|XP_002298891.1| predicted protein [Populus trichocarpa] gi|222846149|gb|EEE83696.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/146 (82%), Positives = 133/146 (91%)

Query: 6   MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 65
           MTSS+HD+SDNS+ADEQ+   E Q+QSS+PAM  +HP  +TPNVQYAT Q+GAGHAMAPA
Sbjct: 14  MTSSLHDLSDNSEADEQQNESEPQIQSSSPAMAQAHPGFSTPNVQYATPQLGAGHAMAPA 73

Query: 66  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 125
            YPYPDPYYRSIFAPYD QPYPPQPYG QPMVHLQLMGIQQAGVPLP+DAVEEPVFVNAK
Sbjct: 74  TYPYPDPYYRSIFAPYDPQPYPPQPYGAQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAK 133

Query: 126 QYHGILRRRQSRAKAESENKVLKSRK 151
           QYHGILRRRQSRAKAESE+K +KSRK
Sbjct: 134 QYHGILRRRQSRAKAESESKAIKSRK 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564393|ref|XP_002523193.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis] gi|223537600|gb|EEF39224.1| Nuclear transcription factor Y subunit A-4, putative [Ricinus communis]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/151 (78%), Positives = 125/151 (82%), Gaps = 5/151 (3%)

Query: 6   MTSSVHDMSDNSDADEQR-KHPESQLQSSTPAMGMSHPSITTPNVQYATHQ----VGAGH 60
           MTSSVHD SDNSDA+EQ+ K  E+Q QSS PA  M HP I+TPN  Y T +      A  
Sbjct: 1   MTSSVHDHSDNSDANEQQQKLSETQNQSSPPATAMVHPGISTPNAHYTTSRQLGSGHAMA 60

Query: 61  AMAPAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPV 120
           A   AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLP+D VEEPV
Sbjct: 61  AGGAAAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDTVEEPV 120

Query: 121 FVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           FVNAKQYHGILRRRQSRAKAESENKV+KSRK
Sbjct: 121 FVNAKQYHGILRRRQSRAKAESENKVIKSRK 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148595730|emb|CAM12544.1| YA6 [Antirrhinum majus]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 126/147 (85%), Gaps = 2/147 (1%)

Query: 6   MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATH-QVGAGHAMAP 64
           MTSS++ +SDNS+ADEQ+KH +SQLQS + A GM+HP I +  +QYA   Q+G  + M P
Sbjct: 1   MTSSINSLSDNSEADEQQKHTDSQLQSPSSANGMAHPGIASQTMQYAAPPQLGV-NGMVP 59

Query: 65  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 124
           AAYPY DPYYRSIFAPY+AQPYP QPY  QPMVHLQLMGIQQAGVPLP+DAVEEPVFVNA
Sbjct: 60  AAYPYADPYYRSIFAPYEAQPYPAQPYPAQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNA 119

Query: 125 KQYHGILRRRQSRAKAESENKVLKSRK 151
           KQYHGI+RRRQSRAKAESENK+ KSRK
Sbjct: 120 KQYHGIMRRRQSRAKAESENKLAKSRK 146

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433674|ref|XP_004134622.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Cucumis sativus] gi|449433676|ref|XP_004134623.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Cucumis sativus]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 126/146 (86%), Gaps = 3/146 (2%)

Query: 6   MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPA 65
           MTSSVHD SDN +ADEQRK+ ESQ  SS+   G++    +TPN   A+ QVGAGH+M P 
Sbjct: 1   MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQ---STPNQYVASPQVGAGHSMVPP 57

Query: 66  AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 125
           AYPYPDPYYRSIF PYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK
Sbjct: 58  AYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 117

Query: 126 QYHGILRRRQSRAKAESENKVLKSRK 151
           QYHGILRRRQSRAKAESENK LKSRK
Sbjct: 118 QYHGILRRRQSRAKAESENKALKSRK 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638418|gb|ACU19519.1| unknown [Glycine max]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 118/147 (80%), Gaps = 6/147 (4%)

Query: 8   SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNV--QYAT-HQVGAGHAMAP 64
           +S HD++DN D  +Q+   ES +Q  +   G+S P I+T NV  QYA   Q+G GHAM P
Sbjct: 2   TSAHDLTDNEDDGQQQS--ESPMQPPS-VNGISDPGISTQNVNVQYAAPGQLGTGHAMVP 58

Query: 65  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 124
             YPYPDPYYRSIFAPYD QPYPPQ Y GQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA
Sbjct: 59  HVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 118

Query: 125 KQYHGILRRRQSRAKAESENKVLKSRK 151
           KQYHGILRRRQ RAKAESENK++++RK
Sbjct: 119 KQYHGILRRRQYRAKAESENKIIRNRK 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512572|ref|XP_003524992.1| PREDICTED: nuclear transcription factor Y subunit A-7-like [Glycine max]

 Score =  201 bits (511), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 118/147 (80%), Gaps = 6/147 (4%)

Query: 8   SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNV--QYAT-HQVGAGHAMAP 64
           +S HD++DN D  +Q+   ES +Q  +   G+S P I+T NV  QYA   Q+G GHAM P
Sbjct: 2   TSAHDLTDNEDDGQQQS--ESPMQPPS-VNGISDPGISTQNVNVQYAAPGQLGTGHAMVP 58

Query: 65  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 124
             YPYPDPYYRSIFAPYD QPYPPQ Y GQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA
Sbjct: 59  HVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 118

Query: 125 KQYHGILRRRQSRAKAESENKVLKSRK 151
           KQYHGILRRRQ RAKAESENK++++RK
Sbjct: 119 KQYHGILRRRQYRAKAESENKIIRNRK 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490734|ref|XP_004158691.1| PREDICTED: nuclear transcription factor Y subunit A-7-like, partial [Cucumis sativus]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/144 (78%), Positives = 122/144 (84%), Gaps = 3/144 (2%)

Query: 8   SSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHAMAPAAY 67
           +S  D SDN +ADEQRK+ ESQ  SS+   G++    +TPN   A+ QVGAGH+M P AY
Sbjct: 2   ASETDCSDNGEADEQRKYSESQNHSSSVINGLNQ---STPNQYVASPQVGAGHSMVPPAY 58

Query: 68  PYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQY 127
           PYPDPYYRSIF PYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQY
Sbjct: 59  PYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQY 118

Query: 128 HGILRRRQSRAKAESENKVLKSRK 151
           HGILRRRQSRAKAESENK LKSRK
Sbjct: 119 HGILRRRQSRAKAESENKALKSRK 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555881|ref|XP_003546258.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 1 [Glycine max] gi|356555883|ref|XP_003546259.1| PREDICTED: nuclear transcription factor Y subunit A-7-like isoform 2 [Glycine max]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 121/147 (82%), Gaps = 4/147 (2%)

Query: 6   MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATH-QVGAGHAMAP 64
           MT+S  D+SDN +ADEQ++  E Q+Q  + A G+SH  I T NVQYAT  Q+G GHA+ P
Sbjct: 1   MTTSTRDISDN-EADEQQQ-SEPQMQHLS-ANGISHAGIGTQNVQYATPPQLGTGHAVVP 57

Query: 65  AAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNA 124
             YPYPDPYYRSIFAPYDAQ YPPQPYGG PMVHLQLMGIQQAGVPLPTD VEEPVFVNA
Sbjct: 58  PTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNA 117

Query: 125 KQYHGILRRRQSRAKAESENKVLKSRK 151
           KQYHGILRRRQSRAKAESE K  ++RK
Sbjct: 118 KQYHGILRRRQSRAKAESEKKAARNRK 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.317	0.277	0.763	3.1e-26
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.768	0.7	0.479	7.6e-25
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.312	0.175	0.6	2.9e-14
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.283	0.161	0.632	1.6e-11
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.271	0.143	0.645	2.1e-11
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.289	0.183	0.58	1.1e-10
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.300	0.152	0.547	1.4e-10
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.312	0.175	0.545	2.9e-10
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.231	0.148	0.536	2e-08
UNIPROTKB|Q5ZMH7	274	NFYA "Uncharacterized protein"	0.248	0.156	0.577	2.8e-08

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 42/55 (76%), Positives = 48/55 (87%)

Query:    97 VHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
             V LQLMG+QQ GVPL  DAVEEPVFVNAKQYHGILRRRQSRAK E+ N+ +K++K
Sbjct:    77 VQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKK 131

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 70/146 (47%), Positives = 88/146 (60%)

Query:     6 MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHXXXXX 65
             MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T  V Y+    G  +     
Sbjct:     1 MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVTSLV-YS--DPGTTNSMAPG 56

Query:    66 XXXXXXXXXRSIFXXXXXXXXXXXXXXXXXMVHLQLMGIQQAGVPLPTDAVEEPVFVNAK 125
                      RSIF                  VHLQLMG+QQ GVPLP+DAVEEPVFVNAK
Sbjct:    57 QYPYPDPYYRSIFAPPPQPYTG---------VHLQLMGVQQQGVPLPSDAVEEPVFVNAK 107

Query:   126 QYHGILRRRQSRAKAESENKVLKSRK 151
             QYHGILRRRQSRA+ ES+NKV+KSRK
Sbjct:   108 QYHGILRRRQSRARLESQNKVIKSRK 133

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query:    98 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
             HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR+ RAK E++NK++K RK
Sbjct:   157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRK 211

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query:   103 GIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
             G+  + +PLP +  +EPVFVNAKQY  ILRRRQ+RAKAE E K++KSRK
Sbjct:   151 GMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRK 199

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 31/48 (64%), Positives = 39/48 (81%)

Query:   105 QQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
             Q   VPLP D +E EPVFVNAKQ+H I+RRRQ RAK E++NK++K+RK
Sbjct:   158 QMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARK 205

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 29/50 (58%), Positives = 38/50 (76%)

Query:   102 MGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
             +G+ +    LP D  +EPV+VNAKQY GILRRR++RAKAE E KV++ RK
Sbjct:   156 LGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRK 205

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query:   100 QLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
             Q++ +    VPLP +  E +PVFVNAKQYH I+RRRQ RAK E++NK++++RK
Sbjct:   160 QMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARK 212

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query:    98 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
             H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR+ RAK E++NK++K RK
Sbjct:   150 HPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRK 204

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query:   109 VPLPTDAVEE-PVFVNAKQYHGILRRRQSRAKAESENKVLK 148
             +PL  +  E+  ++VN+KQYHGI+RRRQSRAKAE  ++  K
Sbjct:   124 IPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAEKLSRCRK 164

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

UNIPROTKB|Q5ZMH7 NFYA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 131 (51.2 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query:   109 VPLPTDAV--EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
             +PLP   +  EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+
Sbjct:   179 IPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERR 223

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84JP1	NFYA7_ARATH	No assigned EC number	0.6095	0.7687	0.7	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02360004 hypothetical protein (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	5e-17
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	1e-15

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score = 70.4 bits (173), Expect = 5e-17
 Identities = 26/35 (74%), Positives = 33/35 (94%)

Query: 117 EEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           +EP++VNAKQYH ILRRRQ+RAK E+ENK++KSRK
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRK 35

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score = 67.1 bits (164), Expect = 1e-15
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 115 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           A EEPV+VNAKQYH ILRRRQ+RAK E++ K+ K RK
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERK 37

Length = 62

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	99.96
smart00521	62	CBF CCAAT-Binding transcription Factor.	99.89
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	99.87
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	98.69

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=99.96  E-value=1.4e-29  Score=221.13  Aligned_cols=96  Identities=38%  Similarity=0.545  Sum_probs=79.2

Q ss_pred             CcccccC-CCCCCCCCcccccccCCCCCCCCCCCCCCCcccccccCCCC-CCCCCCCCCCC-CceEecchhhHHHHHHHH
Q 030677           59 GHAMAPA-AYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQ-AGVPLPTDAVE-EPVFVNAKQYHGILRRRQ  135 (173)
Q Consensus        59 ghsma~~-~yPY~DpyyGg~~aaY~~q~~~~~~yg~q~m~hpq~~Gm~~-~rvpLP~~~~e-ePiyVNaKQY~rILrRRq  135 (173)
                      .|..+++ .+|+.+|+|+|++..++  +|.+++..   .+++|++|+.+ .|+|||.++.| |||||||||||||||||+
T Consensus       127 ~~~~~~~s~~~~~~p~~~g~~~~~~--~y~~~~~~---~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq  201 (307)
T KOG1561|consen  127 MSPANNTSGNPITSPHYRGVLDMSG--AYSGQPTN---TASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQ  201 (307)
T ss_pred             cccccccccCCCCCCcccceecccc--cccCCCCc---cccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHH
Confidence            4444444 47899999999999544  22222332   25778999988 99999998877 999999999999999999


Q ss_pred             HHHHHHhhccccccccccchhhcc
Q 030677          136 SRAKAESENKVLKSRKACHKLQVL  159 (173)
Q Consensus       136 ~RaKlE~~~kl~k~RKpYlhe~~~  159 (173)
                      +|||||+++||+|+|||||||+-|
T Consensus       202 ~RaKlEa~~klik~RkpYLHESRH  225 (307)
T KOG1561|consen  202 ARAKLEATTKLIKARKPYLHESRH  225 (307)
T ss_pred             HHhhhhhcccchhhcCccccchhh
Confidence            999999999999999999999865

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=99.89  E-value=5.2e-24  Score=150.96  Aligned_cols=45  Identities=58%  Similarity=0.740  Sum_probs=42.7

Q ss_pred             CCCCceEecchhhHHHHHHHHHHHHHHhhccccccccccchhhcc
Q 030677          115 AVEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKACHKLQVL  159 (173)
Q Consensus       115 ~~eePiyVNaKQY~rILrRRq~RaKlE~~~kl~k~RKpYlhe~~~  159 (173)
                      ++|+||||||||||+|||||++|||+|+++|++|.|||||||+=|
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH   45 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRH   45 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhH
Confidence            368999999999999999999999999999999999999999865

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=99.87  E-value=2.7e-23  Score=145.66  Aligned_cols=43  Identities=58%  Similarity=0.782  Sum_probs=41.4

Q ss_pred             CCceEecchhhHHHHHHHHHHHHHHhhccc-cccccccchhhcc
Q 030677          117 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKACHKLQVL  159 (173)
Q Consensus       117 eePiyVNaKQY~rILrRRq~RaKlE~~~kl-~k~RKpYlhe~~~  159 (173)
                      |||||||||||++|||||++|||+|+++|+ +|.|||||||+-|
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH   44 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRH   44 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHH
Confidence            699999999999999999999999999999 9999999999865

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=98.69  E-value=4.7e-09  Score=90.44  Aligned_cols=43  Identities=23%  Similarity=0.142  Sum_probs=36.7

Q ss_pred             CCCceEecchhhHHHHHHHHHHHHHHhhccccccccccchhhccC
Q 030677          116 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRKACHKLQVLC  160 (173)
Q Consensus       116 ~eePiyVNaKQY~rILrRRq~RaKlE~~~kl~k~RKpYlhe~~~~  160 (173)
                      .+.|.|||||||++|+|||-+|++|+..-+.  .|.-||||.+|-
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~~~~~--~r~~ylHesrhk  199 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDDSVSA--GRAFYLHESRHK  199 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHHHhhh--hhhhccccchhh
Confidence            3689999999999999999999999886664  444599999874

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		1e-07

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 116 VEEPVFVNAKQYHGILRRRQSRAKAESENKVLKSRK 151
           +EEP++VNAKQYH IL+RRQ+RAK E+E K+ K R+
Sbjct: 1   MEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERR 36

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	99.86

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=99.86  E-value=5.8e-23  Score=145.37  Aligned_cols=44  Identities=41%  Similarity=0.613  Sum_probs=40.2

Q ss_pred             CCCceEecchhhHHHHHHHHHHHHHHhhcccc-ccccccchhhcc
Q 030677          116 VEEPVFVNAKQYHGILRRRQSRAKAESENKVL-KSRKACHKLQVL  159 (173)
Q Consensus       116 ~eePiyVNaKQY~rILrRRq~RaKlE~~~kl~-k~RKpYlhe~~~  159 (173)
                      .||||||||||||+|||||++|||+|+++|++ |.|||||||+-|
T Consensus         1 ~eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH   45 (64)
T 4g92_A            1 MESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRH   45 (64)
T ss_dssp             --CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHH
T ss_pred             CCCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHH
Confidence            37999999999999999999999999999995 899999999865

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00