Citrus Sinensis ID: 030711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHHcccccEEEEEEEEEEEEEEccccccccccccccccccccEEEEcHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcEccEEEEEEccccEEccccHHHHHHHHHHccccEccccEEEEEEEEccccHHcccccccccccccccEEccccccHHHEHHccHHHHHHHHHHHHHHHccccHHHHcccccc
Coil and Loop (DISEMBL)
mdglpsgyrpnvgvclinsdsqIFVASrlnvpgawqmpqggiedgedpKLAAMRELREETGIVSAEIIAEvpnwltydfppavktkvnrlwggewhGQAQKWFLMKLTndeseinlangeadpefaewkwaspeEVVEQAVDYKRPTYEEVMRTFRPYlnengiaakcksakw
Flexible Loop (DISEMBL)
mdglpsgyRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEvpnwltydfpPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFrpylnengiaakcksakw
Low Complexity Region (SEG)
MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW
Disordered region (IsUnstruct)
*********PNVGVCLINSDSQIFVASRLNVPGAWQM********************EETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIA********
Disordered Region (DISOPRED)
**GLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN*************
Disordered Region (DISEMBL)
MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW
Disordered Region (DISPRO)
***LPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENG**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q9C6Z2	175	Nudix hydrolase 25 OS=Ara	yes	no	1.0	0.988	0.828	5e-82
Q9CAF2	216	Nudix hydrolase 26, chlor	no	no	0.924	0.740	0.602	4e-56
Q9FNH4	227	Nudix hydrolase 27, chlor	no	no	0.895	0.682	0.589	8e-52
B9KN59	162	RNA pyrophosphohydrolase	yes	no	0.890	0.950	0.475	5e-36
Q3IZC1	162	RNA pyrophosphohydrolase	yes	no	0.890	0.950	0.475	5e-36
A3PMX6	162	RNA pyrophosphohydrolase	yes	no	0.849	0.907	0.483	1e-35
Q2RV14	165	RNA pyrophosphohydrolase	yes	no	0.826	0.866	0.493	4e-35
A4WWV6	162	RNA pyrophosphohydrolase	yes	no	0.855	0.913	0.467	4e-34
A8LKJ8	160	RNA pyrophosphohydrolase	yes	no	0.843	0.912	0.455	1e-32
Q5LMH8	161	RNA pyrophosphohydrolase	yes	no	0.855	0.919	0.448	3e-32

>sp|Q9C6Z2|NUD25_ARATH Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1

 Score =  303 bits (775), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 145/175 (82%), Positives = 159/175 (90%), Gaps = 2/175 (1%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+ LP GYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGEDPK AAMREL+EET
Sbjct: 1   MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDES--EINLAN 118
           G+VSAEI++EVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKW+L++L NDE   EINLAN
Sbjct: 61  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 120

Query: 119 GEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
            EAD EFAEWKWA PEEVVEQAVDYKRPTYEEV++TF  +LN+ G AAKCKSAKW
Sbjct: 121 NEADSEFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTFGSFLNDTGRAAKCKSAKW 175

Mediates the hydrolysis of diadenosine 5',5''-P(1)P(4) tetraphosphate (Ap(4)A), a signaling molecule involved in regulation of DNA replication and repair.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 7

>sp|Q9CAF2|NUD26_ARATH Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1

 Score =  216 bits (551), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+  P GYR NVGVCL+NS  +IF ASRL++P AWQMPQGGI++GEDP++A MREL+EET
Sbjct: 56  MESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEET 115

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEIN-LANG 119
           G+ SAEI+AE P+W+TYDFPP V+ K+   WG +W GQAQKWFL+K T  + EIN L +G
Sbjct: 116 GVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDG 175

Query: 120 EADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN 160
              PEF EW W SP++VVE AV++K+P Y+EVM  F  +L 
Sbjct: 176 TEKPEFGEWSWTSPDQVVENAVEFKKPVYKEVMSAFASHLQ 216

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A), diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A) and diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A) as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|Q9FNH4|NUD27_ARATH Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1

 Score =  202 bits (515), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 113/156 (72%), Gaps = 1/156 (0%)

Query: 5   PSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
           P GYR NVG+CL++   +IF AS++++P  WQMPQGG ++GED + AA RELREETG+ S
Sbjct: 59  PVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTS 118

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEIN-LANGEADP 123
           AE IAE+PNWLTYDFP  VK K+NR W   + GQAQKWFL K T  E EIN L +G A P
Sbjct: 119 AEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLGDGTAKP 178

Query: 124 EFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
           EF  W W  PE+V+E AV +KRP YE V++ F PY 
Sbjct: 179 EFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPYF 214

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|B9KN59|RPPH_RHOSK RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rppH PE=3 SV=1

 Score =  150 bits (378), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 8/162 (4%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREE 59
           +D L   YRP VG+ LIN +  IF   R++ P  AWQMPQGGI++GE P+ AA+REL EE
Sbjct: 5   IDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEE 64

Query: 60  TGIVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLA 117
           TGI +   E +A+ P+W+TYD PP +   + R+WGG++ GQ QKWFL +    + E+ + 
Sbjct: 65  TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEVGIG 121

Query: 118 NGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
              A  EF+ W+W   EE+V   V +KR  YEEV+ TFRP+L
Sbjct: 122 TDHA--EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain KD131 / KCTC 12085) (taxid: 557760)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q3IZC1|RPPH_RHOS4 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1

 Score =  150 bits (378), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 77/162 (47%), Positives = 106/162 (65%), Gaps = 8/162 (4%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREE 59
           +D L   YRP VG+ LIN +  IF   R++ P  AWQMPQGGI++GE P+ AA+REL EE
Sbjct: 5   IDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEE 64

Query: 60  TGIVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLA 117
           TGI +   E +A+ P+W+TYD PP +   + R+WGG++ GQ QKWFL +    + E+ + 
Sbjct: 65  TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDEEVGIG 121

Query: 118 NGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
              A  EF+ W+W   EE+V   V +KR  YEEV+ TFRP+L
Sbjct: 122 TDHA--EFSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A3PMX6|RPPH_RHOS1 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rppH PE=3 SV=1

 Score =  149 bits (375), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 103/155 (66%), Gaps = 8/155 (5%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
           YRP VG+ LIN +  IF   R++ P  AWQMPQGGI++GE P+ AA+REL EETGI +  
Sbjct: 12  YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAER 71

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
            E +A+ P+W+TYD PP +   + R+WGG++ GQ QKWFL +    + E+ +    A  E
Sbjct: 72  VEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWFLYRYLGTDDEVGIGTDHA--E 126

Query: 125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
           F+ W+W   EE+V   V +KR  YEEV+ TFRP+L
Sbjct: 127 FSCWRWIGAEEMVAAIVPFKRAVYEEVVATFRPHL 161

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) (taxid: 349101)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q2RV14|RPPH_RHORT RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rppH PE=3 SV=1

 Score =  147 bits (370), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 97/150 (64%), Gaps = 7/150 (4%)

Query: 3   GLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           GLP  YR  VG+ LIN+  Q+FVA RL+ P AWQMPQGGI+ GEDP+ AA RE+ EE G 
Sbjct: 11  GLP--YRQGVGIMLINARGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGT 68

Query: 63  VSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEAD 122
            +A ++ E   WL YD P  ++    RLWGG + GQ QKWF  + T  +++INLA   A 
Sbjct: 69  RNALLLGETAGWLGYDLPEELR---GRLWGGRFQGQRQKWFAFRFTGQDADINLAT--AH 123

Query: 123 PEFAEWKWASPEEVVEQAVDYKRPTYEEVM 152
           PEF  W+W   + +V   V +KRP YE+V+
Sbjct: 124 PEFDAWRWVDVDTLVALIVPFKRPVYEQVV 153

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A4WWV6|RPPH_RHOS5 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rppH PE=3 SV=1

 Score =  143 bits (361), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 100/156 (64%), Gaps = 8/156 (5%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
           YRP VG+ LIN +  IF   R++ P  AWQMPQGGI+  E P+ AA+REL+EETGI    
Sbjct: 12  YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDADEKPRQAALRELQEETGIPEDL 71

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
            E +A+ P W+TYD PP +   + R+WGG++ GQ QKWFL +    + +I +A   A  E
Sbjct: 72  VEFVAKAPEWVTYDLPPDL---LGRVWGGKYRGQRQKWFLFRYLGTDEQIGIATEHA--E 126

Query: 125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN 160
           F+ W+W   EE+V   V +KRP YE V+  FR +L+
Sbjct: 127 FSCWRWIGAEEMVASIVPFKRPVYERVVAMFREHLS 162

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) (taxid: 349102)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A8LKJ8|RPPH_DINSH RNA pyrophosphohydrolase OS=Dinoroseobacter shibae (strain DFL 12) GN=rppH PE=3 SV=1

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 98/156 (62%), Gaps = 10/156 (6%)

Query: 8   YRPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIV-- 63
           YR  VGV L +   ++F   R +  +P AWQMPQGGIEDGED + AA+REL EETG+   
Sbjct: 11  YRKCVGVVLWDGAGRVFTGQRYDSELP-AWQMPQGGIEDGEDARTAALRELVEETGVAVE 69

Query: 64  SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP 123
             E++AE P+W+ YD PP +   V R+W G + GQAQ+W LMK    +++IN+      P
Sbjct: 70  KVEVLAETPDWIKYDLPPEI---VPRIWKGRYKGQAQRWVLMKFLGSDADINIETKH--P 124

Query: 124 EFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
           EF+EW+W  P  V++  V +KR  YE+V   F  +L
Sbjct: 125 EFSEWRWLEPASVLDSIVPFKRDVYEQVFDAFSDWL 160

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Dinoroseobacter shibae (strain DFL 12) (taxid: 398580)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q5LMH8|RPPH_RUEPO RNA pyrophosphohydrolase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rppH PE=3 SV=1

 Score =  137 bits (345), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 97/156 (62%), Gaps = 8/156 (5%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
           YRP VGV L+N D  +FV  R++    AWQMPQGG+++ EDP  AA+REL EETG+ +  
Sbjct: 11  YRPCVGVVLMNGDGFVFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTADL 70

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
            E++AE   WL YD P  +   V R+W G + GQ QKW+L +    + +I+L  G   PE
Sbjct: 71  VEMVAETDGWLPYDLPHDL---VPRIWKGRYRGQEQKWYLFRFLGRDDQIDLETGH--PE 125

Query: 125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN 160
           F+ WKW  P+ +V + V +KR  YE V+  F P+L 
Sbjct: 126 FSRWKWQDPDRLVAEIVPFKRDVYERVVAAFAPHLG 161

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
224108323	173	predicted protein [Populus trichocarpa]	1.0	1.0	0.919	5e-90
224101843	173	predicted protein [Populus trichocarpa]	1.0	1.0	0.913	2e-89
255570126	173	(Di)nucleoside polyphosphate hydrolase,	1.0	1.0	0.901	2e-88
449467617	173	PREDICTED: nudix hydrolase 25-like [Cucu	1.0	1.0	0.867	3e-85
359472870	173	PREDICTED: nudix hydrolase 25-like [Viti	1.0	1.0	0.855	4e-85
351725143	173	uncharacterized protein LOC100306071 [Gl	1.0	1.0	0.855	2e-84
388520493	173	unknown [Lotus japonicus]	1.0	1.0	0.855	3e-84
356530740	173	PREDICTED: nudix hydrolase 25-like [Glyc	1.0	1.0	0.855	5e-84
357438681	173	Nudix hydrolase [Medicago truncatula] gi	1.0	1.0	0.855	4e-83
388501076	173	unknown [Medicago truncatula]	1.0	1.0	0.855	8e-83

>gi|224108323|ref|XP_002314805.1| predicted protein [Populus trichocarpa] gi|222863845|gb|EEF00976.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (858), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 159/173 (91%), Positives = 167/173 (96%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MDGLPSGYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGE+PK AA+REL EET
Sbjct: 1   MDGLPSGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELMEET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAE IAEVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKWFLM+LT DESEINLA+GE
Sbjct: 61  GIVSAETIAEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMRLTKDESEINLASGE 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           ADPEFAEWKWASPEEV+EQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKS+KW
Sbjct: 121 ADPEFAEWKWASPEEVIEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSSKW 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101843|ref|XP_002312442.1| predicted protein [Populus trichocarpa] gi|222852262|gb|EEE89809.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (854), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/173 (91%), Positives = 166/173 (95%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MDGLPSGYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGE+PK AA+REL EET
Sbjct: 1   MDGLPSGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELLEET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAEIIAEVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKWFLM+LT DESEINL +GE
Sbjct: 61  GIVSAEIIAEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMRLTKDESEINLGSGE 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           ADPEFAEWKW SPEEV+EQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKS+KW
Sbjct: 121 ADPEFAEWKWTSPEEVIEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSSKW 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570126|ref|XP_002526025.1| (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis] gi|223534672|gb|EEF36365.1| (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]

 Score =  330 bits (845), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/173 (90%), Positives = 167/173 (96%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MDGLP+GYRPNVGVCLINSD+QIFVASRLNVPGAWQMPQGGIED E+P+ AA+RELREET
Sbjct: 1   MDGLPAGYRPNVGVCLINSDNQIFVASRLNVPGAWQMPQGGIEDDEEPRSAAIRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAEII+EVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKWFLM+LT DESEINLANG 
Sbjct: 61  GIVSAEIISEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMRLTKDESEINLANGA 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           A+PEFAEWKWASPEEVVEQAVDYKRPTYEEV++TFRPYLNE GIAAKCKS+KW
Sbjct: 121 AEPEFAEWKWASPEEVVEQAVDYKRPTYEEVVKTFRPYLNETGIAAKCKSSKW 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467617|ref|XP_004151519.1| PREDICTED: nudix hydrolase 25-like [Cucumis sativus] gi|449494621|ref|XP_004159600.1| PREDICTED: nudix hydrolase 25-like [Cucumis sativus]

 Score =  319 bits (817), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/173 (86%), Positives = 162/173 (93%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MD LPSGYRPNVGVCLINSD Q+FVASRLNVPGAWQMPQGGIEDGEDPKLAA+RELR+ET
Sbjct: 1   MDSLPSGYRPNVGVCLINSDYQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAE++AEVP WLTYDFPPAVKTKVNRLWGG+WHGQAQKWFLM+LT D+SEINL N E
Sbjct: 61  GIVSAEMVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWFLMRLTKDDSEINLDNDE 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           AD EFAEWKWA+PEEVVEQAVDYKRPTYEEVM+TF PYLN N I+ KCKS+KW
Sbjct: 121 ADVEFAEWKWANPEEVVEQAVDYKRPTYEEVMKTFAPYLNGNKISTKCKSSKW 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472870|ref|XP_002284395.2| PREDICTED: nudix hydrolase 25-like [Vitis vinifera] gi|147845365|emb|CAN79048.1| hypothetical protein VITISV_004867 [Vitis vinifera] gi|297737699|emb|CBI26900.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 148/173 (85%), Positives = 164/173 (94%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+GLPSGYRPNVGVCLINSD Q+FVASRLNVPGAWQMPQGGIEDGE+PK AAMRELREET
Sbjct: 1   MEGLPSGYRPNVGVCLINSDDQVFVASRLNVPGAWQMPQGGIEDGEEPKSAAMRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAEIIAEVPNWLTYDFPPAVK KVNRLW GEWHGQAQKWFLM+LT D+SE+NLA+GE
Sbjct: 61  GIVSAEIIAEVPNWLTYDFPPAVKAKVNRLWRGEWHGQAQKWFLMRLTKDDSEVNLASGE 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           A+PEF+EWKW++PEEV+EQAVDYKRPTYEEVM+TFRPY + N  +AKC+SAKW
Sbjct: 121 AEPEFSEWKWSNPEEVIEQAVDYKRPTYEEVMKTFRPYFSGNANSAKCRSAKW 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725143|ref|NP_001237082.1| uncharacterized protein LOC100306071 [Glycine max] gi|255627447|gb|ACU14068.1| unknown [Glycine max]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/173 (85%), Positives = 160/173 (92%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+GLP GYRPNVGVCLINSD QIFVASRLNVPGAWQMPQGGIEDGE+PK AA+RELREET
Sbjct: 1   MEGLPQGYRPNVGVCLINSDDQIFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAEIIAEV  WLTYDFPPAVK KVNRLWGGEWHGQAQKWFLM+LT D+SE+NL NGE
Sbjct: 61  GIVSAEIIAEVQKWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMRLTKDDSEVNLTNGE 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           A+PEFAEWKWA PEEV+EQAVDYKRPTYEEV+RTF+PY   +GI+AKCKS KW
Sbjct: 121 AEPEFAEWKWADPEEVIEQAVDYKRPTYEEVIRTFKPYFQGSGISAKCKSTKW 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520493|gb|AFK48308.1| unknown [Lotus japonicus]

 Score =  315 bits (808), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 148/173 (85%), Positives = 160/173 (92%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+GLP GYRPNVGVCLINS+ QIFVASRLNVPGAWQMPQGGIEDGEDPK AA+RELREET
Sbjct: 1   MEGLPQGYRPNVGVCLINSNDQIFVASRLNVPGAWQMPQGGIEDGEDPKSAAIRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAEIIAEV NWLTYDFPPAVK KVNRLWGGEWHGQAQKWFLM+LT D++E+NLANGE
Sbjct: 61  GIVSAEIIAEVQNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMRLTKDDNEVNLANGE 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           A+ EFAEWKW  PEEV+EQAVDYKRPTYEEV+RTF+PYL  N I+AKCKS KW
Sbjct: 121 AETEFAEWKWTDPEEVIEQAVDYKRPTYEEVIRTFKPYLQGNSISAKCKSTKW 173

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530740|ref|XP_003533938.1| PREDICTED: nudix hydrolase 25-like [Glycine max]

 Score =  315 bits (806), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 148/173 (85%), Positives = 160/173 (92%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+GLP GYRPNVGVCLINSD QIFVASRLNVPGAWQMPQGGIEDGE+PK AA+RELREET
Sbjct: 1   MEGLPQGYRPNVGVCLINSDDQIFVASRLNVPGAWQMPQGGIEDGEEPKSAAVRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAEIIAEV  WLTYDFPPAVK KVNRLWGGEWHGQAQKWFLM+LT D+SE+NLANGE
Sbjct: 61  GIVSAEIIAEVQKWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMRLTKDDSEVNLANGE 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           A+ EFAEWKWA PEEV+EQAVDYKRPTYEEV+RTF+PY   +GI+AKCKS KW
Sbjct: 121 AEREFAEWKWADPEEVIEQAVDYKRPTYEEVIRTFKPYFQGSGISAKCKSTKW 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438681|ref|XP_003589617.1| Nudix hydrolase [Medicago truncatula] gi|355478665|gb|AES59868.1| Nudix hydrolase [Medicago truncatula]

 Score =  312 bits (799), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 148/173 (85%), Positives = 156/173 (90%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+ LP GYRPNVGVCLINSD QIFVASRLNVPGAWQMPQGGIEDGE+PK AA+RELREET
Sbjct: 1   MENLPQGYRPNVGVCLINSDDQIFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAEIIAEV  WLTYDFPPAVK KVNRLWGGEWHGQAQKWFLMKL  D+ EINLA GE
Sbjct: 61  GIVSAEIIAEVDKWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMKLKKDDGEINLATGE 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           ADPEFAEWKWASPEEV+EQAVDYKRPTYEEV+ TF+PY   N I+AKCKS KW
Sbjct: 121 ADPEFAEWKWASPEEVIEQAVDYKRPTYEEVVTTFKPYFQGNAISAKCKSTKW 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501076|gb|AFK38604.1| unknown [Medicago truncatula]

 Score =  311 bits (796), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 148/173 (85%), Positives = 155/173 (89%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M  LP GYRPNVGVCLINSD QIFVASRLNVPGAWQMPQGGIEDGE+PK AA+RELREET
Sbjct: 1   MGNLPQGYRPNVGVCLINSDDQIFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           GIVSAEIIAEV  WLTYDFPPAVK KVNRLWGGEWHGQAQKWFLMKL  D+ EINLA GE
Sbjct: 61  GIVSAEIIAEVDKWLTYDFPPAVKAKVNRLWGGEWHGQAQKWFLMKLKKDDGEINLATGE 120

Query: 121 ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
           ADPEFAEWKWASPEEV+EQAVDYKRPTYEEV+ TF+PY   N I+AKCKS KW
Sbjct: 121 ADPEFAEWKWASPEEVIEQAVDYKRPTYEEVVTTFKPYFQGNAISAKCKSTKW 173

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2202487	175	NUDX25 "AT1G30110" [Arabidopsi	1.0	0.988	0.828	7.6e-80
TAIR|locus:2075840	216	NUDX26 "AT3G10620" [Arabidopsi	0.919	0.736	0.606	1.3e-54
TAIR|locus:2164220	227	NUDX27 "AT5G06340" [Arabidopsi	0.890	0.678	0.593	1.5e-49
TIGR_CMR|SPO_3585	161	SPO_3585 "hydrolase, NUDIX fam	0.849	0.913	0.451	1.2e-33
UNIPROTKB|Q9KU53	172	rppH "RNA pyrophosphohydrolase	0.843	0.848	0.427	1.2e-26
TIGR_CMR|VC_0671	172	VC_0671 "MutT/nudix family pro	0.843	0.848	0.427	1.2e-26
UNIPROTKB|Q47Y27	171	rppH "RNA pyrophosphohydrolase	0.832	0.842	0.403	3.3e-24
TIGR_CMR|CPS_3625	171	CPS_3625 "(di)nucleoside polyp	0.832	0.842	0.403	3.3e-24
UNIPROTKB|P0A776	176	rppH [Escherichia coli K-12 (t	0.820	0.806	0.411	5.3e-24
TIGR_CMR|CJE_0684	156	CJE_0684 "(di)nucleoside polyp	0.809	0.897	0.381	4.8e-23

TAIR|locus:2202487 NUDX25 "AT1G30110" [Arabidopsis thaliana (taxid:3702)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 145/175 (82%), Positives = 159/175 (90%)

Query:     1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
             M+ LP GYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGEDPK AAMREL+EET
Sbjct:     1 MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query:    61 GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESE--INLAN 118
             G+VSAEI++EVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKW+L++L NDE E  INLAN
Sbjct:    61 GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWYLVRLRNDEDEKEINLAN 120

Query:   119 GEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSAKW 173
              EAD EFAEWKWA PEEVVEQAVDYKRPTYEEV++TF  +LN+ G AAKCKSAKW
Sbjct:   121 NEADSEFAEWKWAKPEEVVEQAVDYKRPTYEEVIKTFGSFLNDTGRAAKCKSAKW 175

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0015967 "diadenosine tetraphosphate catabolic process" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

TAIR|locus:2075840 NUDX26 "AT3G10620" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 97/160 (60%), Positives = 124/160 (77%)

Query:     1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
             M+  P GYR NVGVCL+NS  +IF ASRL++P AWQMPQGGI++GEDP++A MREL+EET
Sbjct:    56 MESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEET 115

Query:    61 GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINL-ANG 119
             G+ SAEI+AE P+W+TYDFPP V+ K+   WG +W GQAQKWFL+K T  + EINL  +G
Sbjct:   116 GVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWFLLKFTGKDEEINLLGDG 175

Query:   120 EADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
                PEF EW W SP++VVE AV++K+P Y+EVM  F  +L
Sbjct:   176 TEKPEFGEWSWTSPDQVVENAVEFKKPVYKEVMSAFASHL 215

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

TAIR|locus:2164220 NUDX27 "AT5G06340" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 92/155 (59%), Positives = 113/155 (72%)

Query:     5 PSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
             P GYR NVG+CL++   +IF AS++++P  WQMPQGG ++GED + AA RELREETG+ S
Sbjct:    59 PVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTS 118

Query:    65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINL-ANGEADP 123
             AE IAE+PNWLTYDFP  VK K+NR W   + GQAQKWFL K T  E EINL  +G A P
Sbjct:   119 AEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLGDGTAKP 178

Query:   124 EFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY 158
             EF  W W  PE+V+E AV +KRP YE V++ F PY
Sbjct:   179 EFKVWSWMLPEQVIEHAVYFKRPVYEHVIKQFNPY 213

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TIGR_CMR|SPO_3585 SPO_3585 "hydrolase, NUDIX family, NudH subfamily" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 70/155 (45%), Positives = 97/155 (62%)

Query:     8 YRPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
             YRP VGV L+N D  +FV  R++    AWQMPQGG+++ EDP  AA+REL EETG+ +  
Sbjct:    11 YRPCVGVVLMNGDGFVFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTADL 70

Query:    65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
              E++AE   WL YD P  +   V R+W G + GQ QKW+L +    + +I+L  G   PE
Sbjct:    71 VEMVAETDGWLPYDLPHDL---VPRIWKGRYRGQEQKWYLFRFLGRDDQIDLETGH--PE 125

Query:   125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
             F+ WKW  P+ +V + V +KR  YE V+  F P+L
Sbjct:   126 FSRWKWQDPDRLVAEIVPFKRDVYERVVAAFAPHL 160

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

UNIPROTKB|Q9KU53 rppH "RNA pyrophosphohydrolase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 68/159 (42%), Positives = 89/159 (55%)

Query:     1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
             +DG   GYR NVG+ + N+  Q+F A R     +WQ PQGGI+DGE P+ A  REL EE 
Sbjct:     2 IDG--DGYRLNVGIVICNNHGQVFWAKRYG-QHSWQFPQGGIDDGESPEQAMFRELYEEV 58

Query:    61 GIVSAEI--IAEVPNWLTYDFPPAVKTKVNRLWGGE--WHGQAQKWFLMKLTNDESEINL 116
             G+   ++  IA   +WL Y  P   K  V   W  +    GQ QKWFL++L  DES+IN+
Sbjct:    59 GLTKKDVKVIATSRHWLRYKLP---KRLVR--WDSQPVCIGQKQKWFLLRLECDESKINM 113

Query:   117 ANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
               G + PEF  W+W S    V Q V +KR  Y   M+ F
Sbjct:   114 QRGSS-PEFDGWRWVSYWYPVRQVVSFKRDVYRRAMKEF 151

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|VC_0671 VC_0671 "MutT/nudix family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 68/159 (42%), Positives = 89/159 (55%)

Query:     1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
             +DG   GYR NVG+ + N+  Q+F A R     +WQ PQGGI+DGE P+ A  REL EE 
Sbjct:     2 IDG--DGYRLNVGIVICNNHGQVFWAKRYG-QHSWQFPQGGIDDGESPEQAMFRELYEEV 58

Query:    61 GIVSAEI--IAEVPNWLTYDFPPAVKTKVNRLWGGE--WHGQAQKWFLMKLTNDESEINL 116
             G+   ++  IA   +WL Y  P   K  V   W  +    GQ QKWFL++L  DES+IN+
Sbjct:    59 GLTKKDVKVIATSRHWLRYKLP---KRLVR--WDSQPVCIGQKQKWFLLRLECDESKINM 113

Query:   117 ANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
               G + PEF  W+W S    V Q V +KR  Y   M+ F
Sbjct:   114 QRGSS-PEFDGWRWVSYWYPVRQVVSFKRDVYRRAMKEF 151

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

UNIPROTKB|Q47Y27 rppH "RNA pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/151 (40%), Positives = 83/151 (54%)

Query:     7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
             GYR NVG+ +IN   Q+F A R     +WQ PQGG+++GE  +    REL EE G+    
Sbjct:     6 GYRANVGIVIINDMGQVFWARRYG-QHSWQYPQGGVDEGETAEQTMYRELHEEVGLKPEH 64

Query:    65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
              +I+A   +WL Y  P   K  +         GQ QKWFL+KLT  ES ++L +  + PE
Sbjct:    65 VKIVASTKHWLKYKLP---KRYIRHDSKPVCIGQKQKWFLLKLTAAESSVDLLHS-SHPE 120

Query:   125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
             F +W+W S    V Q V +KR  Y  VM+ F
Sbjct:   121 FDDWRWVSYWYPVRQVVSFKRDVYRMVMKEF 151

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

TIGR_CMR|CPS_3625 CPS_3625 "(di)nucleoside polyphosphate hydrolase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/151 (40%), Positives = 83/151 (54%)

Query:     7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
             GYR NVG+ +IN   Q+F A R     +WQ PQGG+++GE  +    REL EE G+    
Sbjct:     6 GYRANVGIVIINDMGQVFWARRYG-QHSWQYPQGGVDEGETAEQTMYRELHEEVGLKPEH 64

Query:    65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
              +I+A   +WL Y  P   K  +         GQ QKWFL+KLT  ES ++L +  + PE
Sbjct:    65 VKIVASTKHWLKYKLP---KRYIRHDSKPVCIGQKQKWFLLKLTAAESSVDLLHS-SHPE 120

Query:   125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
             F +W+W S    V Q V +KR  Y  VM+ F
Sbjct:   121 FDDWRWVSYWYPVRQVVSFKRDVYRMVMKEF 151

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

UNIPROTKB|P0A776 rppH [Escherichia coli K-12 (taxid:83333)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 63/153 (41%), Positives = 81/153 (52%)

Query:     7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
             GYRPNVG+ + N   Q+  A R     +WQ PQGGI  GE  + A  REL EE G+   +
Sbjct:     6 GYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKD 64

Query:    67 --IIAEVPNWLTYDFPPAVKTKVNRLWGGE--WHGQAQKWFLMKLTNDESEINLANGEAD 122
               I+A   NWL Y  P   K  V   W  +    GQ QKWFL++L + ++EIN+      
Sbjct:    65 VRILASTRNWLRYKLP---KRLVR--WDTKPVCIGQKQKWFLLQLVSGDAEINMQTSST- 118

Query:   123 PEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
             PEF  W+W S    V Q V +KR  Y  VM+ F
Sbjct:   119 PEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEF 151

GO:0050779 "RNA destabilization" evidence=IMP

GO:0034353 "RNA pyrophosphohydrolase activity" evidence=IDA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IMP

TIGR_CMR|CJE_0684 CJE_0684 "(di)nucleoside polyphosphate hydrolase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 58/152 (38%), Positives = 92/152 (60%)

Query:     8 YRPNVGVCLINS----DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
             YRPNV   +++S    + +IF+A R ++   WQ PQGGI+ GE  K A  REL+EE G  
Sbjct:     7 YRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGGIDKGESVKNALFRELKEEIGTD 66

Query:    64 SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP 123
               EIIAE P WL+YDFP  +   V +++   + GQ QK+FL++L +  + IN+      P
Sbjct:    67 EVEIIAEYPEWLSYDFPSKI---VKKMY--PYDGQIQKYFLVRLKHGAT-INI--NTKHP 118

Query:   124 EFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
             EF ++++ S +++ E    +K+  Y +V++ F
Sbjct:   119 EFDDYQFVSVKQIFEMINHFKKNIYVKVIKYF 150

GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8GW83	RPPH_RICB8	3, ., 6, ., 1, ., -	0.4362	0.8265	0.8881	yes	no
A5E954	RPPH_BRASB	3, ., 6, ., 1, ., -	0.4076	0.8381	0.8630	yes	no
B8H5H3	RPPH_CAUCN	3, ., 6, ., 1, ., -	0.4258	0.8439	0.8488	yes	no
A5FWY8	RPPH_ACICJ	3, ., 6, ., 1, ., -	0.4125	0.8728	0.9207	yes	no
Q13DN7	RPPH_RHOPS	3, ., 6, ., 1, ., -	0.4322	0.8381	0.8682	yes	no
B3CM46	RPPH_WOLPP	3, ., 6, ., 1, ., -	0.3986	0.8323	0.8888	yes	no
A4WWV6	RPPH_RHOS5	3, ., 6, ., 1, ., -	0.4679	0.8554	0.9135	yes	no
Q8YJ71	RPPH_BRUME	3, ., 6, ., 1, ., -	0.4088	0.8439	0.8202	yes	no
Q21CZ3	RPPH_RHOPB	3, ., 6, ., 1, ., -	0.4074	0.8612	0.8514	yes	no
A9M874	RPPH_BRUC2	3, ., 6, ., 1, ., -	0.4088	0.8439	0.8202	yes	no
Q16BL5	RPPH_ROSDO	3, ., 6, ., 1, ., -	0.4709	0.8497	0.9187	yes	no
A9WWW1	RPPH_BRUSI	3, ., 6, ., 1, ., -	0.4088	0.8439	0.8202	yes	no
A5VSH6	RPPH_BRUO2	3, ., 6, ., 1, ., -	0.4088	0.8439	0.8202	yes	no
Q4FP40	RPPH_PELUB	3, ., 6, ., 1, ., -	0.3986	0.8497	0.9303	yes	no
Q92IV0	RPPH_RICCN	3, ., 6, ., 1, ., -	0.4228	0.8265	0.8881	yes	no
Q5GT39	RPPH_WOLTR	3, ., 6, ., 1, ., -	0.4189	0.8323	0.8944	yes	no
Q89X78	RPPH_BRAJA	3, ., 6, ., 1, ., -	0.4230	0.8381	0.8682	yes	no
Q68XD3	RPPH_RICTY	3, ., 6, ., 1, ., -	0.4295	0.8265	0.8881	yes	no
B0BWQ7	RPPH_RICRO	3, ., 6, ., 1, ., -	0.4295	0.8265	0.8881	yes	no
A9H3A6	RPPH_GLUDA	3, ., 6, ., 1, ., -	0.4166	0.8323	0.8622	yes	no
Q3SVH3	RPPH_NITWN	3, ., 6, ., 1, ., -	0.4409	0.8612	0.8764	yes	no
A8GMN4	RPPH_RICAH	3, ., 6, ., 1, ., -	0.4117	0.8497	0.9130	yes	no
Q2N9Y3	RPPH_ERYLH	3, ., 6, ., 1, ., -	0.4358	0.8554	0.9024	yes	no
C4K0V5	RPPH_RICPU	3, ., 6, ., 1, ., -	0.4295	0.8265	0.8881	yes	no
Q9A2W6	RPPH_CAUCR	3, ., 6, ., 1, ., -	0.4258	0.8439	0.8488	yes	no
A8GRA7	RPPH_RICRS	3, ., 6, ., 1, ., -	0.4295	0.8265	0.8881	yes	no
A8HRT0	RPPH_AZOC5	3, ., 6, ., 1, ., -	0.4058	0.9017	0.9285	yes	no
A8LKJ8	RPPH_DINSH	3, ., 6, ., 1, ., -	0.4551	0.8439	0.9125	yes	no
Q3IZC1	RPPH_RHOS4	3, ., 6, ., 1, ., -	0.4753	0.8901	0.9506	yes	no
A8EXY5	RPPH_RICCK	3, ., 6, ., 1, ., -	0.4295	0.8265	0.8881	yes	no
A3PMX6	RPPH_RHOS1	3, ., 6, ., 1, ., -	0.4838	0.8497	0.9074	yes	no
Q2G7H8	RPPH_NOVAD	3, ., 6, ., 1, ., -	0.4285	0.8728	0.9378	yes	no
P61786	RPPH_RHOPA	3, ., 6, ., 1, ., -	0.4358	0.8381	0.8630	yes	no
P61787	RPPH_WOLPM	3, ., 6, ., 1, ., -	0.3584	0.8959	0.9567	yes	no
Q5LMH8	RPPH_RUEPO	3, ., 6, ., 1, ., -	0.4487	0.8554	0.9192	yes	no
A4YKE4	RPPH_BRASO	3, ., 6, ., 1, ., -	0.4140	0.8381	0.8630	yes	no
Q9ZDT9	RPPH_RICPR	3, ., 6, ., 1, ., -	0.4228	0.8265	0.8881	yes	no
Q9C6Z2	NUD25_ARATH	3, ., 6, ., 1, ., 1, 7	0.8285	1.0	0.9885	yes	no
Q8FYM9	RPPH_BRUSU	3, ., 6, ., 1, ., -	0.4088	0.8439	0.8202	yes	no
Q1RHV9	RPPH_RICBR	3, ., 6, ., 1, ., -	0.4362	0.8265	0.8881	yes	no
Q5FU29	RPPH_GLUOX	3, ., 6, ., 1, ., -	0.4246	0.8150	0.8294	yes	no
C3PMT3	RPPH_RICAE	3, ., 6, ., 1, ., -	0.4295	0.8265	0.8881	yes	no
Q2RV14	RPPH_RHORT	3, ., 6, ., 1, ., -	0.4933	0.8265	0.8666	yes	no
B9KN59	RPPH_RHOSK	3, ., 6, ., 1, ., -	0.4753	0.8901	0.9506	yes	no
C0R4X8	RPPH_WOLWR	3, ., 6, ., 1, ., -	0.3584	0.8959	0.9567	yes	no
A1B502	RPPH_PARDP	3, ., 6, ., 1, ., -	0.4437	0.8670	0.9202	yes	no
Q4UKM5	RPPH_RICFE	3, ., 6, ., 1, ., -	0.4295	0.8265	0.8881	yes	no
A6Q441	RPPH_NITSB	3, ., 6, ., 1, ., -	0.4117	0.8150	0.9096	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.998
3rd Layer	3.6.1.17	0.994
3rd Layer	3.6.1.52	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00101050 hypothetical protein (174 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	9e-72
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	6e-66
pfam00293	133	pfam00293, NUDIX, NUDIX domain	3e-20
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	4e-15
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	1e-14
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	2e-11
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	9e-09
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	9e-09
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	1e-08
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	1e-08
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	2e-08
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	4e-08
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	1e-07
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	2e-07
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	2e-07
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	4e-07
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	5e-07
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	7e-07
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	1e-06
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	1e-06
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	2e-06
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	2e-06
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	3e-06
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	4e-06
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	4e-06
TIGR00586	128	TIGR00586, mutt, mutator mutT protein	7e-06
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	9e-06
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	1e-05
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	1e-05
cd04695	131	cd04695, Nudix_Hydrolase_36, Members of the Nudix	2e-05
cd04662	126	cd04662, Nudix_Hydrolase_5, Members of the Nudix h	3e-05
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	4e-05
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	6e-05
COG4119	161	COG4119, COG4119, Predicted NTP pyrophosphohydrola	7e-05
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	7e-05
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	9e-05
PRK10546	135	PRK10546, PRK10546, pyrimidine (deoxy)nucleoside t	1e-04
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	1e-04
PRK15472	141	PRK15472, PRK15472, nucleoside triphosphatase NudI	2e-04
cd04663	126	cd04663, Nudix_Hydrolase_6, Members of the Nudix h	2e-04
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	3e-04
TIGR02705	156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	5e-04
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	6e-04
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	7e-04
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	8e-04
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	0.001
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	0.002
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	0.003
PRK11762	185	PRK11762, nudE, adenosine nucleotide hydrolase Nud	0.003
cd04693	127	cd04693, Nudix_Hydrolase_34, Members of the Nudix	0.003

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score =  212 bits (543), Expect = 9e-72
 Identities = 84/151 (55%), Positives = 107/151 (70%), Gaps = 6/151 (3%)

Query: 7   GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI--VS 64
            YRPNVGV L N D ++FV  R++ PGAWQ PQGGI++GEDP+ AA+REL EETG+   S
Sbjct: 1   PYRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDS 60

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
            EIIAE+P+WL YD PP +K K   +WGG + GQ QKWFL + T D+SEI+L N    PE
Sbjct: 61  VEIIAEIPDWLRYDLPPELKLK---IWGGRYRGQEQKWFLFRFTGDDSEIDL-NAPEHPE 116

Query: 125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
           F EW+W   EE+ +  V +KRP YE V++ F
Sbjct: 117 FDEWRWVPLEELPDLIVPFKRPVYEAVLKEF 147

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score =  198 bits (505), Expect = 6e-66
 Identities = 69/155 (44%), Positives = 92/155 (59%), Gaps = 7/155 (4%)

Query: 7   GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
           GYRPNVG+ L+N   Q+F   R+    +WQ PQGGI+ GE P+ A  REL EE G+    
Sbjct: 6   GYRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPED 65

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
            EI+AE  +WL YD P  +  +      G + GQ QKWFL++LT D+SEINL N  + PE
Sbjct: 66  VEILAETRDWLRYDLPKRLVRRSK----GVYRGQKQKWFLLRLTGDDSEINL-NTTSHPE 120

Query: 125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
           F  W+W S    ++Q V +KR  Y  V++ F   L
Sbjct: 121 FDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARLL 155

Length = 156

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 81.0 bits (200), Expect = 3e-20
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)

Query: 8   YRPNVGVCLINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
            R  VGV L+N D ++ +  R      PG W++P G +E GE P+ AA+REL EETG+  
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRV 60

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
              +  +   L Y  P                G+    FL +L   E E        + E
Sbjct: 61  L--LLLLLGVLEYPAPGRDG------------GEHVHVFLAELLGGEPEPQP----NEDE 102

Query: 125 FAEWKWASPEEVVEQAVDYKRP 146
            +E +W   EE++E  +  +  
Sbjct: 103 VSEVRWVPLEELLELLLAGEIR 124

Length = 133

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 68.7 bits (167), Expect = 4e-15
 Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 14/158 (8%)

Query: 6   SGYRPNVGVCLINSDS--QIFVASRLNVPGAWQMPQGGIEDGEDP-KLAAMRELREETGI 62
              R      L+  D   ++ +A R +  G W++P G +E GE+  + AA REL EETG+
Sbjct: 7   RKVRDVAVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGL 66

Query: 63  VSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEAD 122
                + +    L  +FPP+         G    G+  + F +   +D   + +    A 
Sbjct: 67  R----VKDERLELLGEFPPSPGD------GSSVGGREHRVFFVAEVDDSLAVAIEGLSAP 116

Query: 123 -PEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
             E  + +W   +E+    +   +   +          
Sbjct: 117 SEELEDLEWVPLDELAALVLAEDQVKRDAKKALLLLLF 154

Length = 161

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 20/140 (14%)

Query: 10  PNVGVCLINSDSQIFVASR-LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
             VG  +++ D ++ +  R  +  G W++P GG+E GE  + AA+RE+REETG+   ++ 
Sbjct: 1   VAVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGL---DVD 57

Query: 69  AEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEW 128
                 +     P            E        FL +L   E            E +E 
Sbjct: 58  VLRLLGVYEVESPD-----------EGEHAVVFVFLARLVGGE-----PTLLPPDEISEV 101

Query: 129 KWASPEEVVEQAVDYKRPTY 148
           +W + +E+   A+       
Sbjct: 102 RWVTLDELPALALSPALRPA 121

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 20/110 (18%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGIV--SAEIIAEVPNWLTYDFPPAVKTKVNR 89
            G WQ   GGIEDGE P  AA RE+ EETG+      ++    +    +F         R
Sbjct: 27  AGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN-----GR 81

Query: 90  LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ 139
           +W           F   L   ++ + L + E D     ++W  PEE    
Sbjct: 82  VWTEH-------PFAFHLP-SDAVVTL-DWEHD----AFEWVPPEEAAAL 118

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 50.8 bits (122), Expect = 9e-09
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 18 NSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNW 74
          N +++IF+  R    ++ G W+ P G IE GE P+ A +REL+EE GI      A +   
Sbjct: 13 NPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQH--ATLFEK 70

Query: 75 LTYDFP 80
          L Y+FP
Sbjct: 71 LEYEFP 76

Length = 129

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 50.7 bits (122), Expect = 9e-09
 Identities = 36/125 (28%), Positives = 52/125 (41%), Gaps = 23/125 (18%)

Query: 35  WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGE 94
           W +P+G +E GE P  AA+RE+ EETGI  AE+   +   + Y F  + K     +    
Sbjct: 29  WSLPKGKLEPGETPPEAAVREVEEETGI-RAEVGDPLGT-IRYWFSSSGKRVHKTV---- 82

Query: 95  WHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRT 154
            H     W+LM+    E          D E  E +W  P+E  +      R +Y      
Sbjct: 83  -H-----WWLMRALGGEFTPQP-----DEEVDEVRWLPPDEARD------RLSYPNDREL 125

Query: 155 FRPYL 159
            R  L
Sbjct: 126 LRAAL 130

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 28/127 (22%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT--KVNR 89
            G W  P+G +E GED   AA+RE  EETGI +AE +  V           V+   K   
Sbjct: 26  YGHWDFPKGHVEPGEDDLEAALRETEEETGI-TAEQLFIVLG-FKETLNYQVRGKLKTVT 83

Query: 90  LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYE 149
            +            L +L  D  E+ L+      E  +++W   EE ++        TYE
Sbjct: 84  YF------------LAELRPDV-EVKLS-----EEHQDYRWLPYEEALKLL------TYE 119

Query: 150 EVMRTFR 156
           ++     
Sbjct: 120 DLKAVLD 126

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 15 CLINSDSQIFVA--SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
           +I  D ++ +   +     G W +P GGIE GE P+ A  RE+ EETG ++ EI   +
Sbjct: 5  AVIPRDGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETG-LTVEIGRRL 62

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 9  RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           P V   + + + ++ +  R +  G W +P G +E GE P   A+RE+REETG+
Sbjct: 2  LPGVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGL 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 49.4 bits (119), Expect = 4e-08
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
           ++P G I+ GEDP+ AA REL EETG  + ++ 
Sbjct: 31 LELPAGLIDPGEDPEEAARRELEEETGYEAGDLE 64

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 24  FVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAV 83
                   P  W  P GG+E GE P+ AA RELREETGI  A++            PP  
Sbjct: 19  GDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLG-----------PPVW 67

Query: 84  KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE---FAEWKWASPEEVVE 138
           +      + G    Q +++FL +    E       G    E      W+W +  E+  
Sbjct: 68  RRDAAFTFLGVDGRQEERFFLARTPRTEPS---PAGWTALERRSILGWRWWTRAELAA 122

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 13 GVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          G  ++N  + + +      P  G W +P G +EDGE P+ AA+RE  EETG+
Sbjct: 17 GAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGL 68

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 33  GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 92
           G+W  P G I+  E    AA+RELREETGI    +       +  D  P +     R   
Sbjct: 26  GSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPL-SVLVDLDVHP-IDGHPKRGVP 83

Query: 93  GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVM 152
           G  H   +  FL     D+      + E+D      +W   +E+    +       E+V 
Sbjct: 84  GHLHLDLR--FLAVAPADDVAP-PKSDESD----AVRWFPLDELASLELP------EDVR 130

Query: 153 R 153
           R
Sbjct: 131 R 131

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 34 AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
           W +P GG+E GE    AA REL EE GI  A +  
Sbjct: 24 GWYLPGGGLERGETFAEAARRELLEELGIRLAVVAE 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 9  RPNVGVCLINSDS-QIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
           P V V  +   + +I +  R N PGA  W +P G +E GE  + AA REL+EETG+
Sbjct: 8  TPLVAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGL 64

Length = 145

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 20 DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAE 70
          D  + +  R + P  WQ   G +E+GE P   A+RE++EETGI   +++AE
Sbjct: 18 DLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGI---DVLAE 65

Length = 148

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 22/106 (20%)

Query: 12  VGVCLINSDSQIFVASRL---NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV--SAE 66
             + +I+ D +I +A R    ++ G W+ P G +E GE P+ A +RELREE GI     E
Sbjct: 5   AAI-IIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGE 63

Query: 67  IIAEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKWF 103
           ++A V     +D+P     +V        LW GE      Q  +W 
Sbjct: 64  LLATV----EHDYP---DKRVTLHVFLVELWSGEPQLLEHQELRWV 102

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 12 VGVCLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          VG  ++N  +++ V    N  P  W++P G ++ GED    A+RE+ EETGI
Sbjct: 5  VGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGI 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 27/109 (24%), Positives = 37/109 (33%), Gaps = 25/109 (22%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNW-LTYDF-PPAVKTKVNR 89
           PG W +P G  E GE P    +REL EE G+    +      W   Y    P     V  
Sbjct: 28  PGHWDLPGGHREGGETPLECVLRELLEEIGL---TLPESRIPWFRVYPSASPPGTEHV-- 82

Query: 90  LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVE 138
                        F++ LT  E  I   +     E    +  + EE + 
Sbjct: 83  -------------FVVPLTAREDAILFGD-----EGQALRLMTVEEFLA 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 10 PNVGVCLINSDSQIFV-----ASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
            V   ++    +I +       R   PG W++P G +E+GE  + A  RE+ EETG+
Sbjct: 2  VAVAALIVKDVGRILILKRSKDERTA-PGKWELPGGKVEEGETFEEALKREVYEETGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 15 CLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           L+  D ++ +  R N     G W +P G +E GED   AA+RE REE G+
Sbjct: 5  VLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGV 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
            W +P G IE GE P  AA REL+EETG+   +
Sbjct: 21 SRWALPGGKIEPGETPLQAARRELQEETGLQGLD 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 7  GYRP----NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          G+RP      GV L+N   ++ +  R +  G W +P G +E GE  +  A REL+EETG+
Sbjct: 1  GHRPLILVGAGVILLNEQGEVLLQKRSD-TGDWGLPGGAMELGESLEETARRELKEETGL 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|200031 TIGR00586, mutt, mutator mutT protein

 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 12  VGVCLINSDSQIFVASRL---NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
               + N + +I +  R          + P G  E GE P+ A +REL EE GI      
Sbjct: 7   AVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSE 66

Query: 69  AEVPNWLTYDFPPAVKTK----VNRLWGGEWHGQAQK--WFLMKLTNDESEINLANGE 120
            E    L Y+F P   T     + R  GG    + Q   W+++     +     AN  
Sbjct: 67  FEK---LEYEFYPRHITLWFWLLERWEGGPPGKEGQPEEWWVLVGLLADDFFPAANPV 121

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Lowering the threshold picks up members of MutT superfamily well [DNA metabolism, DNA replication, recombination, and repair]. Length = 128

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 12 VGV-CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
          V V  ++    ++ +  R N P  G W  P G +E GE  + AA+REL EETG+ 
Sbjct: 1  VAVGAVVFRGGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLE 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
          G ++ P GG+E GED     +REL+EETG  +  +I
Sbjct: 22 GDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVI 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 16/103 (15%)

Query: 12  VGVCLINSDSQIFVASR-LNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
            GV + ++D +I +A R       G W+ P G +E GE  + A  REL+EE GI   E+ 
Sbjct: 9   AGV-IRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGI---EVT 64

Query: 69  AEVPNWLTY--DFPPA-VKTKVNRL--WGGEWHG---QAQKWF 103
           A  P  +T   D+P   V+  V R+  W GE HG   Q   W 
Sbjct: 65  AARP-LITVRHDYPDKRVRLDVRRVTAWQGEPHGREGQPLAWV 106

Length = 312

>gnl|CDD|240051 cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 32 PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
           G W    GG+E GE    AA+REL+EETGI   E+
Sbjct: 26 GGFWCHVAGGVEAGETAWQAALRELKEETGISLPEL 61

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240020 cd04662, Nudix_Hydrolase_5, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI-VSAEII 68
          GAW +P+G   +GEDP LAA RE  EETG  V    I
Sbjct: 33 GAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFI 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 12 VGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI-- 67
          VGV ++N D ++ V  R   P  G   +P G ++ GE  + A +RE+REETG+   E+  
Sbjct: 4  VGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY 63

Query: 68 IAEVPNWLTY 77
          +  +PN   Y
Sbjct: 64 LFSLPNTYPY 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 14 VCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
            ++  D ++ +  +      + +P G IE GE P  A +REL EE G+
Sbjct: 5  ALILVRDGRVLLVRKRGTD-VFYLPGGKIEAGETPLQALIRELSEELGL 52

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|226604 COG4119, COG4119, Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          GAW +P+G    GEDP LAA RE  EE GI
Sbjct: 36 GAWSIPKGEYTGGEDPWLAARREFSEEIGI 65

Length = 161

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 15 CLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIV 63
          C I    ++ + +R   PG   W  P G +E GE P+  A+REL+EETG+ 
Sbjct: 6  CFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLT 56

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 12 VGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
          VGV ++N   ++ +  R    GA  W +P G +E GE  +  A RE+ EETG+
Sbjct: 5  VGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|182536 PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 16 LINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          +I  D +I +A R    +  G W+   G +E GE    A +RELREE GI
Sbjct: 10 IIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGI 59

Length = 135

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGI 62
          +  P GGIE+GE P+ AA RE  EE G+
Sbjct: 27 YVFPGGGIEEGETPEEAAKREALEELGL 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 31/128 (24%)

Query: 14  VCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPN 73
           +C +  D  +F       PG W +  GG+E GE  + A  RE+REE G     ++ E+  
Sbjct: 19  LCKMADDRGVF-------PGQWALSGGGVEPGERIEEALRREIREELG--EQLLLTEITP 69

Query: 74  WLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKL------TNDESEINLANGEADPEFAE 127
           W T+      KT  +        G+ ++ +++ L       N + +IN        EF +
Sbjct: 70  W-TFRDDIRTKTYAD--------GRKEEIYMIYLIFDCVSANRDVKIN-------EEFQD 113

Query: 128 WKWASPEE 135
           + W  PE+
Sbjct: 114 YAWVKPED 121

Length = 141

>gnl|CDD|240021 cd04663, Nudix_Hydrolase_6, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 17/34 (50%), Positives = 26/34 (76%), Gaps = 1/34 (2%)

Query: 32 PGA-WQMPQGGIEDGEDPKLAAMRELREETGIVS 64
          P A +Q+ +G +E GE P+ AA+REL+EE+G+ S
Sbjct: 22 PLAGFQIVKGTVEPGETPEAAALRELQEESGLPS 55

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 36/130 (27%), Positives = 48/130 (36%), Gaps = 28/130 (21%)

Query: 16  LINSDSQIFVASR----LNVPGAWQMPQGG-IEDGEDPKLAAMRELREETGIVSAEIIAE 70
           + NS+ ++ V  R       PG W +  GG ++ GE     A REL EE G      I  
Sbjct: 7   VFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELG------IDG 60

Query: 71  VPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKW 130
           V   LT        T  NR+WG        K F         +  L   E   E  E  W
Sbjct: 61  VQ--LTPLGLFYYDTDGNRVWG--------KVFSCV-----YDGPLKLQEE--EVEEITW 103

Query: 131 ASPEEVVEQA 140
            S  E+++  
Sbjct: 104 LSINEILQFK 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 38 PQGGIEDGEDPKLAAMRELREETGIVSAEI 67
          P G +E GE  K AA+RE+ EETG +  E+
Sbjct: 50 PGGKVEPGETSKEAAIREVMEETGAIVKEL 79

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it [DNA metabolism, DNA replication, recombination, and repair]. Length = 156

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
          + +C  + D  + V  R    G W+ P G +E GE  + AA RE+ EETG     +
Sbjct: 4  LVICFYD-DGLLLV--RHKDRG-WEFPGGHVEPGETIEEAARREVWEETGAELGSL 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
          G W +P+GG E  E P  AA RE  EE G+ 
Sbjct: 26 GRWIVPKGGPEKDESPAEAAAREAWEEAGVR 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 12 VGVCLINSDSQIFV---ASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          V V L +SD ++ +   AS L + P  W  P G +E GE+   A +REL EETG+
Sbjct: 4  VAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 12 VGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
          V V L+  D  + V  R   P  G   +P G IE GE  + A  REL EETG+   
Sbjct: 6  VVVALLPVDDGLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD 61

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 32 PGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          PG   +P G IE GE  + A +RE++EE G+
Sbjct: 26 PGKLNIPGGHIEAGESQEEALLREVQEELGV 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 24/129 (18%)

Query: 10  PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
             VG  +   D +I +       G W +P G +E GE  + A  RE REETG+   +I  
Sbjct: 3   VTVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKF 62

Query: 70  EVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLM---KLTNDESEINLANGEADPEFA 126
            +     +                E+H  A   F++       D +E+       + E  
Sbjct: 63  AMVQEAIFS--------------EEFHKPAH--FVLFDFFARTDGTEVTP-----NEEIV 101

Query: 127 EWKWASPEE 135
           EW+W +PEE
Sbjct: 102 EWEWVTPEE 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|183303 PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional

 Score = 36.3 bits (85), Expect = 0.003
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 38  PQGGIEDGEDPKLAAMRELREETG 61
           P+G I+ GE P  AA REL+EE G
Sbjct: 79  PKGLIDPGETPLEAANRELKEEVG 102

Length = 185

>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 27/130 (20%)

Query: 12  VGVCLINSDSQIFV----ASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
           V VC+ NS  ++ +     ++   PG W +  GG     +   AA RE++EE G+   E+
Sbjct: 3   VHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETSTAAEREVKEELGL---EL 59

Query: 68  -IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFA 126
             +E+     Y               G        ++L     +  ++ L   E D    
Sbjct: 60  DFSELRPLFRY----------FFEAEGFDD-----YYLFYADVEIGKLILQKEEVD---- 100

Query: 127 EWKWASPEEV 136
           E K+ S +E+
Sbjct: 101 EVKFVSKDEI 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.93
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.93
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.9
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.88
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.86
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.86
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.86
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.86
PLN02325	144	nudix hydrolase	99.86
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.86
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.85
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.85
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.85
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.85
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.85
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.85
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.85
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.84
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.84
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.84
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.84
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.84
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.83
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.83
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.83
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.83
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.83
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.83
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.82
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.82
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.82
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.82
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.82
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.82
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.82
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.81
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.81
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.81
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.81
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.81
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.8
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.8
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.8
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.8
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.8
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.8
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.8
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.8
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.8
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.79
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.79
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.79
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.79
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.79
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.78
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.78
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.77
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.76
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.76
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.75
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.75
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.75
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.73
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.73
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.73
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.72
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.72
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.71
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.68
PRK10707	190	putative NUDIX hydrolase; Provisional	99.68
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.67
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.65
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.63
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.61
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.61
PLN02791	770	Nudix hydrolase homolog	99.61
PRK08999	312	hypothetical protein; Provisional	99.61
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.58
PLN02709	222	nudix hydrolase	99.57
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.57
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.56
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.54
PLN03143	291	nudix hydrolase; Provisional	99.5
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.42
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	99.41
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	99.38
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.33
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	99.29
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	99.17
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.09
PLN02839	372	nudix hydrolase	98.74
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	98.73
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.24
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.94
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.84
KOG4195	275	consensus Transient receptor potential-related cha	97.81
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	97.71
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	97.54
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.5
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	96.92
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	96.78
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	96.57
PRK10880	350	adenine DNA glycosylase; Provisional	96.51
PRK13910	289	DNA glycosylase MutY; Provisional	91.76
PF14443	126	DBC1: DBC1	81.37

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.93  E-value=7e-25  Score=151.31  Aligned_cols=141  Identities=56%  Similarity=1.160  Sum_probs=99.4

Q ss_pred             ccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhh--hhhccCCcccccCCccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE--IIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~~~~   85 (173)
                      +|.+|++++++.++++||++|...++.|.+|||++++||++.+||+||+.||||+.+..  ++........+.+++....
T Consensus         2 ~~~~v~~ii~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~   81 (147)
T cd03671           2 YRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKL   81 (147)
T ss_pred             CCceEEEEEEeCCCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhc
Confidence            78899999999999999999998668999999999999999999999999999998432  3333333333444332211


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHH
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVM  152 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~  152 (173)
                         +.+.+.+.++..++|++.+.......++.. .+++|+.+++|++++++.+++.++..+++..++
T Consensus        82 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~  144 (147)
T cd03671          82 ---KIWGGRYRGQEQKWFLFRFTGDDSEIDLNA-PEHPEFDEWRWVPLEELPDLIVPFKRPVYEAVL  144 (147)
T ss_pred             ---cccCCcCCCEEEEEEEEEecCCCccccCCC-CCCCCEeeEEeCCHHHHHHhchhhhHHHHHHHH
Confidence               112222344566788888876333333321 124689999999999999998776655554443

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.93  E-value=1.8e-24  Score=150.52  Aligned_cols=152  Identities=43%  Similarity=0.841  Sum_probs=107.0

Q ss_pred             CCCCCCCccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhh--hhccCCccccc
Q 030711            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYD   78 (173)
Q Consensus         1 m~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~   78 (173)
                      |++-. .+|.+|+++|++.++++||++|...++.|.+|||++++||++.+||.||+.||||+.+..+  +........+.
T Consensus         1 ~~~~~-~~~~~v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~   79 (156)
T PRK00714          1 MIDDD-GYRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYD   79 (156)
T ss_pred             CCCCC-CCCCeEEEEEEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEec
Confidence            44443 4899999999999999999999876689999999999999999999999999999985322  22222233444


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhh
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY  158 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~  158 (173)
                      ++......    ....+.+...++|++..........+.. .+.+|+.+++|++++++.+++.+.+..++..+++.|...
T Consensus        80 ~~~~~~~~----~~~~~~~~~~~~fl~~~~~~~~~~~l~~-~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~~~~~~  154 (156)
T PRK00714         80 LPKRLVRR----SKGVYRGQKQKWFLLRLTGDDSEINLNT-TSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLKEFARL  154 (156)
T ss_pred             CcHHHhhc----cCCcccCcEEEEEEEEecCCCccccCCC-CCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence            44332111    1123334456788888764433333221 133689999999999999988776667777777766554

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.90  E-value=9.8e-23  Score=140.72  Aligned_cols=138  Identities=22%  Similarity=0.413  Sum_probs=88.3

Q ss_pred             CCCccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch--hhhhhccCC--cccccCC
Q 030711            5 PSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS--AEIIAEVPN--WLTYDFP   80 (173)
Q Consensus         5 ~~~~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~--~~~~~~~~~--~~~~~~~   80 (173)
                      +...+.+|++++++.++++||++|...++.|.+|||++++|||+.+||+||+.||||+.+  ..... +..  ...+.+.
T Consensus         3 ~~~~~~~v~~vi~~~~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~   81 (148)
T PRK09438          3 PYKRPVSVLVVIYTPDLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTL-IDCQRSIEYEIF   81 (148)
T ss_pred             CccCceEEEEEEEeCCCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceee-cccccccccccc
Confidence            334778888899999999999998776789999999999999999999999999999985  22111 110  0011111


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~  157 (173)
                      .....    ...........++|.+..... ...      ..+|+.++.|++++++.++...   +....+++.+..
T Consensus        82 ~~~~~----~~~~~~~~~~~~~f~~~~~~~-~~~------~~~E~~~~~W~~~~e~~~~~~~---~~~~~~l~~~~~  144 (148)
T PRK09438         82 PHWRH----RYAPGVTRNTEHWFCLALPHE-RPV------VLTEHLAYQWLDAREAAALTKS---WSNAEAIEQLVI  144 (148)
T ss_pred             hhhhh----ccccccCCceeEEEEEecCCC-Ccc------ccCcccceeeCCHHHHHHHhcC---hhHHHHHHHHHH
Confidence            00000    000111122345666654321 111      2248899999999999998653   555555555443

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.88  E-value=1.5e-21  Score=134.16  Aligned_cols=130  Identities=18%  Similarity=0.389  Sum_probs=85.5

Q ss_pred             eeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        11 ~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      .+++++++.+ +++||+++.. ++.|+||||++++|||+.+||+||++||||+.+..... ...+....+          
T Consensus         3 ~~gaii~~~~~~~vLLvr~~~-~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~~~~~----------   70 (145)
T cd03672           3 VYGAIILNEDLDKVLLVKGWK-SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYIELII----------   70 (145)
T ss_pred             eeEEEEEeCCCCEEEEEEecC-CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceeeeccc----------
Confidence            5667788765 6999999875 45899999999999999999999999999998543221 111000110          


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc-------CchHHHHHHHHHhhhhhh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY-------KRPTYEEVMRTFRPYLNE  161 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~-------~~~~~~~~~~~l~~~~~~  161 (173)
                            .....++|++...........   .+.+|+..++|++++++.++....       ...++...+..+.+|++.
T Consensus        71 ------~~~~~~~f~~~~~~~~~~~~~---~~~~E~~~~~Wv~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (145)
T cd03672          71 ------RGQNVKLYIVPGVPEDTPFEP---KTRKEISKIEWFDIKDLPTKKNKKIPGLNSNKFFMVIPFIKPLKKWINR  140 (145)
T ss_pred             ------CCcEEEEEEEecCCCCcccCc---CChhhhheEEEeeHHHhhhhhhhccccccccceEEEhHHHHHHHHHHHH
Confidence                  111234444433222111111   123589999999999999986553       335667777777777765

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=2.4e-21  Score=130.10  Aligned_cols=114  Identities=19%  Similarity=0.312  Sum_probs=77.1

Q ss_pred             cceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (173)
                      |.+|+++|++.++++||++|...  ++.|.+|||++++||++.+||+||++||||+.+... ..+.. ..+.+.....  
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~-~~~~~-~~~~~~~~~~--   77 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST-RLLCV-VDHIIEEPPQ--   77 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc-eEEEE-EeecccCCCC--
Confidence            56788899999899999998753  479999999999999999999999999999985322 22111 1111111000  


Q ss_pred             cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                                .....+|++......  ...   .+.+|+.+++|++++++.+.+.
T Consensus        78 ----------~~~~~~f~~~~~~~~--~~~---~~~~E~~~~~W~~~~~l~~~l~  117 (125)
T cd04679          78 ----------HWVAPVYLAENFSGE--PRL---MEPDKLLELGWFALDALPQPLT  117 (125)
T ss_pred             ----------eEEEEEEEEeecCCc--ccc---CCCccccEEEEeCHHHCCchhH
Confidence                      112345555544322  111   1225889999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.86  E-value=1.1e-20  Score=128.72  Aligned_cols=116  Identities=24%  Similarity=0.262  Sum_probs=81.7

Q ss_pred             cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +.+|.++++++++++||+++.+   .++.|.+|||+++.||++.+||+||++||||+.+..+.....    +.+...   
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~----~~~~~~---   74 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGS----FYPSPG---   74 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEee----EecCCc---
Confidence            5688889999999999998765   246899999999999999999999999999999643322211    111110   


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                               .......+|++..........    .+++|+..++|++++++.+++..+.
T Consensus        75 ---------~~~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~~~~~~~  120 (137)
T cd03424          75 ---------FSDERIHLFLAEDLSPGEEGL----LDEGEDIEVVLVPLDEALELLADGE  120 (137)
T ss_pred             ---------ccCccEEEEEEEcccccccCC----CCCCCeeEEEEecHHHHHHHHHcCC
Confidence                     011124566666554322122    2336899999999999999987654

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=7.4e-21  Score=127.71  Aligned_cols=114  Identities=26%  Similarity=0.450  Sum_probs=73.9

Q ss_pred             ceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      .+|+++|++.++++||++|..+.|.|.+|||++++|||+.+||+||++||||+++........  ..+.+......    
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~--~~~~~~~~~~~----   76 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMV--QEAIFSEEFHK----   76 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEE--EEEeccCCCCC----
Confidence            456778888889999998876678999999999999999999999999999998533221110  11111111000    


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                          . .......|.+....  .....     .+|+.+++|++++++.++..
T Consensus        77 ----~-~~~~~~~~~~~~~~--~~~~~-----~~e~~~~~W~~~~el~~~~~  116 (125)
T cd04696          77 ----P-AHFVLFDFFARTDG--TEVTP-----NEEIVEWEWVTPEEALDYPL  116 (125)
T ss_pred             ----c-cEEEEEEEEEEecC--CcccC-----CcccceeEEECHHHHhcCCC
Confidence                0 01112233333332  12221     14889999999999998744

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.86  E-value=8.8e-21  Score=128.06  Aligned_cols=124  Identities=27%  Similarity=0.529  Sum_probs=81.1

Q ss_pred             ceeEEEEEecC---CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711           10 PNVGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (173)
Q Consensus        10 ~~v~~~i~~~~---~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (173)
                      .++++++++.+   ++|||++|.+ .+.|.+|||++++|||+.+||.||++||||+.+..+.. +.. ..+.++..    
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~-~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~-~~~-~~~~~~~~----   74 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPR-GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGT-IRYWFSSS----   74 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCC-CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecce-EEE-EEEeccCC----
Confidence            46677777765   8999999886 47899999999999999999999999999998533221 111 11222211    


Q ss_pred             cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHH
Q 030711           87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRT  154 (173)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~  154 (173)
                            .........+|.+......  ...   .+..|+..+.|++++++.+++.   .+....+++.
T Consensus        75 ------~~~~~~~~~~~~~~~~~~~--~~~---~~~~E~~~~~W~~~~el~~~~~---~~~~~~~l~~  128 (131)
T cd03673          75 ------GKRVHKTVHWWLMRALGGE--FTP---QPDEEVDEVRWLPPDEARDRLS---YPNDRELLRA  128 (131)
T ss_pred             ------CCCcceEEEEEEEEEcCCC--ccc---CCCCcEEEEEEcCHHHHHHHcC---CHhHHHHHHH
Confidence                  0011223455555554332  221   1235889999999999998764   3555555543

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>PLN02325 nudix hydrolase

Probab=99.86  E-value=1.4e-20  Score=129.24  Aligned_cols=124  Identities=19%  Similarity=0.234  Sum_probs=77.0

Q ss_pred             CCCCCCCccceeEEEEEecCCcEEEEEecCCC--CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcc-cc
Q 030711            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWL-TY   77 (173)
Q Consensus         1 m~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~--~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~-~~   77 (173)
                      |+.-.+..+.++.+++++ +++|||++|...+  |.|.+|||+++.|||+.+||+||++||||+.+.... .+.... .+
T Consensus         1 ~~~~~~~p~~~v~~vi~~-~~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~-~l~~~~~~~   78 (144)
T PLN02325          1 METGEPIPRVAVVVFLLK-GNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIE-LLTVTNNVF   78 (144)
T ss_pred             CCCCCCCCeEEEEEEEEc-CCEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceE-EEEEeccee
Confidence            444444456667766665 4799999988643  689999999999999999999999999999853321 111100 01


Q ss_pred             cCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           78 DFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                      ......            .+....+|.+..........   ..+++++.+++|+++++++....
T Consensus        79 ~~~~~~------------~~~i~~~f~~~~~~~~~~~~---~~e~~e~~~~~W~~~d~Lp~~~~  127 (144)
T PLN02325         79 LEEPKP------------SHYVTVFMRAVLADPSQVPQ---NLEPEKCYGWDWYEWDNLPEPLF  127 (144)
T ss_pred             ecCCCC------------cEEEEEEEEEEECCCCCCCC---cCCchhcCceEEEChHHCChhhh
Confidence            101000            01123444444433221111   12345678899999999997544

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.86  E-value=8.1e-21  Score=128.29  Aligned_cols=109  Identities=28%  Similarity=0.487  Sum_probs=73.0

Q ss_pred             eeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      +|.++|++.++++||++|...  +|.|.+|||++++|||+.+||.||++||||+++..+.........+.+....     
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~-----   77 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGME-----   77 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCce-----
Confidence            577788899999999998763  4799999999999999999999999999999854332211111111111100     


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHH
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV  137 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~  137 (173)
                             ......+|++.+....  ..    .+.+|+..++|++++++.
T Consensus        78 -------~~~~~~~~~~~~~~~~--~~----~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          78 -------YDTLDLFFVCQVDDKP--IV----KAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             -------eEEEEEEEEEEeCCCC--Cc----CChHHhheeEEecHHHCC
Confidence                   0111235555554322  11    122588999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.8e-20  Score=126.19  Aligned_cols=112  Identities=29%  Similarity=0.439  Sum_probs=75.2

Q ss_pred             cceeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      +.+|+++|++.+++|||++|+.. ++.|.+|||++++|||+.+||+||++||||+... ....+.....+.+.   .   
T Consensus         2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~-~~~~~~~~~~~~~~---~---   74 (127)
T cd04670           2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTE-FVSVVGFRHAHPGA---F---   74 (127)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcc-eeEEEEEEecCCCC---c---
Confidence            46788889999999999987653 6899999999999999999999999999999842 22211111111100   0   


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA  140 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  140 (173)
                               .....+|++.+........    .+++|+..++|++++++.+..
T Consensus        75 ---------~~~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~~~  114 (127)
T cd04670          75 ---------GKSDLYFICRLKPLSFDIN----FDTSEIAAAKWMPLEEYISQP  114 (127)
T ss_pred             ---------CceeEEEEEEEccCcCcCC----CChhhhheeEEEcHHHHhcch
Confidence                     0112445555543222222    233688899999999997753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.85  E-value=1.3e-20  Score=129.29  Aligned_cols=116  Identities=24%  Similarity=0.324  Sum_probs=80.1

Q ss_pred             ccceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +..+|+++|++.++++||+++...  ++.|++|||++++|||+.+||+||++||||+++... ..+.. +...++...  
T Consensus        12 ~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~~~~-~~~~~~~~~--   87 (142)
T cd04700          12 EARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV-KFLGT-YLGRFDDGV--   87 (142)
T ss_pred             eeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc-EEEEE-EEEEcCCCc--
Confidence            667888899998899999987653  478999999999999999999999999999985332 22211 111121110  


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY  143 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  143 (173)
                                 ....++|++..........     ..+|+.+++|++++++.+++...
T Consensus        88 -----------~~~~~~f~~~~~~~~~~~~-----~~~E~~~~~w~~~~el~~~~~~g  129 (142)
T cd04700          88 -----------LVLRHVWLAEPEGQTLAPK-----FTDEIAEASFFSREDVAQLYAQG  129 (142)
T ss_pred             -----------EEEEEEEEEEecCCccccC-----CCCCEEEEEEECHHHhhhccccc
Confidence                       0123556666543221211     12588999999999999987653

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.85  E-value=2.3e-20  Score=127.84  Aligned_cols=56  Identities=32%  Similarity=0.548  Sum_probs=48.8

Q ss_pred             cceeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711            9 RPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   64 (173)
                      .+.+++++++.++++||++|..    ++|.|++|||++++|||+.+||+||++||||+.+
T Consensus         3 ~r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~   62 (141)
T PRK15472          3 QRTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL   62 (141)
T ss_pred             ceeEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce
Confidence            3566677777789999999865    4589999999999999999999999999999984

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=2.9e-20  Score=126.96  Aligned_cols=56  Identities=34%  Similarity=0.541  Sum_probs=50.5

Q ss_pred             cceeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711            9 RPNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (173)
Q Consensus         9 ~~~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~   65 (173)
                      |.+|++++++++ +++||++|.. .+.|.+|||++++||++.+||.||++||||+.+.
T Consensus         2 ~~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~   58 (138)
T cd03674           2 HFTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELL   58 (138)
T ss_pred             cEEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcc
Confidence            567888899887 9999999876 5789999999999999999999999999999843

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.85  E-value=1.3e-20  Score=129.49  Aligned_cols=118  Identities=19%  Similarity=0.287  Sum_probs=74.8

Q ss_pred             cceeEEEEEecCCcEEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhh-hccCCcccccCCccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII-AEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~~~~~~~~~~~~   85 (173)
                      +.+|+++|++.++++||++|..  .+|.|.+|||++++|||+.+||+||++||||+.+.... ..+.. ..+.+......
T Consensus        12 ~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~-~~~~~~~~~~~   90 (144)
T cd03430          12 LVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGV-FEHFYDDNFFG   90 (144)
T ss_pred             eEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEE-EEEEecccccc
Confidence            4577778889899999999875  35899999999999999999999999999999853210 11111 11111110000


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                      .      ..-.+....+|.+.....  ....    .++|+.+++|++++++.+.
T Consensus        91 ~------~~~~~~~~~~~~~~~~~~--~~~~----~~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          91 D------DFSTHYVVLGYVLKLSSN--ELLL----PDEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             C------CCccEEEEEEEEEEEcCC--cccC----CchhccEeEEecHHHHhcC
Confidence            0      000011223444444332  2221    3368899999999999974

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.85  E-value=1.1e-20  Score=131.25  Aligned_cols=118  Identities=15%  Similarity=0.290  Sum_probs=74.3

Q ss_pred             cceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (173)
                      ..+|.++|++++++|||++|...  +|.|.+|||++++|||+.+||+||++||||+.+......+-....+.+...... 
T Consensus        17 ~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~-   95 (159)
T PRK15434         17 LISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSG-   95 (159)
T ss_pred             eEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCC-
Confidence            45777788888899999999753  479999999999999999999999999999984211111101011111110000 


Q ss_pred             cccccCCcc-ccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           87 VNRLWGGEW-HGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        87 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                            ..+ ......+|.+....  ....+    +..|+.+++|++++++.+.
T Consensus        96 ------~~~~~~~i~~~f~~~~~~--g~~~~----~~~E~~~~~W~~~~el~~~  137 (159)
T PRK15434         96 ------TDFTTHYVVLGFRLRVAE--EDLLL----PDEQHDDYRWLTPDALLAS  137 (159)
T ss_pred             ------CccceEEEEEEEEEEecC--CcccC----ChHHeeEEEEEeHHHhhhc
Confidence                  000 00122344444432  23332    2258999999999999875

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.85  E-value=1.2e-20  Score=127.53  Aligned_cols=118  Identities=36%  Similarity=0.672  Sum_probs=84.1

Q ss_pred             ccceeEEEEEecCCcEEEEEecCCC----CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNVP----GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAV   83 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~~----~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   83 (173)
                      +|++|++++++.++++||++|++.+    +.|.+|||++++|||+.+||+||+.||||+..........  ..+......
T Consensus         1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~--~~~~~~~~~   78 (134)
T PF00293_consen    1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGL--FSYPSPSGD   78 (134)
T ss_dssp             EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEE--EEEEETTTE
T ss_pred             CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccccccee--eeecccCCC
Confidence            4789999999999999999999854    7999999999999999999999999999999522111111  111111111


Q ss_pred             ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                      .           .+...++|.+.............    .|+..++|++++++.++...
T Consensus        79 ~-----------~~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~W~~~~el~~~~~~  122 (134)
T PF00293_consen   79 P-----------EGEIVIFFIAELPSEQSEIQPQD----EEISEVKWVPPDELLELLLN  122 (134)
T ss_dssp             S-----------SEEEEEEEEEEEEEEESECHTTT----TTEEEEEEEEHHHHHHHHHT
T ss_pred             c-----------ccEEEEEEEEEEeCCccccCCCC----ccEEEEEEEEHHHhhhchhC
Confidence            0           12235666666665443333322    38999999999999998764

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=2.6e-20  Score=125.65  Aligned_cols=114  Identities=25%  Similarity=0.385  Sum_probs=78.7

Q ss_pred             cceeEEEEEecCCcEEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (173)
                      +.+|.++|++.++++||++|..  ..+.|.+|||++++|||+.+||.||++||||+.+..+ ..+..+... ++..    
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~-~~~~~~~~~-~~~~----   75 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV-QFLTVTNDV-FEEE----   75 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce-EEEEEEeEE-eCCC----
Confidence            5678889999999999999985  4589999999999999999999999999999985332 222111111 1110    


Q ss_pred             cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                              .......+|.+.........+.   .+++|+.+++|++++++.++
T Consensus        76 --------~~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          76 --------GKHYVTIFVKAEVDDGEAEPNK---MEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             --------CcEEEEEEEEEEeCCCCcccCC---CCCceeCceEEeCHHHCCCc
Confidence                    0111345666666543222221   13467889999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=1.9e-20  Score=124.64  Aligned_cols=109  Identities=22%  Similarity=0.323  Sum_probs=73.5

Q ss_pred             eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL   90 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (173)
                      +|.+++++.++++||++|.. .+.|.+|||++++|||+.+||+||++||||+.+......+..   +.+....       
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~-~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~---~~~~~~~-------   70 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTY-GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGV---YYHSASG-------   70 (120)
T ss_pred             ceEEEEECCCCeEEEEEECC-CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEE---EecCCCC-------
Confidence            57788899999999999876 448999999999999999999999999999995412222211   1111100       


Q ss_pred             cCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           91 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                           .....++|.+.....  ...    .+.+|+..++|++++++++.+.
T Consensus        71 -----~~~~~~~f~~~~~~~--~~~----~~~~E~~~~~w~~~~~l~~~~~  110 (120)
T cd04680          71 -----SWDHVIVFRARADTQ--PVI----RPSHEISEARFFPPDALPEPTT  110 (120)
T ss_pred             -----CceEEEEEEecccCC--Ccc----CCcccEEEEEEECHHHCcccCC
Confidence                 011223444433322  211    2336889999999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=3.3e-20  Score=127.51  Aligned_cols=120  Identities=20%  Similarity=0.313  Sum_probs=80.1

Q ss_pred             ccceeEEEEEecC---CcEEEEEecC----CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCCchhh-hhhccCCccccc
Q 030711            8 YRPNVGVCLINSD---SQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAE-IIAEVPNWLTYD   78 (173)
Q Consensus         8 ~~~~v~~~i~~~~---~~vLl~~r~~----~~~~w~l-PgG~ie~gE~~~~aa~RE~~EEtGl~~~~-~~~~~~~~~~~~   78 (173)
                      ||++|.++|++.+   +++|+++|..    +||.|.+ |||++++|||+.+||+||++||||+.... .+..+.. ..+.
T Consensus         1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~-~~~~   79 (144)
T cd04692           1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGT-FKIE   79 (144)
T ss_pred             CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeE-EEEe
Confidence            6889999999988   8999999874    5789999 59999999999999999999999997421 1111111 1111


Q ss_pred             CC-cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           79 FP-PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        79 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                      +. ..          ........++|++..........    .+++|+..++|++++++.+++..
T Consensus        80 ~~~~~----------~~~~~~~~~~f~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~~  130 (144)
T cd04692          80 YDHIG----------KLIDREFHHVYLYELKVPLEEFT----LQKEEVAGVVLIPLDEFAELLEE  130 (144)
T ss_pred             ccccC----------CCccceEEEEEEEeccCChhhcC----CChhHhheEEEECHHHHHHHHHc
Confidence            11 00          00001123456555543211222    23368999999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.84  E-value=6.2e-20  Score=128.91  Aligned_cols=118  Identities=24%  Similarity=0.308  Sum_probs=79.7

Q ss_pred             ccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhccC-CcccccCCc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVP-NWLTYDFPP   81 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~-~~~~~~~~~   81 (173)
                      +|.+|+++|++.++++||++|..    +||.|.+| ||++++||++.+||+||++||||+.+........ ..+...+..
T Consensus        29 ~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  108 (165)
T cd02885          29 LHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDG  108 (165)
T ss_pred             ceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCC
Confidence            48899999999999999999874    57899997 8999999999999999999999999533222111 101111111


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY  143 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  143 (173)
                      ..           ......++|.+....   ...    .+.+|+.+++|++++++.+++...
T Consensus       109 ~~-----------~~~~i~~~f~~~~~~---~~~----~~~~Ev~~~~w~~~~el~~~~~~~  152 (165)
T cd02885         109 GL-----------VEHEIDHVFFARADV---TLI----PNPDEVSEYRWVSLEDLKELVAAA  152 (165)
T ss_pred             Cc-----------eeeEEEEEEEEEeCC---CCC----CCccceeEEEEECHHHHHHHHHhC
Confidence            00           001122344444332   111    133688999999999999987654

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.84  E-value=1.1e-19  Score=122.71  Aligned_cols=122  Identities=25%  Similarity=0.427  Sum_probs=79.3

Q ss_pred             cceeEEEEEecCC---cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            9 RPNVGVCLINSDS---QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~---~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      .+++++++++.++   ++||++|+.  +.|.+|||++++|||+.+||+||++||||+....+.........+.+...   
T Consensus         2 ~~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~---   76 (130)
T cd03428           2 ERSAGAIIYRRLNNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVR---   76 (130)
T ss_pred             ceEEEEEEEEecCCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEcccc---
Confidence            3567777776554   689998886  88999999999999999999999999999995443322111111211110   


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHH
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMR  153 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~  153 (173)
                               .......+|++..... .....    . +|+..+.|++++++.+++..   +.++.+++
T Consensus        77 ---------~~~~~~~~f~~~~~~~-~~~~~----~-~E~~~~~W~~~~e~~~~~~~---~~~~~~~~  126 (130)
T cd03428          77 ---------GKLKTVTYFLAELRPD-VEVKL----S-EEHQDYRWLPYEEALKLLTY---EDLKAVLD  126 (130)
T ss_pred             ---------CcceEEEEEEEEeCCC-Ccccc----c-cceeeEEeecHHHHHHHcCc---hhHHHHHH
Confidence                     0112345666665522 12222    1 48889999999999998653   34444443

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=8e-20  Score=123.29  Aligned_cols=113  Identities=28%  Similarity=0.410  Sum_probs=77.5

Q ss_pred             ceeEEEEEec--CCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcc---cccCCccc
Q 030711           10 PNVGVCLINS--DSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWL---TYDFPPAV   83 (173)
Q Consensus        10 ~~v~~~i~~~--~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~---~~~~~~~~   83 (173)
                      +.|++++++.  ++++||++|.+. ++.|.+|||++++||++.+||+||++||||+....... +....   .+.+....
T Consensus         2 ~~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~   80 (129)
T cd04664           2 RSVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTL-LDRGASIAFVEFTDNG   80 (129)
T ss_pred             cEEEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEE-EeecccccccccCCCc
Confidence            5678888888  899999999874 78999999999999999999999999999998532211 11111   11111110


Q ss_pred             ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                                  .....++|++.+.... . ..    .++|+.+++|++++++.+++.
T Consensus        81 ------------~~~~~~~f~~~~~~~~-~-~~----~~~E~~~~~W~~~~e~~~~~~  120 (129)
T cd04664          81 ------------RVWTEHPFAFHLPSDA-V-VT----LDWEHDAFEWVPPEEAAALLL  120 (129)
T ss_pred             ------------eEEEEeEEEEEcCCCC-c-cc----CCccccccEecCHHHHHHHHc
Confidence                        1112355666555432 1 11    225888999999999998765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=9e-20  Score=121.94  Aligned_cols=109  Identities=27%  Similarity=0.416  Sum_probs=71.7

Q ss_pred             eeEEEEEecCCcEEEEEecC-----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711           11 NVGVCLINSDSQIFVASRLN-----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~-----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      .|+++++..++++||++|..     ++|.|.+|||+++.||++.+||+||+.||||+++.......  ...+.++.    
T Consensus         2 ~v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~--~~~~~~~~----   75 (122)
T cd04682           2 GVALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPW--FRVYPSAS----   75 (122)
T ss_pred             ceEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccce--eEecccCC----
Confidence            34555555559999999975     35899999999999999999999999999999853211111  11121110    


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA  140 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  140 (173)
                                .....++|.+...... ....    ..+|+.+++|++++++.+..
T Consensus        76 ----------~~~~~~~f~~~~~~~~-~~~~----~~~E~~~~~W~~~~el~~~~  115 (122)
T cd04682          76 ----------PPGTEHVFVVPLTARE-DAIL----FGDEGQALRLMTVEEFLAHE  115 (122)
T ss_pred             ----------CCceEEEEEEEEecCC-Cccc----cCchhheeecccHHHHhhcc
Confidence                      0112345555554322 1222    33689999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=3.7e-20  Score=125.32  Aligned_cols=57  Identities=35%  Similarity=0.629  Sum_probs=50.9

Q ss_pred             ccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~   65 (173)
                      .+.++++++++.++++||++|... +.|.+|||++++|||+.+||+||++||||++..
T Consensus         6 ~~~~~~~~v~~~~~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~   62 (132)
T cd04677           6 ILVGAGVILLNEQGEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVE   62 (132)
T ss_pred             cccceEEEEEeCCCCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeee
Confidence            566777788888899999998863 789999999999999999999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.83  E-value=2.2e-19  Score=121.49  Aligned_cols=105  Identities=29%  Similarity=0.457  Sum_probs=68.7

Q ss_pred             ecCCcEEEEEecC-CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCCccc
Q 030711           18 NSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWH   96 (173)
Q Consensus        18 ~~~~~vLl~~r~~-~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (173)
                      +.++++||++|.. .+|.|.+|||++++|||+.+||+||++||||+++..+... .. ....|.....           .
T Consensus        11 ~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~-~~-~~~~~~~~~~-----------~   77 (131)
T cd04695          11 DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNA-DY-LEQFYEANDN-----------R   77 (131)
T ss_pred             CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccc-cc-eeeEeecCCc-----------e
Confidence            4567899999886 4689999999999999999999999999999985433211 10 0111111000           0


Q ss_pred             cceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           97 GQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                      .....+|++...... ....     .+|+.+++|++++++.+++.
T Consensus        78 ~~~~~~f~~~~~~~~-~~~~-----~~E~~~~~W~~~~e~~~~~~  116 (131)
T cd04695          78 ILMAPVFVGFVPPHQ-EVVL-----NHEHTEYRWCSFAEALELAP  116 (131)
T ss_pred             EEEEEEEEEEecCCC-cccc-----CchhcccEecCHHHHHHhcC
Confidence            012334555544321 1111     15889999999999998865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.83  E-value=1.2e-19  Score=122.87  Aligned_cols=105  Identities=29%  Similarity=0.415  Sum_probs=74.1

Q ss_pred             eeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      +|.+.+++.++++||++|.+. ++.|.+|||++++||++.+||+||++||||+....+.....  ..+.++         
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~--~~~~~~---------   70 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGS--QPWPFP---------   70 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEee--cCCCCC---------
Confidence            566677778799999998865 47999999999999999999999999999998643322211  111111         


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                             ....++|++....  .....    +.+|+.++.|++++++.++
T Consensus        71 -------~~~~~~f~~~~~~--~~~~~----~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          71 -------SSLMLGFTAEADS--GEIVV----DDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             -------ceEEEEEEEEEcC--CcccC----CchhhhccEeecHHHHhhc
Confidence                   1123455555543  22222    3368899999999999985

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.83  E-value=2.8e-19  Score=121.39  Aligned_cols=120  Identities=19%  Similarity=0.254  Sum_probs=76.2

Q ss_pred             EEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCC
Q 030711           15 CLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG   93 (173)
Q Consensus        15 ~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (173)
                      +++..++++||++|.+. .+.|.+|||++++|||+.+||.||++||||+++..... .. ...+..+....         
T Consensus         5 ~ii~~~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~-~~~~~~~~~~~---------   73 (134)
T cd03675           5 AVVERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTAL-LG-IYQWTAPDSDT---------   73 (134)
T ss_pred             EEEEECCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceE-EE-EEEeecCCCCe---------
Confidence            44556789999998864 36999999999999999999999999999998532211 11 11122111000         


Q ss_pred             ccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHH
Q 030711           94 EWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMR  153 (173)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~  153 (173)
                         ....++|.+.+......  .   ...+|+..+.|++++++..+......+.+.+.+.
T Consensus        74 ---~~~~~~f~~~~~~~~~~--~---~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~  125 (134)
T cd03675          74 ---TYLRFAFAAELLEHLPD--Q---PLDSGIVRAHWLTLEEILALAARLRSPLVLRCIE  125 (134)
T ss_pred             ---eEEEEEEEEEECCCCCC--C---CCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHH
Confidence               01234555555433211  1   1225788999999999999875433444444443

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.82  E-value=1.3e-19  Score=121.82  Aligned_cols=116  Identities=19%  Similarity=0.297  Sum_probs=73.9

Q ss_pred             eeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      ++.++|++. +++||++|.+.  ++.|.+|||++++||++.+||+||++||||+..... ..+... .+.++....    
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~-~~~~~~~~~----   74 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG-RRLGSA-SRYFYSPDG----   74 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc-eeeeEE-EEEEECCCC----
Confidence            456666765 99999999874  489999999999999999999999999999985332 222211 111111000    


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                          ........++|.+..........    ...+|...+.|++++++.+...
T Consensus        75 ----~~~~~~~~~~f~~~~~~~~~~~~----~~~~e~~~~~W~~~~~l~~~~~  119 (128)
T cd04684          75 ----DYDAHHLCVFYDARVVGGALPVQ----EPGEDSHGAAWLPLDEAIERLL  119 (128)
T ss_pred             ----CeeccEEEEEEEEEEecCccccC----CCCCCceeeEEECHHHhhccCC
Confidence                00011223555555554321101    2235778999999999997543

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.1e-19  Score=122.33  Aligned_cols=112  Identities=24%  Similarity=0.372  Sum_probs=74.8

Q ss_pred             eeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711           11 NVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +|.+++++.+++|||++|..    .+|.|++| ||++++||++ +||+||++||||+.+......  ....+.+....  
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~--~~~~~~~~~~~--   76 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELR--PLFRYFFEAEG--   76 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcE--EEEEEEeecCC--
Confidence            57778899999999999874    46899998 8999999999 999999999999985321111  11112221100  


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                                   ...++++..........    .+.+|+.+++|++++++.+++....
T Consensus        77 -------------~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~~~~~~~  118 (127)
T cd04693          77 -------------FDDYYLFYADVEIGKLI----LQKEEVDEVKFVSKDEIDGLIGHGE  118 (127)
T ss_pred             -------------eEEEEEEEecCcccccc----cCHHHhhhEEEeCHHHHHHHHhcCC
Confidence                         11233333332222222    2336889999999999999876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.82  E-value=2.8e-19  Score=127.08  Aligned_cols=112  Identities=21%  Similarity=0.279  Sum_probs=74.6

Q ss_pred             ccceeEEEEEecCCcEEEEEecC----CCCeE-ECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w-~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (173)
                      .+.++.++|++.++++||++|..    .||.| .+|||++++|||+.+||+||++||||+.+..+... .   .+.+...
T Consensus        36 ~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~-~---~~~~~~~  111 (180)
T PRK15393         36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEH-G---QFYFEDE  111 (180)
T ss_pred             ceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceec-e---eEEecCC
Confidence            57778888899999999999874    35655 58999999999999999999999999985332211 1   1111111


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                      ..            .....+|.+...   ....    .+++|+..+.|++++++.+++..
T Consensus       112 ~~------------~~~~~~f~~~~~---~~~~----~~~~E~~~~~W~~~~el~~~~~~  152 (180)
T PRK15393        112 NC------------RVWGALFSCVSH---GPFA----LQEEEVSEVCWMTPEEITARCDE  152 (180)
T ss_pred             Cc------------eEEEEEEEEEeC---CCCC----CChHHeeEEEECCHHHHhhhhhh
Confidence            00            001123333322   1222    23368999999999999998643

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.82  E-value=2.6e-19  Score=127.78  Aligned_cols=121  Identities=20%  Similarity=0.405  Sum_probs=83.0

Q ss_pred             CCccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccccc--
Q 030711            6 SGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD--   78 (173)
Q Consensus         6 ~~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~--   78 (173)
                      ..++++|+++|++.+++|||++|..    .||.|.+| ||++++||++.+||+||+.||||+.+..+...... ..+.  
T Consensus        31 ~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~-~~~~~~  109 (184)
T PRK03759         31 TPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPD-FRYRAT  109 (184)
T ss_pred             CCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccce-EEEEEe
Confidence            4588999999999999999999853    57888887 89999999999999999999999986433222211 1111  


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCc
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKR  145 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~  145 (173)
                      ++...           ......++|++....   ...    .+++|+.++.|++++++.+++.....
T Consensus       110 ~~~~~-----------~~~~~~~vf~~~~~~---~~~----~~~~Ev~~~~W~~~~el~~~i~~~~~  158 (184)
T PRK03759        110 DPNGI-----------VENEVCPVFAARVTS---ALQ----PNPDEVMDYQWVDPADLLRAVDATPW  158 (184)
T ss_pred             cCCCc-----------eeeEEEEEEEEEECC---CCC----CChhHeeeEEEECHHHHHHHHHhCCc
Confidence            11110           001123455554432   222    23368999999999999999876643

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.2e-19  Score=122.00  Aligned_cols=110  Identities=23%  Similarity=0.316  Sum_probs=76.0

Q ss_pred             ceeEEEEEecCCcEEEEEecC----CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccc
Q 030711           10 PNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~----~~~~w~l-PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (173)
                      +++.+++++.++++||++|..    .+|.|++ |||++++||++.+||+||++||||+.+..+....    .+.+.....
T Consensus         1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~----~~~~~~~~~   76 (126)
T cd04697           1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLG----LFYYDTDGN   76 (126)
T ss_pred             CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEee----EEEecCCCc
Confidence            467889999999999999874    4689999 5999999999999999999999999964332221    222221110


Q ss_pred             cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                                  ....++|.+....   ...    .+++|+.++.|++++++.+++..
T Consensus        77 ------------~~~~~~f~~~~~~---~~~----~~~~E~~~~~w~~~~el~~~~~~  115 (126)
T cd04697          77 ------------RVWGKVFSCVYDG---PLK----LQEEEVEEITWLSINEILQFKEG  115 (126)
T ss_pred             ------------eEEEEEEEEEECC---CCC----CCHhHhhheEEcCHHHHHHHhhc
Confidence                        0012344443321   222    23368899999999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.6e-19  Score=119.90  Aligned_cols=104  Identities=26%  Similarity=0.402  Sum_probs=69.1

Q ss_pred             eEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711           12 VGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus        12 v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      |++++++ ++++||++|..    .+|.|++|||++++||++.+||+||++||||+++..+....    .+.++...    
T Consensus         3 v~~vi~~-~~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~----~~~~~~~~----   73 (117)
T cd04691           3 VVGVLFS-DDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLC----SLYHPTSE----   73 (117)
T ss_pred             EEEEEEE-CCEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEE----EEeccCCC----
Confidence            3334454 48999999874    45799999999999999999999999999999853332221    11111110    


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                               ....++|.+.....  ...      .+|+..+.|+++++++....
T Consensus        74 ---------~~~~~~~~~~~~~~--~~~------~~E~~~~~W~~~~~l~~~~~  110 (117)
T cd04691          74 ---------LQLLHYYVVTFWQG--EIP------AQEAAEVHWMTANDIVLASE  110 (117)
T ss_pred             ---------eEEEEEEEEEEecC--CCC------cccccccEEcCHHHcchhhh
Confidence                     11234444443321  111      15889999999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=2e-19  Score=119.81  Aligned_cols=111  Identities=26%  Similarity=0.444  Sum_probs=70.5

Q ss_pred             eeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh--hhhhccCCcccccCCccccc
Q 030711           11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +|.++|++ +++|||++|.+   .+|.|.+|||++++|||+.+||+||++||||+.+.  .+.. +.. ..+.+.. .  
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~-~~~-~~~~~~~-~--   75 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRL-AHT-MHRRTED-I--   75 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEE-EEecCCC-C--
Confidence            45555554 58999999875   25799999999999999999999999999999853  2211 111 0111110 0  


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                                ......+|.+.....  ....   .+++|+..++|++++++.+.+.+
T Consensus        76 ----------~~~~~~~f~~~~~~~--~~~~---~~~~e~~~~~W~~~~~l~~~~~~  117 (120)
T cd04683          76 ----------ESRIGLFFTVRRWSG--EPRN---CEPDKCAELRWFPLDALPDDTVD  117 (120)
T ss_pred             ----------ceEEEEEEEEEeecC--cccc---CCCCcEeeEEEEchHHCcchhcc
Confidence                      011123444433221  1111   13357889999999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3e-19  Score=119.18  Aligned_cols=113  Identities=24%  Similarity=0.312  Sum_probs=70.3

Q ss_pred             eeEEEEEecCCcEEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      +|+++++++ +++||++|.+  .++.|.+|||++++||++.+||.||++||||+++... ..+... .+.++....    
T Consensus         2 ~v~~ii~~~-~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~-~~~~~~~~~----   74 (122)
T cd04673           2 AVGAVVFRG-GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG-RLLTVV-DVIERDAAG----   74 (122)
T ss_pred             cEEEEEEEC-CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec-eeEEEE-EEeeccCCC----
Confidence            456666664 7999999876  3478999999999999999999999999999995322 111111 111111000    


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                          ........++|.+....  ... .    ..+|+..++|++++++.++..
T Consensus        75 ----~~~~~~~~~~~~~~~~~--~~~-~----~~~E~~~~~w~~~~el~~~~~  116 (122)
T cd04673          75 ----RVEFHYVLIDFLCRYLG--GEP-V----AGDDALDARWVPLDELAALSL  116 (122)
T ss_pred             ----ccceEEEEEEEEEEeCC--Ccc-c----CCcccceeEEECHHHHhhCcC
Confidence                00001112233333322  222 1    225888999999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3.6e-19  Score=119.67  Aligned_cols=115  Identities=23%  Similarity=0.394  Sum_probs=75.4

Q ss_pred             cceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhh--ccC-CcccccCCccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA--EVP-NWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~--~~~-~~~~~~~~~~~~~   85 (173)
                      +.+|++++++.++++||++|... +.|.+|||++++||++.+||.||++||||+.+.....  ... ....+.++...  
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~--   78 (129)
T cd04676           2 LPGVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD--   78 (129)
T ss_pred             cceEEEEEECCCCeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC--
Confidence            45778888888899999998864 8899999999999999999999999999998532211  010 00112222111  


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                               .......+|.+.....  ....    +.+|...++|++++++.++..
T Consensus        79 ---------~~~~~~~~~~~~~~~~--~~~~----~~~e~~~~~w~~~~el~~~~~  119 (129)
T cd04676          79 ---------VRQYLDITFRCRVVGG--ELRV----GDDESLDVAWFDPDGLPPLLM  119 (129)
T ss_pred             ---------cEEEEEEEEEEEeeCC--eecC----CCCceeEEEEEChhhCccccC
Confidence                     0111233444444322  1111    225778999999999998755

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=4.5e-19  Score=119.00  Aligned_cols=54  Identities=24%  Similarity=0.413  Sum_probs=46.3

Q ss_pred             ceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~   65 (173)
                      .+|+++|+ .++++||+++.. .+.|.+|||++++|||+.+||+||++||||++..
T Consensus         2 ~~~~~vi~-~~~~vLlv~~~~-~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~   55 (125)
T cd04689           2 LRARAIVR-AGNKVLLARVIG-QPHYFLPGGHVEPGETAENALRRELQEELGVAVS   55 (125)
T ss_pred             eEEEEEEE-eCCEEEEEEecC-CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceee
Confidence            45666666 568999999865 5689999999999999999999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.81  E-value=2.9e-19  Score=124.52  Aligned_cols=109  Identities=21%  Similarity=0.266  Sum_probs=73.4

Q ss_pred             ceeEEEEEecC--CcEEEEEecC----CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711           10 PNVGVCLINSD--SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (173)
Q Consensus        10 ~~v~~~i~~~~--~~vLl~~r~~----~~~~w~lPgG~ie~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (173)
                      .+|.+++.+.+  ++|||++|..    .+|.|++|||++++| |++.+||+||++||||+++..+.. +.....+.... 
T Consensus         3 ~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~-l~~~~~~~~~~-   80 (157)
T cd03426           3 AAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEV-LGRLPPYYTRS-   80 (157)
T ss_pred             eEEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEE-EEECCCccccC-
Confidence            35566666665  6899999986    468999999999999 999999999999999998543221 11111110000 


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                                    ....++|++..... ....    .+++|+.++.|++++++.+.
T Consensus        81 --------------~~~v~~~~~~~~~~-~~~~----~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          81 --------------GFVVTPVVGLVPPP-LPLV----LNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             --------------CCEEEEEEEEECCC-CCCC----CCHHHhheeEEEcHHHHhCc
Confidence                          11234555555442 1222    23368999999999999985

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=5.9e-19  Score=117.91  Aligned_cols=112  Identities=22%  Similarity=0.302  Sum_probs=70.7

Q ss_pred             eEEEEEecC---CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           12 VGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        12 v~~~i~~~~---~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      +++++++.+   +++||+++.+. +.|.+|||+++.|||+.+||+||++||||+........+.. ..+.++...     
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~~~-~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~-~~~~~~~~~-----   75 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRRT-GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGR-FEYRKRSKN-----   75 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEecCC-CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEE-EEeeecCCC-----
Confidence            455555543   67999998763 78999999999999999999999999999984322122221 112111100     


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                           .......++|.+......  ...    +..++..++|++++++.+++.
T Consensus        76 -----~~~~~~~~~f~~~~~~~~--~~~----~~~e~~~~~W~~~~ea~~~~~  117 (122)
T cd04666          76 -----RPPRCEVAVFPLEVTEEL--DEW----PEMHQRKRKWFSPEEAALLVE  117 (122)
T ss_pred             -----CCceEEEEEEEEEEeccc--cCC----cccCceEEEEecHHHHHHhcC
Confidence                 001112355555554321  111    114677899999999988764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=1.4e-18  Score=119.02  Aligned_cols=123  Identities=21%  Similarity=0.314  Sum_probs=75.8

Q ss_pred             eeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhh---hccCCcccccCCccc
Q 030711           11 NVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII---AEVPNWLTYDFPPAV   83 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~---~~~~~~~~~~~~~~~   83 (173)
                      .|++++++.++++||++|..    ++|.|.+|||++++||++.+||+||+.||+|+......   ..+. ...+.|+...
T Consensus         3 ~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~-~~~~~~~~~~   81 (143)
T cd04694           3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLG-LWESVYPPLL   81 (143)
T ss_pred             EEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEe-eecccccccc
Confidence            56778889999999999974    46899999999999999999999999999999853221   1111 0111222111


Q ss_pred             ccccccccCCccccceEEEEEEEEccCcc-ccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           84 KTKVNRLWGGEWHGQAQKWFLMKLTNDES-EINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                      ...       .....+..+|++....... .......+.++|+.+++|++++++.+++.
T Consensus        82 ~~~-------~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~  133 (143)
T cd04694          82 SRG-------LPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVS  133 (143)
T ss_pred             CCC-------cccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHH
Confidence            000       0000112333333222111 11111112346999999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=4.6e-19  Score=118.67  Aligned_cols=108  Identities=22%  Similarity=0.356  Sum_probs=71.5

Q ss_pred             eeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      .+++++++.++++||++|.+.  ++.|.+|||++++||++.+||+||++||||+.+... ..+..   ...+.       
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~-~~~~~---~~~~~-------   70 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT-TLLSV---EEQGG-------   70 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc-eEEEE---EccCC-------
Confidence            356677888899999998753  479999999999999999999999999999985322 11111   11000       


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA  140 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  140 (173)
                              +....+|.+...+.  ...... .+..|+.+++|+++++++..+
T Consensus        71 --------~~~~~~f~a~~~~g--~~~~~~-~~~~e~~~~~W~~~~el~~~~  111 (123)
T cd04671          71 --------SWFRFVFTGNITGG--DLKTEK-EADSESLQARWYSNKDLPLPL  111 (123)
T ss_pred             --------eEEEEEEEEEEeCC--eEccCC-CCCcceEEEEEECHHHCCCcc
Confidence                    01124454444432  222111 123577899999999995433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=9.8e-19  Score=117.84  Aligned_cols=122  Identities=20%  Similarity=0.202  Sum_probs=72.4

Q ss_pred             cceeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      |.+++++|++ ++++||++|... .+.|.+|||++++|||+.+||+||+.||||+.+... .... ...+......    
T Consensus         1 r~~a~~iv~~-~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~-~~~~-~~~~~~~~~~----   73 (128)
T cd04687           1 RNSAKAVIIK-NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIG-PLLF-VREYIGHNPT----   73 (128)
T ss_pred             CcEEEEEEEE-CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccC-cEEE-EEEEeccCcc----
Confidence            4566667665 589999998753 368999999999999999999999999999995321 1100 0111110000    


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                        .+.....+...++|.+........ .... .+..+...++|++++++.++..
T Consensus        74 --~~~~~~~~~i~~~f~~~~~~~~~~-~~~~-~~~~~~~~~~W~~~~~l~~~~~  123 (128)
T cd04687          74 --SELPGHFHQVELMFECKIKSGTPA-KTPS-KPDPNQIGVEWLKLKELGDIPL  123 (128)
T ss_pred             --ccCCCceeEEEEEEEEEECCCCcc-cccC-CCCCCEEeeEEEcHHHhCcccc
Confidence              000011122335555555433211 1111 1113456899999999988643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=5e-19  Score=119.91  Aligned_cols=118  Identities=28%  Similarity=0.447  Sum_probs=77.7

Q ss_pred             ceeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCC-cccccCCcccc
Q 030711           10 PNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPN-WLTYDFPPAVK   84 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~-~~~~~~~~~~~   84 (173)
                      +++.+++++.+++|||+++..    .++.|.+|||+++.||++.+||.||+.||||+....+...+.. ...+.+...  
T Consensus         1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~--   78 (133)
T cd04685           1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGV--   78 (133)
T ss_pred             CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCc--
Confidence            468889999999999998875    2469999999999999999999999999999985232222110 001111111  


Q ss_pred             cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                                ...+..++|++...............+..++..++|++++++.+.
T Consensus        79 ----------~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          79 ----------DGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             ----------cceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence                      111235677777764322211111122235668999999999885

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=3.5e-19  Score=118.96  Aligned_cols=111  Identities=21%  Similarity=0.391  Sum_probs=73.5

Q ss_pred             eeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      .++++|+++++++||++|... .+.|.+|||++++|||+.+||+||++||||+.+ .+...+.   .+.++.        
T Consensus         2 ~~~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~-~~~~~~~---~~~~~~--------   69 (121)
T cd04669           2 RASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV-RVEEIFL---IVNQNG--------   69 (121)
T ss_pred             ceEEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeE-eeeeEEE---EEeeCC--------
Confidence            356677887799999998753 368999999999999999999999999999995 3222221   111111        


Q ss_pred             ccCCccccceEEEEEEEEccCccccccC---CCCCCcccceeeEeCHHHHHHhhh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLA---NGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                              ...++|.+............   ...+..++..+.|+++++++++..
T Consensus        70 --------~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~  116 (121)
T cd04669          70 --------RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPL  116 (121)
T ss_pred             --------cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCC
Confidence                    12456666665432111100   001124566899999999998643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.80  E-value=9.1e-19  Score=120.16  Aligned_cols=114  Identities=30%  Similarity=0.451  Sum_probs=71.8

Q ss_pred             cceeEEEEEecCCcEEEEEecCCC--CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~~--~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (173)
                      ..+|.+++. .+++|||++|.+.|  |.|.+|||++|.|||+++||.||++||||+++ .....+   ..++.+...   
T Consensus        10 ~~~v~~~i~-~~~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~-~~~~~~---~v~~~~~rd---   81 (145)
T COG1051          10 LVAVGALIV-RNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRV-RVLELL---AVFDDPGRD---   81 (145)
T ss_pred             ceeeeEEEE-eCCEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcc-cceeEE---EEecCCCCC---
Confidence            344554544 44599999999865  78999999999999999999999999999994 222222   223333221   


Q ss_pred             cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                              -.+ +...+.+............   +.++...+.|+++++++.+..+
T Consensus        82 --------~r~-~~v~~~~~~~~~~g~~~~~---~~~d~~~~~~~~~~~l~~~~~~  125 (145)
T COG1051          82 --------PRG-HHVSFLFFAAEPEGELLAG---DGDDAAEVGWFPLDELPELPLP  125 (145)
T ss_pred             --------Cce-eEEEEEEEEEecCCCcccC---ChhhHhhcceecHhHccccccc
Confidence                    000 1122222222211222221   1146788999999999986544

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=6.9e-19  Score=118.27  Aligned_cols=116  Identities=19%  Similarity=0.262  Sum_probs=72.2

Q ss_pred             eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL   90 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (173)
                      .|.+++++ +++|||+++.. .+.|.+|||++++||++.+||.||+.||||+.+............+.+....       
T Consensus         3 ~v~~vi~~-~~~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~-------   73 (126)
T cd04688           3 RAAAIIIH-NGKLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKP-------   73 (126)
T ss_pred             EEEEEEEE-CCEEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcc-------
Confidence            44555554 45999998876 6799999999999999999999999999999853322211110111111110       


Q ss_pred             cCCccccceEEEEEEEEccCcccccc-CCCCCCcccceeeEeCHHHHHHhh
Q 030711           91 WGGEWHGQAQKWFLMKLTNDESEINL-ANGEADPEFAEWKWASPEEVVEQA  140 (173)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~E~~~~~W~~~~e~~~~~  140 (173)
                           .....++|.+........... ....+.+|+.++.|++++++..+.
T Consensus        74 -----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~  119 (126)
T cd04688          74 -----GHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIK  119 (126)
T ss_pred             -----cEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCc
Confidence                 112345666666543221100 001133688999999999998653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.80  E-value=5.5e-19  Score=120.34  Aligned_cols=107  Identities=26%  Similarity=0.465  Sum_probs=68.3

Q ss_pred             EEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccccc
Q 030711           14 VCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW   91 (173)
Q Consensus        14 ~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (173)
                      .+++..++++||++|...  ++.|.+|||++++||++.+||+||++||||+....... +.. ..+..+..         
T Consensus         5 ~~~i~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~-~~~~~~~~---------   73 (137)
T cd03427           5 LCFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKL-VGI-IKFPFPGE---------   73 (137)
T ss_pred             EEEEEECCEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceE-EEE-EEEEcCCC---------
Confidence            333444589999999874  68999999999999999999999999999998533222 111 11111110         


Q ss_pred             CCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           92 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                           ......+++.+........     ..+|...++|++++++.++..
T Consensus        74 -----~~~~~~~~f~~~~~~~~~~-----~~~e~~~~~W~~~~el~~~~~  113 (137)
T cd03427          74 -----EERYGVFVFLATEFEGEPL-----KESEEGILDWFDIDDLPLLPM  113 (137)
T ss_pred             -----CcEEEEEEEEECCcccccC-----CCCccccceEEcHhhcccccC
Confidence                 0112344444433222221     124557899999999987644

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=5.6e-19  Score=118.24  Aligned_cols=113  Identities=17%  Similarity=0.273  Sum_probs=72.7

Q ss_pred             ceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      ..|.++|+++ +++||+++.+ .+.|.+|||++++|||+.+||+||++||||+.. .....+.......+.... .    
T Consensus         3 ~~v~~~i~~~-~~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~-~~~~~~~~~~~~~~~~~~-~----   74 (123)
T cd04672           3 VDVRAAIFKD-GKILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV-KVRKLAAVDDRNKHHPPP-Q----   74 (123)
T ss_pred             ceEEEEEEEC-CEEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCee-eEeEEEEEeccccccCCC-C----
Confidence            4567777766 8999998876 689999999999999999999999999999985 332222221111111000 0    


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                          . ......+|.+.....  .+..     .+|...++|++++++.++..+
T Consensus        75 ----~-~~~~~~~f~~~~~~~--~~~~-----~~E~~~~~W~~~~el~~l~~~  115 (123)
T cd04672          75 ----P-YQVYKLFFLCEILGG--EFKP-----NIETSEVGFFALDDLPPLSEK  115 (123)
T ss_pred             ----c-eEEEEEEEEEEecCC--cccC-----CCceeeeEEECHHHCcccccC
Confidence                0 000123444444322  1111     147889999999999887654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.79  E-value=7.9e-19  Score=122.40  Aligned_cols=117  Identities=26%  Similarity=0.311  Sum_probs=79.0

Q ss_pred             CCccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhh-hccCC-ccccc
Q 030711            6 SGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEII-AEVPN-WLTYD   78 (173)
Q Consensus         6 ~~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~-~~~~~   78 (173)
                      ..+|++|+++|++.++++||.+|+.    +||.|++| ||+++.||  .+||+||++|||||...... ..+.. .+...
T Consensus        24 g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~  101 (158)
T TIGR02150        24 TPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRAR  101 (158)
T ss_pred             CCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEe
Confidence            4588999999999999999999885    57999998 89999999  49999999999999853321 11111 01111


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                      +++..             ....++|.+....   ....    ..+|+.++.|++++++.+++...+
T Consensus       102 ~~~g~-------------~~~~~~f~~~~~~---~~~~----~~~Ev~~~~W~~~~el~~~~~~~~  147 (158)
T TIGR02150       102 DAWGE-------------HELCPVFFARAPV---PLNP----NPEEVAEYRWVSLEELKEILKAPW  147 (158)
T ss_pred             cCCCc-------------EEEEEEEEEecCC---cccC----ChhHeeeEEEeCHHHHHHHHhcCc
Confidence            11110             0112344433322   2222    235999999999999999877543

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.3e-18  Score=117.68  Aligned_cols=115  Identities=22%  Similarity=0.382  Sum_probs=71.3

Q ss_pred             eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccc---ccCCccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLT---YDFPPAVKTKV   87 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~---~~~~~~~~~~~   87 (173)
                      +|.++|++ +++|||+++.+ .+.|.+|||++++||++.+||+||++||||+.+......+..+..   ..++..     
T Consensus         2 ~~~~ii~~-~~~vLLv~~~~-~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~-----   74 (131)
T cd04686           2 AVRAIILQ-GDKILLLYTKR-YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDA-----   74 (131)
T ss_pred             cEEEEEEE-CCEEEEEEEcC-CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCC-----
Confidence            45556665 58999999876 468999999999999999999999999999985332222221111   111111     


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                            .......++|++.+........+.. .+.+....+.|++++++.+.
T Consensus        75 ------~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~W~~~~ea~~~  119 (131)
T cd04686          75 ------DIFHMISYYYLCEVDAELGAQQLED-YEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             ------ceeEEEEEEEEEEEcCCcCCcccch-hhHhcCCCcEEecHHHHHHh
Confidence                  0112234667776654332222211 01111246899999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1e-18  Score=115.15  Aligned_cols=100  Identities=23%  Similarity=0.449  Sum_probs=68.5

Q ss_pred             EEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCCc
Q 030711           15 CLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGE   94 (173)
Q Consensus        15 ~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (173)
                      +|...++++||++|..  +.|.+|||++++||++.+||.||++||||+....+....    .+.  ..            
T Consensus         5 ~i~~~~~~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~----~~~--~~------------   64 (112)
T cd04667           5 VICRRGGRVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLF----HVD--GG------------   64 (112)
T ss_pred             EEEecCCEEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEE----EEe--CC------------
Confidence            3344678999999875  889999999999999999999999999999853322211    111  10            


Q ss_pred             cccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           95 WHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                        ....++|.+.+...  ...    ...+|+..++|++++++.++..+
T Consensus        65 --~~~~~~f~~~~~~~--~~~----~~~~e~~~~~W~~~~el~~~~~~  104 (112)
T cd04667          65 --STRHHVFVASVPPS--AQP----KPSNEIADCRWLSLDALGDLNAS  104 (112)
T ss_pred             --CEEEEEEEEEcCCc--CCC----CCchheeEEEEecHHHhhhcccc
Confidence              01234555554432  111    12258889999999999987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.79  E-value=5e-18  Score=121.27  Aligned_cols=120  Identities=21%  Similarity=0.154  Sum_probs=78.8

Q ss_pred             eeEEEEEecCCcEEEEEecCCC---CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNVP---GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~~---~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      +|.++.+++++++||+++.+.+   ..|+||||.+++||++.+||+||+.||||+.+..+...........         
T Consensus        49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~---------  119 (185)
T PRK11762         49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPS---------  119 (185)
T ss_pred             EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCC---------
Confidence            4666667778899999987633   5799999999999999999999999999999644332221111111         


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHH
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV  151 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~  151 (173)
                             +.....++|++.....  ..   ...++.|...+.|+|++++.+++..........+
T Consensus       120 -------~~~~~~~~f~a~~~~~--~~---~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d~~ti  171 (185)
T PRK11762        120 -------YFSSKMNIVLAEDLYP--ER---LEGDEPEPLEVVRWPLADLDELLARPDFSEARSV  171 (185)
T ss_pred             -------ccCcEEEEEEEEcccc--cc---CCCCCCceeEEEEEcHHHHHHHHHcCCCCcHHHH
Confidence                   1112234555443221  11   1134457778999999999999877654333333

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1e-18  Score=116.04  Aligned_cols=54  Identities=28%  Similarity=0.484  Sum_probs=47.5

Q ss_pred             eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~   65 (173)
                      .+++++++.++++||++|.. .+.|.+|||++++||++.+||+||++||||+...
T Consensus         2 ~~~~~v~~~~~~vLl~~r~~-~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~   55 (118)
T cd04690           2 IAAALILVRDGRVLLVRKRG-TDVFYLPGGKIEAGETPLQALIRELSEELGLDLD   55 (118)
T ss_pred             eEEEEEEecCCeEEEEEECC-CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccC
Confidence            35667788889999998775 5789999999999999999999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.78  E-value=2.6e-18  Score=116.70  Aligned_cols=54  Identities=39%  Similarity=0.659  Sum_probs=46.1

Q ss_pred             eeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711           11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   64 (173)
                      .++.+|++.++++||++|..   .+|.|.+|||++++||++.+||.||+.||||+.+
T Consensus         5 ~~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~   61 (135)
T PRK10546          5 DVVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEA   61 (135)
T ss_pred             EEEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcc
Confidence            34445556778999999865   3589999999999999999999999999999984

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.78  E-value=1.2e-18  Score=129.72  Aligned_cols=118  Identities=20%  Similarity=0.278  Sum_probs=78.9

Q ss_pred             ceeEEEEEecCCcEEEEEecCCC-CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           10 PNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~~-~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      ++|.+ ++..++++||+++.+.+ |.|++|||++++|||+++||+||++||||+++..+.....  ..+.+++.      
T Consensus       133 paViv-~V~~~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s--~~~~~p~~------  203 (256)
T PRK00241        133 PCIIV-AVRRGDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGS--QPWPFPHS------  203 (256)
T ss_pred             CEEEE-EEEeCCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEe--EeecCCCe------
Confidence            34443 44556899999987644 7999999999999999999999999999998644322211  12223321      


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHH
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRT  154 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~  154 (173)
                                ..+.|.+.....  .+..    +++|+.+++|+++++++.+...  ..+...+++.
T Consensus       204 ----------lm~~f~a~~~~~--~~~~----~~~Ei~~a~W~~~del~~lp~~--~sia~~li~~  251 (256)
T PRK00241        204 ----------LMLGFHADYDSG--EIVF----DPKEIADAQWFRYDELPLLPPS--GTIARRLIED  251 (256)
T ss_pred             ----------EEEEEEEEecCC--cccC----CcccEEEEEEECHHHCcccCCc--hHHHHHHHHH
Confidence                      234555555432  2322    3358899999999999876433  3456666544

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=5.4e-18  Score=114.86  Aligned_cols=109  Identities=22%  Similarity=0.413  Sum_probs=69.6

Q ss_pred             cCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhh-hhhcc-CCcccccCCcccccccccccCCcc
Q 030711           19 SDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE-IIAEV-PNWLTYDFPPAVKTKVNRLWGGEW   95 (173)
Q Consensus        19 ~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   95 (173)
                      ++..+||+++... .|.|.||||++++|||+.+||.||++||||+.+.. ++... .....+.++.....       ...
T Consensus        11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~-------~~~   83 (132)
T cd04661          11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRN-------EGI   83 (132)
T ss_pred             cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCccccc-------ccC
Confidence            3467899988753 37899999999999999999999999999997421 11111 11122333321100       011


Q ss_pred             ccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           96 HGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                      .+....+|.+.....  .....     +|+.+++|++++++.+++.
T Consensus        84 ~~~~~~~f~~~~~~g--~~~~~-----~e~~~~~W~~~~el~~~l~  122 (132)
T cd04661          84 VGAKVFFFKARYMSG--QFELS-----QNQVDFKWLAKEELQKYLN  122 (132)
T ss_pred             cccEEEEEEEEEecC--ccccC-----CCcceeEecCHHHHHhhcC
Confidence            122345666665443  22221     4789999999999999764

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=7.4e-18  Score=113.41  Aligned_cols=54  Identities=33%  Similarity=0.629  Sum_probs=47.6

Q ss_pred             eeEEEEEecCCcEEEEEecCC----CCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711           11 NVGVCLINSDSQIFVASRLNV----PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~----~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   64 (173)
                      ++.++|++.++++||++|...    +|.|.+|||++++||++.+||+||++||||+.+
T Consensus         3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~   60 (129)
T cd04699           3 AVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV   60 (129)
T ss_pred             eEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEE
Confidence            566677777799999998852    579999999999999999999999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.76  E-value=1e-17  Score=112.70  Aligned_cols=117  Identities=27%  Similarity=0.477  Sum_probs=73.2

Q ss_pred             eEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        12 v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      ++++|++.++++||++|..   .+|.|+||||++++||++.+||.||+.||||+..... ..+.. ..+.+++...    
T Consensus         7 ~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~-~~~~~-~~~~~~~~~~----   80 (129)
T PRK10776          7 AVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA-TLFEK-LEYEFPDRHI----   80 (129)
T ss_pred             EEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc-eEEEE-EEeeCCCcEE----
Confidence            3345567778999999975   3589999999999999999999999999999984321 11111 1233332110    


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHH
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF  155 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l  155 (173)
                                ...+|.+....  ...      ...|..+++|++++++.....+   .....+++.+
T Consensus        81 ----------~~~~~~~~~~~--~~~------~~~e~~~~~W~~~~~l~~~~~p---~~~~~~~~~~  126 (129)
T PRK10776         81 ----------TLWFWLVESWE--GEP------WGKEGQPGRWVSQVALNADEFP---PANEPIIAKL  126 (129)
T ss_pred             ----------EEEEEEEEEEC--Ccc------CCccCCccEEecHHHCccCCCC---cccHHHHHHH
Confidence                      11233222211  111      1136678899999999986543   4444444443

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=8.2e-18  Score=113.67  Aligned_cols=103  Identities=26%  Similarity=0.394  Sum_probs=70.0

Q ss_pred             cceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (173)
                      +.+|+++++ .++++||++|...  .|.|.+|||++++||++.+||.||++||||+++ .....+.   .+..+..    
T Consensus        13 ~~~v~~ii~-~~~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~-~~~~~~~---~~~~~~~----   83 (130)
T cd04511          13 KIIVGCVPE-WEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARV-EIDGLYA---VYSVPHI----   83 (130)
T ss_pred             cEEEEEEEe-cCCEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEE-EeeeEEE---EEecCCc----
Confidence            334444555 4589999998753  479999999999999999999999999999985 3322221   1222110    


Q ss_pred             cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHH
Q 030711           87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV  137 (173)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~  137 (173)
                                ....++|.+.+....  +..     ..|..+++|+++++++
T Consensus        84 ----------~~~~~~f~~~~~~~~--~~~-----~~e~~~~~~~~~~~l~  117 (130)
T cd04511          84 ----------SQVYMFYRARLLDLD--FAP-----GPESLEVRLFTEEEIP  117 (130)
T ss_pred             ----------eEEEEEEEEEEcCCc--ccC-----CcchhceEEECHHHCC
Confidence                      123466777665432  211     1467889999999997

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.75  E-value=2.9e-17  Score=118.46  Aligned_cols=120  Identities=13%  Similarity=0.119  Sum_probs=81.5

Q ss_pred             ceeEEEEEec-CCcEEEEEecCCC--------CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711           10 PNVGVCLINS-DSQIFVASRLNVP--------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (173)
Q Consensus        10 ~~v~~~i~~~-~~~vLl~~r~~~~--------~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (173)
                      .+|+++.+++ +++++|+++.+.+        -.|++|+|.+++||++.+||+||+.||||+.+..+......+.+.   
T Consensus        50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~sp---  126 (202)
T PRK10729         50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASP---  126 (202)
T ss_pred             CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCC---
Confidence            3566677776 4799999998854        269999999999999999999999999999965443322211111   


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCch
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRP  146 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~  146 (173)
                                   .+.....++|++..+..... ......++.|...+.|+|++++.+++.+....
T Consensus       127 -------------g~~~e~~~~fla~~~~~~~~-~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~  178 (202)
T PRK10729        127 -------------GGTSERSSIMVGEVDATTAS-GIHGLADENEDIRVHVVSREQAYQWVEEGKID  178 (202)
T ss_pred             -------------CcCceEEEEEEEEEcchhcc-cCCCCCCCCCceEEEEEcHHHHHHHHHcCCCC
Confidence                         12223456777765332111 11112345677889999999999998776544

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.75  E-value=2.3e-17  Score=117.58  Aligned_cols=120  Identities=19%  Similarity=0.251  Sum_probs=80.5

Q ss_pred             cceeEEEEEecC-CcEEEEEecCC--------CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccC
Q 030711            9 RPNVGVCLINSD-SQIFVASRLNV--------PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDF   79 (173)
Q Consensus         9 ~~~v~~~i~~~~-~~vLl~~r~~~--------~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   79 (173)
                      ..+|++++++.+ +++||+++.+.        +..|++|+|++++||++++||+||+.||||+.+..+......   +..
T Consensus        44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~---~~~  120 (185)
T TIGR00052        44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSF---YSS  120 (185)
T ss_pred             CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEE---EcC
Confidence            346666777654 78999998762        347999999999999999999999999999996443322211   111


Q ss_pred             CcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCch
Q 030711           80 PPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRP  146 (173)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~  146 (173)
                      +             .......++|++........ . ..+.+++|.....|++++++.+++.+....
T Consensus       121 ~-------------g~~~~~~~~f~a~~~~~~~~-~-~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~  172 (185)
T TIGR00052       121 P-------------GGVTELIHLFIAEVDDNQAA-G-IGGGADEEEIEVLHLVFSQALQWIKEGKID  172 (185)
T ss_pred             C-------------CCCcEEEEEEEEEEchhhcC-C-CCCCCCccceEEEEeCHHHHHHHHHcCCCC
Confidence            1             12223456777776543211 1 112233566789999999999998776543

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=1e-16  Score=114.08  Aligned_cols=123  Identities=20%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             CCccceeEEE--EEecC--CcEEEEEecC----CCCeE-ECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhh--ccCCc
Q 030711            6 SGYRPNVGVC--LINSD--SQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA--EVPNW   74 (173)
Q Consensus         6 ~~~~~~v~~~--i~~~~--~~vLl~~r~~----~~~~w-~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~--~~~~~   74 (173)
                      .-+|++|.+.  +.|.+  +++++.+|+.    +||.| .+|+|++++||++.+||+||+.||||++...+..  .+.. 
T Consensus        29 g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~-  107 (180)
T cd03676          29 GLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGV-  107 (180)
T ss_pred             CceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccE-
Confidence            3488888875  44554  7899999985    68999 5999999999999999999999999998543321  1110 


Q ss_pred             ccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711           75 LTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY  143 (173)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  143 (173)
                      ..+.+...         ...+.....++|.+..+.. ....    .+++|+.++.|++++++.+++...
T Consensus       108 ~~~~~~~~---------~~~~~~e~~~~f~~~~~~~-~~~~----~~~~Ev~~~~~~~~~el~~~l~~g  162 (180)
T cd03676         108 VSYLREGE---------AGGLQPEVEYVYDLELPPD-FIPA----PQDGEVESFRLLTIDEVLRALKEG  162 (180)
T ss_pred             EEEEEEcC---------CCcEeeeEEEEEEEEcCCC-CeeC----CCCCcEeEEEEECHHHHHHHHHcC
Confidence            11111100         0011111234444443221 1122    234689999999999999988764

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>TIGR00586 mutt mutator mutT protein

Probab=99.73  E-value=5.8e-17  Score=108.97  Aligned_cols=56  Identities=30%  Similarity=0.462  Sum_probs=47.1

Q ss_pred             cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711            9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   64 (173)
                      +..+++++++.++++||.+|..   ..|.|++|||.++.||++.++|+||+.||||+.+
T Consensus         4 ~~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~   62 (128)
T TIGR00586         4 QQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQ   62 (128)
T ss_pred             EEEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc
Confidence            3344445567778999999975   3479999999999999999999999999999984

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.73  E-value=6.3e-17  Score=107.54  Aligned_cols=119  Identities=24%  Similarity=0.412  Sum_probs=79.0

Q ss_pred             CCccceeEEEEEecCC---cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711            6 SGYRPNVGVCLINSDS---QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (173)
Q Consensus         6 ~~~~~~v~~~i~~~~~---~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (173)
                      .++|..++|+++.-++   +|||+..++.+-.|.+|+|++|+||+..+||+||+.||.|+. +.+...+..+..+.....
T Consensus         6 ~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~-G~l~~~~~g~~~~~~~~~   84 (145)
T KOG2839|consen    6 AGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVK-GKLGRLLGGFEDFLSKKH   84 (145)
T ss_pred             CCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCce-eeeeccccchhhccChhh
Confidence            6788888887775544   789999888677899999999999999999999999999998 444443332222221111


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                      ...            .....|.......- +. ..  ....++...+|++++++.+.+.
T Consensus        85 ~~~------------~k~~~~~l~v~e~l-e~-wp--~~~~~~r~r~W~~ledA~~~~~  127 (145)
T KOG2839|consen   85 RTK------------PKGVMYVLAVTEEL-ED-WP--ESEHEFREREWLKLEDAIELCQ  127 (145)
T ss_pred             ccc------------ccceeehhhhhhhc-cc-Ch--hhhcccceeEEeeHHHHHHHHh
Confidence            100            11234444433221 11 11  1113578999999999999876

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.72  E-value=1.2e-16  Score=123.88  Aligned_cols=115  Identities=23%  Similarity=0.392  Sum_probs=73.5

Q ss_pred             ceeEEEEEecCCcEEEEEecCCC--CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhh--hhccCCcccccCCccccc
Q 030711           10 PNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~~--~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~~~~~~   85 (173)
                      .+|.++|+ .+++|||++|...+  |.|.+|||++++|||+.+||+||++||||+++...  ...+.....+.++.....
T Consensus       204 vtv~avv~-~~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~~  282 (340)
T PRK05379        204 VTVDAVVV-QSGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSLR  282 (340)
T ss_pred             eEEEEEEE-ECCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCCC
Confidence            34444544 56899999998643  68999999999999999999999999999984222  111111122333322100


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                                .....++|.+...... .....   ..+|..+++|++++++.++
T Consensus       283 ----------~~~i~~~f~~~~~~~~-~~~~~---~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        283 ----------GRTITHAFLFEFPAGE-LPRVK---GGDDADKARWVPLAELLAM  322 (340)
T ss_pred             ----------CcEEEEEEEEEecCCc-cCccC---CCCceeeEEEEEHHHhhhh
Confidence                      0112456666655332 11111   2257889999999999875

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.72  E-value=8.6e-17  Score=107.16  Aligned_cols=106  Identities=29%  Similarity=0.479  Sum_probs=69.2

Q ss_pred             EEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           13 GVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        13 ~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      .+++++.++++||++|..   .+|.|.+|||+++.+|++.++|.||+.||||+..... ..+. ...+.++..       
T Consensus         5 ~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~-~~~~-~~~~~~~~~-------   75 (124)
T cd03425           5 AAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG-ELLA-TVEHDYPDK-------   75 (124)
T ss_pred             EEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEecc-ceEE-EEEeeCCCC-------
Confidence            345566669999999874   4689999999999999999999999999999984321 1111 112222211       


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                               ....+++..........      ..|...+.|++++++.++.++
T Consensus        76 ---------~~~~~~~~~~~~~~~~~------~~e~~~~~W~~~~el~~~~~~  113 (124)
T cd03425          76 ---------RVTLHVFLVELWSGEPQ------LLEHQELRWVPPEELDDLDFP  113 (124)
T ss_pred             ---------eEEEEEEEEeeeCCCcc------cccCceEEEeeHHHcccCCCC
Confidence                     12233333322111111      146788999999999987554

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.71  E-value=4.1e-16  Score=111.51  Aligned_cols=124  Identities=17%  Similarity=0.193  Sum_probs=82.4

Q ss_pred             cceeEEEEEec-CCcEEEEEecCCC-------C--eEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccccc
Q 030711            9 RPNVGVCLINS-DSQIFVASRLNVP-------G--AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD   78 (173)
Q Consensus         9 ~~~v~~~i~~~-~~~vLl~~r~~~~-------~--~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   78 (173)
                      +.+|++++++. +++++|+++.+.+       +  .|++|+|.+++| ++++||+||+.||||+.+..+......   +.
T Consensus        45 ~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~---~~  120 (191)
T PRK15009         45 GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFEL---YM  120 (191)
T ss_pred             CCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEE---Ec
Confidence            34566677776 5799999999844       3  699999999976 699999999999999986554443222   11


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHH
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV  151 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~  151 (173)
                      .|             .++....++|++...... ... ..+.+++|...+.|+|++++.+++.+........+
T Consensus       121 sp-------------G~s~e~~~lf~a~~~~~~-~~~-~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti  178 (191)
T PRK15009        121 SP-------------GGVTELIHFFIAEYSDSQ-RAN-AGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTV  178 (191)
T ss_pred             CC-------------cccCcEEEEEEEEECchh-ccc-CCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHH
Confidence            11             222334566766653221 111 11234568889999999999999887654433333

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=7.3e-16  Score=102.11  Aligned_cols=111  Identities=29%  Similarity=0.476  Sum_probs=73.1

Q ss_pred             eeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      ++++++++.++++||++|... +|.|.+|||+++.||++.++|+||+.||+|+..........  ..+..+.        
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~--~~~~~~~--------   71 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGV--YEVESPD--------   71 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEE--EEeeccC--------
Confidence            567777888799999998863 68999999999999999999999999999998431111110  1111110        


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA  140 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  140 (173)
                          ........+|.+.+...... .    ....|....+|++++++.++.
T Consensus        72 ----~~~~~~~~~~~~~~~~~~~~-~----~~~~e~~~~~w~~~~~l~~~~  113 (123)
T cd02883          72 ----EGEHAVVFVFLARLVGGEPT-L----LPPDEISEVRWVTLDELPALA  113 (123)
T ss_pred             ----CCceEEEEEEEEEeCCCCcC-C----CCCCccceEEEEcHHHCcccc
Confidence                00111234555555443221 0    122477889999999998754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.68  E-value=6.9e-16  Score=110.33  Aligned_cols=112  Identities=15%  Similarity=0.073  Sum_probs=71.0

Q ss_pred             ccceeEEEEEe--cCCcEEEEEecC----CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711            8 YRPNVGVCLIN--SDSQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (173)
Q Consensus         8 ~~~~v~~~i~~--~~~~vLl~~r~~----~~~~w~lPgG~ie~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (173)
                      .+.+++++.+.  .++.+|+++|..    .+|.|+||||.+|++ |++.+||+||+.||||+....+.........+...
T Consensus        29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~  108 (190)
T PRK10707         29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSST  108 (190)
T ss_pred             CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccC
Confidence            45555555453  335788888663    357899999999985 68999999999999999864433222111011111


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA  140 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  140 (173)
                                      +.....+++...... ..    ..+++|+..+.|+|++++.++.
T Consensus       109 ----------------~~~~~~~v~~~~~~~-~~----~~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707        109 ----------------GYQVTPVVGIIPPDL-PY----RANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             ----------------CcEEEEEEEEECCCC-CC----CCChhhhheEEEEeHHHHhCcc
Confidence                            112344444444321 11    1344789999999999998863

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=9.1e-16  Score=101.95  Aligned_cols=54  Identities=37%  Similarity=0.640  Sum_probs=42.9

Q ss_pred             eeEEEEEecC---CcEEEEEec------CCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711           11 NVGVCLINSD---SQIFVASRL------NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (173)
Q Consensus        11 ~v~~~i~~~~---~~vLl~~r~------~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   64 (173)
                      ++++++++.+   .+|||++|.      ...+.|++|||+++.||++.+||+||++||||+.+
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~   64 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCV   64 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcc
Confidence            3455555332   368999852      23578999999999999999999999999999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.65  E-value=4.8e-15  Score=109.38  Aligned_cols=142  Identities=21%  Similarity=0.303  Sum_probs=81.3

Q ss_pred             CCccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCC-----------------HHHHHHHHHHHHhCCc
Q 030711            6 SGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGED-----------------PKLAAMRELREETGIV   63 (173)
Q Consensus         6 ~~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~-----------------~~~aa~RE~~EEtGl~   63 (173)
                      ..+|+++.++|+|.++++||++|+.    +||.|... +||+..||+                 ..+||+||+.||+||.
T Consensus        53 gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~  132 (247)
T PLN02552         53 GLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP  132 (247)
T ss_pred             CceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence            4699999999999999999999985    78999777 465555432                 6789999999999998


Q ss_pred             hhhhh-hccCCcccccCCcccc--cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711           64 SAEII-AEVPNWLTYDFPPAVK--TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA  140 (173)
Q Consensus        64 ~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  140 (173)
                      ...+. ..+....++.|.....  ....    +.+......++++........+.+    +++|+.+++|++++++.+++
T Consensus       133 ~~~~~~~~l~~~~~~~y~~~~~~~~~~~----~~~~E~e~~~v~~~~~~~~~~l~l----q~eEV~~~~wvs~~el~~~~  204 (247)
T PLN02552        133 AEDVPVDQFTFLTRLHYKAADDVTHGPD----GKWGEHELDYLLFIRPVRDVKVNP----NPDEVADVKYVNREELKEMM  204 (247)
T ss_pred             ccccccccceeeeEEEEecccccccccC----CCccceEEEEEEEEEecCCCcccC----CHHHhheEEEEeHHHHHHHH
Confidence            43211 0111111111111100  0000    000000111222222222223333    34799999999999999986


Q ss_pred             hhc----CchHHHHHHHHH
Q 030711          141 VDY----KRPTYEEVMRTF  155 (173)
Q Consensus       141 ~~~----~~~~~~~~~~~l  155 (173)
                      ...    ..+.+..+++.+
T Consensus       205 ~~~~~~~~tpw~~~~~~~~  223 (247)
T PLN02552        205 RKESGLKLSPWFRLIVDNF  223 (247)
T ss_pred             hhcCCcccCHHHHHHHHHH
Confidence            421    124555555443

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.63  E-value=3.7e-16  Score=115.47  Aligned_cols=108  Identities=28%  Similarity=0.429  Sum_probs=78.1

Q ss_pred             cceeEEEEEecCCcEEEEEecC-CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~-~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      -++|.+++++.+. +||.++.+ .+|.|++.+|+||+|||+++|+.||++||+|+.+.++.+...+  .+.||++.+   
T Consensus       144 dP~vIv~v~~~~~-ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQ--PWPfP~SLM---  217 (279)
T COG2816         144 DPCVIVAVIRGDE-ILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQ--PWPFPHSLM---  217 (279)
T ss_pred             CCeEEEEEecCCc-eeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEecc--CCCCchhhh---
Confidence            3455555555544 77766665 6799999999999999999999999999999998776655443  566666543   


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                                   .-|.+.+..+  ++..    +..|+.+++||+.+++...+.
T Consensus       218 -------------igf~aey~sg--eI~~----d~~Eleda~WFs~~evl~~L~  252 (279)
T COG2816         218 -------------LGFMAEYDSG--EITP----DEGELEDARWFSRDEVLPALP  252 (279)
T ss_pred             -------------hhheeeeccc--cccC----CcchhhhccccCHhHHhhhcC
Confidence                         3444444543  3443    336999999999999666544

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=5.8e-15  Score=97.80  Aligned_cols=52  Identities=33%  Similarity=0.463  Sum_probs=43.4

Q ss_pred             eEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhh
Q 030711           12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (173)
Q Consensus        12 v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~   66 (173)
                      |.++++ .++++||+++.  .+.|.+|||++++||++.+||+||++||||+.+..
T Consensus         3 v~vi~~-~~~~vLl~~~~--~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~   54 (118)
T cd04665           3 VLVICF-YDDGLLLVRHK--DRGWEFPGGHVEPGETIEEAARREVWEETGAELGS   54 (118)
T ss_pred             EEEEEE-ECCEEEEEEeC--CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCc
Confidence            444444 45899999877  36799999999999999999999999999999633

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.61  E-value=1.8e-14  Score=99.41  Aligned_cols=105  Identities=22%  Similarity=0.245  Sum_probs=67.3

Q ss_pred             eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL   90 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (173)
                      .|.++++. ++++||+++..  ..|++|||++++|||+.+||.||++||||+.+..+.....    +......       
T Consensus        26 ~V~ii~~~-~~~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~----~~~~~~~-------   91 (156)
T TIGR02705        26 HVLVIPRY-KDQWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQ----YEVEGES-------   91 (156)
T ss_pred             EEEEEEEE-CCEEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEE----EEecCCC-------
Confidence            44444444 45898888764  4599999999999999999999999999998544332221    1111110       


Q ss_pred             cCCccccceEEEEEEEEccCccccccCCCCCCcccceee-EeCHHHHHHhhhhc
Q 030711           91 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWK-WASPEEVVEQAVDY  143 (173)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~-W~~~~e~~~~~~~~  143 (173)
                           .....++|++......   ..      +|..+.. +++++++.+++...
T Consensus        92 -----~~~~~~vf~A~~~~~~---~~------~e~~E~~~~~~~~~~~~~~~~g  131 (156)
T TIGR02705        92 -----TDFVKDVYFAEVSALE---SK------DDYLETKGPVLLQEIPDIIKAD  131 (156)
T ss_pred             -----cEEEEEEEEEEEeccc---cC------CCceeeEeEEEHHHHHHHHhcC
Confidence                 1112356666665321   11      3545555 89999999876554

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PLN02791 Nudix hydrolase homolog

Probab=99.61  E-value=1.8e-14  Score=120.32  Aligned_cols=123  Identities=21%  Similarity=0.373  Sum_probs=80.9

Q ss_pred             CCccceeEEEEEec-CCcEEEEEecC----CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCCchhh-hhhccCCccccc
Q 030711            6 SGYRPNVGVCLINS-DSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAE-IIAEVPNWLTYD   78 (173)
Q Consensus         6 ~~~~~~v~~~i~~~-~~~vLl~~r~~----~~~~w~l-PgG~ie~gE~~~~aa~RE~~EEtGl~~~~-~~~~~~~~~~~~   78 (173)
                      ..+|++|.|+|++. ++++||++|+.    +||.|++ ||||++.||+..+||+||+.||+||.... .+..+.. ....
T Consensus        29 Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~-~~~~  107 (770)
T PLN02791         29 GDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFV-FLQE  107 (770)
T ss_pred             CCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeee-EEEE
Confidence            45899999999997 68999999985    7899999 69999999999999999999999998421 1111110 0000


Q ss_pred             CCcccccccccccCCcc-ccceEEEEEEEEccCcc--ccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           79 FPPAVKTKVNRLWGGEW-HGQAQKWFLMKLTNDES--EINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                      ..         ...+.+ .....++|++.......  ++.    ++++|+.++.|++++++.+++..
T Consensus       108 ~~---------~~~g~~~e~E~~~VYlv~~~~~~p~~~~~----lq~eEV~~v~wvsl~El~~~l~~  161 (770)
T PLN02791        108 CV---------INDGKFINNEYNDVYLVTTLDPIPLEAFT----LQESEVSAVKYMSIEEYKSALAK  161 (770)
T ss_pred             ee---------ccCCCcceeeEEEEEEEEECCCCCcccCC----CChhhhheeEEEcHHHHHHHHhc
Confidence            00         000100 01123445444322211  222    24479999999999999987643

>PRK08999 hypothetical protein; Provisional

Probab=99.61  E-value=8.4e-15  Score=112.71  Aligned_cols=56  Identities=34%  Similarity=0.531  Sum_probs=47.4

Q ss_pred             cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711            9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   64 (173)
                      +..+++++++.++++||.+|..   .+|.|.+|||++++||++.++|.||++||||+.+
T Consensus         5 ~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~   63 (312)
T PRK08999          5 IHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEV   63 (312)
T ss_pred             eEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCce
Confidence            3344445667779999999875   4589999999999999999999999999999984

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1.9e-14  Score=95.22  Aligned_cols=49  Identities=37%  Similarity=0.358  Sum_probs=40.1

Q ss_pred             EEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711           15 CLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (173)
Q Consensus        15 ~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   64 (173)
                      ++... +.+||++|...  .|.|.||||++++||++.+||.||+.||||+.+
T Consensus        10 vl~~~-~~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~   60 (118)
T cd04674          10 LLPVD-DGLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAV   60 (118)
T ss_pred             EEEEC-CCEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence            33344 45777777653  379999999999999999999999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02709 nudix hydrolase

Probab=99.57  E-value=3.6e-14  Score=102.75  Aligned_cols=97  Identities=21%  Similarity=0.254  Sum_probs=66.8

Q ss_pred             CcEEEEEecC----CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCCchh--hhhhccCCcccccCCcccccccccccCC
Q 030711           21 SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSA--EIIAEVPNWLTYDFPPAVKTKVNRLWGG   93 (173)
Q Consensus        21 ~~vLl~~r~~----~~~~w~lPgG~ie~g-E~~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (173)
                      -++||++|..    .+|.|+||||++|++ +++.+||+||+.||+||...  .++..+..+.   .+.            
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~---t~s------------  115 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFV---NKK------------  115 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeE---CCC------------
Confidence            3789999986    468999999999996 57899999999999999843  3333332211   111            


Q ss_pred             ccccceEEEEEEEEccC-ccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           94 EWHGQAQKWFLMKLTND-ESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        94 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                         +...+.|++.+... .....    +.++|+..+.|+|++.+.+.
T Consensus       116 ---g~~V~P~V~~~~~~~~~~~~----~np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        116 ---GMSVAPVIGFLHDKKAFKPL----PNPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             ---CCEEEEEEEEecCCCCcccc----CChhhhheeEEecHHHHhCC
Confidence               11346677766532 12221    23469999999999999754

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.57  E-value=4.4e-14  Score=94.18  Aligned_cols=51  Identities=33%  Similarity=0.546  Sum_probs=40.5

Q ss_pred             eEEEEEecCC--cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711           12 VGVCLINSDS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (173)
Q Consensus        12 v~~~i~~~~~--~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   64 (173)
                      |.+++.+.++  ++|+.+...  +.|.+|||.+++||++.+||+||++||||+.+
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            4455555554  566665543  45999999999999999999999999999985

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.56  E-value=4.2e-14  Score=100.20  Aligned_cols=41  Identities=29%  Similarity=0.489  Sum_probs=37.0

Q ss_pred             cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCc
Q 030711           22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV   63 (173)
Q Consensus        22 ~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~   63 (173)
                      ++|+++|.. .|.|.||||++++||++.+||.||+.||||+.
T Consensus        50 ~vLl~~r~~-~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~   90 (186)
T cd03670          50 QFVAIKRPD-SGEWAIPGGMVDPGEKISATLKREFGEEALNS   90 (186)
T ss_pred             EEEEEEeCC-CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence            678888865 68999999999999999999999999999764

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.54  E-value=2.7e-15  Score=111.47  Aligned_cols=111  Identities=27%  Similarity=0.342  Sum_probs=72.2

Q ss_pred             ccceeEEEEEecCCcEEEEEec-CC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccccc-CCcccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRL-NV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD-FPPAVK   84 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~-~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~-~~~~~~   84 (173)
                      .-+.|.+++++++++.+|..|+ ++ +|.|..++|++|+|||++|||+||++||||+++..+...-..  .+. +|...+
T Consensus       186 ~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQ--PWP~~p~SLM  263 (345)
T KOG3084|consen  186 TDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQ--PWPLMPQSLM  263 (345)
T ss_pred             CCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecC--CCCCCchHHH
Confidence            3456667888888766554444 44 489999999999999999999999999999997665432211  222 332221


Q ss_pred             cccccccCCccccceEEEEEEEEccCccccccCCCCCCc-ccceeeEeCHHHHHHhhh
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP-EFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-E~~~~~W~~~~e~~~~~~  141 (173)
                                      +..+.... .+..+++    +.+ |..+++||+.+++.+.+.
T Consensus       264 ----------------Igc~ala~-~~~~I~v----d~dlEleDaqwF~r~ev~~aL~  300 (345)
T KOG3084|consen  264 ----------------IGCLALAK-LNGKISV----DKDLELEDAQWFDREEVKSALT  300 (345)
T ss_pred             ----------------HHHHHHHh-hCCcccc----CcchhhhhcccccHHHHHHHHH
Confidence                            11111111 1123333    334 889999999999987654

>PLN03143 nudix hydrolase; Provisional

Probab=99.50  E-value=4.6e-13  Score=100.90  Aligned_cols=126  Identities=20%  Similarity=0.220  Sum_probs=73.8

Q ss_pred             eeEEEEE-ecCCc--EEEEEecCCC---CeEECCCcccCC-CCCHHHHHHHHHHHHhCCch--hhhhhccCCcccccCCc
Q 030711           11 NVGVCLI-NSDSQ--IFVASRLNVP---GAWQMPQGGIED-GEDPKLAAMRELREETGIVS--AEIIAEVPNWLTYDFPP   81 (173)
Q Consensus        11 ~v~~~i~-~~~~~--vLl~~r~~~~---~~w~lPgG~ie~-gE~~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~   81 (173)
                      +|+++++ +.+++  ++|+++.+.+   -.|++|+|.+|+ +|++.+||+||+.||||+.+  ..+........    +.
T Consensus       130 aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~----~~  205 (291)
T PLN03143        130 AVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLD----PS  205 (291)
T ss_pred             eEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccc----cC
Confidence            5666554 44455  8999988844   389999999997 58999999999999999973  22322211100    00


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccc---c--CCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEIN---L--ANGEADPEFAEWKWASPEEVVEQAVDY  143 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~E~~~~~W~~~~e~~~~~~~~  143 (173)
                      ..   ...+..........++|++........+.   .  ..-.++.|...+.|++++++..+..+.
T Consensus       206 ~g---~~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~  269 (291)
T PLN03143        206 TG---CRMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTADA  269 (291)
T ss_pred             cC---ceEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHhH
Confidence            00   00011122223334555544443221111   0  111244677889999999999887543

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.42  E-value=3.8e-12  Score=86.82  Aligned_cols=55  Identities=36%  Similarity=0.591  Sum_probs=43.3

Q ss_pred             eeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHH-HHHHHHHHHhCCchh
Q 030711           11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKL-AAMRELREETGIVSA   65 (173)
Q Consensus        11 ~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~-aa~RE~~EEtGl~~~   65 (173)
                      .+.+++.... .++|+.++....+.|.+|||++++||++.+ ||+||++||||+...
T Consensus        13 ~~~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          13 AVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK   69 (161)
T ss_pred             eEEEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence            3333333333 788888888744599999999999998888 999999999999854

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=99.41  E-value=1.1e-12  Score=89.86  Aligned_cols=119  Identities=20%  Similarity=0.282  Sum_probs=86.7

Q ss_pred             ccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchh--hhhhccCCcccccCC
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYDFP   80 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~   80 (173)
                      .|++++++|+|.+|++||.+|..    +|+.|.-. .||--+||+..+||+|-+..|+||+..  .....+   -.+.|.
T Consensus        32 LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il---~rf~Yr  108 (185)
T COG1443          32 LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEIL---PRFRYR  108 (185)
T ss_pred             HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccc---cceEEe
Confidence            79999999999999999999874    78999887 688889999999999999999999954  222222   233333


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY  143 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  143 (173)
                      .....         -.+.+.+.+++.+.... .+..    .++|+.+++|++++++.+++...
T Consensus       109 A~~~~---------~~~E~Eic~V~~~~~~~-~~~~----npdEV~~~~wv~~e~l~~~~~~~  157 (185)
T COG1443         109 AADPD---------GIVENEICPVLAARLDS-ALDP----NPDEVMDYRWVSPEDLKEMVDAT  157 (185)
T ss_pred             ccCCC---------CcceeeeeeEEEEeecC-CCCC----ChHHhhheeccCHHHHHHhhcCC
Confidence            22211         11234566666666543 2222    23799999999999999987654

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=99.38  E-value=1.7e-12  Score=96.64  Aligned_cols=121  Identities=25%  Similarity=0.419  Sum_probs=84.8

Q ss_pred             CCCccceeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711            5 PSGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (173)
Q Consensus         5 ~~~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (173)
                      ++..+..++.+|+|.+++||+++...    ..|.|.+|+|.++++|++.++|+||++||||++... ...+..-..+.-.
T Consensus       111 ~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef-~eVla~r~~H~~~  189 (295)
T KOG0648|consen  111 NASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEF-VEVLAFRRAHNAT  189 (295)
T ss_pred             chhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhh-hhHHHHHhhhcch
Confidence            34577788889999999999987643    457899999999999999999999999999997321 1111110111110


Q ss_pred             cccccccccccCCccc-cceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           81 PAVKTKVNRLWGGEWH-GQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                                    +. .+...|+++.+..-..+++.+.    -|+..++|+++++..+....+.
T Consensus       190 --------------~~~~ksd~f~~c~L~p~s~~i~~~~----~ei~~~~Wmp~~e~v~qp~~~~  236 (295)
T KOG0648|consen  190 --------------FGLIKSDMFFTCELRPRSLDITKCK----REIEAAAWMPIEEYVSQPLVHP  236 (295)
T ss_pred             --------------hhcccccceeEEEeeccccccchhH----HHHHHHhcccHHHhhccccccc
Confidence                          00 1235788888876555555433    5888889999999988765443

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.33  E-value=3.9e-11  Score=83.83  Aligned_cols=117  Identities=26%  Similarity=0.331  Sum_probs=80.4

Q ss_pred             eeEEEE-EecCC--cEEEEEecCCC-C--eEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccc
Q 030711           11 NVGVCL-INSDS--QIFVASRLNVP-G--AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (173)
Q Consensus        11 ~v~~~i-~~~~~--~vLl~~r~~~~-~--~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (173)
                      +|+++. +..+|  .++|+++.+-| |  ..++|+|-++.||+++.||+||++||||+. .++...-..  .+..     
T Consensus        75 gVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~~s~~--~f~D-----  146 (225)
T KOG3041|consen   75 GVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDMVSPT--VFLD-----  146 (225)
T ss_pred             eEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeeecccc--EEcC-----
Confidence            456543 33344  57888888855 3  789999999999999999999999999998 443222111  1111     


Q ss_pred             cccccccCCccccceEEEEEEEEccCccc-cccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESE-INLANGEADPEFAEWKWASPEEVVEQAVDY  143 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  143 (173)
                              .+++.+...+.++.++++..+ .+..++.+..|..++.-++++++.+.+.+.
T Consensus       147 --------PGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l  198 (225)
T KOG3041|consen  147 --------PGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADL  198 (225)
T ss_pred             --------CCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhh
Confidence                    223344466777777766432 233456777899999999999999876543

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=99.29  E-value=5.3e-11  Score=77.41  Aligned_cols=130  Identities=25%  Similarity=0.363  Sum_probs=78.7

Q ss_pred             ceeEEEEEe-cCC--cEEEEEecC------CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711           10 PNVGVCLIN-SDS--QIFVASRLN------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (173)
Q Consensus        10 ~~v~~~i~~-~~~--~vLl~~r~~------~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (173)
                      .++++++.. ..+  .|||++.-.      ..|.|++|+|....||++..||.||..||+||.+.--...++.   +..+
T Consensus         4 ~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~---~kQ~   80 (161)
T COG4119           4 LSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGS---LKQS   80 (161)
T ss_pred             ccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhh---hccC
Confidence            344555443 234  345555331      3478999999999999999999999999999985221111111   1111


Q ss_pred             cccccccccccCCccccceEEEEEEEEcc-------CccccccCC--C--CCCcccceeeEeCHHHHHHhhhhcCchHHH
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTN-------DESEINLAN--G--EADPEFAEWKWASPEEVVEQAVDYKRPTYE  149 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~--~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~  149 (173)
                      .               +..++.|....+.       ..++..++.  +  ...+|+..+.||++.++...+...+++++.
T Consensus        81 G---------------GKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~gQRpfld  145 (161)
T COG4119          81 G---------------GKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKGQRPFLD  145 (161)
T ss_pred             C---------------CcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhccchHHH
Confidence            0               1122333332221       111222111  1  345689999999999999998888888888


Q ss_pred             HHHHHHhh
Q 030711          150 EVMRTFRP  157 (173)
Q Consensus       150 ~~~~~l~~  157 (173)
                      ++.++...
T Consensus       146 rL~a~~~a  153 (161)
T COG4119         146 RLMAHAVA  153 (161)
T ss_pred             HHHHHhcc
Confidence            88765433

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=99.17  E-value=4.4e-10  Score=80.79  Aligned_cols=110  Identities=15%  Similarity=0.209  Sum_probs=67.1

Q ss_pred             ceeEEEEEec-C--CcEEEEEecC----CCCeEECCCcccCCC-CCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCc
Q 030711           10 PNVGVCLINS-D--SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (173)
Q Consensus        10 ~~v~~~i~~~-~--~~vLl~~r~~----~~~~w~lPgG~ie~g-E~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (173)
                      .+|.+.+++. +  -.|||.+|++    .+|.-.||||..++. .+-.+||.||+.||.|++. .....++.......+ 
T Consensus        44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~-~~~~~~g~l~~~~~r-  121 (246)
T KOG3069|consen   44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP-ELVDVLGALPPFVLR-  121 (246)
T ss_pred             ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCH-HHhhhhhhccceeec-
Confidence            3455556655 2  3688999886    568899999999985 5778899999999999994 222222221111111 


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCc--cccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDE--SEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                      ....              ...+++......  ....++.    .|+..+.|+|++++..-
T Consensus       122 ~~~~--------------v~p~v~~l~~~~~l~~~~ln~----gEv~~~F~VPL~~ll~~  163 (246)
T KOG3069|consen  122 SGWS--------------VFPVVGFLSDKKILPSLRLNS----GEVESAFWVPLTDLLLP  163 (246)
T ss_pred             cCcc--------------cceeEEEEecccccccccCCc----hheeeeeeeeHHHHhhh
Confidence            0000              122222222211  2223322    58999999999999864

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.09  E-value=3.8e-09  Score=69.58  Aligned_cols=51  Identities=22%  Similarity=0.504  Sum_probs=41.6

Q ss_pred             eEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCC
Q 030711           12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGI   62 (173)
Q Consensus        12 v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl   62 (173)
                      +.++++..++++||.+|..   .+|.|+||+|.++.+++..++..|++.++.++
T Consensus         5 ~~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~   58 (118)
T cd03431           5 IAVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL   58 (118)
T ss_pred             EEEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc
Confidence            3444455578999999975   46899999999999999999999999888764

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>PLN02839 nudix hydrolase

Probab=98.74  E-value=1.6e-07  Score=72.56  Aligned_cols=106  Identities=19%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             CcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhh--hhccCCcccccCCcccccccccccCC
Q 030711           21 SQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPAVKTKVNRLWGG   93 (173)
Q Consensus        21 ~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (173)
                      .++.+.+|+.    +||+|+.- +|++..||++.++++||+.||.||...-.  ....+ ..+|.+...          .
T Consensus       218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G-~VsY~~~~~----------~  286 (372)
T PLN02839        218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVG-AVSYMDIDQ----------Y  286 (372)
T ss_pred             eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeE-EEEEEEEcC----------C
Confidence            4577777774    78988766 89999999999999999999999984211  11111 111211110          0


Q ss_pred             ccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           94 EWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                      ..  +....|+|-+.-.. ++.+  ...+.|+..+.+++++++.+.+..
T Consensus       287 g~--~~evly~YDLeLP~-df~P--~~qDGEVe~F~Lm~v~EV~~~l~~  330 (372)
T PLN02839        287 CF--KRDVLFCYDLELPQ-DFVP--KNQDGEVESFKLIPVAQVANVIRK  330 (372)
T ss_pred             cc--ccCEEEEeeeecCC-cccc--CCCccceeEEEEecHHHHHHHHHc
Confidence            11  11234444433221 2211  123479999999999999988754

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.73  E-value=2.3e-08  Score=70.27  Aligned_cols=136  Identities=22%  Similarity=0.353  Sum_probs=86.3

Q ss_pred             CccceeEEEEEecCCcEEEEEecC----CCCeEECC-----C---cccCC--CCCHHHHHHHHHHHHhCCchhhhh-hcc
Q 030711            7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-----Q---GGIED--GEDPKLAAMRELREETGIVSAEII-AEV   71 (173)
Q Consensus         7 ~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-----g---G~ie~--gE~~~~aa~RE~~EEtGl~~~~~~-~~~   71 (173)
                      -.|++++|+++|.++++||.+|+.    .|+.|.-.     -   |..+.  +.....||+|-+.-|+||+...+. ..+
T Consensus        50 lLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~  129 (225)
T KOG0142|consen   50 LLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEF  129 (225)
T ss_pred             hhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHc
Confidence            378999999999999999999885    56666432     1   22222  236788999999999999843322 122


Q ss_pred             CCcccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCc---hHH
Q 030711           72 PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKR---PTY  148 (173)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~---~~~  148 (173)
                      .+...+.|.....         +..|.+.+-|+..+.. +..++    +.++|+.+++|++.+++..++.....   +-+
T Consensus       130 ~~ltrihYkA~sd---------g~wGEhEiDYiL~~~~-~~~~n----PnpnEv~e~ryvs~eelkel~~~~~~~~TPWf  195 (225)
T KOG0142|consen  130 NFLTRIHYKAPSD---------GIWGEHEIDYILFLVK-DVTLN----PNPNEVSEIRYVSREELKELVAKASAGFTPWF  195 (225)
T ss_pred             ccceeeeeecCCC---------CCcccceeeEEEEEec-cCCCC----CChhhhhHhheecHHHHHHHHhccccCCChHH
Confidence            3333444433321         2224455556555554 22222    34479999999999999998765432   455


Q ss_pred             HHHHHHHh
Q 030711          149 EEVMRTFR  156 (173)
Q Consensus       149 ~~~~~~l~  156 (173)
                      ..+.+.+.
T Consensus       196 kli~~~~l  203 (225)
T KOG0142|consen  196 KLISENFL  203 (225)
T ss_pred             HHHHHHHH
Confidence            55555543

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.24  E-value=2.5e-06  Score=56.05  Aligned_cols=102  Identities=19%  Similarity=0.299  Sum_probs=50.6

Q ss_pred             EEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711           14 VCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL   90 (173)
Q Consensus        14 ~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (173)
                      +++++.++++||.+|..   ..|.|+||.--.+. ++..+.+.+.+.+..|+...... .++ ...+.+++...      
T Consensus         2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~~-~v~H~fSH~~~------   72 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVE-PLG-TVKHVFSHRRW------   72 (114)
T ss_dssp             EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S--SE-EEEEE-SSEEE------
T ss_pred             EEEEEeCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhhe-ecC-cEEEEccceEE------
Confidence            57788999999999997   45899999977764 33355555555566676532111 111 12333333211      


Q ss_pred             cCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           91 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                              ...+|.+.+......          ...+..|++++++.++..+
T Consensus        73 --------~~~~~~~~~~~~~~~----------~~~~~~W~~~~~l~~~~~p  106 (114)
T PF14815_consen   73 --------TIHVYEVEVSADPPA----------EPEEGQWVSLEELDQYPLP  106 (114)
T ss_dssp             --------EEEEEEEEEE-SS--------------TTEEEEEGGGGGGS---
T ss_pred             --------EEEEEEEEecCCCCC----------CCCCcEEEEHHHHhhCCCC
Confidence                    123444444432111          2468899999999987654

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.94  E-value=6e-06  Score=62.54  Aligned_cols=102  Identities=19%  Similarity=0.368  Sum_probs=64.2

Q ss_pred             EEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCC
Q 030711           15 CLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG   93 (173)
Q Consensus        15 ~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (173)
                      .++++. .++||++..... .|.+|.|.+..+|+..++|+||+.||||.+....+..-.+ ...                
T Consensus        88 ~ild~~~sr~llv~g~qa~-sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~-Ie~----------------  149 (348)
T KOG2937|consen   88 IILDEKRSRCLLVKGWQAS-SWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-IET----------------  149 (348)
T ss_pred             hhhhhhhhhhheeeceecc-cccccCccccccchhhhcchhcccchhhcCHHHHhccccC-ccc----------------
Confidence            455554 578888877644 4999999999999999999999999999996443332111 111                


Q ss_pred             ccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHH
Q 030711           94 EWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV  137 (173)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~  137 (173)
                      ++.++..  .+|...+...+.+... ....|+..+.|..++++.
T Consensus       150 nI~dq~~--~~fIi~gvs~d~~f~~-~v~~eis~ihW~~l~~l~  190 (348)
T KOG2937|consen  150 NIRDQLV--RLFIINGVSEDTNFNP-RVRKEISKIHWHYLDHLV  190 (348)
T ss_pred             chhhcee--eeeeeccceeeeecch-hhhccccceeeeehhhhc
Confidence            1122222  3233332222222111 122588999999999994

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.84  E-value=0.00031  Score=48.14  Aligned_cols=113  Identities=19%  Similarity=0.299  Sum_probs=64.4

Q ss_pred             ccceeEEEEEecCCcEEEEEecCCC------CeEECC-CcccCCCC--CHHH-----HHHHHHHHHhCCchhhhhh--cc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNVP------GAWQMP-QGGIEDGE--DPKL-----AAMRELREETGIVSAEIIA--EV   71 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~~------~~w~lP-gG~ie~gE--~~~~-----aa~RE~~EEtGl~~~~~~~--~~   71 (173)
                      ++.-..-+++-..++||+-+|-...      +.+++- |||++.++  +..+     .+.||+.||.++.-.....  .+
T Consensus        59 ~KQ~IpYvvi~~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~l  138 (203)
T COG4112          59 TKQVIPYVVIMDEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFL  138 (203)
T ss_pred             ccccccEEEEecCCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheee
Confidence            4444454555555699999988632      467776 99999754  3332     3889999999998322211  11


Q ss_pred             CCcccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           72 PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                      +.+..  ..+ ....+          ++..+|.......+.+  ..+    .+...++|+.++++.+.
T Consensus       139 GlINd--d~n-eVgkV----------HiG~lf~~~~k~ndve--vKE----kd~~~~kwik~~ele~~  187 (203)
T COG4112         139 GLIND--DTN-EVGKV----------HIGALFLGRGKFNDVE--VKE----KDLFEWKWIKLEELEKF  187 (203)
T ss_pred             eeecC--CCc-ccceE----------EEEEEEEeecccccee--eee----cceeeeeeeeHHHHHHH
Confidence            21111  111 11111          1234455544442222  222    46678999999999983

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.81  E-value=2.4e-05  Score=56.11  Aligned_cols=39  Identities=28%  Similarity=0.549  Sum_probs=33.8

Q ss_pred             cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhC
Q 030711           22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETG   61 (173)
Q Consensus        22 ~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtG   61 (173)
                      +++.++|.. .+.|.+|||.+++||.+-.+..||+.||.=
T Consensus       140 e~vavkr~d-~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRPD-NGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecCC-CCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            456677775 678999999999999999999999999963

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=97.71  E-value=0.002  Score=44.58  Aligned_cols=134  Identities=20%  Similarity=0.276  Sum_probs=76.9

Q ss_pred             CccceeEEEEEecC---CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch-----hhhhhccCCccccc
Q 030711            7 GYRPNVGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-----AEIIAEVPNWLTYD   78 (173)
Q Consensus         7 ~~~~~v~~~i~~~~---~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~-----~~~~~~~~~~~~~~   78 (173)
                      +.|++|-.+++...   -+|||.+-.+  -.+.+|||.+++||+-.+...|-+.|-+|-..     -.+-..++.|.+..
T Consensus        67 gmRrsvegvlivheH~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~dg~~~dwtv~ecig~WWRPN  144 (221)
T KOG1689|consen   67 GMRRSVEGVLIVHEHNLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLGRSDGLVIDWTVGECIGNWWRPN  144 (221)
T ss_pred             hhhheeeeeEEEeecCCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhcccccccccccHhhhhhcccCCC
Confidence            36777777655443   3677665432  48999999999999999999999999999331     12223445555555


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHH
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVM  152 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~  152 (173)
                      |..-...++..+.....  .+...|+..+.... .+..      +......-+|+=++-+....+. +++..+.
T Consensus       145 Fe~~~YPyiP~hitkPK--eh~kL~lV~L~~k~-~F~V------PKN~KLlA~PLfeLydN~~~yG-PiiSslp  208 (221)
T KOG1689|consen  145 FETPMYPYIPPHITKPK--EHTKLFLVQLPEKQ-QFAV------PKNFKLLAVPLFELYDNAKTYG-PIISSLP  208 (221)
T ss_pred             CCCcccCCCCcccCCch--hccEEEEEEccccc-eEec------cCCceeeeeeHhhhhhcccccc-chhHHHH
Confidence            44433333332222221  23456666666432 2222      1223445567777766544332 4444443

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=97.54  E-value=0.00074  Score=50.84  Aligned_cols=97  Identities=19%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             eEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCCccccceEEEEEEEEccCccc
Q 030711           34 AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESE  113 (173)
Q Consensus        34 ~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (173)
                      ..+|..|.++..-|..+.|.||..||+|.+...-.....              .....|..-++..+++|++.+......
T Consensus       285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~v--------------a~y~sGVG~SG~~QTmfy~eVTdA~rs  350 (405)
T KOG4432|consen  285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLV--------------AKYISGVGQSGDTQTMFYVEVTDARRS  350 (405)
T ss_pred             eeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhh--------------heeecccCCcCCeeEEEEEEeehhhcc
Confidence            377888999988999999999999999998422111110              111223445566678887777653311


Q ss_pred             cccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711          114 INLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus       114 ~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                      ..-....+++|..+..-+++++++.+...+.
T Consensus       351 gpGgg~~ee~E~IEvv~lsle~a~~~~~q~~  381 (405)
T KOG4432|consen  351 GPGGGEKEEDEDIEVVRLSLEDAPSLYRQHN  381 (405)
T ss_pred             CCCCCcccccceeeEEEechhhhhHHHhccC
Confidence            1111113446888999999999999876543

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.50  E-value=0.00087  Score=47.49  Aligned_cols=123  Identities=19%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             CccceeEEEEEec-CC--cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch-----hhhhhccCCccccc
Q 030711            7 GYRPNVGVCLINS-DS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-----AEIIAEVPNWLTYD   78 (173)
Q Consensus         7 ~~~~~v~~~i~~~-~~--~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~-----~~~~~~~~~~~~~~   78 (173)
                      +.|++|.++++.. .+  +|||.+...  ..|.+|||.+.+||+..++..|.+.+-.|...     -.+-..++.|.+..
T Consensus        41 GmRrsVe~Vllvh~h~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~  118 (188)
T PF13869_consen   41 GMRRSVEGVLLVHEHGHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPN  118 (188)
T ss_dssp             SSEEEEEEEEEEEETTEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESS
T ss_pred             CCceEEEEEEEEecCCCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCC
Confidence            4678887765543 33  578877553  58999999999999999999999999999762     11223345556655


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA  140 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  140 (173)
                      |......++.-+.....  ....+|+..+... ..+..      +......-+|+-|+-+..
T Consensus       119 Fe~~~YPYlP~HitkPK--E~~klylV~Lpe~-~~F~V------Pkn~kL~AvPLFeLydN~  171 (188)
T PF13869_consen  119 FEPFMYPYLPPHITKPK--ECIKLYLVQLPEK-CLFAV------PKNMKLVAVPLFELYDNA  171 (188)
T ss_dssp             SSS--BSS--TT-SS-S--EEEEEEEEE--SS-EEEEE------ETTSEEEEEEHHHHTTTH
T ss_pred             CCCCCCCCCCcccCChh--heeEEEEEecCCC-ceEec------CCCCeEEeecHhhhhcCh
Confidence            55444443333322221  1234555555542 23333      233567778888887754

...

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=96.92  E-value=0.0046  Score=45.46  Aligned_cols=106  Identities=21%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             cEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhcc-CCcccccCCcccccccccccCCcc
Q 030711           22 QIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEV-PNWLTYDFPPAVKTKVNRLWGGEW   95 (173)
Q Consensus        22 ~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   95 (173)
                      ++.+-+|+.    +|+.|+-. +|++-.|-++.++|++|..||+.|+..-..... ....+|.+-.+..         .+
T Consensus       149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~---------~~  219 (306)
T KOG4313|consen  149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQ---------GL  219 (306)
T ss_pred             EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhh---------cc
Confidence            356666664    78888765 999999999999999999999999952111111 1112222211111         11


Q ss_pred             ccceEEEEEEEEccCc-cccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           96 HGQAQKWFLMKLTNDE-SEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        96 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                      ..  ..-|++-+.-.. .-++    ..+.|+..+.-+++.+..+.++.
T Consensus       220 ~p--e~qYVfDL~l~~d~iP~----~nDGEV~~F~Lltl~~~v~~l~~  261 (306)
T KOG4313|consen  220 FP--ETQYVFDLELPLDFIPQ----NNDGEVQAFELLTLKDCVERLFT  261 (306)
T ss_pred             Cc--cceEEEeccCchhhcCC----CCCCceeeEeeecHHHHHHHHHh
Confidence            11  233444444322 1222    23369999999999998876543

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=96.78  E-value=0.003  Score=47.69  Aligned_cols=56  Identities=23%  Similarity=0.362  Sum_probs=43.5

Q ss_pred             ceeEEEEEecC-CcEEEEEecC-----------CC----------------C-eEECCCcccCCCCCHHHHHHHHHHHHh
Q 030711           10 PNVGVCLINSD-SQIFVASRLN-----------VP----------------G-AWQMPQGGIEDGEDPKLAAMRELREET   60 (173)
Q Consensus        10 ~~v~~~i~~~~-~~vLl~~r~~-----------~~----------------~-~w~lPgG~ie~gE~~~~aa~RE~~EEt   60 (173)
                      .+|++++++.+ .++|++++.+           .+                | ..++.+|.|+.+-|+.+.|..|+.||+
T Consensus        27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eec  106 (405)
T KOG4432|consen   27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEEC  106 (405)
T ss_pred             cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence            45777778776 5677777654           01                1 367889999999999999999999999


Q ss_pred             CCchh
Q 030711           61 GIVSA   65 (173)
Q Consensus        61 Gl~~~   65 (173)
                      |..+.
T Consensus       107 gy~v~  111 (405)
T KOG4432|consen  107 GYRVD  111 (405)
T ss_pred             CCcCC
Confidence            99853

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=96.57  E-value=0.039  Score=40.79  Aligned_cols=42  Identities=17%  Similarity=0.275  Sum_probs=35.6

Q ss_pred             cEEEEEec-CCCCeEECCCccc-CCCCCHHHHHHHHHHHHhCCc
Q 030711           22 QIFVASRL-NVPGAWQMPQGGI-EDGEDPKLAAMRELREETGIV   63 (173)
Q Consensus        22 ~vLl~~r~-~~~~~w~lPgG~i-e~gE~~~~aa~RE~~EEtGl~   63 (173)
                      -+||++++ ...+.|.||.+.. +.++++..+|.|.++.-.|-.
T Consensus       140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~  183 (263)
T KOG4548|consen  140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN  183 (263)
T ss_pred             EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence            36788866 3446899999999 899999999999999999965

>PRK10880 adenine DNA glycosylase; Provisional

Probab=96.51  E-value=0.04  Score=43.31  Aligned_cols=45  Identities=20%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             eEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCc
Q 030711           12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIV   63 (173)
Q Consensus        12 v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~   63 (173)
                      ..++++..++++||.+|..   +.|.|+||..  +..     ...++..|+.|+.
T Consensus       233 ~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~~-----~~~~~~~~~~~~~  280 (350)
T PRK10880        233 GYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--ADE-----EELRQWLAQRGIA  280 (350)
T ss_pred             EEEEEEEECCEEEEEECCccChhhccccCCCC--cch-----hhHHHHHHhcCCc
Confidence            3344555678999999875   4589999963  211     1245566777875

>PRK13910 DNA glycosylase MutY; Provisional

Probab=91.76  E-value=1.9  Score=33.17  Aligned_cols=27  Identities=4%  Similarity=0.159  Sum_probs=19.0

Q ss_pred             eeeEeCHHHHHHhhhhcCchHHHHHHHHHh
Q 030711          127 EWKWASPEEVVEQAVDYKRPTYEEVMRTFR  156 (173)
Q Consensus       127 ~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~  156 (173)
                      ...|++++++.++..+   ..+..+++.++
T Consensus       256 ~~~w~~~~~~~~~~~p---~~~~k~~~~l~  282 (289)
T PRK13910        256 PIRFYSLKDLETLPIS---SMTLKILNFLK  282 (289)
T ss_pred             cceEecHHHhhhcCCc---HHHHHHHHHHh
Confidence            3489999999997664   55556655444

>PF14443 DBC1: DBC1

Probab=81.37  E-value=3.1  Score=27.70  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=23.3

Q ss_pred             CCeEECC--CcccCCC-CCHHHHHHHHHHHHhCCc
Q 030711           32 PGAWQMP--QGGIEDG-EDPKLAAMRELREETGIV   63 (173)
Q Consensus        32 ~~~w~lP--gG~ie~g-E~~~~aa~RE~~EEtGl~   63 (173)
                      +|.|+.-  ||-...+ ..+..||+|-+++-|||+
T Consensus        23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiD   57 (126)
T PF14443_consen   23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGID   57 (126)
T ss_pred             CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccc
Confidence            3566655  4444442 467899999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
1f3y_A	165	Solution Structure Of The Nudix Enzyme Diadenosine		2e-57
2kdv_A	164	Solution Structure Of Rna Pyrophosphohydrolase Rpph		2e-23
2kdw_A	164	Solution Structure Of Rpph Mutant E53a From Escheri		7e-23
1sjy_A	159	Crystal Structure Of Nudix Hydrolase Dr1025 From De		5e-06
3oga_A	165	1.75 Angstrom Resolution Crystal Structure Of A Put		1e-04
3dku_A	153	Crystal Structure Of Nudix Hydrolase Orf153, Ymfb,		2e-04
3hhj_A	158	Crystal Structure Of Mutator Mutt From Bartonella H		4e-04
3r03_A	144	The Crystal Structure Of Nudix Hydrolase From Rhodo		5e-04
3ees_A	153	Structure Of The Rna Pyrophosphohydrolase Bdrpph Le		6e-04
3i7u_A	134	Crystal Structure Of Ap4a Hydrolase (Aq_158) From A		7e-04
2fvv_A	194	Human Diphosphoinositol Polyphosphate Phosphohydrol		7e-04
1v8i_A	170	Crystal Structure Analysis Of The Adp-Ribose Pyroph		9e-04

>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine Tetraphosphate Hydrolase From Lupinus Angustifolius L. Length = 165

Iteration: 1
 Score =  217 bits (553), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 125/160 (78%), Gaps = 1/160 (0%)
Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MD  P GYR NVG+CL+N+D +IF ASRL++P AWQMPQGGI++GEDP+ AA+RELREET
Sbjct: 6   MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65
Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEIN-LANG 119
           G+ SAE+IAEVP WLTYDFPP V+ K+N  WG +W GQAQKWFL K T  + EIN L +G
Sbjct: 66  GVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDG 125
Query: 120 EADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
              PEF EW W +PE++++  V++K+P Y+EV+  F P+L
Sbjct: 126 SEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL 165

>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From Escherichia Coli Length = 164

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 82/154 (53%), Gaps = 13/154 (8%)
Query: 7   GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
           GYRPNVG+ + N   Q+  A R     +WQ PQGGI  GE  + A  REL EE G+   +
Sbjct: 6   GYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKD 64
Query: 67  --IIAEVPNWLTYDFPPAV---KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEA 121
             I+A   NWL Y  P  +    TK   +      GQ QKWFL++L + ++EIN+    +
Sbjct: 65  VRILASTRNWLRYKLPKRLVRWDTKPVCI------GQKQKWFLLQLVSGDAEINMQTS-S 117
Query: 122 DPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
            PEF  W+W S    V Q V +KR  Y  VM+ F
Sbjct: 118 TPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEF 151

>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia Coli Length = 164

Iteration: 1
 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 81/154 (52%), Gaps = 13/154 (8%)
Query: 7   GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
           GYRPNVG+ + N   Q+  A R     +WQ PQGGI  GE  + A  R L EE G+   +
Sbjct: 6   GYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRALFEEVGLSRKD 64
Query: 67  --IIAEVPNWLTYDFPPAV---KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEA 121
             I+A   NWL Y  P  +    TK   +      GQ QKWFL++L + ++EIN+    +
Sbjct: 65  VRILASTRNWLRYKLPKRLVRWDTKPVCI------GQKQKWFLLQLVSGDAEINMQTS-S 117
Query: 122 DPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
            PEF  W+W S    V Q V +KR  Y  VM+ F
Sbjct: 118 TPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEF 151

>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From Deinococcus Radiodurans Length = 159

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 13 GVCLINSDSQIFVASRLNVPGA------WQMPQGGIEDGEDPKLAAMRELREETGI 62
          GV L+N    I +     +PG       W +P G +EDGE+P+ AA+RE  EETG+
Sbjct: 17 GVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72

>pdb|3OGA|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of A Putative Ntp Pyrophosphohydrolase (Yfao) From Salmonella Typhimurium Lt2 Length = 165

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 9   RPNVGVC-LINSDSQIFVA----SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
           R    VC LI +D    +     +R   PG W +  GG+E GE  + A  RE+REE G  
Sbjct: 26  RQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELG-- 83
Query: 64  SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP 123
              I++++  W T+     +KT  +        G+ ++ +++ L  D    N  +   + 
Sbjct: 84  EQLILSDITPW-TFRDDIRIKTYAD--------GRQEEIYMIYLIFDCVSAN-RDICIND 133
Query: 124 EFAEWKWASPEEV 136
           EF ++ W  PEE+
Sbjct: 134 EFQDYAWVKPEEL 146

>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From Escherichia Coli K-1 Length = 153

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 8   YRPNVGV-CLINSDSQIFVASR-LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
           ++P+V V C+++++ +  V    +N    W  P G +E  E    AA REL EETGI + 
Sbjct: 2   FKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQ 61
Query: 66  -EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
            +    +  W+  D  P                     FL  L   E E        D +
Sbjct: 62  PQHFIRMHQWIAPDKTP---------------------FLRFLFAIELEQICPTQPHDSD 100
Query: 125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTFR 156
               +W S EE++ QA + + P   E +R ++
Sbjct: 101 IDCCRWVSAEEIL-QASNLRSPLVAESIRCYQ 131

>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae Length = 158

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 12 VGVCLINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          V   L++ D+++ +  R    ++ G W+ P G +E GE P+ + +REL EE G+
Sbjct: 32 VACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGV 85

>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From Rhodospirillum Rubrum Length = 144

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 12 VGVCLINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
              LI+ D ++ +A R    ++ G W+ P G +E GE P+ A +REL EE G+
Sbjct: 11 TAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGV 64

>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph Length = 153

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 16 LINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           +  D +I V  R    ++ G W+ P G IE+GE P+ A  REL EE GI
Sbjct: 28 FLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGI 77

>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex Aeolicus Vf5 Length = 134

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 11  NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--- 67
           + G  L      + + +  NV   W  P+G IE GE P+  A+RE+ EETG V  EI   
Sbjct: 6   SAGGVLFKDGEVLLIKTPSNV---WSFPKGNIEPGEKPEETAVREVWEETG-VKGEILDY 61
Query: 68  IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDE 111
           I E+  W T                GE   +  K++LMK    E
Sbjct: 62  IGEIHYWYTLK--------------GERIFKTVKYYLMKYKEGE 91

>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 Length = 194

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 7  GYRPNVGVCLINSDSQ--IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          GY+         S+S+  + + S    P  W +P GG+E  E+P +AA+RE+ EE G+
Sbjct: 38 GYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95

>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose Pyrophosphatase Length = 170

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 53/137 (38%), Gaps = 30/137 (21%)
Query: 8   YRPNVGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
           ++P V V  +     +FV       G    ++P G IE GEDP  AA REL EETG+   
Sbjct: 33  HKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGLS-- 90
Query: 66  EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP-- 123
               ++    +Y   P    +   ++  E                    NL   EA P  
Sbjct: 91  ---GDLTYLFSYFVSPGFTDEKTHVFLAE--------------------NLKEVEAHPDE 127
Query: 124 -EFAEWKWASPEEVVEQ 139
            E  E  W  PEE +E+
Sbjct: 128 DEAIEVVWMRPEEALER 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	4e-81
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	5e-73
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	1e-35
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	6e-30
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	5e-28
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	6e-23
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	1e-17
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	1e-13
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	1e-13
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-13
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	3e-13
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	5e-13
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	2e-12
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	4e-12
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	6e-12
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	8e-12
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	9e-12
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	9e-12
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	2e-11
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	2e-11
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	5e-11
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	6e-11
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	8e-11
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	1e-10
3grn_A	153	MUTT related protein; structural genomics, hydrola	3e-10
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	3e-10
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	4e-10
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	5e-10
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	7e-10
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	1e-09
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	2e-09
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	2e-09
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	2e-09
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	5e-09
3f13_A	163	Putative nudix hydrolase family member; structural	5e-09
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	6e-09
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	8e-09
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	1e-08
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	1e-08
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	3e-08
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	3e-08
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	3e-08
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	5e-08
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	8e-08
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	9e-08
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	1e-07
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	2e-07
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	3e-07
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	8e-07
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	8e-07
3exq_A	161	Nudix family hydrolase; protein structure initiati	9e-07
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	1e-06
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	1e-06
2b06_A	155	MUTT/nudix family protein; structural genomics, P	2e-06
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	1e-05
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	2e-05
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	3e-05
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	2e-04
2fb1_A	226	Conserved hypothetical protein; structural genomic	2e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	5e-04
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	6e-04
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	9e-04

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score =  236 bits (605), Expect = 4e-81
 Identities = 97/160 (60%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MD  P GYR NVG+CL+N+D +IF ASRL++P AWQMPQGGI++GEDP+ AA+RELREET
Sbjct: 6   MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINL-ANG 119
           G+ SAE+IAEVP WLTYDFPP V+ K+N  WG +W GQAQKWFL K T  + EINL  +G
Sbjct: 66  GVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDG 125

Query: 120 EADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
              PEF EW W +PE++++  V++K+P Y+EV+  F P+L
Sbjct: 126 SEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL 165

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score =  215 bits (551), Expect = 5e-73
 Identities = 61/155 (39%), Positives = 79/155 (50%), Gaps = 7/155 (4%)

Query: 7   GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV--S 64
           GYRPNVG+ + N   Q+  A R     +WQ PQGGI  GE  + A  REL EE G+    
Sbjct: 6   GYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKD 64

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
             I+A   NWL Y  P  +   V         GQ QKWFL++L + ++EIN+      PE
Sbjct: 65  VRILASTRNWLRYKLPKRL---VRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSS-TPE 120

Query: 125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
           F  W+W S    V Q V +KR  Y  VM+ F   +
Sbjct: 121 FDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVV 155

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score =  120 bits (303), Expect = 1e-35
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 17/141 (12%)

Query: 7   GYRPNVGVCLI---NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
            Y+  V + ++       ++ +  R + P  WQ   G +E+GE    AAMRE++EE  I 
Sbjct: 5   VYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTID 64

Query: 64  SAEI---IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
                  + +    + ++    ++   +R   G      + WF + L ++  +I      
Sbjct: 65  VVAEQLTLIDCQRTVEFEIFSHLR---HRYAPG-VTRNTESWFCLALPHE-RQIVF---- 115

Query: 121 ADPEFAEWKWASPEEVVEQAV 141
              E   +KW           
Sbjct: 116 --TEHLAYKWLDAPAAAALTK 134

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score =  106 bits (265), Expect = 6e-30
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 24/158 (15%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA-- 65
           +R  +   + N+  +  +    +    W  P+G +E GED    A+R  +EE GI +   
Sbjct: 16  FRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75

Query: 66  EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEF 125
            II      L Y      KT                ++L ++ + + EI L       E 
Sbjct: 76  TIIEGFKRELNYVARNKPKT--------------VIYWLAEVKDYDVEIRL-----SHEH 116

Query: 126 AEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENG 163
             ++W   EE  + A   +    +  ++    +L    
Sbjct: 117 QAYRWLGLEEACQLA---QFKEMKAALQEGHQFLCSIE 151

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score =  100 bits (252), Expect = 5e-28
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 21/143 (14%)

Query: 17  INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLT 76
           +    +  +      P  W  P+G ++ GED   AA+RE +EE  I   ++        T
Sbjct: 14  LAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHET 73

Query: 77  YDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEV 136
             +    K K              K++L KL N + ++ L       E   WKW   E+ 
Sbjct: 74  LFYEAKGKPKS------------VKYWLAKLNNPD-DVQL-----SHEHQNWKWCELEDA 115

Query: 137 VEQAVDYKRPTYEEVMRTFRPYL 159
           ++ A          ++R F  +L
Sbjct: 116 IKIA---DYAEMGSLLRKFSAFL 135

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 88.1 bits (218), Expect = 6e-23
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 17/151 (11%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
           +      ++ Q  V  R +    WQ   GG ED E     A RE  EE  +     +  +
Sbjct: 11  IPFIKTEANYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSL 69

Query: 72  PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWA 131
            +      P             + +   +  F + LT+   ++ L       E +E +W 
Sbjct: 70  DSH--ASIPNF------HFSFNKPYVVPEYCFAIDLTSCSYQVTL-----SLEHSELRWV 116

Query: 132 SPEEVVEQAVDYKRPTYEEVMRTFRPYLNEN 162
           S E  ++     +  + +  +      L  N
Sbjct: 117 SYESAIQLL---EWDSNKTALYELNERLKNN 144

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 75.3 bits (185), Expect = 1e-17
 Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 4   LPSGYRPNVGVC---LINSDSQIFVA-SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREE 59
                   VGV       S  +I V   R  +   W+ P G  E  ED    A+RE+ EE
Sbjct: 19  YFQSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEE 78

Query: 60  TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANG 119
           TGI  +E  + +          +++ +          G++  + + +L      IN    
Sbjct: 79  TGI-KSEFRSVL----------SIRQQHTNPGA---FGKSDMYIICRLKPYSFTINF--- 121

Query: 120 EADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE 161
               E    +W    ++ +   +   P    V R       E
Sbjct: 122 -CQEECLRCEWMDLNDLAKT--ENTTPITSRVARLLLYGYRE 160

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 28/152 (18%)

Query: 8   YRPNVGVC---LINSDS-QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
           Y+  + V    +++    Q  +         W  P+G I+  E     A+RE+ EETG  
Sbjct: 97  YKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD 156

Query: 64  SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP 123
            +  I                   N        GQ  + +++   + ++           
Sbjct: 157 CSSRINP-----------------NEFIDMTIRGQNVRLYIIPGISLDTRF---ESRTRK 196

Query: 124 EFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF 155
           E ++ +W +  ++      +K+   + +   F
Sbjct: 197 EISKIEWHNLMDLPT----FKKNKPQTMKNKF 224

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 64.2 bits (156), Expect = 1e-13
 Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 23/156 (14%)

Query: 9   RPNVGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
             ++   + NS  +  +  R N P    W +P G ++  E  + A  R    E G+    
Sbjct: 18  LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPI 77

Query: 67  IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFA 126
              +      + +        +   G ++          +    E E+ L + + D    
Sbjct: 78  TAGQFYGVWQHFYD-------DNFSGTDFTTHY-VVLGFRFRVSEEELLLPDEQHD---- 125

Query: 127 EWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNEN 162
           +++W + + +            + V    R Y    
Sbjct: 126 DYRWLTSDAL---------LASDNVHANSRAYFLAE 152

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 64.3 bits (156), Expect = 2e-13
 Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 25/154 (16%)

Query: 5   PSGYRPNVG-VCL-INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
             GY+     +C    S+ ++ + S    P  W +P GG+E  E+P +AA+RE+ EE G+
Sbjct: 36  GDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95

Query: 63  VSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEAD 122
                +  +                      +         + ++  D         ++ 
Sbjct: 96  KG--TLGRLVGIFEN-------------QERKHRTYVYVLIVTEVLEDWE-------DSV 133

Query: 123 PEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFR 156
               + +W   E+ ++  + Y +P       T R
Sbjct: 134 NIGRKREWFKIEDAIKV-LQYHKPVQASYFETLR 166

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 62.1 bits (151), Expect = 5e-13
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 28/155 (18%)

Query: 8   YRPNVGV-CLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
           ++P+V V C+++++ +  V          W  P G +E  E    AA REL EETGI   
Sbjct: 2   FKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGIS-- 59

Query: 66  EIIAEVPNWLT-YDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
              A+  +++  + +    KT   R             F ++L              D +
Sbjct: 60  ---AQPQHFIRMHQWIAPDKTPFLRF-----------LFAIELEQICPTQ-----PHDSD 100

Query: 125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
               +W S EE+++ +          V  + R Y 
Sbjct: 101 IDCCRWVSAEEILQAS----NLRSPLVAESIRCYQ 131

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 34/152 (22%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
            G  + N+  ++ +       G W  P+G  E GE  + AA+RE+ EETG+  AE++  +
Sbjct: 5   AGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGV-RAEVLLPL 61

Query: 72  PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWA 131
                Y  P  V+ +V              WFLM+               +       W 
Sbjct: 62  Y-PTRYVNPKGVEREV-------------HWFLMRGEGAP--------RLEEGMTGAGWF 99

Query: 132 SPEEVVEQAVDYKRPTYE---EVMRTFRPYLN 160
           SPEE            +     ++      L 
Sbjct: 100 SPEEARA------LLAFPEDLGLLEVALERLP 125

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 59.9 bits (145), Expect = 4e-12
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 22/135 (16%)

Query: 9   RPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
           +  +   LI +D    +    +     PG W +  GG+E GE  + A  RE+REE G   
Sbjct: 27  QRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGE-Q 85

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKL---TNDESEINLANGEA 121
             +    P   T+     +KT  +         Q + + +  +    +   +I + +   
Sbjct: 86  LILSDITP--WTFRDDIRIKTYAD-------GRQEEIYMIYLIFDCVSANRDICIND--- 133

Query: 122 DPEFAEWKWASPEEV 136
             EF ++ W  PEE+
Sbjct: 134 --EFQDYAWVKPEEL 146

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 59.5 bits (144), Expect = 6e-12
 Identities = 29/158 (18%), Positives = 49/158 (31%), Gaps = 31/158 (19%)

Query: 8   YRPNVGV-CLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIVS 64
           ++PNV V  +I  D +  +   +    A     P G +E GE    A  RE+ EETG   
Sbjct: 5   WKPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS- 63

Query: 65  AEIIAEVPNWL---TYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEA 121
                          +       T +   + G+                       + + 
Sbjct: 64  ----FLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSF-----------------DPDRKL 102

Query: 122 DPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
           D       W S +E+  +   ++ P    VM+    Y 
Sbjct: 103 DTGIVRAAWFSIDEIRAKQAMHRTP---LVMQCIEDYH 137

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 59.1 bits (143), Expect = 8e-12
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 25/154 (16%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
           V   ++  + ++ +     + G +  P G +E  E P  A  RE  EETGI   E I   
Sbjct: 3   VTSGVLVENGKVLLVKHKRL-GVYIYPGGHVEHNETPIEAVKREFEEETGI-VVEPIGFT 60

Query: 72  PNWLTYDFPPAVKTKVNRL----WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAE 127
              +  +        V       +  E H      +L+K    + +              
Sbjct: 61  YGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLK-------------N 107

Query: 128 WKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE 161
            +W    E+          T+  V +     L+ 
Sbjct: 108 GEWIDVREIDR------IETFPNVRKVVSLALST 135

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 59.2 bits (143), Expect = 9e-12
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 11/111 (9%)

Query: 33  GAWQMPQGGIEDGEDPKLAAMRELREETGI-VSAEIIAEVPNWLTYDFP----PAVKTKV 87
                  G IE  E P+ A +RE +EE G+ V+     ++    + D             
Sbjct: 28  KKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLINPIHT 87

Query: 88  NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVE 138
                   H      +    T+ E+           E    KW S E++  
Sbjct: 88  ILGDVSPNHSHIDFVYYATTTSFETSPE------IGESKILKWYSKEDLKN 132

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 61.0 bits (147), Expect = 9e-12
 Identities = 24/148 (16%), Positives = 49/148 (33%), Gaps = 10/148 (6%)

Query: 33  GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 92
             W  P+G +E  E  + AA+RE+ EETG    ++   +   + Y      K K      
Sbjct: 49  DDWSWPKGKLEQNETHRHAAVREIGEETGS-PVKLGPYLC-EVEYPLSEEGK-KTRHSHD 105

Query: 93  GEWHGQAQKWFLMKLTNDESEINLANG------EADPEFAEWKWASPEEVVEQ-AVDYKR 145
                +   +++ +  + +   +L +           E  +  W S  E  +  +    +
Sbjct: 106 CTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDK 165

Query: 146 PTYEEVMRTFRPYLNENGIAAKCKSAKW 173
            T    +   +            + AK 
Sbjct: 166 DTLAVFVDRVQEGAATAQNLLIVRHAKA 193

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 28/151 (18%)

Query: 9   RPNVGV-CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI-VS 64
           +P VG    I  D +I +  R   P  G W +P G ++  E  + A  RE+ EE GI + 
Sbjct: 27  QPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALE 86

Query: 65  AEIIAEVPNWLTYDFPPAVKTKV--NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEAD 122
              +  V + +           V     + GE                            
Sbjct: 87  RATLLCVVDHIDAANGEHWVAPVYLAHAFSGEPRVV----------------------EP 124

Query: 123 PEFAEWKWASPEEVVEQAVDYKRPTYEEVMR 153
                  W + +++ +      R   E+V R
Sbjct: 125 DRHEALGWFALDDLPQPLTHATRIALEQVTR 155

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 29/133 (21%), Positives = 44/133 (33%), Gaps = 24/133 (18%)

Query: 9   RPNV-GVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
           R     +     ++ + +    N  GA+ +P G IE  E  + A  RE+ EE GI S EI
Sbjct: 18  RYAAYIIVSKPENNTMVLVQAPN--GAYFLPGGEIEGTETKEEAIHREVLEELGI-SVEI 74

Query: 68  IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP--EF 125
              +     Y +                H Q   +            N     ++P    
Sbjct: 75  GCYLGEADEYFYSN--------------HRQTAYYNPGYF----YVANTWRQLSEPLERT 116

Query: 126 AEWKWASPEEVVE 138
               W +PEE V 
Sbjct: 117 NTLHWVAPEEAVR 129

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 57.0 bits (138), Expect = 5e-11
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 24/133 (18%)

Query: 7   GYRPNVGVC-LINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV-- 63
                V    LI  + ++ V       G +    G I+  E  + A +RE++EE G+   
Sbjct: 15  NTVFGVRATALIVQNHKLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQ 71

Query: 64  SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP 123
           + ++   V N    D             G  +H   +  +L+ L  D         + D 
Sbjct: 72  AGQLAFVVENRFEVD-------------GVSYH-NIEFHYLVDLLEDA----PLTMQEDE 113

Query: 124 EFAEWKWASPEEV 136
           +    +W   +++
Sbjct: 114 KRQPCEWIDLDKL 126

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 57.7 bits (139), Expect = 6e-11
 Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
                +N +   F+    N+  +W    G  ++ +D    A++EL+EETG+ +   + + 
Sbjct: 48  SSAFAVNKERNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDK 107

Query: 72  PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWA 131
              L           + R      H      +L++ + DE+ +       + E +   W 
Sbjct: 108 AFALDVLTVNGH---IKRGKYVSSHLHLNLTYLIECSEDETLM-----LKEDENSGVMWI 159

Query: 132 SPEEVVEQAVDYK-RPTYEEVMRTFR 156
              E+ +   +    P YE+++   +
Sbjct: 160 PFNEISKYCSEPHMIPIYEKLINKLK 185

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 56.7 bits (137), Expect = 8e-11
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 27/156 (17%)

Query: 10  PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
                 ++  D ++ +  +      W +P G +E+GE  + A +RE+REETG+       
Sbjct: 23  QVRVTGILIEDEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLE-----V 77

Query: 70  EVPNWL-TYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP-EFAE 127
           ++   L   D P                  +       L   E EI L + E D     +
Sbjct: 78  KIKKLLYVCDKP--------------DASPSLLHITFLLERIEGEITLPSNEFDHNPIHD 123

Query: 128 WKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENG 163
            +     E+            E  +      L   G
Sbjct: 124 VQMVPINELSY------YGFSETFINLISGGLANAG 153

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 40/164 (24%)

Query: 5   PSGYRPNVGV----CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELRE 58
           P   R NV        ++   ++ +         G+W +P G +E GE    A  RE++E
Sbjct: 12  PVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKE 71

Query: 59  ETGIVSAEIIAEV------PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDES 112
           E G+   E    +      P+W+ + F       + R  GG                   
Sbjct: 72  EAGLH-CEPETLLSVEERGPSWVRFVF-------LARPTGGI------------------ 105

Query: 113 EINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFR 156
                + EAD E  +  W     +      +      E+   +R
Sbjct: 106 --LKTSKEADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQYR 147

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 29/136 (21%)

Query: 8   YRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
           Y  +V   + N   +  +  R        G W +P G +   E  K    RE+ EETGI 
Sbjct: 7   YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI- 65

Query: 64  SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGE-WHGQAQKWFLMKLTNDESEINLANGEAD 122
           +            ++     K  +  ++ G       +        + E           
Sbjct: 66  TMVPGDIAGQV-NFELTE--KKVIAIVFDGGYVVADVK-------LSYEHI--------- 106

Query: 123 PEFAEWKWASPEEVVE 138
               E+ W S E+++ 
Sbjct: 107 ----EYSWVSLEKILG 118

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 25/133 (18%)

Query: 12  VGVCLINSDSQIFVASRLNVP------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
            GV L+N    I +     +P      G W +P G +EDGE+P+ AA+RE  EETG+   
Sbjct: 16  AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLR-V 74

Query: 66  EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEF 125
             +  +  +    FP            G    +    +L +    ++           E 
Sbjct: 75  RPVKFLGAY-LGRFPD-----------GVLILRH--VWLAEPEPGQTLAP----AFTDEI 116

Query: 126 AEWKWASPEEVVE 138
           AE  + S E+  +
Sbjct: 117 AEASFVSREDFAQ 129

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 15/104 (14%)

Query: 11  NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
            V   L++ D+++ +  R     + G W+ P G +E GE P+ + +REL EE G+     
Sbjct: 31  VVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQAD 90

Query: 68  IAEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKW 102
                 + ++ +       +         + G      GQ  KW
Sbjct: 91  NLFPLTFASHGYE---TFHLLMPLYFCSHYKGVAQGREGQNLKW 131

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 20/126 (15%)

Query: 10  PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
           P  G  + N +    +  +     +W  P+G I   E+     +RE++EE G    + I 
Sbjct: 5   PVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYID 64

Query: 70  EVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWK 129
           +   ++  +                  G+  K FL+   ++         +   E  + +
Sbjct: 65  DN-QFIERNI----------------QGKNYKIFLISGVSEVFNFKP---QVRNEIDKIE 104

Query: 130 WASPEE 135
           W   ++
Sbjct: 105 WFDFKK 110

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 53.5 bits (129), Expect = 7e-10
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 15/103 (14%)

Query: 12  VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
               LI+ D ++ +A R     + G W+ P G +E GE P+ A +REL EE G+ +    
Sbjct: 11  TAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASC 70

Query: 69  AEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKW 102
                + ++ +       +       R W G      GQ   W
Sbjct: 71  LAPLAFASHSYDTF---HLLMPLYACRSWRGRATAREGQTLAW 110

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 19/106 (17%)

Query: 11  NVGVCLINSDSQIFVASRLN-----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
            V   +I    +     R           ++ P G +E+GE  + A  RE+ EE   V  
Sbjct: 7   EVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYV-I 65

Query: 66  EIIAEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKW 102
           E+  ++     + +P     ++          G  +      A +W
Sbjct: 66  EVGEKLLTV-HHTYP---DFEITMHAFLCHPVGQRYVLKEHIAAQW 107

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 31/162 (19%)

Query: 12  VGVCLINSDSQIFV----ASRLNVPGAWQMPQGG-IEDGEDPKLAAMRELREETGIVSAE 66
             + + +   +I V     ++  +PG      GG ++  E    +A RE  EE GI    
Sbjct: 40  TYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVP 99

Query: 67  IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP-EF 125
                            + K  R+WG  +                    L        E 
Sbjct: 100 --------FAEHGQFYFEDKNCRVWGALFSCV-----------SHGPFAL-----QEDEV 135

Query: 126 AEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAK 167
           +E  W +PEE+  +  ++  P   + +  +     +N     
Sbjct: 136 SEVCWLTPEEITARCDEF-TPDSLKALALWMKRNAKNEAVET 176

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           V   +I  D +I +A R       G W+   G +E  E  + A +RELREE GI
Sbjct: 10 EVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGI 64

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 51.5 bits (124), Expect = 5e-09
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           V    +  D +I V  R     + G W+ P G IE+GE P+ A  REL EE GI
Sbjct: 23 PVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGI 77

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
              +I     + V +     G + +P G    GE    A +RE+REETG+
Sbjct: 18 RATAIIEMPDGVLVTASRG--GRYNLPGGKANRGELRSQALIREIREETGL 66

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 51.7 bits (124), Expect = 6e-09
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 28/131 (21%)

Query: 9   RPNVGV-CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
            P V V C+   ++++ +  R   P  G W +P G +E+ E     A RE  EE      
Sbjct: 38  NPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANAR-- 95

Query: 66  EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEF 125
             +     +  Y  P                 Q    F  KL + +            E 
Sbjct: 96  --VEIRELYAVYSLPHI--------------SQVYMLFRAKLLDLDF-------FPGIES 132

Query: 126 AEWKWASPEEV 136
            E +    +E+
Sbjct: 133 LEVRLFGEQEI 143

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 50.2 bits (121), Expect = 8e-09
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
              + N +++IF+  R     +    + P G IE GE P+ A +REL+EE GI
Sbjct: 7  AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 7   GYR-PNVGV-CLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           GY+ P V +  ++  + ++         G W +P G  + G  P   A +E+ EETG 
Sbjct: 63  GYQTPKVDIRAVVFQNEKLLFVKE-KSDGKWALPGGWADVGYTPTEVAAKEVFEETGY 119

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 14 VCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
          + L+    ++ +  +    GA  W    G +++GE  +  A REL+EE+G+
Sbjct: 29 LVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL 79

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 23/155 (14%)

Query: 9   RPNVGV-CLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
            P +     I  + +I +    +  G W +P G  +  +  K   ++E++EE G+   E 
Sbjct: 68  TPKLDTRAAIFQEDKILLVQEND--GLWSLPGGWCDVDQSVKDNVVKEVKEEAGLD-VEA 124

Query: 68  IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAE 127
              V          A+  K         H   + + L +L   E        + + E   
Sbjct: 125 QRVV----------AILDKHKNNPAKSAHRVTKVFILCRLLGGE-------FQPNSETVA 167

Query: 128 WKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNEN 162
             + S +++    +   + T E++        +E+
Sbjct: 168 SGFFSLDDLPPLYLG--KNTAEQLALCLEASRSEH 200

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
           ++  GG+E GED   AA REL EE G  ++E +
Sbjct: 34 TEIVAGGVEKGEDLGAAAARELLEEVGGAASEWV 67

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 16/27 (59%), Positives = 19/27 (70%)

Query: 35 WQMPQGGIEDGEDPKLAAMRELREETG 61
           ++P G IE GEDP  AA REL E+TG
Sbjct: 62 LEIPAGLIEPGEDPLEAARRELAEQTG 88

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 9  RPNVGV-CLI-----NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           P +    +I      +   I +  R   P    +P G +E GE  + AA RE+REETG+
Sbjct: 7  TPLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGL 66

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 49.6 bits (118), Expect = 8e-08
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 5   PSGYRPNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           P          L+  +  I +  R   P    W +P G +E  E    A +REL EET I
Sbjct: 203 PFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNI 262

Query: 63  V--SAEIIAEVPNWLTYDFP 80
                ++         +D+P
Sbjct: 263 NLTHEQLAIAKRCEKVFDYP 282

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 48.6 bits (116), Expect = 9e-08
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI-VSAEIIAE 70
          V  C++    Q+ +  +    G W  P G +E GE       RE  EETGI V    +  
Sbjct: 6  VTNCIVVDHDQVLLLQK-PRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKG 64

Query: 71 VPNWLTYDFPPAVKTKVN-----RLWGGE 94
          + + + +D    V   +          GE
Sbjct: 65 IFSMVIFDEGKIVSEWMLFTFKATEHEGE 93

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 35  WQMPQGGIEDGEDPKLAAMRELREETG 61
               +G I+ GE    AA REL+EE G
Sbjct: 77  LGFSKGLIDPGESVYEAANRELKEEVG 103

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 35  WQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
            ++P G +++GE P+ AA RELREE G  +  +I
Sbjct: 70  LEVPAGKVDEGETPEAAARRELREEVGAEAETLI 103

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 26/132 (19%)

Query: 12  VGVCLINSDSQIFV----ASRLNVPGAWQMPQGG-IEDGEDPKLAAMRELREETGIVSAE 66
           V   L NS  Q+++     S+   P A  +  GG ++ GE  + A  RE REE  +    
Sbjct: 37  VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDA 96

Query: 67  IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFA 126
           +        ++       +    ++                  + ++I           +
Sbjct: 97  L--SWRPLASFSPFQTTLSSFMCVYELRSDA--------TPIFNPNDI-----------S 135

Query: 127 EWKWASPEEVVE 138
             +W +PE ++ 
Sbjct: 136 GGEWLTPEHLLA 147

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 24/133 (18%)

Query: 12  VGVCLINSDSQIFVASR----LNVPGAWQMPQGG-IEDGEDPKLAAMRELREETGIVSAE 66
               L N+  Q+ V  R       PG W     G  + GE  + A +R  R E G+    
Sbjct: 35  FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 94

Query: 67  IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADP-EF 125
             +  P+   Y          + +   E         +         + +     +  E 
Sbjct: 95  PESIYPD-FRYRATDP-----SGIVENEVC------PVFAARTTS-ALQI-----NDDEV 136

Query: 126 AEWKWASPEEVVE 138
            +++W    +V+ 
Sbjct: 137 MDYQWCDLADVLH 149

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 14 VCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          + LI               G W +P G +++ E  + AA REL EET +
Sbjct: 48 ILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSL 96

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 12 VGVCLI--NSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
          V + ++      ++ V  ++NVP       P G +E GE    AA+RE+ EETG+
Sbjct: 12 VTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 16/27 (59%), Positives = 20/27 (74%)

Query: 35  WQMPQGGIEDGEDPKLAAMRELREETG 61
            + P G I+DGE P+ AA+REL EETG
Sbjct: 94  IEFPAGLIDDGETPEAAALRELEEETG 120

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 35  WQMPQGGIE-DGEDPKLAAMRELREETGIVSAEI 67
           W++P G ++  GE P L A RELREE G+ ++  
Sbjct: 72  WELPAGLLDVAGEPPHLTAARELREEVGLQASTW 105

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 12 VGVCLI--NSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
            +CLI      ++ +  R    N    +  P G +E+ E    + +RE+ EETG+
Sbjct: 10 TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGL 65

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 15  CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIV--SAEIIAE 70
            ++     + +  R   P  G   +P G I+  E      +REL+EET +      +   
Sbjct: 208 AVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGS 267

Query: 71  VPNWLTYDFP 80
           + +   +D P
Sbjct: 268 IVDSHVFDAP 277

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           +W +P G +   E  + + +RE +EETG+
Sbjct: 70 NSWALPGGFVNRNESTEDSVLRETKEETGV 99

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
           P   +M  G IE+GE  +  A RE  EE G++     
Sbjct: 89  PWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTK 125

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 21/134 (15%)

Query: 12  VGVCLINSDSQIFVASR----LNVPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
            G     +D  +++  R       PG    M  GG       +   ++E  EE  +  A 
Sbjct: 124 NGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEAL 183

Query: 67  IIAEVP-NWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEF 125
               +P   +TY        K + L+           + + L  D    N      D E 
Sbjct: 184 ARQAIPVGAITYCMESPAGIKPDTLF----------LYDLALPEDFRPHN-----TDGEM 228

Query: 126 AEWKWASPEEVVEQ 139
           A++      +VVE 
Sbjct: 229 ADFMLWPAAKVVEA 242

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 1  MDGLPSGY-RPNVGV-----CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAA 52
          M    S      +G+          +  + +  R   P  G W +  G ++  E    AA
Sbjct: 2  MKNYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAA 61

Query: 53 MRELREETGI 62
           R L E TG+
Sbjct: 62 KRVLAELTGL 71

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLT 76
            G    P G ++ GE P  AA+RE +EE  +  A   ++ E+ +  T
Sbjct: 63  KGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFT 109

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 41  GIEDGEDPKLAAMRELREETGIVSAEII 68
           G+ D ++P++   +E  EETG    E+ 
Sbjct: 86  GLLDNDEPEVCIRKEAIEETGYEVGEVR 113

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 37.5 bits (86), Expect = 9e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 24  FVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAE 70
           FVA +    G W +P G ++ GE       RE  EE      +  AE
Sbjct: 141 FVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAE 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.96
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.92
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.91
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.9
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.88
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.88
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.87
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.87
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.87
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.87
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.86
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.86
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.86
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.85
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.85
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.85
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.85
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.85
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.85
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.84
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.84
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.84
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.84
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.84
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.83
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.83
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.83
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.83
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.83
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.83
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.83
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.82
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.82
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.82
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.82
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.82
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.82
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.82
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.82
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.81
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.81
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.81
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.81
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.81
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.81
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.8
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.8
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.8
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.8
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.8
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.79
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.79
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.79
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.78
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.78
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.78
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.78
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.78
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.78
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.77
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.77
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.76
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.76
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.74
3f13_A	163	Putative nudix hydrolase family member; structural	99.74
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.73
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.73
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.7
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.65
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.65
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.64
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.63
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.58
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.46
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.28
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.22
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.01

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.96  E-value=8.7e-28  Score=167.10  Aligned_cols=158  Identities=61%  Similarity=1.225  Sum_probs=114.6

Q ss_pred             CCCCCCCccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (173)
Q Consensus         1 m~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (173)
                      |...+..+|.++++++++.++++||++|...+|.|.+|||++++|||+.+||+||++||||+.+..+......+..+.++
T Consensus         6 ~~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   85 (165)
T 1f3y_A            6 MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFP   85 (165)
T ss_dssp             CSSCCSSCCCEEEEEEECTTSCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCC
T ss_pred             ccCCccceeeeEEEEEECCCCcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecC
Confidence            44445679999999999999999999998767899999999999999999999999999999864443333333455555


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccC-CCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhh
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLA-NGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY  158 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~  158 (173)
                      ......+...++..+.+...++|++.+........+. +..+++|+.+++|++++++.+++.+...+.++.+++.|.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~l~~~  164 (165)
T 1f3y_A           86 PKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPH  164 (165)
T ss_dssp             HHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHHHHGGG
T ss_pred             ccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHHHhhhc
Confidence            4433223333334444445678888887654333331 11234689999999999999988765567888887777654

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.92  E-value=4e-24  Score=147.62  Aligned_cols=132  Identities=20%  Similarity=0.334  Sum_probs=87.0

Q ss_pred             ceeEEEEE---------ecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711           10 PNVGVCLI---------NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (173)
Q Consensus        10 ~~v~~~i~---------~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (173)
                      ++++++|+         |.+.++||++|++.++.|.+|||++++|||+.+||+||++||||+.+..............+.
T Consensus         4 ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   83 (155)
T 3u53_A            4 RACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYV   83 (155)
T ss_dssp             CEEEEEEEEECCCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEE
T ss_pred             eEeEEEEEccccccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeecC
Confidence            45666666         445689999998877899999999999999999999999999999854322211111111111


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhh
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN  160 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~  160 (173)
                      ...            ......+|++........+..     .+|+.+++|++++++.+++.   .+..+.+++.+.+++.
T Consensus        84 ~~~------------~~~~~~~~~~~~~~~~~~~~~-----~~E~~~~~W~~~~ea~~~~~---~~~~~~~L~~a~~~L~  143 (155)
T 3u53_A           84 ARN------------KPKTVIYWLAEVKDYDVEIRL-----SHEHQAYRWLGLEEACQLAQ---FKEMKAALQEGHQFLC  143 (155)
T ss_dssp             ETT------------EEEEEEEEEEEESCTTCCCCC-----CTTEEEEEEECHHHHHHHHC---SHHHHHHHHHHHHHHH
T ss_pred             CCc------------ceeEEEEEEEEEeccCCccCC-----CcceeEEEEeEHHHHHHHcC---CHHHHHHHHHHHHHHh
Confidence            111            111234555555543333222     25899999999999998764   3556667776666665


Q ss_pred             h
Q 030711          161 E  161 (173)
Q Consensus       161 ~  161 (173)
                      +
T Consensus       144 ~  144 (155)
T 3u53_A          144 S  144 (155)
T ss_dssp             H
T ss_pred             C
Confidence            5

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.91  E-value=5.8e-24  Score=143.57  Aligned_cols=124  Identities=23%  Similarity=0.342  Sum_probs=77.4

Q ss_pred             cceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      +.+++++|+ .+++|||++|..  |.|.+|||++++|||+.+||+||++||||+.+... ..+.. ..+.++...     
T Consensus         4 ~~aag~vv~-~~~~vLL~~r~~--g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~-~~l~~-~~~~~~~~~-----   73 (134)
T 3i7u_A            4 EFSAGGVLF-KDGEVLLIKTPS--NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEIL-DYIGE-IHYWYTLKG-----   73 (134)
T ss_dssp             EEEEEEEEE-ETTEEEEEECTT--SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEE-EEEEEEETT-----
T ss_pred             EEEEEEEEE-ECCEEEEEEeCC--CcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEe-eeeee-eeEEecCCC-----
Confidence            345555555 568999998764  78999999999999999999999999999985322 11111 111111110     


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~  157 (173)
                           .......++|.+.....  .+..     .+|+.+++|++++++.+++.   .+..+.+++.+.+
T Consensus        74 -----~~~~~~~~~f~~~~~~~--~~~~-----~~E~~~~~W~~~~e~~~~l~---~~~~r~il~~a~~  127 (134)
T 3i7u_A           74 -----ERIFKTVKYYLMKYKEG--EPRP-----SWEVKDAKFFPIKEAKKLLK---YKGDKEIFEKALK  127 (134)
T ss_dssp             -----EEEEEEEEEEEEEEEEE--CCCC-----CTTSSEEEEEEHHHHHHHBC---SHHHHHHHHHHHH
T ss_pred             -----ceEEEEEEEEEEEEcCC--cCcC-----ChhheEEEEEEHHHHhhhcC---ChHHHHHHHHHHH
Confidence                 00111234555554432  2221     14889999999999999764   2344444444333

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.90  E-value=8.9e-23  Score=142.21  Aligned_cols=155  Identities=39%  Similarity=0.705  Sum_probs=105.4

Q ss_pred             CCCCCCCccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhh--hhccCCccccc
Q 030711            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYD   78 (173)
Q Consensus         1 m~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~   78 (173)
                      |..- ..+|.+|++++++.++++||++|.. ++.|.+|||++++|||+.+||+||+.||||+.+..+  +.....+..+.
T Consensus         1 m~~~-~~~~~~v~~~i~~~~~~vLl~~r~~-~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~   78 (164)
T 2kdv_A            1 MIDD-DGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYK   78 (164)
T ss_dssp             CCCS-SSEEEEEEEEEECTTSEEEEEEETT-CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEE
T ss_pred             CCCC-CCCCcEEEEEEEccCCEEEEEEEcC-CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEe
Confidence            5543 3589999999999999999999886 789999999999999999999999999999985432  22222222233


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhh
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY  158 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~  158 (173)
                      ++......   .....+.++..++|++.+......+.+.. .+.+|+.+++|++++++.+.+.+.+.+.+..++..+.+.
T Consensus        79 ~~~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~l~~-~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~~~  154 (164)
T 2kdv_A           79 LPKRLVRW---DTKPVCIGQKQKWFLLQLVSGDAEINMQT-SSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASV  154 (164)
T ss_dssp             CCTTTCCT---TSSSCCCEEEEEEEEEEESSCGGGCCSCS-SSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             cCcceeee---ccCcccccceeEEEEEEecCCccccccCC-CCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence            33321100   00112233456778887765443333321 123589999999999988765554457888888887776


Q ss_pred             hhh
Q 030711          159 LNE  161 (173)
Q Consensus       159 ~~~  161 (173)
                      +..
T Consensus       155 l~~  157 (164)
T 2kdv_A          155 VMS  157 (164)
T ss_dssp             HHH
T ss_pred             HhH
Confidence            654

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.88  E-value=7.7e-22  Score=134.78  Aligned_cols=135  Identities=21%  Similarity=0.359  Sum_probs=88.0

Q ss_pred             CCCCCCCccceeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhh-hccCCc----
Q 030711            1 MDGLPSGYRPNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII-AEVPNW----   74 (173)
Q Consensus         1 m~~~~~~~~~~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~-~~~~~~----   74 (173)
                      |..|+...+.+|++++++.+ +++||++|...+|.|.+|||++++||++.+||+||++||||+.+.... ..+...    
T Consensus         1 m~~m~~~~~~~v~~~i~~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   80 (150)
T 2o1c_A            1 MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVE   80 (150)
T ss_dssp             -CCCCCBCSEEEEEEEEETTTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEE
T ss_pred             CCcccccCceEEEEEEEeCCCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceee
Confidence            66665334567777888875 899999988767899999999999999999999999999999954321 111110    


Q ss_pred             ------ccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHH
Q 030711           75 ------LTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTY  148 (173)
Q Consensus        75 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~  148 (173)
                            ..+.+++.            ......++|.+...... ..      ..+|+.+++|++++++.++...   +..
T Consensus        81 ~~~~~~~~~~~~~~------------~~~~~~~~f~~~~~~~~-~~------~~~E~~~~~W~~~~el~~~~~~---~~~  138 (150)
T 2o1c_A           81 FEIFSHLRHRYAPG------------VTRNTESWFCLALPHER-QI------VFTEHLAYKWLDAPAAAALTKS---WSN  138 (150)
T ss_dssp             EECCGGGGGGBCTT------------CCEEEEEEEEEEESSCC-CC------CCSSSSCEEEEEHHHHHHHCSC---HHH
T ss_pred             eeeecccccccCCC------------CcceEEEEEEEEcCCCC-Cc------ChhHhhccEeecHHHHHhhhcC---HHH
Confidence                  01112211            01123455655554321 11      1158889999999999997653   555


Q ss_pred             HHHHHHHhh
Q 030711          149 EEVMRTFRP  157 (173)
Q Consensus       149 ~~~~~~l~~  157 (173)
                      ..+++.+.+
T Consensus       139 ~~~l~~~~~  147 (150)
T 2o1c_A          139 RQAIEQFVI  147 (150)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHH
Confidence            566655443

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.88  E-value=4.9e-22  Score=134.18  Aligned_cols=129  Identities=24%  Similarity=0.473  Sum_probs=85.7

Q ss_pred             cceeEEEEEec---CCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhc--cCCcccccCCccc
Q 030711            9 RPNVGVCLINS---DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAE--VPNWLTYDFPPAV   83 (173)
Q Consensus         9 ~~~v~~~i~~~---~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~--~~~~~~~~~~~~~   83 (173)
                      +.++++++++.   ++++||++|+..++.|.+|||++++||++.+||+||++||||+.+..+...  ......+.++.  
T Consensus         3 ~~~~~~vi~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~--   80 (138)
T 1ktg_A            3 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKG--   80 (138)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETT--
T ss_pred             eEEEEEEEEEecCCCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCC--
Confidence            45677777765   468999998865679999999999999999999999999999974322111  11111122111  


Q ss_pred             ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhh
Q 030711           84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN  160 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~  160 (173)
                                  ......+|.+...... . .    .+.+|+.++.|++++++.++..   .+....+++.+.++++
T Consensus        81 ------------~~~~~~~f~~~~~~~~-~-~----~~~~e~~~~~W~~~~el~~~~~---~~~~~~~l~~~~~~l~  136 (138)
T 1ktg_A           81 ------------KPKSVKYWLAKLNNPD-D-V----QLSHEHQNWKWCELEDAIKIAD---YAEMGSLLRKFSAFLA  136 (138)
T ss_dssp             ------------EEEEEEEEEEEECSCC-C-C----CCCTTEEEEEEECHHHHHHHHC---CHHHHHHHHHHHHHHH
T ss_pred             ------------CceEEEEEEEEecCCc-c-c----CCCchhcEeEeccHHHHHHhhc---cchHHHHHHHHHHHhh
Confidence                        0112456666655421 1 1    1236889999999999999865   2566666666666553

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.87  E-value=1.3e-21  Score=133.91  Aligned_cols=131  Identities=22%  Similarity=0.261  Sum_probs=86.7

Q ss_pred             ceeEEEEE---ecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcc-----cccCCc
Q 030711           10 PNVGVCLI---NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWL-----TYDFPP   81 (173)
Q Consensus        10 ~~v~~~i~---~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~-----~~~~~~   81 (173)
                      .+|.++++   +.++++||++|.. +|.|.+|||++++|||+.+||+||++||||+.+......+....     .+.++.
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   84 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNK   84 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESS-SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSS
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcC-CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCC
Confidence            45555554   4567899999887 58999999999999999999999999999998533211111100     111111


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhhh
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE  161 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (173)
                      .             .....++|.+........+.+     .+|+.+++|++++++.++..   .+..+.++..+.+++..
T Consensus        85 ~-------------~~~~~~~f~~~~~~~~~~~~~-----~~E~~~~~W~~~~el~~~~~---~~~~~~~l~~~~~~l~~  143 (149)
T 3son_A           85 P-------------YVVPEYCFAIDLTSCSYQVTL-----SLEHSELRWVSYESAIQLLE---WDSNKTALYELNERLKN  143 (149)
T ss_dssp             C-------------SEEEEEEEEEECTTTGGGCCC-----CTTEEEEEEECHHHHHHHCC---CHHHHHHHHHHHHHHHT
T ss_pred             c-------------eEeEEEEEEEEcCCCCCcccC-----CCceeeEEEeCHHHHHHHhc---CHHHHHHHHHHHHHHhh
Confidence            1             011234555555532223332     15889999999999999865   36777777777777655


Q ss_pred             c
Q 030711          162 N  162 (173)
Q Consensus       162 ~  162 (173)
                      +
T Consensus       144 ~  144 (149)
T 3son_A          144 N  144 (149)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.87  E-value=1.8e-21  Score=133.86  Aligned_cols=126  Identities=20%  Similarity=0.334  Sum_probs=86.3

Q ss_pred             CCccceeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCc
Q 030711            6 SGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (173)
Q Consensus         6 ~~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (173)
                      ..++.+|+++|++.++++||++|..    .+|.|.+|||++++||++.+||+||+.||||+.+..... +.. ..+.++.
T Consensus         5 ~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~-~~~-~~~~~~~   82 (153)
T 3grn_A            5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDI-AGQ-VNFELTE   82 (153)
T ss_dssp             SCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSE-EEE-EEEECSS
T ss_pred             CceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceE-EEE-EEEecCC
Confidence            4478888889999899999999986    348999999999999999999999999999998532211 111 1122221


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh-hhcCchHHHHHHHHHhh
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA-VDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~-~~~~~~~~~~~~~~l~~  157 (173)
                      .              .....+|.+.....  ....     .+|+.+++|++++++.++. .   .+....+++.+.+
T Consensus        83 ~--------------~~~~~~~~~~~~~~--~~~~-----~~e~~~~~W~~~~el~~~~~~---~~~~~~~l~~l~~  135 (153)
T 3grn_A           83 K--------------KVIAIVFDGGYVVA--DVKL-----SYEHIEYSWVSLEKILGMETL---PAYFRDFFERFDR  135 (153)
T ss_dssp             C--------------EEEEEEEEEEECCC--CCCC-----CTTEEEEEEECHHHHTTCSSS---CHHHHHHHHHHHH
T ss_pred             c--------------eEEEEEEEEEecCC--cEec-----CCCcceEEEEEHHHhhhcccc---hHHHHHHHHHHhc
Confidence            1              01123344333322  2221     1588899999999999975 4   3666666666543

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.87  E-value=7e-22  Score=134.35  Aligned_cols=129  Identities=21%  Similarity=0.333  Sum_probs=84.6

Q ss_pred             ccceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (173)
                      .+..+++++++.++++||++|..   ++|.|.||||++++||++.+||+||+.||||+.+............+.++.   
T Consensus         7 ~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~---   83 (144)
T 3r03_A            7 ILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDT---   83 (144)
T ss_dssp             EEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS---
T ss_pred             eeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCC---
Confidence            55666777888889999999885   358999999999999999999999999999998533211111111222221   


Q ss_pred             cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhhh
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE  161 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (173)
                                   ....+++|.+.......      ...|..++.|++++++.++..+   +..+.+++.+.+....
T Consensus        84 -------------~~~~~~~~~~~~~~~~~------~~~e~~~~~W~~~~el~~~~~~---~~~~~~l~~~~~~~~~  138 (144)
T 3r03_A           84 -------------FHLLMPLYACRSWRGRA------TAREGQTLAWVRAERLREYPMP---PADLPLIPILQDWLEG  138 (144)
T ss_dssp             -------------SEEEEEEEEECCCBSCC------CCCSSCEEEEECGGGGGGSCCC---TTTTTHHHHHHHHC--
T ss_pred             -------------eEEEEEEEEEEecCCcc------CCCCcceEEEEeHHHhccCCCC---cchHHHHHHHhCcccc
Confidence                         12233444444322221      2257889999999999997653   4555555555555444

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.87  E-value=1.5e-21  Score=138.92  Aligned_cols=148  Identities=17%  Similarity=0.214  Sum_probs=94.8

Q ss_pred             ccceeEEEEEecCCcEEEEEecC----CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCC-cccccCCc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPN-WLTYDFPP   81 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~l-PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~-~~~~~~~~   81 (173)
                      ++++|+++|++.++++||++|..    ++|.|.+ |||++++|||+.+||+||++||||+.+..+...+.. .....+++
T Consensus        31 ~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  110 (190)
T 1hzt_A           31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPS  110 (190)
T ss_dssp             CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTT
T ss_pred             eEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCC
Confidence            55788888898889999999874    3689999 999999999999999999999999996443111111 11111221


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC---chHHHHHHHHHhhh
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK---RPTYEEVMRTFRPY  158 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~---~~~~~~~~~~l~~~  158 (173)
                      ...           ......+|.+....   ....    +++|+.+++|++++++.+++....   .+.+..+++.+.+.
T Consensus       111 ~~~-----------~~~~~~~f~~~~~~---~~~~----~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~  172 (190)
T 1hzt_A          111 GIV-----------ENEVCPVFAARTTS---ALQI----NDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREAR  172 (190)
T ss_dssp             SCE-----------EEEECCEEEEEBCS---CCCC----CTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHH
T ss_pred             CCc-----------ceEEEEEEEEecCC---CCcC----CccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHH
Confidence            110           01112445554432   2222    336889999999999999865432   36667777777665


Q ss_pred             hhhcCcccccccCCC
Q 030711          159 LNENGIAAKCKSAKW  173 (173)
Q Consensus       159 ~~~~~~~~~~~~~~~  173 (173)
                      ...++........||
T Consensus       173 ~~~~~~~~~~~~~~~  187 (190)
T 1hzt_A          173 KRLSAFTQLKLEHHH  187 (190)
T ss_dssp             HHHHHTTSCCC----
T ss_pred             Hhhhhhhhhhhhccc
Confidence            555445555555554

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.86  E-value=3.2e-21  Score=138.05  Aligned_cols=144  Identities=15%  Similarity=0.216  Sum_probs=82.8

Q ss_pred             CccceeEEEEEecCC-cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccc-ccCCcccc
Q 030711            7 GYRPNVGVCLINSDS-QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLT-YDFPPAVK   84 (173)
Q Consensus         7 ~~~~~v~~~i~~~~~-~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~-~~~~~~~~   84 (173)
                      .++.++++++++.++ +|||+++.. .|.|.+|||++++|||+.+||+||++||||+....+......... +..+....
T Consensus        43 ~~h~~~~~vv~~~~~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  121 (197)
T 3fcm_A           43 IAHLTSSAFAVNKERNKFLMIHHNI-YNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIK  121 (197)
T ss_dssp             SEEEEEEEEEECTTSCEEEEEEETT-TTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEE
T ss_pred             CccEEEEEEEEECCCCEEEEEEecC-CCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccc
Confidence            477788888888875 999999875 689999999999999999999999999999982221111111001 11111000


Q ss_pred             cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhhhcC
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENG  163 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~  163 (173)
                      .  ....  ........+|++..... ....    .+++|+.+++|++++++.+++..   +....+++.+.+++..+.
T Consensus       122 ~--~~~~--~~~~~~~~~~~~~~~~~-~~~~----~~~~E~~~~~W~~~~el~~~~~~---~~~~~il~~~~~~l~~~~  188 (197)
T 3fcm_A          122 R--GKYV--SSHLHLNLTYLIECSED-ETLM----LKEDENSGVMWIPFNEISKYCSE---PHMIPIYEKLINKLKTQS  188 (197)
T ss_dssp             T--TEEE--CCEEEEEEEEEEECCTT-SCCC----CCC----CEEEEEGGGHHHHCCC---GGGHHHHHHHHHHHHC--
T ss_pred             c--Cccc--CCceeEEEEEEEEeCCC-cccC----CCcccccceEEccHHHHHhhcCC---HHHHHHHHHHHHHHHhcc
Confidence            0  0000  00000123444444322 1122    23368899999999999998653   344445555555555543

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.86  E-value=8.9e-21  Score=126.05  Aligned_cols=120  Identities=21%  Similarity=0.313  Sum_probs=81.2

Q ss_pred             ceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      .++++++++.++++||++|..  |.|.+|||++++|||+.+||+||+.||||+.+..... +.. ..+.++..       
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~--g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~-~~~~~~~~-------   71 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLP-LYP-TRYVNPKG-------   71 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEE-EEE-EEEECTTS-------
T ss_pred             eEEEEEEEcCCCEEEEEEECC--CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccE-EeE-EEEecCCc-------
Confidence            467778888889999999876  8899999999999999999999999999998533211 111 11221110       


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~  157 (173)
                             .....+|.+......  .     ....|+.+++|++++++.++...   +....+++.+.+
T Consensus        72 -------~~~~~~~~~~~~~~~--~-----~~~~e~~~~~w~~~~el~~~~~~---~~~~~~l~~~~~  122 (126)
T 1vcd_A           72 -------VEREVHWFLMRGEGA--P-----RLEEGMTGAGWFSPEEARALLAF---PEDLGLLEVALE  122 (126)
T ss_dssp             -------CEEEEEEEEEEEESC--C-----CCCTTCCEEEEECHHHHHHHBCS---HHHHHHHHHHHH
T ss_pred             -------eEEEEEEEEEEcCCC--C-----CCCcceeeeEEcCHHHHHHhhcC---hhHHHHHHHHHH
Confidence                   112345555443322  1     12257889999999999997542   455555555443

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.85  E-value=5.1e-21  Score=130.60  Aligned_cols=116  Identities=23%  Similarity=0.230  Sum_probs=74.2

Q ss_pred             ccceeEEEEEecCCcEEEEEecCCC---CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNVP---GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~~---~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (173)
                      .+.+|++++++.++++||+++.+.+   +.|.+|||++++|||+.+||+||++||||+.+..+.. +..+  +..+.   
T Consensus         4 ~~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~~--~~~~~---   77 (145)
T 2w4e_A            4 GPRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVP-LPGF--YPQPS---   77 (145)
T ss_dssp             CCEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEE-CCCB--BSCTT---
T ss_pred             eCCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEE-EecC--cCCCC---
Confidence            3457888888899999888765432   4899999999999999999999999999998543222 2111  11111   


Q ss_pred             cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                                ......++|.+..... ....    .+++|+.++.|++++++.+++....
T Consensus        78 ----------~~~~~~~~f~~~~~~~-~~~~----~~~~E~~~~~w~~~~el~~~~~~~~  122 (145)
T 2w4e_A           78 ----------ISGVVFYPLLALGVTL-GAAQ----LEDTETIERVVLPLAEVYRMLEAGE  122 (145)
T ss_dssp             ----------TCCCEEEEEEEEEEEE-C------------CEEEEEEEHHHHHHHHHHTC
T ss_pred             ----------ccCceEEEEEEEeccc-CCCC----CCCCCeEEEEEEeHHHHHHHHHcCC
Confidence                      0111234555542221 1111    2336889999999999999876643

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.85  E-value=9e-21  Score=128.48  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=77.1

Q ss_pred             cceeEEEEEecCCcEEEEEecC-----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLN-----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAV   83 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~-----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   83 (173)
                      ...+++++.+ ++++||++|..     .+|.|.+|||++++||++.+||+||+.||||+.+.... .+.. ..+.++.. 
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~-~~~~-~~~~~~~~-   81 (140)
T 3gwy_A            6 IEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGE-KLLT-VHHTYPDF-   81 (140)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEE-EEEE-EECCCSSC-
T ss_pred             EEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEece-EEEE-EEEEeCCc-
Confidence            3344445555 89999999985     45789999999999999999999999999999853321 1111 12222211 


Q ss_pred             ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711           84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~  157 (173)
                                   .....+|.+.....  ..      ...|+.+++|++++++.++...   +....+++.+.+
T Consensus        82 -------------~~~~~~f~~~~~~~--~~------~~~E~~~~~W~~~~el~~~~~~---~~~~~il~~~~~  131 (140)
T 3gwy_A           82 -------------EITMHAFLCHPVGQ--RY------VLKEHIAAQWLSTREMAILDWA---EADKPIVRKISE  131 (140)
T ss_dssp             -------------CEEEEEEEEEECCS--CC------CCCSSCEEEEECHHHHTTSCBC---GGGHHHHHHHHC
T ss_pred             -------------eEEEEEEEEEecCC--cc------cccccceeEeccHHHHhhCCCC---cccHHHHHHHHh
Confidence                         11234555554432  21      1257889999999999997653   455555554443

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.85  E-value=2.4e-21  Score=133.54  Aligned_cols=129  Identities=19%  Similarity=0.245  Sum_probs=87.1

Q ss_pred             ccceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      ....+++++++.+++|||++|.+.  +|.|.+|||++++|||+.+||+||++||||+.+... ..+..   +....    
T Consensus        19 ~~~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~~~---~~~~~----   90 (156)
T 3gg6_A           19 VCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPE-TLLSV---EERGP----   90 (156)
T ss_dssp             CEEEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEE-EEEEE---EESST----
T ss_pred             eEEEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEee-eEEEE---EcCCC----
Confidence            445566677888999999998863  579999999999999999999999999999985322 11111   11000    


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhhh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE  161 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (173)
                                 +...++|.+...........   .+++|+.++.|++++++.+++..   ..+..++..+..++..
T Consensus        91 -----------~~~~~~f~~~~~~~~~~~~~---~~~~E~~~~~W~~~~el~~~~~~---~~~~~~l~~~~~~~~~  149 (156)
T 3gg6_A           91 -----------SWVRFVFLARPTGGILKTSK---EADAESLQAAWYPRTSLPTPLRA---HDILHLVELAAQYRQQ  149 (156)
T ss_dssp             -----------TEEEEEEEEEEEEECCCCGG---GCSSSCSEEEEEETTSCCSSBSC---THHHHHHHHHHHHHHH
T ss_pred             -----------CEEEEEEEEEeeCCeeccCC---CCCcceeeeEEEcHHHCcccccc---hhHHHHHHHHHHHhhc
Confidence                       11235566655433222111   23368899999999999987654   4555666665555544

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.85  E-value=2.9e-20  Score=128.29  Aligned_cols=118  Identities=25%  Similarity=0.363  Sum_probs=81.5

Q ss_pred             ccceeEEEEEecCCcEEEEEecC------CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~------~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (173)
                      .+.+++++|++.++++||++|.+      .+|.|.+|||++++||++.+||+||+.||||+.+.... .+.. ..+.+++
T Consensus        12 ~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~-~l~~-~~~~~~~   89 (159)
T 1sjy_A           12 ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVK-FLGA-YLGRFPD   89 (159)
T ss_dssp             CEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEE-EEEE-EEEECTT
T ss_pred             EEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeE-EEEE-EecccCC
Confidence            56777778888889999999985      55899999999999999999999999999999953321 1111 1111222


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                      .             .....++|.+...... .+..   .+.+|+.++.|++++++.+++.+..
T Consensus        90 ~-------------~~~~~~~f~~~~~~~~-~~~~---~~~~E~~~~~W~~~~el~~~~~~~~  135 (159)
T 1sjy_A           90 G-------------VLILRHVWLAEPEPGQ-TLAP---AFTDEIAEASFVSREDFAQLYAAGQ  135 (159)
T ss_dssp             S-------------CEEEEEEEEEEECSSC-CCCC---CCCSSEEEEEEECHHHHHHHHHTTC
T ss_pred             C-------------ceEEEEEEEEEccCCC-cccc---CCCCceeEEEEecHHHHHHhhhccc
Confidence            1             0112355555554322 1221   0236889999999999999877653

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.85  E-value=5.6e-21  Score=132.04  Aligned_cols=125  Identities=18%  Similarity=0.296  Sum_probs=81.9

Q ss_pred             ccceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (173)
                      .+..+++++++.++++||++|..   ++|.|.||||++++||++.+||+||+.||||+.+............+.++..  
T Consensus        28 ~~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~--  105 (158)
T 3hhj_A           28 LLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETF--  105 (158)
T ss_dssp             EEEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSC--
T ss_pred             eEEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCc--
Confidence            44556667788889999999885   3579999999999999999999999999999985332111011112222211  


Q ss_pred             cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~  157 (173)
                                    ...++++.+.......      ...|..++.|++++++.++...   +....+++.+.+
T Consensus       106 --------------~~~~~~~~~~~~~~~~------~~~e~~~~~W~~~~el~~~~~~---~~~~~il~~~~~  155 (158)
T 3hhj_A          106 --------------HLLMPLYFCSHYKGVA------QGREGQNLKWIFINDLDKYPMP---EADKPLVQVLKN  155 (158)
T ss_dssp             --------------EEEEEEEEESCCBSCC------CCTTSCEEEEEEGGGGGGSCCC---TTTHHHHHHHHH
T ss_pred             --------------EEEEEEEEEEECCCcc------CCccccceEEEcHHHHhhCCCC---cchHHHHHHHHH
Confidence                          2234444444322221      2257889999999999987653   444455544443

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.85  E-value=8.2e-21  Score=129.44  Aligned_cols=132  Identities=20%  Similarity=0.398  Sum_probs=85.3

Q ss_pred             ceeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           10 PNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        10 ~~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      +.++++|++.+ +++||++|.. +|.|.+|||++++|||+.+||+||++||||+.+..+... ..+....          
T Consensus         5 ~~~~~~i~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~-~~~~~~~----------   72 (146)
T 2jvb_A            5 PVRGAAIFNENLSKILLVQGTE-SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDD-NQFIERN----------   72 (146)
T ss_dssp             CCEEEEEBCTTSSEEEEECCSS-SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCS-SCEEEEE----------
T ss_pred             EEEEEEEEeCCCCEEEEEEEcC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhccc-ccccccc----------
Confidence            34566777775 8999998765 689999999999999999999999999999985432111 1111100          


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc--CchHHHHHHHHHhhhhhhc
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY--KRPTYEEVMRTFRPYLNEN  162 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~--~~~~~~~~~~~l~~~~~~~  162 (173)
                            ..+...++|++...........   ...+|+.++.|++++++.+++.+.  ....+...+..+..++..+
T Consensus        73 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~l~~~~~~~  139 (146)
T 2jvb_A           73 ------IQGKNYKIFLISGVSEVFNFKP---QVRNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPLSMWLRHQ  139 (146)
T ss_dssp             ------ETTEEEEEEEECCCCSSSCCCC---CCSSSCCCEEEEEHHHHHTGGGCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             ------cCCceEEEEEEEeccccccCCc---CCcchhheeEEeEHHHHHhhhcccchhhhhHHHHHHHHHHHHHHh
Confidence                  0111223333332221111111   123688999999999999987653  2245566677777777653

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.84  E-value=1.1e-20  Score=130.71  Aligned_cols=139  Identities=16%  Similarity=0.078  Sum_probs=82.6

Q ss_pred             ccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCc--ccccCCccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNW--LTYDFPPAVKT   85 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~--~~~~~~~~~~~   85 (173)
                      .+.+++++|++ +++|||++|.. +|.|.+|||++++|||+.+||+||++||||+.+... ..+..+  ..+.++.....
T Consensus         5 ~~~~v~~vi~~-~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~~~~   81 (159)
T 3f6a_A            5 RHFTVSVFIVC-KDKVLLHLHKK-AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLY-NPIDINLKKSCDLSGEKLL   81 (159)
T ss_dssp             SCEEEEEEEEE-TTEEEEEECSS-SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEEC-CCCCHHHHHHHHHTTCEEE
T ss_pred             ceEEEEEEEEE-CCEEEEEEcCC-CCeEECCccCccCCCCHHHHHHHHHHHHhCCCceec-ccccccccccccccccccc
Confidence            56677777777 78999999886 789999999999999999999999999999985322 111110  00111111100


Q ss_pred             c-----cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhh
Q 030711           86 K-----VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY  158 (173)
Q Consensus        86 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~  158 (173)
                      .     ..... .........+|.+.....  ....    +.+|+.+++|++++++.++...  ...+..+.+.+.+.
T Consensus        82 ~~p~~~~~~~~-~~~~~~~~~~f~~~~~~~--~~~~----~~~E~~~~~W~~~~el~~~~~~--~~~~~~l~~~~~~~  150 (159)
T 3f6a_A           82 INPIHTILGDV-SPNHSHIDFVYYATTTSF--ETSP----EIGESKILKWYSKEDLKNAHNI--QENILVMATEALDL  150 (159)
T ss_dssp             CCCSEEEEECS-SSSSCEEEEEEEEECSCS--CCCC----CTTSCCCEEEECSSSSTTCSSS--CHHHHHHHHHHHHH
T ss_pred             cCccccccccC-CCCceEEEEEEEEEeCCC--CcCC----CCCcccceEEeeHHHHhhCcCC--ChhHHHHHHHHHHH
Confidence            0     00000 000011223455554432  2222    2368899999999999987521  24555555444443

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.84  E-value=7.2e-21  Score=131.52  Aligned_cols=125  Identities=16%  Similarity=0.219  Sum_probs=80.5

Q ss_pred             ccceeEEEEEecCCcEEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      .+.+|+++|++ +++|||++|.+  .++.|.||||++++||++.+||+||++||||+.+.... .+.. ..+.+....  
T Consensus        28 ~~~~v~~vi~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~~~-~~~~~~~~~--  102 (157)
T 4dyw_A           28 PRVGCGAAIVR-DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERAT-LLCV-VDHIDAANG--  102 (157)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCE-EEEE-EEEEETTTT--
T ss_pred             ceeEEEEEEEE-CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCc-EEEE-EEeeccCCC--
Confidence            55666667777 79999999986  35899999999999999999999999999999853221 1111 111111100  


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFR  156 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~  156 (173)
                                ......+|.+.....  ....   .+++|+..++|++++++.+.+.    +....+++.++
T Consensus       103 ----------~~~~~~~f~~~~~~~--~~~~---~~~~E~~~~~W~~~~el~~~l~----~~~~~~l~~l~  154 (157)
T 4dyw_A          103 ----------EHWVAPVYLAHAFSG--EPRV---VEPDRHEALGWFALDDLPQPLT----HATRIALEQVT  154 (157)
T ss_dssp             ----------EEEEEEEEEESEEES--CCCC---SCTTTEEEEEEEETTSCCSSBC----HHHHHHHHHHC
T ss_pred             ----------cEEEEEEEEEEEcCC--Cccc---CCCCcEeEEEEECHHHcccccC----HHHHHHHHHHH
Confidence                      001123444433322  2211   1336889999999999998543    55666665554

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.84  E-value=9.7e-21  Score=131.39  Aligned_cols=126  Identities=17%  Similarity=0.237  Sum_probs=81.8

Q ss_pred             CccceeEEEEEecC-CcEEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccc
Q 030711            7 GYRPNVGVCLINSD-SQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAV   83 (173)
Q Consensus         7 ~~~~~v~~~i~~~~-~~vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   83 (173)
                      ..+.++.++|++.+ ++|||++|..  +.|.|.+|||++++||++.+||+||+.||||+.+..... +.. ..+.++.. 
T Consensus         8 ~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~-~~~~~~~~-   84 (161)
T 3exq_A            8 PVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTF-CGT-CEWFDDDR-   84 (161)
T ss_dssp             CEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEE-EEE-EEEECSSC-
T ss_pred             CceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcE-EEE-EecccCCC-
Confidence            36667777777776 7999999885  346799999999999999999999999999998532211 111 11211111 


Q ss_pred             ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711           84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~  157 (173)
                                   +.....+++.+......+.      ..|..+++|++++++.++...   +....+++.+..
T Consensus        85 -------------~~~~~~~~~~~~~~~~~~~------~~e~~~~~W~~~~el~~~~~~---~~~~~~l~~~~~  136 (161)
T 3exq_A           85 -------------QHRKLGLLYRASNFTGTLK------ASAEGQLSWLPITALTRENSA---ASLPEFLQVFTG  136 (161)
T ss_dssp             -------------SSEEEEEEEEECCEESCCC------GGGTTTEEEECGGGCCTTTBC---TTHHHHHHHHTT
T ss_pred             -------------CeEEEEEEEEEeccCCccC------CCccceEEEeeHHHhhhCccC---hHHHHHHHHHhh
Confidence                         1123444444443222222      246788999999999987653   455555555443

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.84  E-value=2.7e-20  Score=133.41  Aligned_cols=129  Identities=23%  Similarity=0.339  Sum_probs=82.1

Q ss_pred             ccceeEEEEEec-CCcEEEEEecC-CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            8 YRPNVGVCLINS-DSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         8 ~~~~v~~~i~~~-~~~vLl~~r~~-~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      .+.+|++++++. +++|||++|.. .+|.|.+|||++++||++.+||+||++||||+.+. ....+.....+.++...  
T Consensus        25 ~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~-~~~l~~~~~~~~~~~~~--  101 (199)
T 3h95_A           25 HQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSE-FRSVLSIRQQHTNPGAF--  101 (199)
T ss_dssp             -CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEE-EEEEEEEEECC--------
T ss_pred             ccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccc-cceEEEEEeeecCCCCc--
Confidence            556677777765 48999998875 35899999999999999999999999999999953 22222211112222211  


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFR  156 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~  156 (173)
                                 .....+|++.+.........    +++|+.++.|++++++.++...  .+....++..+.
T Consensus       102 -----------~~~~~~~~~~~~~~~~~~~~----~~~E~~~~~W~~~~el~~~~~~--~~~~~~~~~~~~  155 (199)
T 3h95_A          102 -----------GKSDMYIICRLKPYSFTINF----CQEECLRCEWMDLNDLAKTENT--TPITSRVARLLL  155 (199)
T ss_dssp             --------------CEEEEEEEEESCCCCCC----CTTTEEEEEEEEHHHHHHCSSB--CHHHHHHHHHHH
T ss_pred             -----------eeEEEEEEEEEcCCCcccCC----CccceeeeEEEeHHHHhhhhhc--ChHHHHHHHHHH
Confidence                       11235566665543333332    3468999999999999987532  245555444433

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.83  E-value=4e-20  Score=128.58  Aligned_cols=126  Identities=21%  Similarity=0.378  Sum_probs=78.2

Q ss_pred             ccceeEEEEEecCCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCC-----ccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPN-----WLTYD   78 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~-----~~~~~   78 (173)
                      .+..+++++++.++++||++|..    .+|.|.+|||++++||++.+||+||+.||||+.+... .....     ...+.
T Consensus        26 ~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~  104 (165)
T 3oga_A           26 RQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILS-DITPWTFRDDIRIKT  104 (165)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEE-EEEEEEEEEEEEEEE
T ss_pred             ceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCcccc-ceeeeeeecceeeEe
Confidence            45566667778889999999885    3489999999999999999999999999999985321 11110     01123


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHH
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMR  153 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~  153 (173)
                      ++......           ....++++...........     .+|+.+++|++++++.++...   +....+++
T Consensus       105 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-----~~E~~~~~W~~~~el~~~~~~---~~~~~~l~  160 (165)
T 3oga_A          105 YADGRQEE-----------IYMIYLIFDCVSANRDICI-----NDEFQDYAWVKPEELALYDLN---VATRHTLA  160 (165)
T ss_dssp             C--CCEEE-----------EEEEEEEEEEEESCCCCCC-----CTTEEEEEEECGGGGGGSCBC---HHHHHHHH
T ss_pred             cCCCCcee-----------EEEEEEEEEeeccCCCccC-----CchheeeEEccHHHHhhCCCC---HHHHHHHH
Confidence            33322110           1122333333322222221     158889999999999997542   44444443

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.83  E-value=1.4e-20  Score=132.95  Aligned_cols=116  Identities=21%  Similarity=0.225  Sum_probs=77.5

Q ss_pred             cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +.+|++++++.++++||++|.+   .++.|.+|||++++|||+.+||+||+.||||+.+..+. .+..+.  ..+.    
T Consensus        41 ~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~l~~~~--~~~~----  113 (182)
T 2yvp_A           41 VAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLI-PLPSFH--PQPS----  113 (182)
T ss_dssp             CEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEE-ECCCBC--SCTT----
T ss_pred             CCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEE-EEEEEe--CCCC----
Confidence            3467778888889999999875   35799999999999999999999999999999853322 222110  0010    


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                               ......++|.+..........    .+.+|+.++.|++++++.+++....
T Consensus       114 ---------~~~~~~~~f~~~~~~~~~~~~----~~~~E~~~~~W~~~~el~~~~~~~~  159 (182)
T 2yvp_A          114 ---------FTAVVFHPFLALKARVVTPPT----LEEGELLESLELPLTEVYALLAKGE  159 (182)
T ss_dssp             ---------TBCCEEEEEEECSCEECSCCC----CCTTCCEEEEEEEHHHHHHHHHTTC
T ss_pred             ---------ccccEEEEEEEeccccCCCCC----CCCCceEEEEEEEHHHHHHHHHcCC
Confidence                     011123444443221111211    2346889999999999999877653

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.83  E-value=2.1e-20  Score=128.09  Aligned_cols=124  Identities=23%  Similarity=0.351  Sum_probs=82.3

Q ss_pred             cceeEEEEEecCCcEEEEEecCC---CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~---~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +..+++++++.++++||++|...   +|.|.||||++++||++.+||+||+.||||+.+..... +.. ..+.++..   
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~-~~~~~~~~---   95 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGEL-KLA-CTHSYGDV---   95 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCE-EEE-EEEEETTE---
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCce-EEE-EEEecCCC---
Confidence            34566677788899999998863   48999999999999999999999999999998532221 111 12222221   


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL  159 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~  159 (173)
                                   ...++++.+......      ....|+.++.|++++++.++...   +....+++.+.+.+
T Consensus        96 -------------~~~~~~~~~~~~~~~------~~~~e~~~~~W~~~~el~~~~~~---~~~~~~l~~~~~~~  147 (153)
T 3ees_A           96 -------------GILILFYEILYWKGE------PRAKHHMMLEWIHPEELKHRNIP---EANRKILHKIYKAL  147 (153)
T ss_dssp             -------------EEEEEEEEECEEESC------CCCSSSSEEEEECGGGGGGSCCC---HHHHTTHHHHHHHT
T ss_pred             -------------eEEEEEEEEEECCCC------cCCCccceEEEecHHHhhhCCCC---cchHHHHHHHHHhh
Confidence                         122333333322212      12257889999999999987543   55566666555544

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.83  E-value=1.2e-19  Score=127.88  Aligned_cols=124  Identities=18%  Similarity=0.270  Sum_probs=80.4

Q ss_pred             ccceeEEEEEecCCcEEEEEecC----CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~l-PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (173)
                      .+.++++++++.++++||++|..    .+|.|.+ |||++++||++.+||+||++||||+.+..+... .. ..+.... 
T Consensus        36 ~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l-~~-~~~~~~~-  112 (180)
T 2fkb_A           36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEH-GQ-FYFEDKN-  112 (180)
T ss_dssp             CEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEE-EE-EEEEETT-
T ss_pred             eeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEE-EE-EEecCCC-
Confidence            56677778888889999999874    3678999 999999999999999999999999985332221 11 1111110 


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHH
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF  155 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l  155 (173)
                                   .....++|.+..   .....    .+.+|+.++.|++++++.+++.+.. +....++..+
T Consensus       113 -------------~~~~~~~f~~~~---~~~~~----~~~~E~~~~~W~~~~el~~~~~~~~-~~~~~~l~~~  164 (180)
T 2fkb_A          113 -------------CRVWGALFSCVS---HGPFA----LQEDEVSEVCWLTPEEITARCDEFT-PDSLKALALW  164 (180)
T ss_dssp             -------------EEEEEEEEEEEC---CCCCC----CCTTTEEEEEEECHHHHHTTGGGBC-HHHHHHHHHH
T ss_pred             -------------ceEEEEEEEEec---CCCcC----CChhHhheEEEecHHHHHHHHHHhC-CcHHHHHHHH
Confidence                         011223444442   12222    2336889999999999999854222 3334444333

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.83  E-value=8.1e-20  Score=125.42  Aligned_cols=120  Identities=23%  Similarity=0.385  Sum_probs=75.1

Q ss_pred             EEEecCCcEEEEEecC-CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCC
Q 030711           15 CLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG   93 (173)
Q Consensus        15 ~i~~~~~~vLl~~r~~-~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (173)
                      ++++.++++||++|.. .++.|.+|||++++|||+.+||+||++||||+.+... ..+.. ..+.++...          
T Consensus        10 ~ii~~~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~~~-~~~~~~~~~----------   77 (153)
T 3shd_A           10 CVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ-HFIRM-HQWIAPDKT----------   77 (153)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCC-EEEEE-EEECCTTSC----------
T ss_pred             EEEEeCCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccC-cEEEE-EEEecCCCc----------
Confidence            4556689999999863 3468999999999999999999999999999995332 11111 122222211          


Q ss_pred             ccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHH
Q 030711           94 EWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF  155 (173)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l  155 (173)
                         .....+|.+...... ...    .+.+|+.+++|++++++..... ...+.+...+..+
T Consensus        78 ---~~~~~~f~~~~~~~~-~~~----~~~~E~~~~~W~~~~el~~~~~-~~~~~~~~~l~~~  130 (153)
T 3shd_A           78 ---PFLRFLFAIELEQIC-PTQ----PHDSDIDCCRWVSAEEILQASN-LRSPLVAESIRCY  130 (153)
T ss_dssp             ---CEEEEEEEEECSSCC-CCC----CCSTTCCEEEEECHHHHHTCSC-BSSTHHHHHHHHH
T ss_pred             ---eEEEEEEEEEccccC-cCC----CCcccceeeEEecHHHhhcccc-ccCchHHHHHHHH
Confidence               112345555554332 111    2336889999999999932221 1224555554443

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.83  E-value=2.9e-20  Score=130.00  Aligned_cols=129  Identities=16%  Similarity=0.252  Sum_probs=83.5

Q ss_pred             cceeEEEEEecCCcEEEEEecC----CCCeEE-CCCcccCCCCCHHHHHHHHHHHHhCCchhhh-hhccCCcccccCCcc
Q 030711            9 RPNVGVCLINSDSQIFVASRLN----VPGAWQ-MPQGGIEDGEDPKLAAMRELREETGIVSAEI-IAEVPNWLTYDFPPA   82 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~----~~~~w~-lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~~   82 (173)
                      +.++++++++.++++||++|..    ++|.|. +|||++++|||+.+||+||++||||+.+... +..+..+..+.++..
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~  113 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS  113 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence            6677888888999999999864    368998 9999999999999999999999999985332 111111110111110


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhh
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN  160 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~  160 (173)
                                     ...++|.+..   ......    +++|+.+++|++++++.++..+.. .....++..+..++.
T Consensus       114 ---------------~~~~~f~~~~---~~~~~~----~~~E~~~~~W~~~~el~~~~~~~~-~~~~~~~~~l~~~~~  168 (171)
T 1q27_A          114 ---------------SFMCVYELRS---DATPIF----NPNDISGGEWLTPEHLLARIAAGE-AAKGDLAELVRRCYR  168 (171)
T ss_dssp             ---------------SEEEEEEEEC---CCCCCS----CTTTCSCCEEECHHHHHHHHHHHS-SCCHHHHHHHHHHHT
T ss_pred             ---------------cEEEEEEEEE---CCcccc----CchhhheEEEecHHHHHHHHhcCC-CCchhHHHHHHHHHh
Confidence                           1234555544   122222    236888999999999997755432 233344444444443

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.83  E-value=9e-20  Score=125.94  Aligned_cols=118  Identities=16%  Similarity=0.254  Sum_probs=75.3

Q ss_pred             cceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh-hhhhccCCcccccCCccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA-EIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +.+|++++++.++++||++|...  +|.|.+|||++++||++.+||+||++||||+.+. .....+.. ..+.++.... 
T Consensus        18 ~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~-~~~~~~~~~~-   95 (160)
T 1rya_A           18 LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGV-WQHFYDDNFS-   95 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEE-EEEEESSBTT-
T ss_pred             EEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEE-EeEEEccccc-
Confidence            45777788888899999998863  5799999999999999999999999999999842 11111111 1122221100 


Q ss_pred             ccccccCCc-cccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhh
Q 030711           86 KVNRLWGGE-WHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQA  140 (173)
Q Consensus        86 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~  140 (173)
                            +.. .......+|.+....  .....    +.+|+.+++|++++++.++.
T Consensus        96 ------~~~~~~~~~~~~f~~~~~~--~~~~~----~~~e~~~~~W~~~~el~~~~  139 (160)
T 1rya_A           96 ------GTDFTTHYVVLGFRFRVSE--EELLL----PDEQHDDYRWLTSDALLASD  139 (160)
T ss_dssp             ------BSSSCEEEEEEEEEEECCG--GGCCC----CSSSEEEEEEECHHHHHHCT
T ss_pred             ------CCCcCcEEEEEEEEEEcCc--ccccc----CCCccceEEEecHHHHhhcc
Confidence                  000 001123344444332  22221    23588999999999999853

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.82  E-value=5.3e-20  Score=124.48  Aligned_cols=113  Identities=23%  Similarity=0.187  Sum_probs=74.7

Q ss_pred             ccceeEEEEEe--cCCc--EEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccc
Q 030711            8 YRPNVGVCLIN--SDSQ--IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAV   83 (173)
Q Consensus         8 ~~~~v~~~i~~--~~~~--vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   83 (173)
                      .+.+++++|++  .+++  +||++|...++.|.+|||++++|||+.+||+||++||||+.+... ..+.   .+.++...
T Consensus         8 p~~~v~~vi~~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~---~~~~~~~~   83 (139)
T 2yyh_A            8 PLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLH-KLMG---VYSDPERD   83 (139)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEE-EEEE---EECCTTSC
T ss_pred             CeEEEEEEEEEEcCCCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccc-eEEE---EECCCCcC
Confidence            45566666665  6777  999999876666999999999999999999999999999985321 1111   12211110


Q ss_pred             ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHH--Hhhhh
Q 030711           84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV--EQAVD  142 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~--~~~~~  142 (173)
                                ........+|.+....   ...     ..+|+.+++|++++++.  ++..+
T Consensus        84 ----------~~~~~~~~~f~~~~~~---~~~-----~~~e~~~~~W~~~~el~~~~l~~~  126 (139)
T 2yyh_A           84 ----------PRAHVVSVVWIGDAQG---EPK-----AGSDAKKVKVYRLEEIPLDKLVFD  126 (139)
T ss_dssp             ----------TTSCEEEEEEEEEEES---CCC-----CCTTEEEEEEECTTSCCGGGBCTT
T ss_pred             ----------CCceEEEEEEEEecCC---ccC-----CCCCcceEEEEEHHHCCHhhcCCC
Confidence                      0001123456555522   111     22588899999999999  65543

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.82  E-value=1.6e-20  Score=134.19  Aligned_cols=127  Identities=20%  Similarity=0.330  Sum_probs=79.7

Q ss_pred             ccceeEEEEE--ecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            8 YRPNVGVCLI--NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         8 ~~~~v~~~i~--~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      ++..++++++  +.+++|||++|.+.+|.|.+|||++++||++.+||+||++||||+.+... ..+..   +.+...   
T Consensus        39 ~~~~~~~vi~~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~-~~l~~---~~~~~~---  111 (194)
T 2fvv_A           39 YKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLVGI---FENQER---  111 (194)
T ss_dssp             CEEEEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEE-EEEEE---EEETTT---
T ss_pred             ccccEEEEEEEECCCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccc-eEEEE---EEcCCC---
Confidence            5666666666  34689999998877789999999999999999999999999999985322 11111   111110   


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~  157 (173)
                                 .....+|.+.+.........    ...+..+++|++++++.+++.... ......+..+..
T Consensus       112 -----------~~~~~~f~~~~~~~~~~~~~----~~e~~~~~~W~~~~el~~~l~~~~-~~~~~~l~~l~~  167 (194)
T 2fvv_A          112 -----------KHRTYVYVLIVTEVLEDWED----SVNIGRKREWFKIEDAIKVLQYHK-PVQASYFETLRQ  167 (194)
T ss_dssp             -----------TEEEEEEEEEEEEECSSCHH----HHHHCCCEEEEEHHHHHHHHTTTC-HHHHHHTCC---
T ss_pred             -----------ceEEEEEEEEEccccCCCCC----cccccceEEEEEHHHHHHHHhcCc-HHHHHHHHHHhh
Confidence                       01234555544321111100    001346899999999999865433 556666555443

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.82  E-value=3.2e-20  Score=131.78  Aligned_cols=135  Identities=19%  Similarity=0.213  Sum_probs=80.7

Q ss_pred             ccceeEEEEEe--c-----CCcEEEEEec---------CCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhcc
Q 030711            8 YRPNVGVCLIN--S-----DSQIFVASRL---------NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV   71 (173)
Q Consensus         8 ~~~~v~~~i~~--~-----~~~vLl~~r~---------~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~   71 (173)
                      .+.+|.++|+.  .     +++|||++|.         ..+|.|.+|||++++|||+.+||+||++||||+.+..+.. +
T Consensus        26 ~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l  104 (187)
T 3i9x_A           26 DGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIP-F  104 (187)
T ss_dssp             SEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEE-E
T ss_pred             ccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-E
Confidence            34556655553  2     3589999993         3568999999999999999999999999999998533221 1


Q ss_pred             CCcccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh-cCchHHHH
Q 030711           72 PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD-YKRPTYEE  150 (173)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~-~~~~~~~~  150 (173)
                      .   .+..+....          .......+|.+.+.........    ..+|+.+++|++++++.++... ....++..
T Consensus       105 ~---~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~~E~~~~~W~~~~el~~~~l~~~~~~il~~  167 (187)
T 3i9x_A          105 G---VFDKPGRDP----------RGWIISRAFYAIVPPEALEKRA----AGDDAAEIGLFPMTEALELPLAFDHLDMLKK  167 (187)
T ss_dssp             E---EECCTTSST----------TSSEEEEEEEEECCHHHHHHHH----HSTTTTTEEEEEHHHHTTSCBSTTHHHHHHH
T ss_pred             E---EEcCCccCC----------CCCEEEEEEEEEEcCcccCCcC----CCCceeEEEEEeHHHcccCCCCccHHHHHHH
Confidence            1   111111100          0011234455544432211111    1257889999999999975332 22245555


Q ss_pred             HHHHHhhhhh
Q 030711          151 VMRTFRPYLN  160 (173)
Q Consensus       151 ~~~~l~~~~~  160 (173)
                      +++.++....
T Consensus       168 a~~~l~~~~~  177 (187)
T 3i9x_A          168 AFSAITEEFL  177 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            5555554443

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.82  E-value=9.5e-20  Score=124.95  Aligned_cols=121  Identities=17%  Similarity=0.172  Sum_probs=76.5

Q ss_pred             EEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccC
Q 030711           15 CLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG   92 (173)
Q Consensus        15 ~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (173)
                      ++++.++++||++|...  ++.|.+|||++++||++.+||+||++||||+.+... ..+.. ..+.++....        
T Consensus        13 ~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~-~~~~~~~~~~--------   82 (153)
T 2b0v_A           13 AVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE-VLTGI-YHWTCASNGT--------   82 (153)
T ss_dssp             EECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEE-EEEEE-EEEEETTTTE--------
T ss_pred             EEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccc-eEEEE-EEEeCCCCCc--------
Confidence            44567799999998863  468999999999999999999999999999985322 11111 1122221000        


Q ss_pred             CccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHH
Q 030711           93 GEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRT  154 (173)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~  154 (173)
                          .....+|.+....... ..    ...+|+.++.|++++++.++......+.+..++..
T Consensus        83 ----~~~~~~f~~~~~~~~~-~~----~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~  135 (153)
T 2b0v_A           83 ----TYLRFTFSGQVVSFDP-DR----KLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIED  135 (153)
T ss_dssp             ----EEEEEEEEEEEEEECT-TS----CCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHH
T ss_pred             ----EEEEEEEEEEeCCCCC-CC----CCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHH
Confidence                0112344444432211 01    12358889999999999997433334555555543

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.82  E-value=5.2e-20  Score=125.54  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=78.5

Q ss_pred             ccceeEEEEEec-CCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711            8 YRPNVGVCLINS-DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (173)
Q Consensus         8 ~~~~v~~~i~~~-~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (173)
                      .+.+++++|++. ++++||++|.  +|.|.+|||++++||++.+||+||+.||||+.+... ..+.....+.++...   
T Consensus        17 ~~~~~~~vi~~~~~~~vLl~~r~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~~---   90 (148)
T 2azw_A           17 TRYAAYIIVSKPENNTMVLVQAP--NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIG-CYLGEADEYFYSNHR---   90 (148)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT--TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEEEEEEEETTT---
T ss_pred             eeeEEEEEEECCCCCeEEEEEcC--CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEee-eEEEEEEEEEcCCCC---
Confidence            455677777776 6899999974  489999999999999999999999999999985322 111111111111110   


Q ss_pred             cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHH
Q 030711           87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF  155 (173)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l  155 (173)
                            ........++|.+.....  ...     ..+|+.++.|++++++.+++..   ...+.+++.+
T Consensus        91 ------~~~~~~~~~~~~~~~~~~--~~~-----~~~e~~~~~W~~~~el~~~~~~---~~~~~~l~~~  143 (148)
T 2azw_A           91 ------QTAYYNPGYFYVANTWRQ--LSE-----PLERTNTLHWVAPEEAVRLLKR---GSHRWAVEKW  143 (148)
T ss_dssp             ------TEEEEEEEEEEEEEEEEE--CSS-----CC-CCSEEEEECHHHHHHHBSC---HHHHHHHHHH
T ss_pred             ------CcceEEEEEEEEEEcCcC--CcC-----CCCceeeEEEeeHHHHHhhhcc---hhHHHHHHHH
Confidence                  000011234444444321  111     1246789999999999998653   4555555443

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.82  E-value=4.9e-20  Score=127.13  Aligned_cols=54  Identities=30%  Similarity=0.475  Sum_probs=47.4

Q ss_pred             ceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~   65 (173)
                      .+++++|++ ++++||++|.. +|.|.+|||++++|||+.+||+||+.||||+.+.
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~~-~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   55 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE   55 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEE
T ss_pred             eEEEEEEEE-CCEEEEEEEcC-CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcce
Confidence            356666776 89999999876 6899999999999999999999999999999853

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.82  E-value=9.4e-20  Score=130.54  Aligned_cols=112  Identities=19%  Similarity=0.170  Sum_probs=73.9

Q ss_pred             eeEEEEEecCCcEEEEEecCC---CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~---~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      +|++++++++ ++||+++.+.   ++.|++|||++++||++.+||+||+.||||+.+..+...... .  ..+.      
T Consensus        51 av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~-~--~~~~------  120 (198)
T 1vhz_A           51 AVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKL-S--MAPS------  120 (198)
T ss_dssp             EEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE-E--CCTT------
T ss_pred             EEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEE-e--CCCC------
Confidence            5555567766 9999987653   358999999999999999999999999999985432221111 1  0111      


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                             ......++|++...... ...    .+++|...+.|++++++.+++....
T Consensus       121 -------~~~~~~~~f~a~~~~~~-~~~----~~~~E~~~~~w~~~~el~~~~~~~~  165 (198)
T 1vhz_A          121 -------YFSSKMNIVVAQDLYPE-SLE----GDEPEPLPQVRWPLAHMMDLLEDPD  165 (198)
T ss_dssp             -------TCCCEEEEEEEEEEEEC-CCC----CCCSSCCCEEEEEGGGGGGGGGCTT
T ss_pred             -------ccCcEEEEEEEEeCCcc-cCC----CCCCceEEEEEEEHHHHHHHHHcCC
Confidence                   11112345555543221 111    2346888999999999999887653

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.82  E-value=4.5e-20  Score=129.02  Aligned_cols=117  Identities=23%  Similarity=0.318  Sum_probs=72.8

Q ss_pred             ccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      ++..|++++++ ++++||++|...+|.|.+|||++++||++.+||+||++||||+.+. ....+.   .+.++....   
T Consensus        22 ~~~~v~~ii~~-~~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~---~~~~~~~~~---   93 (171)
T 3id9_A           22 MQVRVTGILIE-DEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVK-IKKLLY---VCDKPDASP---   93 (171)
T ss_dssp             CEEEEEEEEEE-TTEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEE-EEEEEE---EEEETTSSS---
T ss_pred             eEEEEEEEEEE-CCEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccc-cceEEE---EEcccCCCC---
Confidence            55566666665 6899999988767899999999999999999999999999999952 211111   111111100   


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                               .....+|.+.......... ....+.+|+.++.|++++++.++...
T Consensus        94 ---------~~~~~~~~~~~~~~~~~~~-~~~~~~~E~~~~~w~~~~el~~~~~~  138 (171)
T 3id9_A           94 ---------SLLHITFLLERIEGEITLP-SNEFDHNPIHDVQMVPINELSYYGFS  138 (171)
T ss_dssp             ---------CEEEEEEEEEEC--------------CCCCCEEEEETGGGGGGTCC
T ss_pred             ---------cEEEEEEEEEEcCCcccCC-ccCCCcCeeeeEEEEeHHHHhhCCCC
Confidence                     0112344444433221111 11124468899999999999998543

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.81  E-value=1.7e-20  Score=137.02  Aligned_cols=132  Identities=13%  Similarity=0.134  Sum_probs=85.4

Q ss_pred             ccceeEEEEE---ecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711            8 YRPNVGVCLI---NSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (173)
Q Consensus         8 ~~~~v~~~i~---~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (173)
                      .+.+|+++|+   +.+++|||++|...  +|.|.+|||++++|||+.+||+||+.||||+.+..+.. +.   .+..+..
T Consensus        12 p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~-l~---~~~~~~r   87 (226)
T 2fb1_A           12 FYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQ-VG---AFGAIDR   87 (226)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEE-EE---EECCTTS
T ss_pred             CeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEE-EE---EeCCCCc
Confidence            3456666766   44679999999863  47899999999999999999999999999998542211 11   1211111


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhh
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN  160 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~  160 (173)
                      ..          .......+|.+.+.....  ..    +.+|+.++.|++++++.++..++. .++...++.++..+.
T Consensus        88 ~~----------~~~~v~~~y~a~~~~~~~--~~----~~~e~~~~~W~~~~el~~l~~dh~-~il~~a~~rlr~~~~  148 (226)
T 2fb1_A           88 DP----------GERVVSIAYYALININEY--DR----ELVQKHNAYWVNINELPALIFDHP-EMVDKAREMMKQKAS  148 (226)
T ss_dssp             SS----------SSCEEEEEEEEECCTTSS--CH----HHHHHTTEEEEETTSCCCBSTTHH-HHHHHHHHHHHHHHH
T ss_pred             CC----------CceEEEEEEEEEecCccc--cc----CCccccceEEEEHHHhhhccCCHH-HHHHHHHHHHHhhcc
Confidence            00          001123455555543221  11    125788999999999998776542 566666666665443

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.81  E-value=1.4e-19  Score=126.60  Aligned_cols=113  Identities=27%  Similarity=0.452  Sum_probs=73.0

Q ss_pred             cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +.+|++++++ ++++||+++.+   .++.|.+|||++++|||+.+||+||+.||||+ +..+... ..+  +..+.    
T Consensus        34 ~~~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l-~~~--~~~~~----  104 (170)
T 1v8y_A           34 KPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYL-FSY--FVSPG----  104 (170)
T ss_dssp             CCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEE-EEE--ESCTT----
T ss_pred             CCeEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceee-EEE--ecCCC----
Confidence            4477777888 89999998765   34789999999999999999999999999999 5433221 111  11111    


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                               ......++|.+..... ....    .+++|+.++.|++++++.+++....
T Consensus       105 ---------~~~~~~~~f~~~~~~~-~~~~----~~~~E~~~~~W~~~~el~~~~~~~~  149 (170)
T 1v8y_A          105 ---------FTDEKTHVFLAENLKE-VEAH----PDEDEAIEVVWMRPEEALERHQRGE  149 (170)
T ss_dssp             ---------TBCCEEEEEEEEEEEE-CC------------CEEEEECHHHHHHHHHTTS
T ss_pred             ---------ccccEEEEEEEEeccc-cCCC----CCCCceEEEEEEEHHHHHHHHHCCC
Confidence                     0111234555554321 1111    2336889999999999999877654

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.81  E-value=2.9e-19  Score=120.71  Aligned_cols=120  Identities=24%  Similarity=0.359  Sum_probs=76.3

Q ss_pred             ceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711           10 PNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (173)
                      ..++++|++.++++||++|..   .+|.|.+|||++++||++.+||+||+.||||+.+... ..+.. ..+.++..    
T Consensus         9 ~~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~-~~~~~-~~~~~~~~----   82 (140)
T 2rrk_A            9 IEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVG-EYVAS-HQREVSGR----   82 (140)
T ss_dssp             EEEEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECC-EEEEE-EEEEETTE----
T ss_pred             ceEEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecc-cEEEE-EEEecCCc----
Confidence            445555667889999999865   3589999999999999999999999999999985322 11111 11222211    


Q ss_pred             cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHh
Q 030711           87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFR  156 (173)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~  156 (173)
                                ....++|.+....  ...      ...|+.++.|++++++.++..+   +....+++.+.
T Consensus        83 ----------~~~~~~~~~~~~~--~~~------~~~e~~~~~W~~~~el~~~~~~---~~~~~~l~~~~  131 (140)
T 2rrk_A           83 ----------IIHLHAWHVPDFH--GTL------QAHEHQALVWCSPEEALQYPLA---PADIPLLEAFM  131 (140)
T ss_dssp             ----------EEEEEEEEESEEE--ECC------CCSSCSCEEEECHHHHTTSCCC---TTHHHHHHHHH
T ss_pred             ----------EEEEEEEEEEeeC--CCc------CCCccceeEEeCHHHHhhCCCC---hhHHHHHHHHH
Confidence                      0012333333221  111      1247788999999999997653   33444544443

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.81  E-value=1.9e-19  Score=129.97  Aligned_cols=119  Identities=15%  Similarity=0.122  Sum_probs=76.7

Q ss_pred             ceeEEEEEe-cCCcEEEEEecCC--------CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711           10 PNVGVCLIN-SDSQIFVASRLNV--------PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (173)
Q Consensus        10 ~~v~~~i~~-~~~~vLl~~r~~~--------~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (173)
                      .+|++++++ .++++||+++.+.        ++.|++|||++++||++.+||+||+.||||+.+..+......   +..+
T Consensus        58 ~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~---~~~~  134 (209)
T 1g0s_A           58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSF---LASP  134 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEE---ESCT
T ss_pred             CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEE---ecCC
Confidence            466777777 4689999887653        357999999999999999999999999999986433222111   1112


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCc
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKR  145 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~  145 (173)
                      .             ......++|++.......... ....+++|...+.|++++++.+++.....
T Consensus       135 g-------------~~~~~~~~f~a~~~~~~~~~~-~~~~~e~E~~~~~w~~~~el~~~i~~g~i  185 (209)
T 1g0s_A          135 G-------------GTSERSSIMVGEVDATTASGI-HGLADENEDIRVHVVSREQAYQWVEEGKI  185 (209)
T ss_dssp             T-------------TBCCEEEEEEEECCGGGCC---------CCSCEEEEEEHHHHHHHHHTTSS
T ss_pred             C-------------ccCcEEEEEEEEEccccccCC-CCCCCCCcEEEEEEEEHHHHHHHHHcCCC
Confidence            1             111234566665432211100 00124467889999999999999876543

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.81  E-value=1e-19  Score=128.02  Aligned_cols=112  Identities=14%  Similarity=0.237  Sum_probs=73.5

Q ss_pred             ccceeEEEEEecCCcEEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      .+..+++++++.++++||++|.+  .+|.|.+|||++++||++.+||+||++||||+.+..+.. +.. ..+.++...  
T Consensus        23 ~~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~-~~~~~~~~~--   98 (176)
T 3q93_A           23 ASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHK-VGQ-IVFEFVGEP--   98 (176)
T ss_dssp             CEEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEE-EEE-EEEEETTCS--
T ss_pred             CCcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEE-EEE-EEEEcCCCC--
Confidence            44556667778889999999876  358999999999999999999999999999999532221 111 112221110  


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                                  .....++|.+........      ..|...++|++++++.++..
T Consensus        99 ------------~~~~~~~f~~~~~~~~~~------~~e~~~~~W~~~~el~~~~~  136 (176)
T 3q93_A           99 ------------ELMDVHVFCTDSIQGTPV------ESDEMRPCWFQLDQIPFKDM  136 (176)
T ss_dssp             ------------CEEEEEEEEESCEESCCC------CCSSEEEEEEETTCCCGGGB
T ss_pred             ------------cEEEEEEEEEECCCCCcC------CCcceeeEEeeHHHcccccc
Confidence                        012334444432222211      24567789999999998754

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.81  E-value=2.7e-19  Score=127.49  Aligned_cols=119  Identities=15%  Similarity=0.175  Sum_probs=76.5

Q ss_pred             cceeEEEEEec-CCcEEEEEecC---------CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCccccc
Q 030711            9 RPNVGVCLINS-DSQIFVASRLN---------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYD   78 (173)
Q Consensus         9 ~~~v~~~i~~~-~~~vLl~~r~~---------~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   78 (173)
                      +.+|++++++. ++++||+++.+         .++.|++|||+++ ||++.+||+||+.||||+.+..+......   +.
T Consensus        45 ~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~---~~  120 (191)
T 3o6z_A           45 GNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL---YM  120 (191)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEE---ES
T ss_pred             CCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEE---Ee
Confidence            34677777775 58999998875         4568999999999 99999999999999999996433222111   11


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCch
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRP  146 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~  146 (173)
                      .+.             ......++|++...... ........ ++|+.++.|++++++.+++......
T Consensus       121 ~~~-------------~~~~~~~~f~~~~~~~~-~~~~~~~~-~~E~~~~~w~~~~el~~~~~~g~i~  173 (191)
T 3o6z_A          121 SPG-------------GVTELIHFFIAEYSDNQ-RANAGGGV-EDEAIEVLELPFSQALEMIKTGEIR  173 (191)
T ss_dssp             CTT-------------TBCCEEEEEEEECCTTC-C---------CCSSEEEEEEHHHHHHHHHHSSCC
T ss_pred             CCC-------------ccCcEEEEEEEEEcccc-cccCCCCC-CCcEEEEEEEEHHHHHHHHHcCCCC
Confidence            111             11223456666654321 11100111 3688999999999999998765443

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.80  E-value=1.6e-19  Score=130.94  Aligned_cols=122  Identities=18%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             ccceeEEEEEec-CCcEEEEEecC---C-------------------------------CCeEECCCcccCC-CCCHHHH
Q 030711            8 YRPNVGVCLINS-DSQIFVASRLN---V-------------------------------PGAWQMPQGGIED-GEDPKLA   51 (173)
Q Consensus         8 ~~~~v~~~i~~~-~~~vLl~~r~~---~-------------------------------~~~w~lPgG~ie~-gE~~~~a   51 (173)
                      .+.+|++++++. ++++||+++.+   +                               ++.|++|||++++ |||+.+|
T Consensus        35 ~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~ea  114 (218)
T 3q91_A           35 THDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEV  114 (218)
T ss_dssp             CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHH
T ss_pred             cCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHH
Confidence            356788888884 58899998765   2                               4689999999999 9999999


Q ss_pred             HHHHHHHHhCCch--hhhhhccCCcccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceee
Q 030711           52 AMRELREETGIVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWK  129 (173)
Q Consensus        52 a~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~  129 (173)
                      |+||+.||||+.+  ..+..........                .+.....++|++...............+++|+.++.
T Consensus       115 A~REl~EEtGl~~~~~~l~~l~~~~~~~----------------g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~  178 (218)
T 3q91_A          115 ACKEAWEECGYHLAPSDLRRVATYWSGV----------------GLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVV  178 (218)
T ss_dssp             HHHHHHHHHCBCCCGGGCEEEEEEEEC-------------------CCEEEEEEEEEECGGGBCC---------CCEEEE
T ss_pred             HHHHHHHHhCCccccCceEEEEEEecCC----------------CccceEEEEEEEEECCcccccCCCCCCCCCcEEEEE
Confidence            9999999999985  3332222111111                111223456666655321100001123457899999


Q ss_pred             EeCHHHHHHhhhhcCc
Q 030711          130 WASPEEVVEQAVDYKR  145 (173)
Q Consensus       130 W~~~~e~~~~~~~~~~  145 (173)
                      |++++++.+++.....
T Consensus       179 wv~l~el~~~i~~g~i  194 (218)
T 3q91_A          179 HLPLEGAQAFADDPDI  194 (218)
T ss_dssp             EEEGGGHHHHHHCTTS
T ss_pred             EEEHHHHHHHHHcCCC
Confidence            9999999999876543

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.80  E-value=2.7e-20  Score=128.00  Aligned_cols=124  Identities=14%  Similarity=0.211  Sum_probs=77.0

Q ss_pred             ccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      ++.+++++|++ ++++||++|   +|.|.+|||++++||++.+||+||++||||+.+..... +.. ..+.++...    
T Consensus        18 ~~~~~~~ii~~-~~~vLl~~r---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~-~~~~~~~~~----   87 (154)
T 2pqv_A           18 FGVRATALIVQ-NHKLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQL-AFV-VENRFEVDG----   87 (154)
T ss_dssp             EEEEEEECCEE-TTEEEEEEE---TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEE-EEE-EEEEEEETT----
T ss_pred             EeEEEEEEEEE-CCEEEEEec---CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceE-EEE-EeeeecCCC----
Confidence            56666666665 689999998   68999999999999999999999999999998532111 111 111111100    


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHH
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMR  153 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~  153 (173)
                            ........+|.+........ ..   .+.+|+.++.|++++++.++...  ......++.
T Consensus        88 ------~~~~~~~~~f~~~~~~~~~~-~~---~~~~e~~~~~W~~~~el~~~~~~--~~~~~~~l~  141 (154)
T 2pqv_A           88 ------VSYHNIEFHYLVDLLEDAPL-TM---QEDEKRQPCEWIDLDKLQNIQLV--PVFLKTALP  141 (154)
T ss_dssp             ------EEEEEEEEEEEEEESSCCCS-EE---EETTEEEEEEEEEGGGGGGSCEE--STTHHHHTT
T ss_pred             ------CcceEEEEEEEEEecCCCCc-cc---CCCCceeeEEEeEHHHHhhcCcC--cHHHHHHhh
Confidence                  00011234555555432211 11   12247889999999999986443  244444443

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.80  E-value=6.6e-20  Score=132.01  Aligned_cols=112  Identities=15%  Similarity=0.257  Sum_probs=72.4

Q ss_pred             cceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcc--cccCCcccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWL--TYDFPPAVKTK   86 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~--~~~~~~~~~~~   86 (173)
                      +.+|.++|++ +++|||++|.. +|.|.+|||++++|||+.+||+||++||||+.+... ..+....  .+.++....  
T Consensus        68 ~~~v~~vv~~-~~~vLLv~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~-~~l~~~~~~~~~~~~~~~--  142 (205)
T 3q1p_A           68 KVDIRAVVFQ-NEKLLFVKEKS-DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHF-KLLAIFDKEKHQPSPSAT--  142 (205)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEEEHHHHSCCCCSS--
T ss_pred             cceEEEEEEE-CCEEEEEEEcC-CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccc-eEEEEEeccccCCCCCCc--
Confidence            3456667776 78999999874 689999999999999999999999999999985321 1111111  111111111  


Q ss_pred             cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                                .....+|.+.....  .+..     .+|+.++.|+++++++++...
T Consensus       143 ----------~~~~~~~~~~~~~~--~~~~-----~~E~~~~~w~~~~el~~l~~~  181 (205)
T 3q1p_A          143 ----------HVYKIFIGCEIIGG--EKKT-----SIETEEVEFFGENELPNLSIA  181 (205)
T ss_dssp             ----------CEEEEEEEEEEEEE--CCCC-----CTTSCCEEEECTTSCCCBCTT
T ss_pred             ----------eEEEEEEEEEecCC--ccCC-----CCcceEEEEEeHHHhhhcCCC
Confidence                      11234555555432  2211     158899999999999987654

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.80  E-value=1.6e-19  Score=135.01  Aligned_cols=112  Identities=18%  Similarity=0.327  Sum_probs=71.5

Q ss_pred             eeEEEEEec-CCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           11 NVGVCLINS-DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        11 ~v~~~i~~~-~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      .+++++++. +++|||++|.+.++.|.+|||++++|||+.+||+||++||||+.+..+... .     .|...       
T Consensus       103 ~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~-~-----~~~~~-------  169 (271)
T 2a6t_A          103 VRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINP-N-----EFIDM-------  169 (271)
T ss_dssp             EEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCT-T-----CEEEE-------
T ss_pred             eEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeee-e-----eeccC-------
Confidence            455566665 489999999877789999999999999999999999999999996442211 1     11110       


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                          ...+...++|++...........   .+.+|+..++|++++++.++...
T Consensus       170 ----~~~~~~~~~f~~~~~~~~~~~~~---~~~~E~~~~~W~~~~el~~~~~~  215 (271)
T 2a6t_A          170 ----TIRGQNVRLYIIPGISLDTRFES---RTRKEISKIEWHNLMDLPTFKKN  215 (271)
T ss_dssp             ----EETTEEEEEEEECCCCTTCCCC---------EEEEEEEEGGGSTTCC--
T ss_pred             ----CcCCceEEEEEEEEecCcccCCC---CCccceeEEEEEEHHHHHHHHhc
Confidence                00111234555544322211121   13368999999999999987543

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.80  E-value=1.4e-19  Score=133.31  Aligned_cols=132  Identities=18%  Similarity=0.248  Sum_probs=83.6

Q ss_pred             ceeEEEEE---ecCCcEEEEEecCC--CCeEECCCcccCC--CCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711           10 PNVGVCLI---NSDSQIFVASRLNV--PGAWQMPQGGIED--GEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (173)
Q Consensus        10 ~~v~~~i~---~~~~~vLl~~r~~~--~~~w~lPgG~ie~--gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (173)
                      .+|.++|+   +.+++|||++|...  +|.|.+|||++++  |||+.+||+||++||||+.+..+. .+.   .+..+..
T Consensus        23 v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~-~l~---~~~~~~r   98 (240)
T 3gz5_A           23 LTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIE-QLC---TVGNNSR   98 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEE-EEE---EEEESSS
T ss_pred             cEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCcee-eEE---EeCCCcc
Confidence            45656665   33468999998863  4789999999999  999999999999999999853322 211   1111111


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHH--hhhhcCchHHHHHHHHHhhhhh
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVE--QAVDYKRPTYEEVMRTFRPYLN  160 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~--~~~~~~~~~~~~~~~~l~~~~~  160 (173)
                      ..          ......++|.+.+........      .+|+.++.|++++++.+  +..++ ..++...++.++..+.
T Consensus        99 ~~----------~~~~~~~~y~a~~~~~~~~~~------~~e~~~~~W~~~~el~~~~l~~dh-~~il~~a~~rlr~kl~  161 (240)
T 3gz5_A           99 DA----------RGWSVTVCYTALMSYQACQIQ------IASVSDVKWWPLADVLQMPLAFDH-LQLIEQARERLTQKAL  161 (240)
T ss_dssp             ST----------TSCEEEEEEEEECCHHHHHHH------HTTCTTEEEEEHHHHTTSCCSTTH-HHHHHHHHHHHHHHHH
T ss_pred             CC----------CceEEEEEEEEEecccccCCC------CCcccceEEecHHHcccCCcchhH-HHHHHHHHHHHHHhcc
Confidence            00          001123555555543321111      14788999999999985  33433 2567777777766554


Q ss_pred             hc
Q 030711          161 EN  162 (173)
Q Consensus       161 ~~  162 (173)
                      -.
T Consensus       162 y~  163 (240)
T 3gz5_A          162 YS  163 (240)
T ss_dssp             HC
T ss_pred             cC
Confidence            43

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.79  E-value=4.8e-19  Score=127.68  Aligned_cols=116  Identities=18%  Similarity=0.318  Sum_probs=74.0

Q ss_pred             ceeEEEEEecCCcEEEEEecCC---CCeEECCCcccC-CCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711           10 PNVGVCLINSDSQIFVASRLNV---PGAWQMPQGGIE-DGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~---~~~w~lPgG~ie-~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      .+|++++++.++++||+++.+.   ++.|.||||+++ +||++.+||+||+.||||+.+..+.. +..+  +.++...  
T Consensus        44 ~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~--~~~~~~~--  118 (207)
T 1mk1_A           44 GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQV-LVDL--DTAPGFS--  118 (207)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEE-EEEE--CSCTTTB--
T ss_pred             CEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEE-EEEE--EcCCCcc--
Confidence            4666777888899999988753   368999999999 99999999999999999998543221 1111  2222111  


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                                 ....++|++..........   ..++.|+..+.|++++++.+++....
T Consensus       119 -----------~~~~~~f~~~~~~~~~~~~---~~~~~E~~~~~Wv~~~el~~~~~~~~  163 (207)
T 1mk1_A          119 -----------DESVRVYLATGLREVGRPE---AHHEEADMTMGWYPIAEAARRVLRGE  163 (207)
T ss_dssp             -----------CCCEEEEEEEEEEECCC-------------CEEEEEHHHHHHHHHTTS
T ss_pred             -----------ccEEEEEEEEccccCCCCC---CCCCCceEEEEEEEHHHHHHHHHcCC
Confidence                       1123556555433211111   12346889999999999999987653

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.79  E-value=2e-19  Score=134.17  Aligned_cols=120  Identities=19%  Similarity=0.267  Sum_probs=82.2

Q ss_pred             EEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCC
Q 030711           15 CLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG   93 (173)
Q Consensus        15 ~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (173)
                      ++++.+++|||++|... +|.|++|||++|+|||+++||+||++||||+.+..+.....  ..+.++..           
T Consensus       145 v~v~~~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~--~~~~~~~~-----------  211 (269)
T 1vk6_A          145 VAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTS--QPWPFPQS-----------  211 (269)
T ss_dssp             EEEEETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE--EEEETTEE-----------
T ss_pred             EEEEeCCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEE--EecCCCCE-----------
Confidence            45566799999999864 48999999999999999999999999999999543322111  12223221           


Q ss_pred             ccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhh
Q 030711           94 EWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN  160 (173)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~  160 (173)
                           ...+|.+.....  .+..    +.+|+.+++|++++++..+..+  ..+...+++.+...++
T Consensus       212 -----~~~~f~a~~~~~--~~~~----~~~E~~~~~W~~~~el~~l~~~--~si~~~li~~~l~~~r  265 (269)
T 1vk6_A          212 -----LMTAFMAEYDSG--DIVI----DPKELLEANWYRYDDLPLLPPP--GTVARRLIEDTVAMCR  265 (269)
T ss_dssp             -----EEEEEEEEEEEC--CCCC----CTTTEEEEEEEETTSCCSCCCT--TSHHHHHHHHHHHHHH
T ss_pred             -----EEEEEEEEECCC--CcCC----CCcceEEEEEEEHHHhhhcccC--cHHHHHHHHHHHHHHH
Confidence                 234555555432  2222    2368899999999999886543  3566666666555544

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.79  E-value=7.3e-19  Score=125.35  Aligned_cols=111  Identities=22%  Similarity=0.309  Sum_probs=74.0

Q ss_pred             ccceeEEEEEecCC--cEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCc
Q 030711            8 YRPNVGVCLINSDS--QIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (173)
Q Consensus         8 ~~~~v~~~i~~~~~--~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (173)
                      .+.++++++++.++  ++||++|..    .+|.|.+|||++++||++.+||+||++||||+.+..+......  .+.+..
T Consensus        33 ~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~--~~~~~~  110 (194)
T 1nqz_A           33 YRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGEL--DDVFTP  110 (194)
T ss_dssp             CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEEC--CCEEET
T ss_pred             CceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEc--cCccCC
Confidence            55666667677777  899999874    4689999999999999999999999999999985432211111  011000


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccc-cccCCCCCCcccceeeEeCHHHH-HHh
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESE-INLANGEADPEFAEWKWASPEEV-VEQ  139 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~e~-~~~  139 (173)
                                    .+...++|++..... .. ..    .+.+|+.++.|++++++ .+.
T Consensus       111 --------------~~~~~~~f~~~~~~~-~~~~~----~~~~E~~~~~W~~~~el~~~~  151 (194)
T 1nqz_A          111 --------------VGFHVTPVLGRIAPE-ALDTL----RVTPEVAQIITPTLAELRAVP  151 (194)
T ss_dssp             --------------TTEEEEEEEEEECGG-GGGGC----CCCTTEEEEECCBHHHHHHSC
T ss_pred             --------------CCeEEEEEEEEecCC-ccccC----CCccceeEEEEEEHHHhccCC
Confidence                          011235566655422 11 12    23368899999999999 664

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.78  E-value=7e-20  Score=122.03  Aligned_cols=105  Identities=27%  Similarity=0.393  Sum_probs=71.1

Q ss_pred             EEEEecCCcEEEEEecCC---CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711           14 VCLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL   90 (173)
Q Consensus        14 ~~i~~~~~~vLl~~r~~~---~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (173)
                      +++++.++++||++|...   +|.|.+|||++++||++.+||.||+.||||+.+... ..+.. ..+.++...       
T Consensus         9 ~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~-~~~~~-~~~~~~~~~-------   79 (129)
T 1mut_A            9 GIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF-SLFEK-LEYEFPDRH-------   79 (129)
T ss_dssp             EECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEE-CCCCC-CBCCCSSCE-------
T ss_pred             EEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccc-eEEEE-EEEecCCce-------
Confidence            355678899999998863   589999999999999999999999999999985322 11211 122222211       


Q ss_pred             cCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           91 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                             ....+|.+.....  ..      ..+|+.++.|++++++.++..+
T Consensus        80 -------~~~~~~~~~~~~~--~~------~~~e~~~~~W~~~~el~~~~~~  116 (129)
T 1mut_A           80 -------ITLWFWLVERWEG--EP------WGKEGQPGEWMSLVGLNADDFP  116 (129)
T ss_dssp             -------EECCCEEEEECSS--CC------CCCSSCCCEEEESSSCCTTTSC
T ss_pred             -------EEEEEEEEEccCC--cc------CCcccceeEEeCHHHcccccCC
Confidence                   0123444444322  11      1247788999999999987653

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.78  E-value=2.5e-19  Score=128.64  Aligned_cols=131  Identities=11%  Similarity=0.132  Sum_probs=79.0

Q ss_pred             CCccceeEEEEEecCCcEEEEEecCCC------CeEEC-CCcccCCCCC------HHHHHHHHHHHHhCCchhhhhhccC
Q 030711            6 SGYRPNVGVCLINSDSQIFVASRLNVP------GAWQM-PQGGIEDGED------PKLAAMRELREETGIVSAEIIAEVP   72 (173)
Q Consensus         6 ~~~~~~v~~~i~~~~~~vLl~~r~~~~------~~w~l-PgG~ie~gE~------~~~aa~RE~~EEtGl~~~~~~~~~~   72 (173)
                      ..++..+..+|+..++++||++|...+      |.|++ |||++|+|||      +.+||+||++||||+.+... ..++
T Consensus        64 ~~~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~-~~ig  142 (211)
T 3e57_A           64 ETTKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLREL-EFLG  142 (211)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEE-EEEE
T ss_pred             CcccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeecc-EEEE
Confidence            347778888888889999999997533      67999 9999999998      49999999999999974322 1111


Q ss_pred             Cccccc-CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHH
Q 030711           73 NWLTYD-FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV  151 (173)
Q Consensus        73 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~  151 (173)
                      . ..+. ++....             ....+|.+...  .  ..+.    .+|..+++|++++++.++..... ...+-+
T Consensus       143 ~-~~~~~~~~~~~-------------~l~~~f~~~~~--~--g~~~----~~E~~~~~W~~~~eL~~~~~~le-~wS~lv  199 (211)
T 3e57_A          143 L-INSSTTEVSRV-------------HLGALFLGRGK--F--FSVK----EKDLFEWELIKLEELEKFSGVME-GWSKIS  199 (211)
T ss_dssp             E-EECCSSHHHHT-------------EEEEEEEEEEE--E--EEES----CTTTCEEEEEEHHHHHHHGGGCC-HHHHHH
T ss_pred             E-EeccCCCCCeE-------------EEEEEEEEEeC--C--ceeC----CCCeEEEEEEEHHHHHHhHhhcc-chhHHH
Confidence            1 1111 111100             01123444433  1  2221    24778999999999999744321 334444


Q ss_pred             HHHHhhhhh
Q 030711          152 MRTFRPYLN  160 (173)
Q Consensus       152 ~~~l~~~~~  160 (173)
                      ++.+.++++
T Consensus       200 l~~l~~~~~  208 (211)
T 3e57_A          200 AAVLLNLFL  208 (211)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHh
Confidence            455544443

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.78  E-value=6e-19  Score=125.38  Aligned_cols=122  Identities=20%  Similarity=0.226  Sum_probs=73.0

Q ss_pred             eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL   90 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (173)
                      .++++| ..+++|||++|.. +|.|.+|||++++||++.+||+||+.||||+.+..... +.. ..+.+....       
T Consensus         6 v~~~vi-~~~~~vLL~~r~~-~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~-~~~~~~~~~-------   74 (188)
T 3fk9_A            6 VTNCIV-VDHDQVLLLQKPR-RGWWVAPGGKMEAGESILETVKREYWEETGITVKNPEL-KGI-FSMVIFDEG-------   74 (188)
T ss_dssp             EEEEEE-EETTEEEEEECTT-TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEE-EEE-EEEEEEETT-------
T ss_pred             EEEEEE-EECCEEEEEEeCC-CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceE-EEE-EEEEecCCC-------
Confidence            344444 4578999999865 78999999999999999999999999999998532211 111 111111100       


Q ss_pred             cCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHH
Q 030711           91 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTF  155 (173)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l  155 (173)
                          ........++|.+.........     ..+...+.|++++++.++...   +....+++.+
T Consensus        75 ----~~~~~~~~~~f~a~~~~~~~~~-----~~e~~~~~W~~~~el~~~~l~---~~~~~~l~~~  127 (188)
T 3fk9_A           75 ----KIVSEWMLFTFKATEHEGEMLK-----QSPEGKLEWKKKDEVLELPMA---AGDKWIFKHV  127 (188)
T ss_dssp             ----EEEEEEEEEEEEESCEESCCCS-----EETTEEEEEEEGGGGGGSCCC---HHHHHHHHHH
T ss_pred             ----cceEEEEEEEEEEECCCCCCcC-----CCCCEeEEEEEHHHhhhCCCC---HHHHHHHHHH
Confidence                0000113344444322222111     134568999999999986442   4444444443

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.78  E-value=7.6e-19  Score=120.78  Aligned_cols=119  Identities=16%  Similarity=0.158  Sum_probs=71.8

Q ss_pred             ccceeEEEEEecCCc----EEEEEecC--CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCc
Q 030711            8 YRPNVGVCLINSDSQ----IFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~----vLl~~r~~--~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (173)
                      .+.+++++|++ +++    +||++|..  ++| |.+|||++++|||+.+||+||+.||||+.+... ..+.. ..+.+..
T Consensus         7 ~~~~~~~ii~~-~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~~~-~~~~~~~   82 (155)
T 2b06_A            7 TILTNICLIED-LETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNP-QLVGI-KNWPLDT   82 (155)
T ss_dssp             EEEEEEEEEEE-TTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESC-EEEEE-EEEECTT
T ss_pred             cEEEEEEEEEE-CCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCC-cEEEE-EeeccCC
Confidence            55666666666 566    88888775  345 899999999999999999999999999985322 11111 1111111


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHH
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRT  154 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~  154 (173)
                      .               .....+++.+.......      ...|+.+++|++++++.++...   .....+++.
T Consensus        83 ~---------------~~~~~~~~~~~~~~~~~------~~~e~~~~~W~~~~el~~~~~~---~~~~~~l~~  131 (155)
T 2b06_A           83 G---------------GRYIVICYKATEFSGTL------QSSEEGEVSWVQKDQIPNLNLA---YDMLPLMEM  131 (155)
T ss_dssp             S---------------CEEEEEEEEECEEEECC------CCBTTBEEEEEEGGGGGGSCBC---TTHHHHHHH
T ss_pred             C---------------ceEEEEEEEEEecCCCC------CCCcceeeEEeeHHHhhhCCCC---hhHHHHHHH
Confidence            0               01223333333211111      1247789999999999997654   344444443

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.78  E-value=2.9e-19  Score=128.78  Aligned_cols=110  Identities=15%  Similarity=0.255  Sum_probs=71.9

Q ss_pred             ceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcc--cccCCccccccc
Q 030711           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWL--TYDFPPAVKTKV   87 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (173)
                      .+|.++|++ +++|||++|.  ++.|.+|||++++|||+.+||+||++||||+.+..... +....  .+.++...    
T Consensus        71 ~~v~~vv~~-~~~vLLvrr~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~----  142 (206)
T 3o8s_A           71 LDTRAAIFQ-EDKILLVQEN--DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRV-VAILDKHKNNPAKSA----  142 (206)
T ss_dssp             EEEEEEEEE-TTEEEEEECT--TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEE-EEEEEHHHHCC--------
T ss_pred             ccEEEEEEE-CCEEEEEEec--CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEeccccCCCCCC----
Confidence            455556666 5899999988  78999999999999999999999999999998532211 11110  11111111    


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                              ......+|.+.....  .+..     .+|+.++.|++++++.++...
T Consensus       143 --------~~~~~~~~~~~~~~~--~~~~-----~~E~~~~~w~~~~el~~l~~~  182 (206)
T 3o8s_A          143 --------HRVTKVFILCRLLGG--EFQP-----NSETVASGFFSLDDLPPLYLG  182 (206)
T ss_dssp             ---------CEEEEEEEEEEEEE--CCCC-----CSSCSEEEEECTTSCCCBCTT
T ss_pred             --------ceEEEEEEEEEecCC--eecC-----CCCceEEEEEeHHHhhhccCC
Confidence                    011234455544432  2111     158899999999999988654

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.78  E-value=1.3e-18  Score=123.74  Aligned_cols=101  Identities=23%  Similarity=0.266  Sum_probs=69.5

Q ss_pred             eeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      ++++++++ +++|||++|...  ++.|.+|||++++|||+.+||+||++||||+.+.. ...+.   .+.++..      
T Consensus        42 ~v~~ii~~-~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~-~~~~~---~~~~~~~------  110 (189)
T 3cng_A           42 IVGCIPEW-ENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEI-RELYA---VYSLPHI------  110 (189)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEE-EEEEE---EEEEGGG------
T ss_pred             EEEEEEEe-CCEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCcccc-ceeEE---EEecCCC------
Confidence            45555555 789999999863  57899999999999999999999999999998532 11111   1222211      


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHH
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVV  137 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~  137 (173)
                              ....++|.+.....  ...     ..+|+.++.|++++++.
T Consensus       111 --------~~~~~~f~~~~~~~--~~~-----~~~E~~~~~W~~~~el~  144 (189)
T 3cng_A          111 --------SQVYMLFRAKLLDL--DFF-----PGIESLEVRLFGEQEIP  144 (189)
T ss_dssp             --------TEEEEEEEEEECCS--CCC-----CCTTEEEEEEECTTTCC
T ss_pred             --------cEEEEEEEEEeCCC--ccC-----CCccceeEEEECHHHcC
Confidence                    11235555555432  211     12588899999999998

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.77  E-value=3.1e-18  Score=123.83  Aligned_cols=117  Identities=23%  Similarity=0.271  Sum_probs=74.3

Q ss_pred             cceeEEEEEecC----CcEEEEEecCC---CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCc
Q 030711            9 RPNVGVCLINSD----SQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (173)
Q Consensus         9 ~~~v~~~i~~~~----~~vLl~~r~~~---~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (173)
                      +.+|+++.+..+    +++||+++.+.   ++.|++|||++++||++.+||+||++||||+.+... ..+..+  +..+ 
T Consensus        61 ~~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~-~~l~~~--~~~~-  136 (212)
T 2dsc_A           61 ADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIA-ECSPAV--CMDP-  136 (212)
T ss_dssp             CSEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEE-EECCCE--ESCT-
T ss_pred             CCEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccce-EEeccE--EcCC-
Confidence            346666544333    47999887553   358999999999999999999999999999985322 111111  1111 


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccc-cccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESE-INLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                                  .+.....++|++.+...... .......+++|+..+.|++++++.+++.
T Consensus       137 ------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          137 ------------GLSNCTIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             ------------TTBCCEEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             ------------CccCceEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence                        11122345666665432211 1001123457899999999999999876

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.77  E-value=4.9e-18  Score=131.33  Aligned_cols=118  Identities=21%  Similarity=0.221  Sum_probs=76.6

Q ss_pred             ccceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhh--hhccCCcccccCCccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPAV   83 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~~~~   83 (173)
                      .+.+++++|+ .++++||++|...  +|.|.+|||++++|||+.+||+||++||||+.+...  ...+.....+.++...
T Consensus       207 ~~~~v~~vv~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~  285 (352)
T 2qjt_B          207 NFVTVDALVI-VNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRS  285 (352)
T ss_dssp             EEEEEEEEEE-ETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSC
T ss_pred             CceEEEEEEE-ECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCC
Confidence            3455666666 6789999999864  478999999999999999999999999999985322  1111111223333321


Q ss_pred             ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCH-HHHHHh
Q 030711           84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASP-EEVVEQ  139 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~-~e~~~~  139 (173)
                      ...          ....++|++.+.........   .+.+|+.+++|+++ +++.++
T Consensus       286 ~~~----------~~~~~~f~~~~~~~~~~~~~---~~~~E~~~~~W~~~~~el~~~  329 (352)
T 2qjt_B          286 VRG----------RTISHVGLFVFDQWPSLPEI---NAADDAKDVKWISLGSNIKNI  329 (352)
T ss_dssp             TTS----------EEEEEEEEEEECSCSSCCCC---CCCTTEEEEEEEESSHHHHHT
T ss_pred             CCc----------cEEEEEEEEEEeCCCCCCcc---CCCccceEEEEecHHHHHHhh
Confidence            100          01234566665433211111   12368899999999 999986

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.76  E-value=4.7e-18  Score=130.83  Aligned_cols=117  Identities=16%  Similarity=0.214  Sum_probs=72.3

Q ss_pred             ccceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhh--hhccCCcccccCCccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPAV   83 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~~~~   83 (173)
                      .+.+|+++|+ .++++||++|...  +|.|.+|||++++|||+.+||+||++||||+.+...  ...+.....+.++...
T Consensus       202 ~~~~v~~vi~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  280 (341)
T 2qjo_A          202 TFITTDAVVV-QAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRS  280 (341)
T ss_dssp             CEEEEEEEEE-ETTEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSC
T ss_pred             CceEEEEEEE-eCCEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCC
Confidence            3456666666 5789999998863  478999999999999999999999999999985332  2111111233333221


Q ss_pred             ccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           84 KTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                      ..          .....++|++....... ...   .+.+|+.+++|++++++.++
T Consensus       281 ~~----------~~~~~~~f~~~~~~~~~-~~~---~~~~e~~~~~W~~~~el~~~  322 (341)
T 2qjo_A          281 LR----------GRTITHAYFIQLPGGEL-PAV---KGGDDAQKAWWMSLADLYAQ  322 (341)
T ss_dssp             TT----------SCEEEEEEEEECCSSSC-CCC---C------CEEEEEHHHHHHT
T ss_pred             CC----------CcEEEEEEEEEecCCCc-Ccc---CCCCceeeEEEeeHHHHhhh
Confidence            00          01123456665543221 111   23368899999999999996

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.76  E-value=1e-17  Score=115.22  Aligned_cols=121  Identities=19%  Similarity=0.322  Sum_probs=75.7

Q ss_pred             ceeEEEEEec---CCcEEEEEecC---CCCeEECCCcccCCCCCHH-HHHHHHHHHHhC-CchhhhhhccCCcccccCCc
Q 030711           10 PNVGVCLINS---DSQIFVASRLN---VPGAWQMPQGGIEDGEDPK-LAAMRELREETG-IVSAEIIAEVPNWLTYDFPP   81 (173)
Q Consensus        10 ~~v~~~i~~~---~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~-~aa~RE~~EEtG-l~~~~~~~~~~~~~~~~~~~   81 (173)
                      ..+.++|.+.   ++++||++|..   .+|.|+||||.+++||++. +||+||+.|||| +.+... ..+.. ..+.|++
T Consensus        20 ~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~-~~l~~-~~~~~~~   97 (155)
T 1x51_A           20 SSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHL-RHLGE-VVHTFSH   97 (155)
T ss_dssp             EEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTC-EECCC-BCCBCSS
T ss_pred             EEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeee-eecce-EEEecCC
Confidence            3444455554   57999999875   3479999999999999996 999999999999 774221 11111 1222222


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~  157 (173)
                      ..              ....+|.+.....  ...      ..|..++.|++++++.++..+   ..+..+++.+..
T Consensus        98 ~~--------------~~~~~~~~~~~~~--~~~------~~e~~~~~W~~~~el~~~~~~---~~~~~~l~~~~~  148 (155)
T 1x51_A           98 IK--------------LTYQVYGLALEGQ--TPV------TTVPPGARWLTQEEFHTAAVS---TAMKKVFRVYQG  148 (155)
T ss_dssp             CE--------------EEEEEEEEECSSC--CCC------CCCCTTEEEEEHHHHHHSCCC---HHHHHHHHHHHH
T ss_pred             cc--------------EEEEEEEEEEcCC--CCC------CCCCCccEEccHHHhhhcCCC---HHHHHHHHHHHh
Confidence            11              0123444433321  111      135678999999999987553   556666655443

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.74  E-value=5.4e-17  Score=118.97  Aligned_cols=134  Identities=21%  Similarity=0.336  Sum_probs=84.0

Q ss_pred             CccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCC------CC---HHHHHHHHHHHHhCCchhhhh-hcc
Q 030711            7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDG------ED---PKLAAMRELREETGIVSAEII-AEV   71 (173)
Q Consensus         7 ~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~g------E~---~~~aa~RE~~EEtGl~~~~~~-~~~   71 (173)
                      .+++++++++++.++++||++|..    +||.|.+| ||++++|      |+   +.+||+||+.||||+.+..+. ..+
T Consensus        57 ~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l  136 (235)
T 2dho_A           57 LLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEI  136 (235)
T ss_dssp             CCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGS
T ss_pred             ceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhc
Confidence            478889999999999999999874    57899999 5999999      88   499999999999999853221 001


Q ss_pred             CCcccccCCcccccccccccCCccc-cceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh------cC
Q 030711           72 PNWLTYDFPPAVKTKVNRLWGGEWH-GQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD------YK  144 (173)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~------~~  144 (173)
                      .....+.|.....        ..+. ....++|.+..+   ..+.    ++++|+.+++|++++++.+++..      ..
T Consensus       137 ~~l~~~~y~~~~~--------~~~~~~e~~~vf~~~~~---~~~~----~~~~Ev~~~~wv~~~el~~~l~~~~~~~~~f  201 (235)
T 2dho_A          137 NYLTRIHYKAQSD--------GIWGEHEIDYILLVRMN---VTLN----PDPNEIKSYCYVSKEELKELLKKAASGEIKI  201 (235)
T ss_dssp             EEEEEEEEEEECS--------SSBEEEEEEEEEEEECC---CCCC----CCTTTEEEEEEECHHHHHHHHHHHHTTSSCB
T ss_pred             EEEEEEEEeccCC--------CccceeEEEEEEEEEEC---CCCc----CChHHEEEEEEEcHHHHHHHHhhccCCCcEE
Confidence            1111111111000        0000 111233444332   2222    23469999999999999997654      22


Q ss_pred             chHHHHHHHHH
Q 030711          145 RPTYEEVMRTF  155 (173)
Q Consensus       145 ~~~~~~~~~~l  155 (173)
                      .+.+..+++.+
T Consensus       202 tp~~~~i~~~~  212 (235)
T 2dho_A          202 TPWFKIIAATF  212 (235)
T ss_dssp             CHHHHHHHHHT
T ss_pred             CHhHHHHHHHH
Confidence            25555555554

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.74  E-value=7.9e-18  Score=117.00  Aligned_cols=53  Identities=28%  Similarity=0.469  Sum_probs=43.7

Q ss_pred             eeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~   65 (173)
                      .+++++++.++++||++|.  +|.|.+|||++++|||+.+||+||+.||||+.+.
T Consensus        17 ~~~~~ii~~~~~vLL~~r~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   69 (163)
T 3f13_A           17 RRATAIIEMPDGVLVTASR--GGRYNLPGGKANRGELRSQALIREIREETGLRIN   69 (163)
T ss_dssp             EEEEEECEETTEEEEEECC-----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCC
T ss_pred             EEEEEEEEeCCEEEEEEEC--CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccc
Confidence            4444566677899999886  5899999999999999999999999999999953

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.73  E-value=2.2e-17  Score=128.41  Aligned_cols=135  Identities=17%  Similarity=0.243  Sum_probs=79.0

Q ss_pred             CCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCCccccce
Q 030711           20 DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQA   99 (173)
Q Consensus        20 ~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (173)
                      +.+|||++|.. .|.|.||||++++|||+.+||+||++||||+.+... ..+. ...+.++...... .+...+......
T Consensus        37 ~~~vLLv~r~~-~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~-~~l~-~~~~~~~~~g~~~-~~~~~~~~~~~~  112 (364)
T 3fjy_A           37 SIEVCIVHRPK-YDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLG-PYLC-EVEYPLSEEGKKT-RHSHDCTADTKH  112 (364)
T ss_dssp             TEEEEEEEETT-TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEE-EEEE-EEC----------------------C
T ss_pred             ceEEEEEEcCC-CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeec-cccc-eEEEeccCCCccc-ccccccccCceE
Confidence            34899999865 589999999999999999999999999999985322 1111 1122222110000 000000011234


Q ss_pred             EEEEEEEEccCccc------cccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhhh
Q 030711          100 QKWFLMKLTNDESE------INLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE  161 (173)
Q Consensus       100 ~~~~~~~~~~~~~~------~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (173)
                      .++|.+........      +......+++|+.+++|++++++.+++.   .+..+.+++.+.+.+..
T Consensus       113 ~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~---~~~~r~il~~~~~~l~~  177 (364)
T 3fjy_A          113 TLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILS---HSTDKDTLAVFVDRVQE  177 (364)
T ss_dssp             EEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCS---CHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhc---chhhHHHHHHHHHHhcc
Confidence            56676666543211      1111123447899999999999999865   25556666666665543

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.73  E-value=5.9e-17  Score=119.48  Aligned_cols=136  Identities=21%  Similarity=0.295  Sum_probs=84.7

Q ss_pred             CccceeEEEEEecCCcEEEEEecC----CCCeEECCC-cccCCC------CCH---HHHHHHHHHHHhCCchhhhh-hcc
Q 030711            7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQ-GGIEDG------EDP---KLAAMRELREETGIVSAEII-AEV   71 (173)
Q Consensus         7 ~~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lPg-G~ie~g------E~~---~~aa~RE~~EEtGl~~~~~~-~~~   71 (173)
                      .+++++++++++.++++||++|..    +||.|.+|+ |++++|      |++   .+||+||+.||||+.+..+. ..+
T Consensus        68 ~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l  147 (246)
T 2pny_A           68 LLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDI  147 (246)
T ss_dssp             CCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGS
T ss_pred             cEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCcccc
Confidence            478889999999999999999874    578999995 999999      887   99999999999999853211 001


Q ss_pred             CCcccccCCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh------cCc
Q 030711           72 PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD------YKR  145 (173)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~------~~~  145 (173)
                      .....+.|.....        ..+ ..+...++|.+... ..+.    ++++|+.+++|++++++.+++..      ...
T Consensus       148 ~~l~~~~y~~~~~--------~~~-~~~e~~~vf~~~~~-~~~~----~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ft  213 (246)
T 2pny_A          148 VFMTIYHHKAKSD--------RIW-GEHEICYLLLVRKN-VTLN----PDPSETKSILYLSQEELWELLEREARGEVKVT  213 (246)
T ss_dssp             EEEEEEEEEEESS--------SSB-EEEEEEEEEEEECC-CCCC----CCTTTEEEEEEECHHHHHHHHHHHHHTSSCBC
T ss_pred             EEEEEEEEEecCC--------Cce-eeeEEEEEEEEEEC-CCCC----CChHHeeEEEEEeHHHHHHHHHhccCCCceEC
Confidence            1111111111000        000 01122333333321 2222    23469999999999999987654      222


Q ss_pred             hHHHHHHHHHh
Q 030711          146 PTYEEVMRTFR  156 (173)
Q Consensus       146 ~~~~~~~~~l~  156 (173)
                      +.+..+++.+.
T Consensus       214 p~~~~i~~~~l  224 (246)
T 2pny_A          214 PWLRTIAERFL  224 (246)
T ss_dssp             HHHHHHHHHTH
T ss_pred             HhHHHHHHHHH
Confidence            55555555543

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.70  E-value=1.1e-16  Score=119.93  Aligned_cols=111  Identities=19%  Similarity=0.296  Sum_probs=69.9

Q ss_pred             cceeEEEEEe--c---CCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCc
Q 030711            9 RPNVGVCLIN--S---DSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (173)
Q Consensus         9 ~~~v~~~i~~--~---~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (173)
                      ..+|.++|+.  .   +++|||++|...  +|.|.+|||++++||++.+||+||+.||||+......  +.....+..+.
T Consensus        39 ~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~--l~~l~~~~~~~  116 (273)
T 2fml_A           39 SLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQEN--IEQLHSFSRPD  116 (273)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGG--EEEEEEECCTT
T ss_pred             ceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCc--EEEEEEEcCCC
Confidence            4456666654  2   248999999864  4789999999999999999999999999997632110  11111222222


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHH
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVE  138 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~  138 (173)
                      ...          ......++|++.+....    .   ...+|..++.|++++++.+
T Consensus       117 r~~----------~~~~~~~~y~a~~~~~~----~---~~~~E~~~~~W~~~~e~~~  156 (273)
T 2fml_A          117 RDP----------RGWVVTVSYLAFIGEEP----L---IAGDDAKEVHWFNLERHGQ  156 (273)
T ss_dssp             SST----------TSSEEEEEEEEECCCCC----C---CCCTTEEEEEEEEEEEETT
T ss_pred             CCC----------CceEEEEEEEEEeCCCC----C---CCCcceeeEEEEEhhHhhh
Confidence            110          00112456666555322    1   1235888999999997544

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.65  E-value=9.8e-16  Score=115.66  Aligned_cols=125  Identities=18%  Similarity=0.193  Sum_probs=73.8

Q ss_pred             cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch-----------hhhhhccCC-----ccc-ccCCcccc
Q 030711           22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-----------AEIIAEVPN-----WLT-YDFPPAVK   84 (173)
Q Consensus        22 ~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~-----------~~~~~~~~~-----~~~-~~~~~~~~   84 (173)
                      ++||++|.. .|.|.+|||++++||++.+||+||++||||+..           ..+...+..     +.. ..++....
T Consensus       140 ~vLl~~r~~-~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d  218 (292)
T 1q33_A          140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTD  218 (292)
T ss_dssp             EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCS
T ss_pred             EEEEEEecC-CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCCc
Confidence            589998876 589999999999999999999999999999972           122222110     000 11111100


Q ss_pred             cccccccCCccccceEEEEEEEEccCcc--ccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhhh
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDES--EINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE  161 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (173)
                               + ......+|.+.......  ....   .+.+|+.+++|++++++.++...+ ..++..+++.+..+...
T Consensus       219 ---------~-~~~~~~~f~~~~~~g~~~~~~~~---~~~~E~~~~~W~~~del~~L~~~h-~~il~~~~~~~~a~~~~  283 (292)
T 1q33_A          219 ---------N-AWMETEAVNYHDETGEIMDNLML---EAGDDAGKVKWVDINDKLKLYASH-SQFIKLVAEKRDAHWSE  283 (292)
T ss_dssp             ---------S-EEEEEEEEEEEESSSTTTTTCCC---CCCTTCSEEEEEECCTTCCCSTTH-HHHHHHHHHHHTCCCCS
T ss_pred             ---------c-cEEEEEEEEEEeCCCcccccccc---CCCCccceEEEEEcccCcccCHhH-HHHHHHHHHHhcCcccC
Confidence                     0 01123455555432211  1111   123688999999999998764432 25555555554444333

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.65  E-value=1.4e-16  Score=115.17  Aligned_cols=105  Identities=15%  Similarity=0.189  Sum_probs=66.3

Q ss_pred             EecCCcEEEEEecCCCCeEECCCcccCCCC-CHHHHHHHHHHHHhCCchhhhhh----ccCCcccccCCccccccccccc
Q 030711           17 INSDSQIFVASRLNVPGAWQMPQGGIEDGE-DPKLAAMRELREETGIVSAEIIA----EVPNWLTYDFPPAVKTKVNRLW   91 (173)
Q Consensus        17 ~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE-~~~~aa~RE~~EEtGl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   91 (173)
                      ++.++++||++|.  +|.|.||||++++|| |+.+||+||+.||||+.+.....    .+. ...+.++ .         
T Consensus        52 ~~~~~~vLl~~r~--~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~-~~~~~~~-~---------  118 (212)
T 1u20_A           52 VPIRRVLLMMMRF--DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRS-SQVREHP-Q---------  118 (212)
T ss_dssp             EECCEEEEEEEET--TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEE-EEEECTT-S---------
T ss_pred             EecCCEEEEEEeC--CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEE-eccccCC-C---------
Confidence            3556789998873  689999999999999 99999999999999998543210    111 1112222 0         


Q ss_pred             CCccccceEEEEEEEEccCcccc----ccCCCCCCcccceeeEeCHHHHHHh
Q 030711           92 GGEWHGQAQKWFLMKLTNDESEI----NLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                           ....++|.+.........    ......++.|+..+.|+|++++.+.
T Consensus       119 -----~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          119 -----KCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             -----CEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             -----cEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence                 112355655544321111    0000113357888999999999753

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.64  E-value=1.6e-15  Score=114.25  Aligned_cols=120  Identities=19%  Similarity=0.237  Sum_probs=79.5

Q ss_pred             ccceeEEEEEecCC---cEEEEEecC----CCCeE-ECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhcc-CCccccc
Q 030711            8 YRPNVGVCLINSDS---QIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV-PNWLTYD   78 (173)
Q Consensus         8 ~~~~v~~~i~~~~~---~vLl~~r~~----~~~~w-~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~   78 (173)
                      .+.+|.+.+++.++   ++||.+|+.    +||.| ..|+|++++||++.+||+||+.||+|+....+.... ....+|.
T Consensus       117 ~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~  196 (300)
T 3dup_A          117 RAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYC  196 (300)
T ss_dssp             CEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEE
T ss_pred             EEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEE
Confidence            67788888888876   899999984    78999 588999999999999999999999999853221100 0111222


Q ss_pred             CCcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           79 FPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                      +...          ..+.  ....|++...... +..+  .++++|+.+++|++++++.+++..
T Consensus       197 ~~~~----------~G~~--~E~~~vy~~~l~~-~~~p--~~~~~EV~~~~~v~~~El~~~l~~  245 (300)
T 3dup_A          197 MESP----------AGIK--PDTLFLYDLALPE-DFRP--HNTDGEMADFMLWPAAKVVEAVRT  245 (300)
T ss_dssp             EEET----------TEEE--EEEEEEEEEECCT-TCCC--CCTTSSEEEEEEEEHHHHHHHHHH
T ss_pred             EecC----------CCeE--EEEEEEEEEEecC-CCcC--CCCchHhheEEEECHHHHHHHHhc
Confidence            1110          0111  1233444333211 1111  134579999999999999998765

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.63  E-value=6.5e-16  Score=120.22  Aligned_cols=122  Identities=16%  Similarity=0.250  Sum_probs=82.3

Q ss_pred             cceeEEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +..++++|++.+++|||++|..   ++|.|+||||.+++| ++.+|+.||+.||||+.+.... .+. ...+.|++..  
T Consensus       240 ~~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~-~l~-~~~h~~~h~~--  314 (369)
T 3fsp_A          240 VPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTE-PIV-SFEHAFSHLV--  314 (369)
T ss_dssp             EEEEEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECC-CCC-EEEEECSSEE--
T ss_pred             EEEEEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeec-ccc-cEEEEcceEE--
Confidence            3345556677889999999985   458999999999999 9999999999999999853221 111 1223333211  


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhhh
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE  161 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (173)
                                  ...++|.+.....           ..|..++.|++++++.++..+   .....+++.+.+.+..
T Consensus       315 ------------~~~~~~~~~~~~~-----------~~e~~~~~Wv~~~el~~~~l~---~~~~~il~~l~~~~~~  364 (369)
T 3fsp_A          315 ------------WQLTVFPGRLVHG-----------GPVEEPYRLAPEDELKAYAFP---VSHQRVWREYKEWASG  364 (369)
T ss_dssp             ------------EEEEEEEEEECCS-----------SCCCTTEEEEEGGGGGGSCCC---HHHHHHHHHHHHHTC-
T ss_pred             ------------EEEEEEEEEEcCC-----------CCCccccEEeeHHHhhhCCCC---HHHHHHHHHHHHHhcC
Confidence                        0123444443321           146788999999999987553   6777777777665543

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.58  E-value=7.3e-15  Score=107.16  Aligned_cols=60  Identities=23%  Similarity=0.428  Sum_probs=49.6

Q ss_pred             CCCccceeEEEEEecC--C--cEEEEEecC----CCCeEECCCcccCCCCC--------------------HHHHHHHHH
Q 030711            5 PSGYRPNVGVCLINSD--S--QIFVASRLN----VPGAWQMPQGGIEDGED--------------------PKLAAMREL   56 (173)
Q Consensus         5 ~~~~~~~v~~~i~~~~--~--~vLl~~r~~----~~~~w~lPgG~ie~gE~--------------------~~~aa~RE~   56 (173)
                      ....|.+++++++++.  +  +|||++|..    .+|.|.||||+++++|+                    +..||+||+
T Consensus         4 ~~~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~   83 (232)
T 3qsj_A            4 MTDIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRET   83 (232)
T ss_dssp             CCCEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHH
T ss_pred             CCCCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHH
Confidence            3457888888777553  3  899999986    36899999999999886                    589999999


Q ss_pred             HHHhCCch
Q 030711           57 REETGIVS   64 (173)
Q Consensus        57 ~EEtGl~~   64 (173)
                      +||||+..
T Consensus        84 ~EE~Gl~l   91 (232)
T 3qsj_A           84 AEEIGWLL   91 (232)
T ss_dssp             HHHHSCCC
T ss_pred             HHHhCcee
Confidence            99999974

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.46  E-value=3.2e-14  Score=103.01  Aligned_cols=42  Identities=31%  Similarity=0.446  Sum_probs=37.0

Q ss_pred             cEEEEEecCCCCeEECCCcccCCCC-CHHHHHHHHHHHHhCCchh
Q 030711           22 QIFVASRLNVPGAWQMPQGGIEDGE-DPKLAAMRELREETGIVSA   65 (173)
Q Consensus        22 ~vLl~~r~~~~~~w~lPgG~ie~gE-~~~~aa~RE~~EEtGl~~~   65 (173)
                      ++||+.|.  ++.|.+|||++++|| ++.+||+||++||||+.+.
T Consensus        66 ~~ll~~r~--~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~  108 (217)
T 2xsq_A           66 AILMQMRF--DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAA  108 (217)
T ss_dssp             EEEEEEET--TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGG
T ss_pred             cEEEEEcc--CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCc
Confidence            56666665  589999999999999 9999999999999999854

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.28  E-value=1.6e-11  Score=93.59  Aligned_cols=103  Identities=12%  Similarity=0.212  Sum_probs=64.5

Q ss_pred             EEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHh-CCchhhhhhccCCcccccCCcccccccccccCC
Q 030711           15 CLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET-GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG   93 (173)
Q Consensus        15 ~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEt-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (173)
                      +|+..+++|||+  . ..| |.||||.++  ++..++|+||++||| |+.+. +...+.   .++.+..           
T Consensus       188 aii~~~g~vLL~--~-~~G-W~LPG~~~~--~~~~~~a~RE~~EEttGl~v~-~~~L~~---v~~~~~~-----------  246 (321)
T 3rh7_A          188 AVLEQQGAVFLA--G-NET-LSLPNCTVE--GGDPARTLAAYLEQLTGLNVT-IGFLYS---VYEDKSD-----------  246 (321)
T ss_dssp             EEEESSSCEEEB--C-SSE-EBCCEEEES--SSCHHHHHHHHHHHHHSSCEE-EEEEEE---EEECTTT-----------
T ss_pred             EEEEECCEEEEe--e-CCC-ccCCcccCC--CChhHHHHHHHHHHhcCCEEe-eceEEE---EEEcCCC-----------
Confidence            555667999999  2 247 999987554  444569999999997 99953 222221   1221110           


Q ss_pred             ccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHh
Q 030711           94 EWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFR  156 (173)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~  156 (173)
                         .+...+|.+......             ..+++||++++++.+...  .+.++.+++++.
T Consensus       247 ---~~~~i~f~~~~~~g~-------------~~e~~~f~~~elp~~~~~--~~~~~~~L~~y~  291 (321)
T 3rh7_A          247 ---GRQNIVYHALASDGA-------------PRQGRFLRPAELAAAKFS--SSATADIINRFV  291 (321)
T ss_dssp             ---CCEEEEEEEEECSSC-------------CSSSEEECHHHHTTCEES--SHHHHHHHHHHH
T ss_pred             ---ceEEEEEEEEeCCCC-------------eeeeEEECHHHCCCcccC--CHHHHHHHHHHH
Confidence               112456666665321             257899999999986432  366666665543

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.22  E-value=6e-11  Score=83.67  Aligned_cols=121  Identities=20%  Similarity=0.240  Sum_probs=74.0

Q ss_pred             ccceeEEEEE-ecCC--cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch-----hhhhhccCCcccccC
Q 030711            8 YRPNVGVCLI-NSDS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-----AEIIAEVPNWLTYDF   79 (173)
Q Consensus         8 ~~~~v~~~i~-~~~~--~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~-----~~~~~~~~~~~~~~~   79 (173)
                      .|++|.++++ ++++  +|||+++.  .+.|.||||.+++||+..+|+.||+.||+|+..     ..+-..++.+.+..+
T Consensus        57 ~R~sV~avil~~~~~~phVLLlq~~--~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~wwRp~f  134 (208)
T 3bho_A           57 MRRTVEGVLIVHEHRLPHVLLLQLG--TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNF  134 (208)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEE--TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEEEECSS
T ss_pred             CceEEEEEEEEcCCCCcEEEEEEcC--CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEEecCCC
Confidence            6777777665 3444  69999875  469999999999999999999999999999531     122233344444444


Q ss_pred             CcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           80 PPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                      ......++.-+..+..  ....+|+..++.. ..+..      +......-+|+-|+-+.
T Consensus       135 et~~YPYlP~Hit~pK--E~~kly~V~Lp~~-~~f~v------Pkn~kL~AvPLfely~N  185 (208)
T 3bho_A          135 EPPQYPYIPAHITKPK--EHKKLFLVQLQEK-ALFAV------PKNYKLVAAPLFELYDN  185 (208)
T ss_dssp             SSCCBSSCCTTCCSCS--EEEEEEEEECCSS-EEEEE------ETTCEEEEEEHHHHTTC
T ss_pred             CCcCCCCCCcccCchh--hheeeeeEecCcc-ceEec------CCCCeEEeecHHhhhcc
Confidence            4333333332222221  1234555555542 23333      13356777888887654

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.01  E-value=8.6e-11  Score=82.04  Aligned_cols=55  Identities=16%  Similarity=0.240  Sum_probs=43.3

Q ss_pred             CCccceeEEEEEecC-----C------cEEEEEecCCCCeEECCCcccCCCC-CHHHHHHHHHHHHhCC
Q 030711            6 SGYRPNVGVCLINSD-----S------QIFVASRLNVPGAWQMPQGGIEDGE-DPKLAAMRELREETGI   62 (173)
Q Consensus         6 ~~~~~~v~~~i~~~~-----~------~vLl~~r~~~~~~w~lPgG~ie~gE-~~~~aa~RE~~EEtGl   62 (173)
                      +++++++.+.+.-++     +      .+||+.|.  +|.|+||||++|+|| |+++|+.||+.||+|+
T Consensus        18 ~~~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R~--~G~weFPGGkVe~gE~t~e~aL~REl~EElg~   84 (214)
T 3kvh_A           18 PGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRF--DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGC   84 (214)
T ss_dssp             TTCEEEEEEEEEEEEEEEETTTEEEEEEEEEEEET--TSCEECSEEEECTTTCCHHHHHHHSCCSCC--
T ss_pred             cCccEeeEEEEEcCCccccccccchhheEEEeeee--CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCC
Confidence            458889988776444     2      24555555  589999999999999 9999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	5e-45
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-16
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	6e-13
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	8e-13
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	1e-12
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	1e-12
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	5e-12
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	8e-11
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	2e-10
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	6e-10
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	3e-09
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	5e-09
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	6e-09
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-08
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	2e-07
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	3e-06
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	9e-06
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-05
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	4e-05
d1viua_	189	d.113.1.1 (A:) ADP-ribose pyrophosphatase homologu	9e-05
d1g0sa_	209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	8e-04
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	9e-04
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	0.002
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	0.002

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score =  144 bits (363), Expect = 5e-45
 Identities = 96/160 (60%), Positives = 123/160 (76%), Gaps = 1/160 (0%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MD  P GYR NVG+CL+N+D +IF ASRL++P AWQMPQGGI++GEDP+ AA+RELREET
Sbjct: 6   MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGE 120
           G+ SAE+IAEVP WLTYDFPP V+ K+N  WG +W GQAQKWFL K T  + EINL    
Sbjct: 66  GVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDG 125

Query: 121 -ADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL 159
              PEF EW W +PE++++  V++K+P Y+EV+  F P+L
Sbjct: 126 SEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL 165

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 2e-16
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 20/154 (12%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
           +R  +   + N+  +  +    +    W  P+G +E GED    A+R  +EE GI + ++
Sbjct: 16  FRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75

Query: 68  IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAE 127
                     +            +      +   ++L ++ + + EI L       E   
Sbjct: 76  TIIEGFKRELN------------YVARNKPKTVIYWLAEVKDYDVEIRL-----SHEHQA 118

Query: 128 WKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE 161
           ++W   EE  + A   +    +  ++    +L  
Sbjct: 119 YRWLGLEEACQLA---QFKEMKAALQEGHQFLCS 149

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 6e-13
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 25/150 (16%)

Query: 7   GYRPNVGVCLINSDSQIF--VASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
           GY+         S+S+    + S    P  W +P GG+E  E+P +AA+RE+ EE G+  
Sbjct: 9   GYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVK- 67

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPE 124
                 +   +               +  +        +++ +T    +      ++   
Sbjct: 68  ----GTLGRLVGI-------------FENQERKHRTYVYVLIVTEVLEDWE----DSVNI 106

Query: 125 FAEWKWASPEEVVEQAVDYKRPTYEEVMRT 154
             + +W   E+ ++  + Y +P       T
Sbjct: 107 GRKREWFKIEDAIK-VLQYHKPVQASYFET 135

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 60.6 bits (146), Expect = 8e-13
 Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 27/166 (16%)

Query: 10  PNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
           P  G  +++    Q  +         W  P+G I+  E     A+RE+ EETG       
Sbjct: 3   PVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGF------ 56

Query: 69  AEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEW 128
            +  + +            N        GQ  + +++   + ++           E ++ 
Sbjct: 57  -DCSSRI----------NPNEFIDMTIRGQNVRLYIIPGISLDTRFES---RTRKEISKI 102

Query: 129 KWASPEEVVEQAVDYKRPTY------EEVMRTFRPYLNENGIAAKC 168
           +W +  ++     +  +            +   + ++ +  IA   
Sbjct: 103 EWHNLMDLPTFKKNKPQTMKNKFYMVIPFLAPLKKWIKKRNIANNT 148

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 60.6 bits (146), Expect = 1e-12
 Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 14/129 (10%)

Query: 12  VGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
           +   + NS  +  +  R N P  G W +P G ++  E  + A  R    E G+       
Sbjct: 21  LDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAG 80

Query: 70  EVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWK 129
           +      + +           + G            +    E E+ L + + D    +++
Sbjct: 81  QFYGVWQHFYDDN--------FSGTDFTTHYVVLGFRFRVSEEELLLPDEQHD----DYR 128

Query: 130 WASPEEVVE 138
           W + + ++ 
Sbjct: 129 WLTSDALLA 137

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 60.2 bits (145), Expect = 1e-12
 Identities = 37/161 (22%), Positives = 59/161 (36%), Gaps = 26/161 (16%)

Query: 12  VGVCLINSDSQIFVASRLNVP------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
            GV L+N    I +     +P      G W +P G +EDGE+P+ AA+RE  EETG+   
Sbjct: 15  AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL-RV 73

Query: 66  EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEF 125
             +  +  +    FP  V                   +L +    ++           E 
Sbjct: 74  RPVKFLGAY-LGRFPDGVLILR-------------HVWLAEPEPGQTLAP----AFTDEI 115

Query: 126 AEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAA 166
           AE  + S E+  +     +   Y +    +   L E G  A
Sbjct: 116 AEASFVSREDFAQLYAAGQIRMY-QTKLFYADALREKGFPA 155

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 58.3 bits (140), Expect = 5e-12
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 22/151 (14%)

Query: 9   RPNVGV-CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
           +PNV V  +I  D +  +   +          P G +E GE    A  RE+ EETG    
Sbjct: 1   KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS-- 58

Query: 66  EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEF 125
            +   +     +       T +   + G+                         + D   
Sbjct: 59  FLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDR-----------------KLDTGI 101

Query: 126 AEWKWASPEEVVEQAVDYKRPTYEEVMRTFR 156
               W S +E+  +   ++ P   + +  + 
Sbjct: 102 VRAAWFSIDEIRAKQAMHRTPLVMQCIEDYH 132

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 8e-11
 Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 6/120 (5%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGI--VSAEIIAEVPNWLTYDFPPAVKTKVNR 89
            G W +P G ++ GE       RE  EE                   +         + +
Sbjct: 149 CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYK 208

Query: 90  LWGGEWHGQAQKWFL----MKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKR 145
            +  +       W               ++    EA  +  + KW    + ++    + +
Sbjct: 209 GYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQ 268

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 53.9 bits (129), Expect = 2e-10
 Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 25/127 (19%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
            G  + N+  ++ +       G W  P+G  E GE  + AA+RE+ EETG          
Sbjct: 5   AGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETG---------- 52

Query: 72  PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWA 131
                      +     R    +   +   WFLM+               +       W 
Sbjct: 53  -----VRAEVLLPLYPTRYVNPKGVEREVHWFLMRGEGAP--------RLEEGMTGAGWF 99

Query: 132 SPEEVVE 138
           SPEE   
Sbjct: 100 SPEEARA 106

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 52.9 bits (126), Expect = 6e-10
 Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 18/131 (13%)

Query: 9   RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
           R    + +   ++   V  +    GA+ +P G IE  E  + A  RE+ EE GI      
Sbjct: 17  RYAAYIIVSKPENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIG- 74

Query: 69  AEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEW 128
                     +                +     +++       S       E        
Sbjct: 75  ---------CYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLS-------EPLERTNTL 118

Query: 129 KWASPEEVVEQ 139
            W +PEE V  
Sbjct: 119 HWVAPEEAVRL 129

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 3e-09
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 12  VGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
             + L+    ++ +  +    GA  W    G +++GE  +  A REL+EE+G+    +  
Sbjct: 7   YTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL-- 64

Query: 70  EVPNWLTYDFPPAVKTKVNRL-----WGGEWHG---QAQKWF 103
                + ++F    +     +       G           WF
Sbjct: 65  HKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWF 106

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 50.3 bits (119), Expect = 5e-09
 Identities = 27/160 (16%), Positives = 48/160 (30%), Gaps = 14/160 (8%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
           V   ++  + ++ +       G +  P G +E  E P  A  RE  EETGI   E I   
Sbjct: 3   VTSGVLVENGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGI-VVEPIGFT 60

Query: 72  PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWA 131
              +  +        V      ++  +    F +                  +    +W 
Sbjct: 61  YGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVK---------RVGGDLKNGEWI 111

Query: 132 SPEEVVEQAVDYKRPTYEEVMRTFRPYLNENGIAAKCKSA 171
              E+         P   +V+      L   G  +K  +A
Sbjct: 112 DVREIDRIETF---PNVRKVVSLALSTLYRLGKISKLAAA 148

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 50.8 bits (121), Expect = 6e-09
 Identities = 20/141 (14%), Positives = 35/141 (24%), Gaps = 20/141 (14%)

Query: 6   SGYRPNVGVCLINSDSQIFVAS---------RLNVPGAWQMPQGGIEDGEDPKLAAM-RE 55
            GY+      L                     +   G    P G ++  +      + RE
Sbjct: 17  EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 76

Query: 56  LREETGI-VSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEI 114
           L EE G  ++   + E     +       K           H   ++  L ++   E+E 
Sbjct: 77  LEEELGPALATVEVTEDDYRSSQVREHPQKCVT--------HFYIKELKLEEIERIEAEA 128

Query: 115 NLANGEADPEFAEWKWASPEE 135
             A      E           
Sbjct: 129 VNAKDH-GLEVMGLIRVPLYT 148

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.1 bits (116), Expect = 1e-08
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 21/144 (14%)

Query: 17  INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLT 76
           +    +  +      P  W  P+G ++ GED   AA+RE +EE  I   ++        T
Sbjct: 13  LAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHET 72

Query: 77  YDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEV 136
                         +  +   ++ K++L KL N +            E   WKW   E+ 
Sbjct: 73  LF------------YEAKGKPKSVKYWLAKLNNPDDVQ------LSHEHQNWKWCELEDA 114

Query: 137 VEQAVDYKRPTYEEVMRTFRPYLN 160
           ++ A          ++R F  +L 
Sbjct: 115 IKIA---DYAEMGSLLRKFSAFLA 135

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 22/132 (16%)

Query: 12  VGVCLINSDSQIFVASR-----LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
               L N+  Q+ V  R                G  + GE  + A +R  R E G+    
Sbjct: 5   FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV-EIT 63

Query: 67  IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFA 126
               +     Y                              T    +IN      D E  
Sbjct: 64  PPESIYPDFRYRAT----------DPSGIVENEVCPVFAARTTSALQIN------DDEVM 107

Query: 127 EWKWASPEEVVE 138
           +++W    +V+ 
Sbjct: 108 DYQWCDLADVLH 119

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 25/124 (20%)

Query: 14  VCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVP 72
           +  I  D  I +A       G   +  G +E GE  + A  RE+ EE+GI          
Sbjct: 7   IVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIK------VKN 60

Query: 73  NWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWAS 132
                  P              +       F+ +  + +  I+        E  E  W  
Sbjct: 61  LRYVTSQPW------------PFPQSLMTAFMAEYDSGDIVID------PKELLEANWYR 102

Query: 133 PEEV 136
            +++
Sbjct: 103 YDDL 106

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (96), Expect = 9e-06
 Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 32/156 (20%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQM-----PQGGIEDGEDPKLAAMRELREETGIVSAE 66
             + + +   +I V  R                G ++  E    +A RE  EE GI +  
Sbjct: 33  TYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGI-AGV 91

Query: 67  IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFA 126
             AE   +  ++          R+WG  +                    L     + E +
Sbjct: 92  PFAEHGQF-YFEDKN------CRVWGALFSCV-----------SHGPFALQ----EDEVS 129

Query: 127 EWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNEN 162
           E  W +PEE+  +  ++   + +        ++  N
Sbjct: 130 EVCWLTPEEITARCDEFTPDSLK----ALALWMKRN 161

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 26/132 (19%)

Query: 12  VGVCLINSDSQIFVASR-----LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
           V   L NS  Q+++  R     L          G ++ GE  + A  RE REE  +    
Sbjct: 31  VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV---- 86

Query: 67  IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFA 126
                             +         +      +  +     ++           + +
Sbjct: 87  -------------EIDALSWRPLASFSPFQTTLSSFMCVYELRSDATPIF----NPNDIS 129

Query: 127 EWKWASPEEVVE 138
             +W +PE ++ 
Sbjct: 130 GGEWLTPEHLLA 141

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 28/139 (20%)

Query: 9   RPNVGV-CLI------NSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREE 59
           +P++ V  ++          ++ +  R   P   +W +P G +   E  + + +RE +EE
Sbjct: 35  KPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEE 94

Query: 60  TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANG 119
           TG+V ++   E     ++  P             +  G       +    +E  I     
Sbjct: 95  TGVVISQENIE--QLHSFSRP-----------DRDPRGWVVTVSYLAFIGEEPLI----- 136

Query: 120 EADPEFAEWKWASPEEVVE 138
            A  +  E  W + E   +
Sbjct: 137 -AGDDAKEVHWFNLERHGQ 154

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]} Length = 189

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 27/136 (19%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAW---------QMPQGGIEDGEDPKLAAMRELREETGI 62
             + L N+  +  V  R      W              G+ D ++P++   +E  EETG 
Sbjct: 46  ATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGY 105

Query: 63  VSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEAD 122
              E+      +++                    G  +          +++   A G  +
Sbjct: 106 EVGEVRKLFELYMSP------------------GGVTELIHFFIAEYSDNQRANAGGGVE 147

Query: 123 PEFAEWKWASPEEVVE 138
            E  E       + +E
Sbjct: 148 DEDIEVLELPFSQALE 163

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 28/137 (20%)

Query: 12  VGVCLINSDSQIFVASRLNVPGA---------WQMPQGGIEDGEDPKLAAMRELREETGI 62
             +   +      V        A          +M  G IE+GE  +  A RE  EE G+
Sbjct: 60  AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119

Query: 63  VSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEAD 122
           +       +    +    P   ++ + +  GE               D +  +  +G AD
Sbjct: 120 IVKRTKPVLSFLAS----PGGTSERSSIMVGE--------------VDATTASGIHGLAD 161

Query: 123 P-EFAEWKWASPEEVVE 138
             E       S E+  +
Sbjct: 162 ENEDIRVHVVSREQAYQ 178

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 35.9 bits (82), Expect = 9e-04
 Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 19/151 (12%)

Query: 12  VGVCLI--NSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETG--IVS 64
             +CLI      ++ +  R    N    +  P G +E+ E    + +RE+ EETG  I +
Sbjct: 10  TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQN 69

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHG---QAQKWF----LMKLTNDESEINLA 117
            +++      L       V       + G           W     +  L      + L 
Sbjct: 70  PQLVGIKNWPLDTGGRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDMLPLM 129

Query: 118 NGEADPEFAEWKWASPEEVVEQAVDYKRPTY 148
                P+ +E+ +    E      D+++  +
Sbjct: 130 EMMEAPDKSEFFYPRRTE-----DDWEKKIF 155

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 24/133 (18%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
           ++P V V  +     +FV       G    ++P G IE GEDP  AA REL E+TG    
Sbjct: 23  HKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTG---- 78

Query: 66  EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEF 125
            +  ++    +Y   P    +   ++  E   + +                A+ + D E 
Sbjct: 79  -LSGDLTYLFSYFVSPGFTDEKTHVFLAENLKEVE----------------AHPDED-EA 120

Query: 126 AEWKWASPEEVVE 138
            E  W  PEE +E
Sbjct: 121 IEVVWMRPEEALE 133

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 25/131 (19%)

Query: 12  VGVCLINSDSQIFVASRLNVPGA----WQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
             V ++       +  R    G         +G I+ GE    AA REL+EE G  + + 
Sbjct: 49  EAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGAND- 107

Query: 68  IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAE 127
                      F   +    +          AQ  +   L  DE           PE   
Sbjct: 108 ---------LTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDE-----------PEPLP 147

Query: 128 WKWASPEEVVE 138
                   +++
Sbjct: 148 QVRWPLAHMMD 158

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.97
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.91
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.9
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.89
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.89
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.89
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.88
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.88
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.88
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.88
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.88
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.87
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.87
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.86
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.85
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.85
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.84
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.84
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.83
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.82
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.82
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.81
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.8
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.77
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.77
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.68
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.64
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.64
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.58
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.49

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.97  E-value=1.8e-31  Score=184.85  Aligned_cols=159  Identities=61%  Similarity=1.225  Sum_probs=115.3

Q ss_pred             CCCCCCCccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (173)
Q Consensus         1 m~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (173)
                      |+..|..||++|+++|+|++++|||++|...+|.|.+|||++|.|||+++||+||++||||+.+..+...........++
T Consensus         6 ~~~~~~~yR~~Vg~vI~n~~~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   85 (165)
T d1jkna_           6 MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFP   85 (165)
T ss_dssp             CSSCCSSEEEEEEEEEECTTSCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECC
T ss_pred             cCCCCCCccccEEEEEEeCCCEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhcccccccccccccccccccc
Confidence            66667789999999999999999999999878999999999999999999999999999999964433222222222233


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccC-CCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhh
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLA-NGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL  159 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~  159 (173)
                      ..........+...+......+|.+.+.......++. .+.+..|+.+++|++++++.+++.+.+++++.++++.|.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i~~fk~~v~~~~l~~f~p~~  165 (165)
T d1jkna_          86 PKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL  165 (165)
T ss_dssp             HHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHSCGGGHHHHHHHHHHTGGGC
T ss_pred             ceeeceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhcchhhHHHHHHHHHHHHhhC
Confidence            2222222223334444445667777776655555542 223445899999999999999887766788888888776653

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=7.1e-24  Score=140.07  Aligned_cols=121  Identities=26%  Similarity=0.426  Sum_probs=80.9

Q ss_pred             cceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      +.+|+++|++.++++||++++  .|.|.+|||++++|||+.+||+||++||||+++..+.....  ..+.++...     
T Consensus         2 ~v~agavv~~~~~~vLl~~~~--~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~--~~~~~~~~~-----   72 (126)
T d1vcda1           2 ELGAGGVVFNAKREVLLLRDR--MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYP--TRYVNPKGV-----   72 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECT--TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE--EEEECTTSC-----
T ss_pred             EEEEEEEEEECCCEEEEEEcC--CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEee--eeeccCCCe-----
Confidence            567888999999999999876  48899999999999999999999999999998533222111  112222111     


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhh
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRP  157 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~  157 (173)
                              ....++|++.....   ...     .+|+.+++|++++++.+++.   .+....+++.+.+
T Consensus        73 --------~~~~~~~~~~~~~~---~~~-----~~e~~~~~W~~~~e~~~~~~---~~~~~~il~~~~~  122 (126)
T d1vcda1          73 --------EREVHWFLMRGEGA---PRL-----EEGMTGAGWFSPEEARALLA---FPEDLGLLEVALE  122 (126)
T ss_dssp             --------EEEEEEEEEEEESC---CCC-----CTTCCEEEEECHHHHHHHBC---SHHHHHHHHHHHH
T ss_pred             --------EEEEEEEEEEEcCC---CCC-----CccceEEEEEEHHHHhhccC---ChHHHHHHHHHHH
Confidence                    11234454444322   111     14788999999999998754   2444555554443

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=5.2e-23  Score=137.48  Aligned_cols=130  Identities=24%  Similarity=0.457  Sum_probs=83.3

Q ss_pred             ceeEEEEEec-C--CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccc
Q 030711           10 PNVGVCLINS-D--SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (173)
Q Consensus        10 ~~v~~~i~~~-~--~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (173)
                      +++++++++. +  .++||++|+..+|.|.+|||++++|||+.+||+||++||||+++..+...........+...    
T Consensus         3 raag~vv~~~~~~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~----   78 (137)
T d1ktga_           3 KAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK----   78 (137)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET----
T ss_pred             EEEEEEEEEEcCCCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCC----
Confidence            4556666542 2  36899998877899999999999999999999999999999995433222111111111111    


Q ss_pred             cccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhh
Q 030711           87 VNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLN  160 (173)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~  160 (173)
                              .......+|.+..... .....     .+|+.+++|++++++.++..   .+..+.+++.+.++++
T Consensus        79 --------~~~~~~~~~~~~~~~~-~~~~~-----~~E~~~~~W~~~~e~~~~~~---~~~~~~~l~~~~~~L~  135 (137)
T d1ktga_          79 --------GKPKSVKYWLAKLNNP-DDVQL-----SHEHQNWKWCELEDAIKIAD---YAEMGSLLRKFSAFLA  135 (137)
T ss_dssp             --------TEEEEEEEEEEEECSC-CCCCC-----CTTEEEEEEECHHHHHHHHC---CHHHHHHHHHHHHHHH
T ss_pred             --------cceEEEEEEEEEecCC-CCcCC-----CcceEEEEEEEHHHHHHhcC---CHHHHHHHHHHHHHhc
Confidence                    1111233444444332 22222     14889999999999998754   2556677777777764

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.89  E-value=5.7e-23  Score=140.57  Aligned_cols=116  Identities=27%  Similarity=0.394  Sum_probs=79.1

Q ss_pred             cceeEEEEEecCCcEEEEEecCC------CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNV------PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~------~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (173)
                      ++++++++++.++++||++|+..      +|.|++|||++++|||+.+||+||++||||+.+..+.. +. ...+.++..
T Consensus        12 ~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-i~-~~~~~~~~~   89 (158)
T d1sjya_          12 LRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF-LG-AYLGRFPDG   89 (158)
T ss_dssp             EEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEE-EE-EEEEECTTS
T ss_pred             eeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEE-EE-EEEEECCCC
Confidence            45777788889999999998752      36899999999999999999999999999998543222 11 112233322


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY  143 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  143 (173)
                      ..             ...++|.+..........    ...+|+.+++|++++++.++....
T Consensus        90 ~~-------------~~~~~~~~~~~~~~~~~~----~~~~E~~~~~w~~~~el~~l~~~~  133 (158)
T d1sjya_          90 VL-------------ILRHVWLAEPEPGQTLAP----AFTDEIAEASFVSREDFAQLYAAG  133 (158)
T ss_dssp             CE-------------EEEEEEEEEECSSCCCCC----CCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             CE-------------EEEEEEEEEEcCCcccCC----CCCcceEEEEEEEHHHHhhhhhCC
Confidence            11             123444444443322111    122589999999999999986544

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.89  E-value=5.2e-23  Score=138.98  Aligned_cols=123  Identities=17%  Similarity=0.198  Sum_probs=78.4

Q ss_pred             eeEEEEEecCCcEEEEEecCCC--CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccc
Q 030711           11 NVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (173)
Q Consensus        11 ~v~~~i~~~~~~vLl~~r~~~~--~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (173)
                      +|+ +|+..++++||++|...+  +.|.+|||++++|||+.+||+||++||||+.+..... +.. ....++...     
T Consensus         5 ~va-~ii~~~~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~-~~~-~~~~~~~~~-----   76 (146)
T d2b0va1           5 TVA-AVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVL-TGI-YHWTCASNG-----   76 (146)
T ss_dssp             EEE-EECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEE-EEE-EEEEETTTT-----
T ss_pred             EEE-EEEEeCCEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceE-EEE-EEEecCCCC-----
Confidence            444 345667999999988744  6899999999999999999999999999998532211 111 111111111     


Q ss_pred             cccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHH
Q 030711           89 RLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMR  153 (173)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~  153 (173)
                             .....++|.+........  .   ..++|+.+++|++++++.++......+.+.+++.
T Consensus        77 -------~~~~~~~~~~~~~~~~~~--~---~~~~E~~~~~W~~~~el~~~~~~~~~~~v~~~l~  129 (146)
T d2b0va1          77 -------TTYLRFTFSGQVVSFDPD--R---KLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIE  129 (146)
T ss_dssp             -------EEEEEEEEEEEEEEECTT--S---CCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHH
T ss_pred             -------eEEEEEEEEEEeecCCCC--C---CCCcceeEEEEeeHHHHhhCccccCCHHHHHHHH
Confidence                   011223444444332211  1   2236889999999999998876654455555544

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.89  E-value=5.8e-24  Score=144.00  Aligned_cols=132  Identities=14%  Similarity=0.160  Sum_probs=85.5

Q ss_pred             CccceeEEEEE--ecC-CcEEEEEecCCC--CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCc
Q 030711            7 GYRPNVGVCLI--NSD-SQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (173)
Q Consensus         7 ~~~~~v~~~i~--~~~-~~vLl~~r~~~~--~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (173)
                      .++.+|.++|+  +++ .+|||++|...|  |.|.+|||++++|||+.+||+||++||||++...+. .+..   +..+.
T Consensus         8 ~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~-~~~~---~~~~~   83 (147)
T d2fb1a2           8 TFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYME-QVGA---FGAID   83 (147)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEE-EEEE---ECCTT
T ss_pred             CcceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCccccee-eeeE---ecCCc
Confidence            46677777665  332 379999988643  899999999999999999999999999999853322 2211   11111


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhh
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL  159 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~  159 (173)
                      +..          .......+|++.+........      .+|..+++|+++++++++.+++. .++...++.|+..+
T Consensus        84 ~~~----------~~~~v~~~~~~~~~~~~~~~~------~~e~~~~~W~~~~~lp~lafDH~-~ii~~a~~~lr~k~  144 (147)
T d2fb1a2          84 RDP----------GERVVSIAYYALININEYDRE------LVQKHNAYWVNINELPALIFDHP-EMVDKAREMMKQKA  144 (147)
T ss_dssp             SSS----------SSCEEEEEEEEECCTTSSCHH------HHHHTTEEEEETTSCCCBSTTHH-HHHHHHHHHHHHHH
T ss_pred             ccC----------CCceEEEEEEEEecCCcccCC------CcchhheEEecHHhchhcccCHH-HHHHHHHHHHHHHh
Confidence            100          001123456665554332221      24778899999999998877543 56666666665543

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.3e-22  Score=136.10  Aligned_cols=134  Identities=19%  Similarity=0.305  Sum_probs=91.8

Q ss_pred             cceeEEEEE---------ecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccC
Q 030711            9 RPNVGVCLI---------NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDF   79 (173)
Q Consensus         9 ~~~v~~~i~---------~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   79 (173)
                      .++++++++         +.+.++||+++....+.|.+|||++++|||+.+||+||++||||+................+
T Consensus         8 ~~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~   87 (153)
T d1xsba_           8 LRACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNY   87 (153)
T ss_dssp             EEEEEEEEEEECSSCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEE
T ss_pred             hheeEEEEEeccccccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeecc
Confidence            456777777         45678999998875678999999999999999999999999999995433222111111111


Q ss_pred             CcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhh
Q 030711           80 PPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYL  159 (173)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~  159 (173)
                      ...            .......+|.+...........     .+|+.+++|++++++.+++.   .+..+.++..+.+++
T Consensus        88 ~~~------------~~~~~~~~~~~~~~~~~~~~~~-----~~E~~~~~W~~~~e~~~~~~---~~~~~~iL~~~~~~L  147 (153)
T d1xsba_          88 VAR------------NKPKTVIYWLAEVKDYDVEIRL-----SHEHQAYRWLGLEEACQLAQ---FKEMKAALQEGHQFL  147 (153)
T ss_dssp             ESS------------SCEEEEEEEEEEESCTTCCCCC-----CTTEEEEEEECHHHHHHHTC---SHHHHHHHHHHHHHH
T ss_pred             ccc------------CceeEEEEEEEEEeecccccCC-----CcceeEEEEEEHHHHHHhcC---CHHHHHHHHHHHHHH
Confidence            111            1111234555555544333332     25889999999999999875   367788888888887


Q ss_pred             hhc
Q 030711          160 NEN  162 (173)
Q Consensus       160 ~~~  162 (173)
                      .+.
T Consensus       148 ~~~  150 (153)
T d1xsba_         148 CSI  150 (153)
T ss_dssp             TTS
T ss_pred             hcc
Confidence            764

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.88  E-value=1.2e-23  Score=143.18  Aligned_cols=132  Identities=14%  Similarity=0.290  Sum_probs=78.3

Q ss_pred             eeEEEEEecC-CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        11 ~v~~~i~~~~-~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      .++++|++.+ ++|||+++....+.|.||||+++.|||+.+||+||++||||+++......... .....          
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~-~~~~~----------   72 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEF-IDMTI----------   72 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCE-EEEEE----------
T ss_pred             EEEEEEEECCCCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceE-Eeecc----------
Confidence            3466777776 68999998766688999999999999999999999999999985432221111 11110          


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCc------hHHHHHHHHHhhhhhhc
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKR------PTYEEVMRTFRPYLNEN  162 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~------~~~~~~~~~l~~~~~~~  162 (173)
                            ......+|++...........   .+.+|+.+++|+++++++++......      -.+...+..|+++++.+
T Consensus        73 ------~~~~~~~~~~~~~~~~~~~~~---~~~~Ei~~~~W~~~~el~~~~~~~~~~~~~~~~~v~~fi~~L~~wi~~~  142 (151)
T d2a6ta2          73 ------RGQNVRLYIIPGISLDTRFES---RTRKEISKIEWHNLMDLPTFKKNKPQTMKNKFYMVIPFLAPLKKWIKKR  142 (151)
T ss_dssp             ------TTEEEEEEEECCCCTTCCCC---------EEEEEEEEGGGSTTCC------CCGGGTTTGGGHHHHHHHHHHH
T ss_pred             ------cCceEEEEEEEEeccCCcccc---cCCCccceEEEEEHHHhhhhhhcccccccchhhhHHHHHHHHHHHHHHh
Confidence                  011223343333222222221   23368999999999999875432111      11234455666777663

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.7e-23  Score=138.09  Aligned_cols=123  Identities=20%  Similarity=0.280  Sum_probs=80.4

Q ss_pred             cceeEEEEEecCCcEEEEEecCC-CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      .++|.+++ ..++++||++|.+. +|.|.+|||++++|||+++||.||++||||+.+........  ..+.+.       
T Consensus         3 ~paViv~i-~~~~~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~--~~~~~~-------   72 (131)
T d1vk6a2           3 APCIIVAI-RRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTS--QPWPFP-------   72 (131)
T ss_dssp             EEEEEEEE-EETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEE--EEEETT-------
T ss_pred             ccEEEEEE-EeCCEEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEE--eccCcC-------
Confidence            45665444 45689999988764 47899999999999999999999999999998533221111  111111       


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY  158 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~  158 (173)
                               .....+|.+.....  .+..    ++.|+.+++|+++++++.+..+  ..+.+.+++.....
T Consensus        73 ---------~~~~~~f~~~~~~~--~~~~----~~~E~~~~~W~~~~el~~l~~~--~~i~r~li~~~l~~  126 (131)
T d1vk6a2          73 ---------QSLMTAFMAEYDSG--DIVI----DPKELLEANWYRYDDLPLLPPP--GTVARRLIEDTVAM  126 (131)
T ss_dssp             ---------EEEEEEEEEEEEEC--CCCC----CTTTEEEEEEEETTSCCSCCCT--TSHHHHHHHHHHHH
T ss_pred             ---------ceEEEEEEEEEcCC--cccC----CCccEEEEEEEcHHHHhhCCCC--hHHHHHHHHHHHHH
Confidence                     11234555555432  2322    3368999999999999887544  24555555554433

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=8.2e-23  Score=139.14  Aligned_cols=117  Identities=20%  Similarity=0.305  Sum_probs=77.7

Q ss_pred             ccceeEEEEEecCCcEEEEEecC----CCCeEEC-CCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCC-cccccCCc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPN-WLTYDFPP   81 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~l-PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~-~~~~~~~~   81 (173)
                      .|++++|+|+|.++++||++|+.    +||.|.+ |||++++|||+.+||+||+.|||||+.......... .+...++.
T Consensus         1 lHra~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~   80 (153)
T d1hzta_           1 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPS   80 (153)
T ss_dssp             CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTT
T ss_pred             CceEEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceeccccccccccc
Confidence            37799999999999999999973    5788887 999999999999999999999999985332211111 11111111


Q ss_pred             ccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           82 AVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                      ...             ....++++.... ...+.+    +++|+.+++|++++++.+.+..
T Consensus        81 ~~~-------------~~~~~~~~~~~~-~~~~~~----~~~Ev~~~~W~~~~el~~~i~~  123 (153)
T d1hzta_          81 GIV-------------ENEVCPVFAART-TSALQI----NDDEVMDYQWCDLADVLHGIDA  123 (153)
T ss_dssp             SCE-------------EEEECCEEEEEB-CSCCCC----CTTTEEEEEEECHHHHHHHHHH
T ss_pred             ccc-------------ceeEEEEEEEee-CCCccC----ChhheeEEEEeeHHHHHHHHHc
Confidence            110             011222222221 223332    3369999999999999987543

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=3e-22  Score=137.25  Aligned_cols=118  Identities=15%  Similarity=0.270  Sum_probs=74.8

Q ss_pred             ceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711           10 PNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      .+|+++|++.+++|||++|+..  +|.|.+|||++++|||+.+||+||++||||+.+............+.++...... 
T Consensus        19 ~~v~~vi~~~~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~-   97 (160)
T d1ryaa_          19 VSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT-   97 (160)
T ss_dssp             EEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBS-
T ss_pred             EEEEEEEEeCCCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccccccCC-
Confidence            4666788888899999999863  4789999999999999999999999999999843211111111122222111100 


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                            .. ..+...+.+...........    ..+|+.+++|++++++.+.
T Consensus        98 ------~~-~~~~~~~~~~~~~~~~~~~~----~~~E~~e~~W~~~~el~~~  138 (160)
T d1ryaa_          98 ------DF-TTHYVVLGFRFRVSEEELLL----PDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             ------SS-CEEEEEEEEEEECCGGGCCC----CSSSEEEEEEECHHHHHHC
T ss_pred             ------Cc-ceEEEEEEEEEEecCCCccC----CCcceEEEEEEEHHHhhcC
Confidence                  00 11122333333332222222    2358899999999999875

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.6e-21  Score=133.85  Aligned_cols=113  Identities=20%  Similarity=0.286  Sum_probs=78.5

Q ss_pred             ccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (173)
                      .|++|.++++|.++++||.+|+.    +||.|.+| ||++++|||+.+||+||++|||||....+....    .+.+...
T Consensus        29 ~h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~----~~~~~~~  104 (161)
T d2fkba1          29 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHG----QFYFEDK  104 (161)
T ss_dssp             CEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEE----EEEEEET
T ss_pred             cEeEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEE----EEEeecC
Confidence            57788889999999999999863    67999887 899999999999999999999999853332221    1111111


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY  143 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  143 (173)
                      ..            .....+|.+...   ..+.+    +++|+.+++|++++++.+.+...
T Consensus       105 ~~------------~~~~~~~~~~~~---~~~~~----~~~Ev~~~~w~~~~el~~~~~~~  146 (161)
T d2fkba1         105 NC------------RVWGALFSCVSH---GPFAL----QEDEVSEVCWLTPEEITARCDEF  146 (161)
T ss_dssp             TE------------EEEEEEEEEECC---CCCCC----CTTTEEEEEEECHHHHHTTGGGB
T ss_pred             Cc------------EEEEEEEEEEEC---CCCcC----ChhHeeEEEEEeHHHHhhhhhcc
Confidence            10            111233333322   22222    33689999999999999876544

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=135.65  Aligned_cols=123  Identities=20%  Similarity=0.313  Sum_probs=78.9

Q ss_pred             CccceeEEEEEecC--CcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccc
Q 030711            7 GYRPNVGVCLINSD--SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (173)
Q Consensus         7 ~~~~~v~~~i~~~~--~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (173)
                      .|+..+++++++.+  +.+||+++++.++.|.+|||++++|||+.+||+||++||||+.+... ..... ..+..+.   
T Consensus         9 ~~r~~a~~vv~~~~~~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~-~~~~~~~---   83 (135)
T d2fvva1           9 GYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLG-RLVGI-FENQERK---   83 (135)
T ss_dssp             SCEEEEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEE-EEEEE-EEETTTT---
T ss_pred             CCceEEEEEEEEecCCCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceee-EEEEE-EeeccCC---
Confidence            47888888887644  45778887777899999999999999999999999999999984321 11111 1111111   


Q ss_pred             cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHH
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVM  152 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~  152 (173)
                                   ....+|.+.+.........    ..+|+.+++|++++++.+++..+ .+.++..+
T Consensus        84 -------------~~~~~~~~~~~~~~~~~~~----~~~e~~~~~W~~~~e~~~~l~~~-~p~~~~~l  133 (135)
T d2fvva1          84 -------------HRTYVYVLIVTEVLEDWED----SVNIGRKREWFKIEDAIKVLQYH-KPVQASYF  133 (135)
T ss_dssp             -------------EEEEEEEEEEEEECSSCHH----HHHHCCCEEEEEHHHHHHHHTTT-CHHHHHHT
T ss_pred             -------------ccEEEEEEEEEeecCCCCC----CCCceeEEEEEEHHHHHHHHhcC-CHHHHHHh
Confidence                         0122233333221111111    11477889999999999987644 35555443

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.5e-22  Score=134.14  Aligned_cols=115  Identities=27%  Similarity=0.413  Sum_probs=75.2

Q ss_pred             EEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccccc
Q 030711           15 CLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW   91 (173)
Q Consensus        15 ~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (173)
                      +|++.++++||++|..   .+|.|.||||++++|||+.+||.||++||||+.+......  ....+.++..         
T Consensus        10 ii~~~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~--~~~~~~~~~~---------   78 (129)
T d1puna_          10 IIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLF--EKLEYEFPDR---------   78 (129)
T ss_dssp             ECBCTTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCS--EEEEEECSSE---------
T ss_pred             EEEECCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceee--eEEeeccccc---------
Confidence            5667789999999875   4589999999999999999999999999999985332111  1122322221         


Q ss_pred             CCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHh
Q 030711           92 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFR  156 (173)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~  156 (173)
                             ...++++.+......+.      ..|+.+++|++++++.++.++   +....+++.|+
T Consensus        79 -------~~~~~~~~~~~~~~~~~------~~E~~~~~W~~~~el~~~~~~---~~~~~ii~~L~  127 (129)
T d1puna_          79 -------HITLWFWLVERWEGEPW------GKEGQPGEWMSLVGLNADDFP---PANEPVIAKLK  127 (129)
T ss_dssp             -------EEEEEEEECCCCSSCCC------TTSSSCCEEECGGGCCTTTSC---GGGHHHHHHHH
T ss_pred             -------ceeEEEEEEeeccCcCC------CCccceEEEEEHHHcccCCCC---cchHHHHHHHH
Confidence                   12333344432222222      257889999999999886543   23334555444

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.85  E-value=6.2e-21  Score=130.97  Aligned_cols=115  Identities=21%  Similarity=0.283  Sum_probs=76.7

Q ss_pred             ccceeEEEEEecCCcEEEEEecC----CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~----~~~~w~lP-gG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (173)
                      .+++|+++|+|.+|++||.+|+.    +||.|.+| ||++++|||+.+||+||++||||+++...... .......+...
T Consensus        27 ~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~-~~~~~~~~~~~  105 (162)
T d2o5fa1          27 RVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWR-PLASFSPFQTT  105 (162)
T ss_dssp             GSEEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEE-EEEEECTTTSS
T ss_pred             eEEEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEE-EEEEecccccc
Confidence            66788889999999999998863    67999887 99999999999999999999999985332111 11111111111


Q ss_pred             cccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhc
Q 030711           83 VKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDY  143 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~  143 (173)
                      .               ...++++.+... ..+.+    +++|+.+++|++++++.+.+...
T Consensus       106 ~---------------~~~~~~~~~~~~-~~~~~----~~~Ev~~~~W~~~eel~~~~~~g  146 (162)
T d2o5fa1         106 L---------------SSFMCVYELRSD-ATPIF----NPNDISGGEWLTPEHLLARIAAG  146 (162)
T ss_dssp             C---------------SSEEEEEEEECS-SCCCC----CTTTCSEEEEECHHHHHHHHHHT
T ss_pred             c---------------eEEEEEEEEecC-CCccC----ChhHeeEEEEeeHHHHHHHHHCC
Confidence            0               012333333322 22222    33689999999999999987643

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.85  E-value=4.8e-21  Score=129.37  Aligned_cols=116  Identities=19%  Similarity=0.171  Sum_probs=70.8

Q ss_pred             ccceeEEEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccc
Q 030711            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (173)
Q Consensus         8 ~~~~v~~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (173)
                      .|.++.++|++.++.+||+.++. .|.|.+|||++++|||+.+||+||++||||++.... ..+.......+....    
T Consensus        16 ~r~~~~~vi~~~~~~~lll~~~~-~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~-~~~~~~~~~~~~~~~----   89 (147)
T d2azwa1          16 TRYAAYIIVSKPENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIG-CYLGEADEYFYSNHR----   89 (147)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT-TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEE-EEEEEEEEEEEETTT----
T ss_pred             CCCeEEEEEEECCCCEEEEEEcC-CCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeee-eEEEEEEEEeeeccC----
Confidence            46677778888877766655554 478999999999999999999999999999984321 111111111111110    


Q ss_pred             ccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhh
Q 030711           88 NRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAV  141 (173)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~  141 (173)
                             ........+++..........     ..+|+..++|++++++.+++.
T Consensus        90 -------~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~W~~~~e~~~~l~  131 (147)
T d2azwa1          90 -------QTAYYNPGYFYVANTWRQLSE-----PLERTNTLHWVAPEEAVRLLK  131 (147)
T ss_dssp             -------TEEEEEEEEEEEEEEEEECSS-----CC-CCSEEEEECHHHHHHHBS
T ss_pred             -------CceEEEEEEEEEEEeccccCC-----CCccceEEEEEEHHHHHHHcC
Confidence                   001112233333332211111     114778999999999988764

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.84  E-value=3.8e-21  Score=131.13  Aligned_cols=105  Identities=16%  Similarity=0.213  Sum_probs=65.3

Q ss_pred             EEEec-CCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccc
Q 030711           15 CLINS-DSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL   90 (173)
Q Consensus        15 ~i~~~-~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (173)
                      +|++. ++++||++|..   ..+.|.+|||++++|||+.+||.||++||||+.+..... +. ...+.+....       
T Consensus        14 ~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~-~~-~~~~~~~~~~-------   84 (155)
T d2b06a1          14 LIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL-VG-IKNWPLDTGG-------   84 (155)
T ss_dssp             EEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEE-EE-EEEEECTTSC-------
T ss_pred             EEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEE-EE-EEEeecCCCC-------
Confidence            34454 46888888774   225799999999999999999999999999998532211 11 1112111110       


Q ss_pred             cCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhh
Q 030711           91 WGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVD  142 (173)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~  142 (173)
                              +...+.+.+......+      ...|..+++|+++++++++...
T Consensus        85 --------~~~~~~~~~~~~~~~~------~~~e~~~~~W~~~~el~~l~~~  122 (155)
T d2b06a1          85 --------RYIVICYKATEFSGTL------QSSEEGEVSWVQKDQIPNLNLA  122 (155)
T ss_dssp             --------EEEEEEEEECEEEECC------CCBTTBEEEEEEGGGGGGSCBC
T ss_pred             --------eEEEEEEEEEecCCcc------CCCchheEEEEEHHHhccCCCC
Confidence                    1222333332222222      2257789999999999987553

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-21  Score=132.49  Aligned_cols=56  Identities=23%  Similarity=0.401  Sum_probs=48.0

Q ss_pred             ceeEEEEEecCCcEEEEEecCC--CCeEECCCcccCCCCCHHHHHHHHHHHHhCCchh
Q 030711           10 PNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (173)
Q Consensus        10 ~~v~~~i~~~~~~vLl~~r~~~--~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~   65 (173)
                      +.++++++..+++|||++|++.  .|.|.+|||++++|||+.+||+||++||||+++.
T Consensus         5 r~~~~v~i~~~~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~   62 (156)
T d1irya_           5 RLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVD   62 (156)
T ss_dssp             EEEEEECEECSSEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBS
T ss_pred             EEEEEEEEEECCEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCccc
Confidence            3455566667899999999873  3789999999999999999999999999999854

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=5.5e-21  Score=129.50  Aligned_cols=50  Identities=30%  Similarity=0.508  Sum_probs=43.9

Q ss_pred             EEEEecCCcEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch
Q 030711           14 VCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (173)
Q Consensus        14 ~~i~~~~~~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   64 (173)
                      .+|+..+++|||++|.. .|.|.+|||++++||++.+||+||++||||+++
T Consensus         5 ~~vi~~d~kvLl~~r~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   54 (152)
T d1k2ea_           5 SGVLVENGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVV   54 (152)
T ss_dssp             EEECEETTEEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEE
T ss_pred             EEEEEECCEEEEEEEcC-CCeEECCeeEEeCCccHHHHHHHHHHHHHCCce
Confidence            34445679999999875 678999999999999999999999999999985

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=2.1e-20  Score=127.58  Aligned_cols=113  Identities=27%  Similarity=0.441  Sum_probs=70.9

Q ss_pred             cceeEEEEEecCCcEEEEEecCCC---CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNVP---GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~~---~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (173)
                      +.+|++++++ ++++||+++.+.+   ..|++|||++|+||++.+||+||++||||+.+ .+......   +..+.    
T Consensus        24 ~~aV~vl~~~-~~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~-~~~~l~~~---~~~~g----   94 (158)
T d1v8ya_          24 KPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSG-DLTYLFSY---FVSPG----   94 (158)
T ss_dssp             CCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEE-EEEEEEEE---ESCTT----
T ss_pred             CCEEEEEEEE-CCEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcc-eeeeecce---ecCCC----
Confidence            3456666665 6899999977633   48999999999999999999999999999974 32222211   11111    


Q ss_pred             ccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcC
Q 030711           86 KVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYK  144 (173)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  144 (173)
                               ......++|++..... ...    ..+++|...+.|++++++.+++....
T Consensus        95 ---------~~~~~~~~f~a~~~~~-~~~----~~d~~E~~ev~w~~~~e~~~~i~~g~  139 (158)
T d1v8ya_          95 ---------FTDEKTHVFLAENLKE-VEA----HPDEDEAIEVVWMRPEEALERHQRGE  139 (158)
T ss_dssp             ---------TBCCEEEEEEEEEEEE-CC------------CEEEEECHHHHHHHHHTTS
T ss_pred             ---------cceEEEEEEEEccccc-ccc----CCCCCeeEEEEEEEHHHHHHHHHCCC
Confidence                     1112234555443321 111    23446888999999999999877654

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=3.3e-20  Score=131.26  Aligned_cols=118  Identities=19%  Similarity=0.292  Sum_probs=75.3

Q ss_pred             cceeEEEEEecCCcEEEEEecCCC-C--eEECCCcccC-CCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccc
Q 030711            9 RPNVGVCLINSDSQIFVASRLNVP-G--AWQMPQGGIE-DGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (173)
Q Consensus         9 ~~~v~~~i~~~~~~vLl~~r~~~~-~--~w~lPgG~ie-~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (173)
                      ..+|+++++++++++||+++.+.+ +  .|+||+|.+| +||++.+||+||+.||||+.+..+..........       
T Consensus        38 ~~~V~vl~~~~~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~-------  110 (202)
T d1mqea_          38 FGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAP-------  110 (202)
T ss_dssp             CCEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCT-------
T ss_pred             CCeEEEEEECCCCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccC-------
Confidence            346777778889999999987644 3  7999999999 7999999999999999999864433222111111       


Q ss_pred             cccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCc
Q 030711           85 TKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKR  145 (173)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~  145 (173)
                               .+..+..++|++...........   .+++|...+.|+|++++.+++.....
T Consensus       111 ---------g~~~~~~~~fla~~~~~~~~~~~---~~eee~i~v~w~~~~e~~~~i~~G~I  159 (202)
T d1mqea_         111 ---------GFSDESVRVYLATGLREVGRPEA---HHEEADMTMGWYPIAEAARRVLRGEI  159 (202)
T ss_dssp             ---------TTBCCCEEEEEEEEEEECCC-------------CEEEEEHHHHHHHHTTTSC
T ss_pred             ---------ccCCcEEEEEEEEeccccCCCCC---CCccceEEEEEEEHHHHHHHHHcCCC
Confidence                     11222345565554332222111   12235567999999999999876543

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.7e-20  Score=129.61  Aligned_cols=128  Identities=16%  Similarity=0.147  Sum_probs=79.9

Q ss_pred             EEEecCCcEEEEEecCCC---CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccccc
Q 030711           15 CLINSDSQIFVASRLNVP---GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW   91 (173)
Q Consensus        15 ~i~~~~~~vLl~~r~~~~---~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (173)
                      ++...+++++|+++.+.+   ..|+||||++|+||++.+||+||+.||||+.+..+......+....+            
T Consensus        53 vi~~~~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~------------  120 (186)
T d1vhza_          53 IVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSY------------  120 (186)
T ss_dssp             EEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTT------------
T ss_pred             EEEccCCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccc------------
Confidence            333457899999877644   36999999999999999999999999999986443322211111111            


Q ss_pred             CCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHH--HHHHhhhhhhcC
Q 030711           92 GGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEV--MRTFRPYLNENG  163 (173)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~--~~~l~~~~~~~~  163 (173)
                          .....++|++..... ...    ..+++|...+.|+|++++.+++..........+  +-.+.++++.++
T Consensus       121 ----~~~~~~~~~a~~~~~-~~~----~~de~E~~~~~~~~~~e~~~~i~~g~i~da~ti~al~~~~~~L~~~~  185 (186)
T d1vhza_         121 ----FSSKMNIVVAQDLYP-ESL----EGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREWLKGQG  185 (186)
T ss_dssp             ----CCCEEEEEEEEEEEE-CCC----CCCCSSCCCEEEEEGGGGGGGGGCTTTCBHHHHHHHHHHHHHHHHTT
T ss_pred             ----cceEEEEEEEEeccc-ccC----CCCCCcEEEEEEEeHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcC
Confidence                111234444432211 111    134568889999999999999876543222222  233456777654

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=9.1e-20  Score=129.14  Aligned_cols=99  Identities=19%  Similarity=0.337  Sum_probs=64.7

Q ss_pred             cEEEEEecCCC--CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCcccccccccccCCccccce
Q 030711           22 QIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQA   99 (173)
Q Consensus        22 ~vLl~~r~~~~--~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (173)
                      +|||++|...|  |.|.+|||++++|||+.+||+||++||||+......  +.....+..+.+..          .....
T Consensus        55 ~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~--l~~~~~~~~~~r~~----------~~~~i  122 (202)
T d2fmla2          55 KVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQEN--IEQLHSFSRPDRDP----------RGWVV  122 (202)
T ss_dssp             EEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGG--EEEEEEECCTTSST----------TSSEE
T ss_pred             EEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecce--eeeeeecccCCccc----------cceEE
Confidence            69999998744  799999999999999999999999999999843221  11112222222110          00112


Q ss_pred             EEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711          100 QKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                      ..+|.+.+....  ..     ..+|+.+++||+++++++.
T Consensus       123 ~~~~~~~~~~~~--~~-----~~~e~~~~~Wf~ld~l~~~  155 (202)
T d2fmla2         123 TVSYLAFIGEEP--LI-----AGDDAKEVHWFNLERHGQH  155 (202)
T ss_dssp             EEEEEEECCCCC--CC-----CCTTEEEEEEEEEEEETTE
T ss_pred             EEEEEEEeCCCC--cC-----CCcceeeEEEEeHHHCcch
Confidence            344544443321  11     2258899999999998763

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.77  E-value=1.1e-18  Score=122.02  Aligned_cols=110  Identities=25%  Similarity=0.375  Sum_probs=71.4

Q ss_pred             ccceeEE-EEEec-CCcEEEEEecC----CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhh--hccCCcccccC
Q 030711            8 YRPNVGV-CLINS-DSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII--AEVPNWLTYDF   79 (173)
Q Consensus         8 ~~~~v~~-~i~~~-~~~vLl~~r~~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~--~~~~~~~~~~~   79 (173)
                      +|.++.+ +++++ +.+|||++|..    .+|.|+||||++|+||++.+||+||+.||||+....+.  ..+....+   
T Consensus        30 ~r~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~---  106 (187)
T d1nqza_          30 YRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFT---  106 (187)
T ss_dssp             CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEE---
T ss_pred             CCccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceee---
Confidence            4444443 44433 45799999985    46899999999999999999999999999999853322  22221110   


Q ss_pred             CcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHh
Q 030711           80 PPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQ  139 (173)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  139 (173)
                      +.               +...+.|++.+.........    ..+|+..+.|++++++.+.
T Consensus       107 ~~---------------~~~V~p~v~~l~~~~~~~~~----~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_         107 PV---------------GFHVTPVLGRIAPEALDTLR----VTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             TT---------------TEEEEEEEEEECGGGGGGCC----CCTTEEEEECCBHHHHHHS
T ss_pred             cc---------------ccEEEEEEEEECCccccccc----cCCcceEEEeccHHHHhcC
Confidence            00               11234566666543222221    2258999999999999874

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1e-18  Score=124.06  Aligned_cols=120  Identities=14%  Similarity=0.127  Sum_probs=79.1

Q ss_pred             ceeEEEEEecC-CcEEEEEecCCC--------CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCC
Q 030711           10 PNVGVCLINSD-SQIFVASRLNVP--------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (173)
Q Consensus        10 ~~v~~~i~~~~-~~vLl~~r~~~~--------~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (173)
                      .+|++++++++ ++++|+++.+.+        -.|++|+|.+++||++++||+||+.||||+.+..+......   +..+
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~---~~sp  134 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSF---LASP  134 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEE---ESCT
T ss_pred             CEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeecccc---ccCC
Confidence            45666667664 779999988733        16999999999999999999999999999996554332221   1111


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCch
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRP  146 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~  146 (173)
                                   .+.....++|++.++..... ......+++|...+.|++++++.+++......
T Consensus       135 -------------g~~~e~~~~f~a~~~~~~~~-~~~~~~de~E~iev~~v~~~e~~~~i~~g~I~  186 (209)
T d1g0sa_         135 -------------GGTSERSSIMVGEVDATTAS-GIHGLADENEDIRVHVVSREQAYQWVEEGKID  186 (209)
T ss_dssp             -------------TTBCCEEEEEEEECCGGGCC---------CCSCEEEEEEHHHHHHHHHTTSSC
T ss_pred             -------------cccCCceEEEEEEEeccccc-CCCCCCCCCceeEEEEEeHHHHHHHHHcCCCC
Confidence                         12223456777765543221 11222355677889999999999998876543

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.68  E-value=5.9e-17  Score=106.50  Aligned_cols=115  Identities=15%  Similarity=0.263  Sum_probs=72.8

Q ss_pred             EEEEEecCCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccCCccccccccc
Q 030711           13 GVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (173)
Q Consensus        13 ~~~i~~~~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (173)
                      +++|++.+|++||.+|..   .+|.|+||||.++.+++ .+++.||+.||+|+.+... ..+. ...+.|++...     
T Consensus         8 ~~vi~~~~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~-~~l~-~~~H~fsh~~~-----   79 (127)
T d1rrqa2           8 VAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELT-EPIV-SFEHAFSHLVW-----   79 (127)
T ss_dssp             EEEEEESSSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEEC-SCCE-EEEEECSSEEE-----
T ss_pred             EEEEEECCCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEec-cccc-cceEecCCeEE-----
Confidence            335678899999999875   45899999999998777 7899999999999984221 1111 12233332210     


Q ss_pred             ccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhh
Q 030711           90 LWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPY  158 (173)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~  158 (173)
                               ...+|.+.....  .         ++..+++|++++++.++.++   ...+.+++.|+++
T Consensus        80 ---------~~~~~~~~~~~~--~---------~~~~~~~Wv~~~el~~~~~p---~~~~Ki~~~~~~~  125 (127)
T d1rrqa2          80 ---------QLTVFPGRLVHG--G---------PVEEPYRLAPEDELKAYAFP---VSHQRVWREYKEW  125 (127)
T ss_dssp             ---------EEEEEEEEEECC--S---------CCCTTEEEEEGGGGGGSCCC---HHHHHHHHHHHHH
T ss_pred             ---------EEEEEEEEECCC--C---------ccccceEEeeHHHHhHCCCC---hHHHHHHHHHHHh
Confidence                     122333332211  1         23457899999999997663   6788888887775

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=7.3e-16  Score=107.63  Aligned_cols=118  Identities=17%  Similarity=0.203  Sum_probs=73.7

Q ss_pred             ceeEEEEEec-CCcEEEEEecCCC---------CeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhccCCcccccC
Q 030711           10 PNVGVCLINS-DSQIFVASRLNVP---------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDF   79 (173)
Q Consensus        10 ~~v~~~i~~~-~~~vLl~~r~~~~---------~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   79 (173)
                      .+|++++++. +++++|+++.+.|         -.|.+|||.++ ||++.+||+||+.||||+.+..+......   +..
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~---~~s  119 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFEL---YMS  119 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEE---ESC
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEccee---ecC
Confidence            3667777764 5789999987622         26788999988 56689999999999999996544333221   111


Q ss_pred             CcccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCch
Q 030711           80 PPAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRP  146 (173)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~  146 (173)
                      |.             ++....++|++...... ... ..+.+++|...+.|+|++++.+++......
T Consensus       120 pG-------------~~~e~~~~f~a~~~~~~-~~~-~~~~~e~E~i~v~~~~~~e~~~~i~~g~i~  171 (189)
T d1viua_         120 PG-------------GVTELIHFFIAEYSDNQ-RAN-AGGGVEDEDIEVLELPFSQALEMIKTGEIR  171 (189)
T ss_dssp             TT-------------TBCCEEEEEEEECCTTC-C----------CCEEEEEEEHHHHHHHHHHTSCC
T ss_pred             cc-------------ccCceEEEEEEEECCcc-ccc-CCCCCCCccEEEEEEEHHHHHHHHHcCCCC
Confidence            11             12223456665544321 111 112344688899999999999998776443

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-16  Score=118.31  Aligned_cols=137  Identities=18%  Similarity=0.113  Sum_probs=77.1

Q ss_pred             cEEEEEecCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCCchhhhhhcc----CCcccccCCcccc---cccccccCCc
Q 030711           22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV----PNWLTYDFPPAVK---TKVNRLWGGE   94 (173)
Q Consensus        22 ~vLl~~r~~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~   94 (173)
                      ++||++|+. .|.|.||||++++||++.+||+||+.||||+.........    .............   .+........
T Consensus       140 qvLlIkR~d-~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprntd  218 (292)
T d1q33a_         140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTD  218 (292)
T ss_dssp             EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCS
T ss_pred             EEEEEEecC-CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCCCC
Confidence            488998876 6789999999999999999999999999999743211000    0000000000000   0000000000


Q ss_pred             cccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHhhhhhh
Q 030711           95 WHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFRPYLNE  161 (173)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (173)
                      ...-..++|.+............. ...+|..+++|++++++.++..++. .+++.+.+++.....+
T Consensus       219 ~aw~etva~~~h~~~~~~~~~~~l-~~~dEa~~v~W~~vde~~~L~~~H~-~il~~aa~~~~Ah~~e  283 (292)
T d1q33a_         219 NAWMETEAVNYHDETGEIMDNLML-EAGDDAGKVKWVDINDKLKLYASHS-QFIKLVAEKRDAHWSE  283 (292)
T ss_dssp             SEEEEEEEEEEEESSSTTTTTCCC-CCCTTCSEEEEEECCTTCCCSTTHH-HHHHHHHHHHTCCCCS
T ss_pred             CCEEEEEEEEEEEccccccccccc-CCCCchheEEEEEhhccccchhhHH-HHHHHHHHHHhccccC
Confidence            011123566666654432212111 1236889999999999988765442 5666666666554444

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.58  E-value=3.4e-15  Score=104.30  Aligned_cols=58  Identities=24%  Similarity=0.349  Sum_probs=47.1

Q ss_pred             CCccceeEEEEEecCCc-----------EEEEEecCCCCeEECCCcccCCCCC-HHHHHHHHHHHHhCCchh
Q 030711            6 SGYRPNVGVCLINSDSQ-----------IFVASRLNVPGAWQMPQGGIEDGED-PKLAAMRELREETGIVSA   65 (173)
Q Consensus         6 ~~~~~~v~~~i~~~~~~-----------vLl~~r~~~~~~w~lPgG~ie~gE~-~~~aa~RE~~EEtGl~~~   65 (173)
                      +++|+++.++++..+..           +|+++|.  .|.|.||||++++||+ +++||.||+.||||+.+.
T Consensus        17 ~g~r~a~~~~~~~~~~~~~~~~~~~~~~vl~~~r~--~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~   86 (196)
T d1u20a1          17 EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRF--DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALA   86 (196)
T ss_dssp             SSCEEEEEEEEEEECCCEETTTEECCEEEEEEEET--TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGG
T ss_pred             CCcceEEEEEEEcCCCceEEEEecCCcEEEEEEec--CCcEECCccccCCCCCcHHHHHHHHHHHHhCccce
Confidence            46899998888765543           5666654  5899999999999996 678999999999999853

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.4e-13  Score=90.44  Aligned_cols=123  Identities=17%  Similarity=0.222  Sum_probs=75.2

Q ss_pred             ccceeEEEEEec---CCcEEEEEecC---CCCeEECCCcccCCCCCHHHHHHHHHHHHhCCch-hhhhhccCCcccccCC
Q 030711            8 YRPNVGVCLINS---DSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-AEIIAEVPNWLTYDFP   80 (173)
Q Consensus         8 ~~~~v~~~i~~~---~~~vLl~~r~~---~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~-~~~~~~~~~~~~~~~~   80 (173)
                      .+..+.+++.+.   +++|||.+|..   ..|.|+||+|.++.||+..++|.|+..+|.+... ......+ ....+.|+
T Consensus        11 ~~~~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~-~~v~H~fs   89 (142)
T d1x51a1          11 EESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHL-GEVVHTFS   89 (142)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEEC-CCBCCBCS
T ss_pred             EEEEEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeee-ccceeccC
Confidence            333444455543   67999999975   4589999999999999998888777666655432 2111111 11233333


Q ss_pred             cccccccccccCCccccceEEEEEEEEccCccccccCCCCCCcccceeeEeCHHHHHHhhhhcCchHHHHHHHHHh
Q 030711           81 PAVKTKVNRLWGGEWHGQAQKWFLMKLTNDESEINLANGEADPEFAEWKWASPEEVVEQAVDYKRPTYEEVMRTFR  156 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~l~  156 (173)
                      +.                ...+.++.+.........      .+..+.+|++++++.++.++   ..++.+++.++
T Consensus        90 H~----------------~~~~~v~~~~~~~~~~~~------~~~~~~~W~~~~el~~~~lp---~~~~Kil~~~~  140 (142)
T d1x51a1          90 HI----------------KLTYQVYGLALEGQTPVT------TVPPGARWLTQEEFHTAAVS---TAMKKVFRVYQ  140 (142)
T ss_dssp             SC----------------EEEEEEEEEECSSCCCCC------CCCTTEEEEEHHHHHHSCCC---HHHHHHHHHHH
T ss_pred             Cc----------------ceEEEEEEEEEeCCCccc------ccCccCEEeeHHHccccCCC---HHHHHHHHHHh
Confidence            22                223333333322222111      36678999999999997663   67777776654