Citrus Sinensis ID: 030688

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEccccccccHHHHHHHHccccccccccccccccEEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEccccEEEEccccccHHHHHHHHHHHHccccccccccccEEEEEEcccccEEEEccccccccccccccccccccccccccccEEEcccccccccc
Coil and Loop (DISEMBL)
mdrvrrpdrsdvhlsreeEAKMEDEVRENfenlapkrhtkpqrsdyssqyvdafangsdsnqeySQFQhlqandsqvCFHFEQKliwngsevteefqeteyykdlnrinkdhhttgtgfikmenangksfilapdnddahhssckgnpatnewipsaddsvvfssdkpkrsen
Flexible Loop (DISEMBL)
mdrvrrpdrsdvhlsreeeakmedevrenfenlapkrhtkpqrsdyssQYVDAFANGSDSNQEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENANGKSFILAPDNDDAHHSSCKGNPatnewipsaddsvvfssdkpkrsen
Low Complexity Region (SEG)
MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN
Disordered region (IsUnstruct)
*********************************************************************LQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENA****FI******************************************
Disordered Region (DISOPRED)
***********************DEVRENFENLA**************************NQEYSQFQHL****************WNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENANGKSFIL**************NPATNEWIPSADDS*************
Disordered Region (DISEMBL)
*************LSREEEAKMEDEVRENFENLAPK**********SSQYVDAFANGSDSNQEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSV************
Disordered Region (DISPRO)
***********************DEVRENFENLAPK**********************DSNQEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENANGKSFILAPDND**HHSSCKGNPATNEWIPSADDSVVFS*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
255558834	166	conserved hypothetical protein [Ricinus	0.953	0.993	0.591	2e-52
356566203	169	PREDICTED: uncharacterized protein LOC10	0.959	0.982	0.590	4e-50
300432698	169	conserved hypothetical protein 9 [Hevea	0.924	0.946	0.610	2e-49
300432702	169	conserved hypothetical protein 11 [Hevea	0.924	0.946	0.598	2e-49
388511711	167	unknown [Lotus japonicus]	0.953	0.988	0.588	9e-47
351734542	171	uncharacterized protein LOC100306349 [Gl	0.959	0.970	0.567	3e-46
225434704	166	PREDICTED: uncharacterized protein LOC10	0.953	0.993	0.597	6e-45
300432700	166	conserved hypothetical protein 10 [Hevea	0.855	0.891	0.606	2e-44
217070972	166	unknown [Medicago truncatula]	0.942	0.981	0.579	3e-43
224106331	168	predicted protein [Populus trichocarpa]	0.953	0.982	0.568	4e-43

>gi|255558834|ref|XP_002520440.1| conserved hypothetical protein [Ricinus communis] gi|223540282|gb|EEF41853.1| conserved hypothetical protein [Ricinus communis]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 128/174 (73%), Gaps = 9/174 (5%)

Query: 1   MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDS 60
           M+  RRP+RSD+H++ EEE ++E E R++F+ LAPKRHTKPQRS+YSSQY DA       
Sbjct: 1   MECYRRPNRSDIHMTMEEEVRIEAETRDHFDGLAPKRHTKPQRSEYSSQYADANPLHPTF 60

Query: 61  NQEYSQFQHLQANDSQVCFHFEQKLIWNG-SEVTEEFQETEYYKDLNRINKDHHTTGTGF 119
             E+ +FQ LQ +         QKL +NG  E  +EF ETEYY+DLN I+K HHTTGTGF
Sbjct: 61  TPEFLEFQRLQTD--------PQKLRYNGKGEAGQEFAETEYYEDLNCIDKQHHTTGTGF 112

Query: 120 IKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 173
           IKMENANGK F LAPD+    H+SCKGNPATN+WIP+A D+  F+SDKPKRS+N
Sbjct: 113 IKMENANGKGFTLAPDSVTCCHASCKGNPATNDWIPAAADTATFASDKPKRSDN 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566203|ref|XP_003551324.1| PREDICTED: uncharacterized protein LOC100811254 [Glycine max]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 104/176 (59%), Positives = 130/176 (73%), Gaps = 10/176 (5%)

Query: 1   MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDS 60
           M+   RP+RSD+HLS EEEA +E + RE F+ +AP+RHTKPQRSDYS+QYVDAF+N   S
Sbjct: 1   MECYTRPNRSDIHLSAEEEATIEAKTREYFDGVAPQRHTKPQRSDYSAQYVDAFSNAHHS 60

Query: 61  N---QEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGT 117
           +    E +QFQ LQ ND Q     E+KL++NGS+V EEF ETEYY+DLN ++K HHTTGT
Sbjct: 61  SLTIPELTQFQLLQ-NDPQ-----EKKLVYNGSQVPEEFVETEYYQDLNSVDKHHHTTGT 114

Query: 118 GFIKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 173
           GFIK+E  NG  F + PDND   H SCKGNPATN+W+P+    V F+S KP RS+N
Sbjct: 115 GFIKVEK-NGNDFHIEPDNDTGCHHSCKGNPATNDWVPAPSTEVGFNSGKPNRSDN 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300432698|gb|ADK13066.1| conserved hypothetical protein 9 [Hevea brasiliensis]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/172 (61%), Positives = 129/172 (75%), Gaps = 12/172 (6%)

Query: 6   RPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDA--FANGSDSN-Q 62
           RP RSD+HLS EEEAK+++E +E F+ LA KRH+KPQRS++S+QYVDA  F N   S+  
Sbjct: 6   RPHRSDIHLSAEEEAKIQEETKEYFDGLAAKRHSKPQRSEFSAQYVDALPFTNSLPSSIP 65

Query: 63  EYSQFQHLQANDSQVCFHFEQKLIWNG-SEVTEEFQETEYYKDLNRINKDHHTTGTGFIK 121
           E  +FQ L+ ND Q       KL+ NG  +V E+F ETEYYKDLN I+K HHTTGTGFIK
Sbjct: 66  ELVKFQRLE-NDPQ-------KLVCNGNGQVGEDFVETEYYKDLNCIDKKHHTTGTGFIK 117

Query: 122 MENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 173
           MEN NGKSF LAPD     H+SC+GNPATNEWIP+A ++V  +SDKPKRS+N
Sbjct: 118 MENINGKSFSLAPDPVSCCHASCRGNPATNEWIPAAANTVTLASDKPKRSDN 169

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300432702|gb|ADK13068.1| conserved hypothetical protein 11 [Hevea brasiliensis]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 128/172 (74%), Gaps = 12/172 (6%)

Query: 6   RPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFA---NGSDSNQ 62
           RP RSD+HL+ EEEAK+++E +E F+ LA KRH+KPQRS++S+QYVDAF    +   S  
Sbjct: 6   RPHRSDIHLAAEEEAKIQEETKEYFDGLAAKRHSKPQRSEFSAQYVDAFPFTNSLPSSIP 65

Query: 63  EYSQFQHLQANDSQVCFHFEQKLIWNG-SEVTEEFQETEYYKDLNRINKDHHTTGTGFIK 121
           E  +FQ L+ ND Q       KL+ NG  +V E+F ETEYYKDLN I+K HHTTGTGFIK
Sbjct: 66  ELVEFQRLE-NDPQ-------KLVCNGNGQVGEDFVETEYYKDLNCIDKKHHTTGTGFIK 117

Query: 122 MENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 173
           MEN NGKSF LAPD     H+SC+GNPATNEWIP+A ++V  +SDKPKRS+N
Sbjct: 118 MENINGKSFSLAPDPVSCCHASCRGNPATNEWIPAAANTVTLASDKPKRSDN 169

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511711|gb|AFK43917.1| unknown [Lotus japonicus]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 103/175 (58%), Positives = 126/175 (72%), Gaps = 10/175 (5%)

Query: 1   MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANG--S 58
           M+   RP+RSD HLS EEEA +E + RE FE  APKRHTKPQRS+YSSQYVD   NG  +
Sbjct: 1   MECCGRPNRSDSHLSAEEEATIEAQTREYFEEGAPKRHTKPQRSEYSSQYVDNI-NGVSN 59

Query: 59  DSNQEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTG 118
           DS  E  QFQ L+ ND Q     E+KL++NG++V EEF ETEYYKDLN ++K HHTTG G
Sbjct: 60  DSTPEMLQFQRLE-NDPQ-----EKKLVYNGNQVAEEFVETEYYKDLNNVDKHHHTTGKG 113

Query: 119 FIKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 173
           FI+++ + G  F + PDND  HH S KGNPATNEW+P+     VF+SDKP RS+N
Sbjct: 114 FIQVDKS-GTGFHIEPDNDTGHHHSSKGNPATNEWVPAPSTEDVFNSDKPSRSDN 167

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734542|ref|NP_001237416.1| uncharacterized protein LOC100306349 [Glycine max] gi|255628273|gb|ACU14481.1| unknown [Glycine max]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/178 (56%), Positives = 129/178 (72%), Gaps = 12/178 (6%)

Query: 1   MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDS 60
           M+   RP+RSD+HLS EEEA +E + R+ F+ +AP+RHTKPQRS+YS+Q VDAF+N   S
Sbjct: 1   MEFYTRPNRSDIHLSAEEEATIEAKTRDYFDGVAPQRHTKPQRSEYSAQNVDAFSNAHHS 60

Query: 61  NQ-----EYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTT 115
           +      E+ QFQ L+ ND Q     E+KL +NGS+V EEF ETEYY+DLN ++K HHTT
Sbjct: 61  SSSSSIPEFMQFQRLE-NDPQ-----EKKLEYNGSQVPEEFVETEYYQDLNSVDKHHHTT 114

Query: 116 GTGFIKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 173
           GTGFIK+E  NG  F + PDND   H SCK NPATN+W+PS  + V F+SDKP RS+N
Sbjct: 115 GTGFIKVE-KNGNDFHIEPDNDTGCHHSCKCNPATNDWVPSPSNEVGFNSDKPNRSDN 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434704|ref|XP_002280988.1| PREDICTED: uncharacterized protein LOC100258718 [Vitis vinifera] gi|297745958|emb|CBI16014.3| unnamed protein product [Vitis vinifera]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 104/174 (59%), Positives = 133/174 (76%), Gaps = 9/174 (5%)

Query: 1   MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDS 60
           M+   RP+RSDVHL++EE A++E+E R+ F+ +APKRH KP RS++SSQYVD  ++    
Sbjct: 1   MECCGRPNRSDVHLTQEEAARIEEETRDYFDGIAPKRHAKPSRSEHSSQYVDPPSDRQHE 60

Query: 61  N-QEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGF 119
           +  E+ +FQHL+ ND Q       KL+++GSEVTEEF ETEYY+DLN I+K HHTTGTGF
Sbjct: 61  DIPEFLKFQHLE-NDPQ-------KLVYSGSEVTEEFVETEYYQDLNCIDKQHHTTGTGF 112

Query: 120 IKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 173
           IKMENA+GKSF LA ++     +SCKGNPATN+WIP+A D V FSSDKP RSEN
Sbjct: 113 IKMENADGKSFNLAANSATCCQASCKGNPATNDWIPAAADKVAFSSDKPNRSEN 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300432700|gb|ADK13067.1| conserved hypothetical protein 10 [Hevea brasiliensis]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 119/160 (74%), Gaps = 12/160 (7%)

Query: 6   RPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDA--FANGSDSN-Q 62
           RP RSD+HLS EEEAK+++E +E F+ LA KRH+KPQRS++S+QYVDA  F N   S+  
Sbjct: 6   RPHRSDIHLSAEEEAKIQEETKEYFDGLAAKRHSKPQRSEFSAQYVDALPFTNSLPSSIP 65

Query: 63  EYSQFQHLQANDSQVCFHFEQKLIWNG-SEVTEEFQETEYYKDLNRINKDHHTTGTGFIK 121
           E  +FQ L+ ND Q       KL+ NG  +V E+F ETEYYKDLN I+K HHTTGTGFIK
Sbjct: 66  ELVKFQRLE-NDPQ-------KLVCNGNGQVGEDFVETEYYKDLNCIDKKHHTTGTGFIK 117

Query: 122 MENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSV 161
           MEN NGKSF LAPD     H+SC+GNPATNEWIP+A ++V
Sbjct: 118 MENINGKSFSLAPDPVSCCHASCRGNPATNEWIPAAANTV 157

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217070972|gb|ACJ83846.1| unknown [Medicago truncatula]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 132/176 (75%), Gaps = 13/176 (7%)

Query: 1   MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSD- 59
           M+ VRRP+RSD HLS EEEA +E + R +FE +APKRHTKPQRS+Y+SQYVD+  N SD 
Sbjct: 1   MEDVRRPNRSDTHLSAEEEASIEAKTRHHFEEVAPKRHTKPQRSEYASQYVDS--NVSDN 58

Query: 60  SNQEYSQFQHLQANDSQVCFHFEQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGF 119
           S  E  QFQ L+ ND Q     E+KL+++G+EV+EEF ETEYYKDLN ++K HHTTG GF
Sbjct: 59  SVPEMLQFQRLE-NDPQ-----EKKLVYDGNEVSEEFVETEYYKDLNSVDKHHHTTGKGF 112

Query: 120 IKMENANGKSFILAPDND--DAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 173
           I++E ++  SF + PDND  D+HHS+ KGNPATN+W+P+       +SDKP RS+N
Sbjct: 113 IQVEKSDT-SFHIEPDNDTHDSHHST-KGNPATNDWVPAPFTEEDTNSDKPNRSDN 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106331|ref|XP_002314132.1| predicted protein [Populus trichocarpa] gi|222850540|gb|EEE88087.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 125/176 (71%), Gaps = 11/176 (6%)

Query: 1   MDRVRRPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDS 60
           M+  +RP+RSD H+S EEEAK E+E R  FE +APKRH+KPQRS+YS QYVD      D 
Sbjct: 1   MEFHKRPNRSDAHVSVEEEAKQEEETRGYFEGIAPKRHSKPQRSEYSIQYVDTLTTNGDQ 60

Query: 61  --NQEYSQFQHLQANDSQVCFHFEQKLIWN-GSEVTEEFQETEYYKDLNRINKDHHTTGT 117
             N EY +FQ L+ +         QK+I N  S+VT+EF ETEYY+DLN ++K HHTTGT
Sbjct: 61  SFNPEYVEFQRLETD--------PQKIISNESSKVTDEFVETEYYQDLNCVDKQHHTTGT 112

Query: 118 GFIKMENANGKSFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVFSSDKPKRSEN 173
           GFIK EN  GK F LAPD+  + H+SCKGNPATN+W+P+  D V  +SDKPKRS+N
Sbjct: 113 GFIKTENEYGKRFSLAPDSTSSCHASCKGNPATNDWVPADADMVTSASDKPKRSDN 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2115189	173	MEE59 "AT4G37300" [Arabidopsis	0.930	0.930	0.382	4.8e-23

TAIR|locus:2115189 MEE59 "AT4G37300" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 67/175 (38%), Positives = 100/175 (57%)

Query:     6 RPDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYS 65
             +P RSD     E++ K  +++R +F++LAPKR TKP RS+    +  +F+  SD   ++ 
Sbjct:     5 KPSRSDEISDPEQQIKNANQIRADFDSLAPKRPTKPTRSEPG--FPGSFS-ASDKITDHP 61

Query:    66 QFQHLQANDSQVCFHFEQKLIWNG--SEVTEEFQETEYYKDLNRINKDHHTTGTGFIKM- 122
             +    Q+  SQ   H   K++  G  S V +EF ETEYY +L  I+K HHTTG+GFI + 
Sbjct:    62 EADKFQSLQSQT--H--GKVLGEGDSSAVQDEFLETEYYSNLTAIDKQHHTTGSGFINVV 117

Query:   123 ENANGK---SFILAPDNDDAHHSSCKGNPATNEWIPSADDSVVF-SSDKPKRSEN 173
             +  NG+   +   A   D    +  + NPATNEWIP+ ++     SS KP RSE+
Sbjct:   118 KEDNGEESEAVTAAAIGDGGEKAVYRSNPATNEWIPATEEDFDSESSSKPNRSES 172


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.126   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      173       173   0.00097  108 3  11 23  0.49    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.64u 0.24s 22.88t   Elapsed:  00:00:01
  Total cpu time:  22.64u 0.24s 22.88t   Elapsed:  00:00:01
  Start:  Thu May  9 16:19:38 2013   End:  Thu May  9 16:19:39 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024173001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (166 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00