Citrus Sinensis ID: 030696

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
MDSTLRMASSIVLPIYPSYSPKLNHGSINSCKVGYGFQFSVCGSSRRICAVSPNGSVSPSACGGSESSSTGNEQRRRSSLESLFRYDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECGGRGHCGPK
ccccEEEccEEEEEEccccccccccccccccccccccEEcccccccEEEEEccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHccccccccccccccccEEEccccccccEEEEEEEEccEEEEEEEEcccccccEEccccccccccccc
cccHHHHHcccEcccccccccccccccEcEEEEEEccEEcccccEEEEEEcccccccccccccccHHccHccHHHccccHHHHHcccccccHHHccccccccHHHHccccccccccccccEEEEEEcccccccEHHHHHHcccEEEEEEEccccccccEEccccccccccccc
MDSTLRMASSivlpiypsyspklnhgsinsckvgygfqfsvcgssrricavspngsvspsacggsessstgneQRRRSSLESlfrydrpipeeriekpiglslsekvigdnprcteckakgavlcatcsgsglyvDSILESQGIIVKVrclgcggtgnimcaecggrghcgpk
MDSTLRMASSIVLPIYPSYSPKLNHGSINSCKVGYGFQFSVCGSSRRICAVSpngsvspsacggsessstgneqrrrssleslfrydrpipeeriekpiglslsekviGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTgnimcaecggrghcgpk
MDSTLRMASSIVLPIYPSYSPKLNHGSINSCKVGYGFQFSVCGSSRRICAVSPNGsvspsacggsessstgNEQRRRSSLESLFRYDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECGGRGHCGPK
*********SIVLPIYPSYSPKLNHGSINSCKVGYGFQFSVCGSSRRICAV***********************************************IGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECGGR******
********SSIVL******************KVGYGFQFSV*************************************SLESLFRYDRPIP***************V*GDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECG*RG*****
********SSIVLPIYPSYSPKLNHGSINSCKVGYGFQFSVCGSSRRICAVSP**************************LESLFRYDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECGGRGHCGPK
*****RMASSIVLPIYPSYSPKLNHGSINSCKVGYGFQFSVCGSSRRICAVS***********************RRSSLESLFRYDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECGGR******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDSTLRMASSIVLPIYPSYSPKLNHGSINSCKVGYGFQFSVCGSSRRICAVSPNGSVSPSACGGSESSSTGNEQRRRSSLESLFRYDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCAECGGRGHCGPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query173
224144856173 predicted protein [Populus trichocarpa] 0.820 0.820 0.767 2e-52
351722043172 uncharacterized protein LOC100306113 [Gl 0.791 0.796 0.715 9e-48
224123900111 predicted protein [Populus trichocarpa] 0.630 0.981 0.834 2e-46
449453818161 PREDICTED: uncharacterized protein LOC10 0.705 0.757 0.748 4e-46
356571783167 PREDICTED: uncharacterized protein LOC10 0.791 0.820 0.693 5e-46
388513217158 unknown [Lotus japonicus] 0.757 0.829 0.709 2e-45
225439213160 PREDICTED: uncharacterized protein LOC10 0.890 0.962 0.659 3e-45
357508859168 hypothetical protein MTR_7g086700 [Medic 0.589 0.607 0.803 9e-42
388503698168 unknown [Medicago truncatula] 0.589 0.607 0.794 3e-41
226494608149 uncharacterized protein LOC100275997 [Ze 0.606 0.704 0.723 5e-37
>gi|224144856|ref|XP_002325440.1| predicted protein [Populus trichocarpa] gi|222862315|gb|EEE99821.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 123/142 (86%)

Query: 32  KVGYGFQFSVCGSSRRICAVSPNGSVSPSACGGSESSSTGNEQRRRSSLESLFRYDRPIP 91
           K+GYGFQFS  G   +I A++PNGSV PSA    ESSS G+  RRRSSLESLF YD+PIP
Sbjct: 32  KIGYGFQFSGNGCITKISAITPNGSVFPSASSHGESSSMGDVHRRRSSLESLFCYDKPIP 91

Query: 92  EERIEKPIGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGIIVKVRCL 151
           EERIE+P+G+SL+ KVIGDNPRCT+C+AKGAVLC TCSGSGLYVDSI+ESQGIIVKVRCL
Sbjct: 92  EERIEEPVGVSLAAKVIGDNPRCTDCQAKGAVLCTTCSGSGLYVDSIMESQGIIVKVRCL 151

Query: 152 GCGGTGNIMCAECGGRGHCGPK 173
           GCGGTGNIMC+ECGG GH GPK
Sbjct: 152 GCGGTGNIMCSECGGLGHLGPK 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|351722043|ref|NP_001237742.1| uncharacterized protein LOC100306113 [Glycine max] gi|255627587|gb|ACU14138.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224123900|ref|XP_002319192.1| predicted protein [Populus trichocarpa] gi|222857568|gb|EEE95115.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449453818|ref|XP_004144653.1| PREDICTED: uncharacterized protein LOC101220837 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571783|ref|XP_003554052.1| PREDICTED: uncharacterized protein LOC100812164 [Glycine max] Back     alignment and taxonomy information
>gi|388513217|gb|AFK44670.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225439213|ref|XP_002276082.1| PREDICTED: uncharacterized protein LOC100241525 [Vitis vinifera] gi|296085904|emb|CBI31228.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357508859|ref|XP_003624718.1| hypothetical protein MTR_7g086700 [Medicago truncatula] gi|355499733|gb|AES80936.1| hypothetical protein MTR_7g086700 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388503698|gb|AFK39915.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|226494608|ref|NP_001143367.1| uncharacterized protein LOC100275997 [Zea mays] gi|195619066|gb|ACG31363.1| hypothetical protein [Zea mays] gi|414872062|tpg|DAA50619.1| TPA: hypothetical protein ZEAMMB73_213798 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query173
TAIR|locus:2175966154 AT5G17840 [Arabidopsis thalian 0.791 0.889 0.595 2.6e-40
TAIR|locus:2047426144 AT2G24860 [Arabidopsis thalian 0.312 0.375 0.350 1e-05
TAIR|locus:2079132136 AT3G47650 [Arabidopsis thalian 0.329 0.419 0.293 0.00037
TAIR|locus:2009482110 AT1G22630 [Arabidopsis thalian 0.294 0.463 0.327 0.00068
TAIR|locus:2175966 AT5G17840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 87/146 (59%), Positives = 108/146 (73%)

Query:    28 INSCKVGYGFQFSVCG-SSR-RICAVSPNGXXXXXXXXXXXXXXXXNEQRRRSSLESLFR 85
             + S  VG G + +  G SSR R+C++ P+                 +  R+RSSLES+F 
Sbjct:    15 VKSSSVG-GHRIASPGFSSRLRLCSLPPSSSIKAESCLKR------DVHRQRSSLESMFC 67

Query:    86 YDRPIPEERIEKPIGLSLSEKVIGDNPRCTECKAKGAVLCATCSGSGLYVDSILESQGII 145
             YD+PIPEE IE+P+GLS+SE+ IGDN RCT C+AKGA+LC+TCSG+GLYVDSI+ESQGII
Sbjct:    68 YDKPIPEEIIEEPVGLSMSEREIGDNQRCTCCEAKGALLCSTCSGTGLYVDSIMESQGII 127

Query:   146 VKVRCLGCGGTGNIMCAECGGRGHCG 171
             VKVRCLGCGG+GNIMC  CGGRGH G
Sbjct:   128 VKVRCLGCGGSGNIMCKLCGGRGHVG 153
GO:0009507 "chloroplast" evidence=ISM
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
TAIR|locus:2047426 AT2G24860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079132 AT3G47650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009482 AT1G22630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003827001
SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (120 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query173
PRK14291 382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 3e-07
TIGR02349 354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 1e-04
PRK14277 386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 5e-04
PRK14290 365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 0.001
PRK14279 392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 0.001
PRK10767 371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 0.002
PRK14282 369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 0.002
COG0484 371 COG0484, DnaJ, DnaJ-class molecular chaperone with 0.002
PRK14301 373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 0.002
PRK14297 380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 0.003
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information 
 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 21/111 (18%)

Query: 75  RRRSSLESLFRYDRPIPEERIEKPIGLSLSEKVIGDN-----PR---CTEC------KAK 120
           RRR++ E    Y RP+  E I + + +SL E   G       PR   C  C         
Sbjct: 112 RRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGS 171

Query: 121 GAVLCATCSGSGLYVDSILESQGII-VKVRCLGCGGTGNIM--CAECGGRG 168
           G  +C TC GSG     I +  G   +   C  CGG G +   C++C GRG
Sbjct: 172 GEKVCPTCGGSG----EIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRG 218

Length = 382
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 173
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 99.49
PRK14298 377 chaperone protein DnaJ; Provisional 99.29
PRK14282 369 chaperone protein DnaJ; Provisional 99.28
PRK14279 392 chaperone protein DnaJ; Provisional 99.27
PRK14286 372 chaperone protein DnaJ; Provisional 99.26
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 99.26
PRK14278 378 chaperone protein DnaJ; Provisional 99.25
PRK14301 373 chaperone protein DnaJ; Provisional 99.23
PRK14285 365 chaperone protein DnaJ; Provisional 99.23
PRK14276 380 chaperone protein DnaJ; Provisional 99.23
PRK14277 386 chaperone protein DnaJ; Provisional 99.22
PRK14280 376 chaperone protein DnaJ; Provisional 99.22
PRK14300 372 chaperone protein DnaJ; Provisional 99.22
PRK14284 391 chaperone protein DnaJ; Provisional 99.22
PRK10767 371 chaperone protein DnaJ; Provisional 99.21
PRK14296 372 chaperone protein DnaJ; Provisional 99.21
PRK14295 389 chaperone protein DnaJ; Provisional 99.21
PRK14281 397 chaperone protein DnaJ; Provisional 99.2
PRK14294 366 chaperone protein DnaJ; Provisional 99.2
PRK14288 369 chaperone protein DnaJ; Provisional 99.2
PRK14287 371 chaperone protein DnaJ; Provisional 99.18
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 99.16
PRK14289 386 chaperone protein DnaJ; Provisional 99.16
PRK14297 380 chaperone protein DnaJ; Provisional 99.16
PRK14291 382 chaperone protein DnaJ; Provisional 99.14
PLN03165111 chaperone protein dnaJ-related; Provisional 99.13
PTZ00037 421 DnaJ_C chaperone protein; Provisional 99.12
PRK14293 374 chaperone protein DnaJ; Provisional 99.12
PRK14290 365 chaperone protein DnaJ; Provisional 99.11
PRK14283 378 chaperone protein DnaJ; Provisional 99.1
PRK14292 371 chaperone protein DnaJ; Provisional 99.09
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 98.79
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 98.75
PRK14279 392 chaperone protein DnaJ; Provisional 97.93
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 97.91
PRK14288 369 chaperone protein DnaJ; Provisional 97.89
PRK14296 372 chaperone protein DnaJ; Provisional 97.85
KOG2813 406 consensus Predicted molecular chaperone, contains 97.83
PRK14298 377 chaperone protein DnaJ; Provisional 97.82
PRK14281 397 chaperone protein DnaJ; Provisional 97.81
PRK14286 372 chaperone protein DnaJ; Provisional 97.8
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 97.8
PRK14282 369 chaperone protein DnaJ; Provisional 97.79
PRK14280 376 chaperone protein DnaJ; Provisional 97.75
PRK14301 373 chaperone protein DnaJ; Provisional 97.75
PRK14290 365 chaperone protein DnaJ; Provisional 97.74
PRK14285 365 chaperone protein DnaJ; Provisional 97.72
PRK14295 389 chaperone protein DnaJ; Provisional 97.72
PTZ00037 421 DnaJ_C chaperone protein; Provisional 97.71
PRK14276 380 chaperone protein DnaJ; Provisional 97.71
KOG2813 406 consensus Predicted molecular chaperone, contains 97.71
PRK14278 378 chaperone protein DnaJ; Provisional 97.71
PRK14284 391 chaperone protein DnaJ; Provisional 97.7
PRK14300 372 chaperone protein DnaJ; Provisional 97.7
PRK14294 366 chaperone protein DnaJ; Provisional 97.68
PRK14297 380 chaperone protein DnaJ; Provisional 97.68
PRK10767 371 chaperone protein DnaJ; Provisional 97.67
PRK14277 386 chaperone protein DnaJ; Provisional 97.65
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 97.57
PRK14287 371 chaperone protein DnaJ; Provisional 97.56
PRK14289 386 chaperone protein DnaJ; Provisional 97.54
PRK14291 382 chaperone protein DnaJ; Provisional 97.43
PRK14293 374 chaperone protein DnaJ; Provisional 97.38
PRK14292 371 chaperone protein DnaJ; Provisional 97.33
PRK14283 378 chaperone protein DnaJ; Provisional 97.28
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 97.11
PLN03165111 chaperone protein dnaJ-related; Provisional 96.79
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 96.71
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 96.2
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 96.04
KOG2824281 consensus Glutaredoxin-related protein [Posttransl 95.61
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 95.57
cd03031147 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d 94.4
cd03031147 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d 87.64
KOG2824281 consensus Glutaredoxin-related protein [Posttransl 82.43
TIGR00630 924 uvra excinuclease ABC, A subunit. This family is b 80.73
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.49  E-value=5.8e-14  Score=125.77  Aligned_cols=61  Identities=34%  Similarity=0.843  Sum_probs=50.6

Q ss_pred             CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEecc
Q 030696          110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCGP  172 (173)
Q Consensus       110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~~  172 (173)
                      +.+.|+.|+|+|+      ++|++|+|+|++.  +.+..|.++. ++|++|+|+|+++   |++|+|.|++..
T Consensus       141 ~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~--~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~  211 (371)
T COG0484         141 RSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVR--TVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKK  211 (371)
T ss_pred             eeeECCcCCCCCCCCCCCCCcCCCCCCcCeEE--EEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEee
Confidence            4789999999987      7999999999943  2221277665 9999999999999   999999999753

>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs Back     alignment and domain information
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs Back     alignment and domain information
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00630 uvra excinuclease ABC, A subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query173
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 4e-04
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104 Back     alignment and structure
 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 14/67 (20%)

Query: 113 RCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVKVR-CLGCGGTGNIM---CA 162
            C  C  KG         C  C GSG        + G  V    C  CGG G+I+   C 
Sbjct: 30  TCERCNGKGNEPGTKVQHCHYCGGSG----METINTGPFVMRSTCRRCGGRGSIIISPCV 85

Query: 163 ECGGRGH 169
            C G G 
Sbjct: 86  VCRGAGQ 92

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query173
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 99.51
1nlt_A 248 Protein YDJ1, mitochondrial protein import protein 99.29
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 99.25
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 98.54
1nlt_A 248 Protein YDJ1, mitochondrial protein import protein 98.25
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 97.9
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 97.1
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 96.83
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 96.72
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 96.48
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.51  E-value=2.4e-14  Score=105.30  Aligned_cols=59  Identities=36%  Similarity=0.806  Sum_probs=50.0

Q ss_pred             CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEecc
Q 030696          110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCGP  172 (173)
Q Consensus       110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~~  172 (173)
                      +.+.|+.|+|+|.      .+|+.|+|+|++    ...+|+++. ++|+.|.|+|+++   |+.|+|.|++..
T Consensus        27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~----~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~   95 (104)
T 2ctt_A           27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGME----TINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQ   95 (104)
T ss_dssp             CCEECSSSSSSSSCTTCCCEECSSSSSSCEE----EEEETTEEEEEECSSSSSSSEECSSCCSSSSSCSEECC
T ss_pred             eeeECCCCcCCccCCCCCCccCCCCCCCEEE----EEEeCCEEEEEECCcCCCcceECCCcCCCCCCeeEEEE
Confidence            4789999999996      679999999993    333476655 8999999999997   999999998853
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query173
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 99.33
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 99.25
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 98.24
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 97.63
d1m1qa_90 Flavocytochrome c3 (respiratory fumarate reductase 96.79
d1m1qa_90 Flavocytochrome c3 (respiratory fumarate reductase 87.36
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=4.5e-13  Score=92.96  Aligned_cols=58  Identities=34%  Similarity=0.835  Sum_probs=49.9

Q ss_pred             CCccCCCCCccCc------ccCCCCCCceEEeeeEEeecCeEEE-EeCCCCCccceEe---CCCCcCeeEec
Q 030696          110 DNPRCTECKAKGA------VLCATCSGSGLYVDSILESQGIIVK-VRCLGCGGTGNIM---CAECGGRGHCG  171 (173)
Q Consensus       110 ~~~~C~~C~GsG~------~~C~~C~GsG~~v~~i~~~~G~~~~-~~C~~C~G~G~ii---C~~C~G~G~v~  171 (173)
                      +++.|+.|+|+|+      ..|+.|+|+|+    +....|+++. ++|+.|+|+|+++   |+.|+|+|++.
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~----v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~   77 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQ----VQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSE----EEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeE----EEEecccceeeEECcccCcceeECCCCCCCCCCceEee
Confidence            4889999999996      66999999998    5555566554 8999999999997   99999999874
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure