Citrus Sinensis ID: 030718

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDTDS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHcccccccccEEEEEEEEccccEEEEEcccccEEEEEEccccccEEEEEEccEEEEEccccccccccccEEEEEEEEEEcHHHHHHHHHcccccHHHHcccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHcccccccccEEEEEEEcccccEEEEEcccccEEEEEccHHHccEEEEEcccEEEEEcccccccccccccEEEEEEEEEcHHHHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccc
Coil and Loop (DISEMBL)
MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGsnlievldakdekslalfpakfqksmwikrgsfvvvdesgkekaikdgskVACIVTKVLFYEQVRALQkstewpeifkstnsddangslerqacnheendqsesddddglppleaninrmkpmelqtesesdsesdtds
Flexible Loop (DISEMBL)
mkggrknlkraaeeqsltlqdgqsiMQVVSLRGSNLIEVLDAKDEKSLALFPakfqksmwikRGSFVVVDesgkekaikdgskvaCIVTKVLFYEQVRAlqkstewpeifkstnsddangSLERQACNHeendqsesddddglpPLEANInrmkpmelqtesesdsesdtds
Low Complexity Region (SEG)
MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLERQACNHeendqsesddddGLPPLEANINRMKPMELQtesesdsesdtds
Disordered region (IsUnstruct)
************************IMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEI***************************************************************
Disordered Region (DISOPRED)
*****************TLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK**********************************LEANINRM*******************
Disordered Region (DISEMBL)
*****************TLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLERQA**************DGLPPLEANINRMKPM****************
Disordered Region (DISPRO)
******NLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK*******************************LPPLEANINRMKPM**Q*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDTDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q0V9J5	179	Probable RNA-binding prot	yes	no	0.709	0.681	0.361	1e-14
Q5HZM1	169	Probable RNA-binding prot	N/A	no	0.668	0.680	0.370	1e-14
Q58CY2	166	Probable RNA-binding prot	yes	no	0.633	0.656	0.356	2e-14
Q3THJ3	170	Probable RNA-binding prot	yes	no	0.668	0.676	0.347	4e-14
Q5RKI6	167	Probable RNA-binding prot	yes	no	0.668	0.688	0.347	7e-14
Q7SY07	172	Probable RNA-binding prot	yes	no	0.587	0.587	0.364	1e-13
Q5RD29	166	Probable RNA-binding prot	yes	no	0.668	0.692	0.352	2e-13
Q4R354	165	Probable RNA-binding prot	N/A	no	0.581	0.606	0.367	4e-13
Q8N9N8	165	Probable RNA-binding prot	yes	no	0.581	0.606	0.367	4e-13
Q8IQ13	159	Probable RNA-binding prot	yes	no	0.761	0.823	0.34	2e-12

>sp|Q0V9J5|EIF1A_XENTR Probable RNA-binding protein EIF1AD OS=Xenopus tropicalis GN=eif1ad PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 19/141 (13%)

Query: 23  QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGS 82
           Q I++V+   G+NL EV  ++ E+ LA  P KF+K++WIKRG F++VD       I +G 
Sbjct: 25  QRIVKVLGSPGNNLHEVETSEGERFLASMPTKFRKNIWIKRGDFLIVD------PIAEGE 78

Query: 83  KVACIVTKVLFYEQVRALQKSTEWPEIFKS------TNSDDANGSLERQACN----HEEN 132
           KV   +  +L+ +  R LQK   WPE F        T  ++ NG    +A +     E+ 
Sbjct: 79  KVKAEIAFILYKDHQRLLQKEGLWPEGFTQDKTGVVTKENENNGIQSTEALSTAQAKEQG 138

Query: 133 DQSESDDDDGLPPLEANINRM 153
           + SE+DDD GL     N NR+
Sbjct: 139 EDSETDDDSGLF---VNTNRV 156

May play a role into cellular response to oxidative stress. May decrease cell proliferation.
Xenopus tropicalis (taxid: 8364)

>sp|Q5HZM1|EIF1A_XENLA Probable RNA-binding protein EIF1AD OS=Xenopus laevis GN=eif1ad PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 12/127 (9%)

Query: 23  QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGS 82
           QSI++V+   G+NL EV  A+ E+ LA  P KF+K++WIKRG F++VD       I +G 
Sbjct: 25  QSIVKVLGSPGNNLHEVETAEGERFLASMPTKFRKNIWIKRGDFLIVD------PIVEGE 78

Query: 83  KVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSD------DANGSLERQACNHEENDQSE 136
           KV   +  +L+ +  R LQK   WPE F    +       +++G    +A    + + SE
Sbjct: 79  KVKAEIAFILYKDHQRLLQKEGLWPEGFTQDKTGLVAKEKESSGIQSTEAQAKPQGEDSE 138

Query: 137 SDDDDGL 143
           +DDD GL
Sbjct: 139 TDDDSGL 145

May play a role into cellular response to oxidative stress. May decrease cell proliferation.

Xenopus laevis (taxid: 8355)

>sp|Q58CY2|EIF1A_BOVIN Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 6/115 (5%)

Query: 5   RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
           RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct: 7   RKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query: 65  SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 119
            F++VD       I++G KV   ++ VL  + VR+LQK   WPE F      D N
Sbjct: 67  DFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNN 115

Plays a role into cellular response to oxidative stress. Decreases cell proliferation.

Bos taurus (taxid: 9913)

>sp|Q3THJ3|EIF1A_MOUSE Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=2 SV=2

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 6/121 (4%)

Query: 5   RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
           RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct: 7   RKHVVQEVLGEHMVPSDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query: 65  SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
            F++VD       I++G KV   ++ VL    VR+LQK   WPE F        N + E 
Sbjct: 67  DFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRES 120

Query: 125 Q 125
           Q
Sbjct: 121 Q 121

Plays a role into cellular response to oxidative stress. Decreases cell proliferation.

Mus musculus (taxid: 10090)

>sp|Q5RKI6|EIF1A_RAT Probable RNA-binding protein EIF1AD OS=Rattus norvegicus GN=Eif1ad PE=2 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 6/121 (4%)

Query: 5   RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
           RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct: 7   RKHVVQEVLGEHMVPSDQQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query: 65  SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
            F++VD       I++G KV   ++ VL    VR+LQK   WPE F        N + E 
Sbjct: 67  DFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNVNRES 120

Query: 125 Q 125
           Q
Sbjct: 121 Q 121

Plays a role into cellular response to oxidative stress. Decreases cell proliferation.

Rattus norvegicus (taxid: 10116)

>sp|Q7SY07|EIF1A_DANRE Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 6/107 (5%)

Query: 5   RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
           RK++ +   E  +T  + Q IM+V+   G+NL E +    E+ L   P KF+K++WIKRG
Sbjct: 7   RKHVVKEVLEDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRG 66

Query: 65  SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 111
            FV+VD       IK+G KV   ++ +L+ + ++ L+K   WPE F+
Sbjct: 67  DFVIVD------PIKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQ 107

May play a role into cellular response to oxidative stress. May decrease cell proliferation.

Danio rerio (taxid: 7955)

>sp|Q5RD29|EIF1A_PONAB Probable RNA-binding protein EIF1AD OS=Pongo abelii GN=EIF1AD PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 7/122 (5%)

Query: 5   RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
           RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct: 7   RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query: 65  SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
            F++VD       I++G KV   ++ VL  + VR+LQK   WPE F S  ++  N +  R
Sbjct: 67  DFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF-SEVAEKHNNNRNR 119

Query: 125 QA 126
           Q 
Sbjct: 120 QT 121

Plays a role into cellular response to oxidative stress. Decreases cell proliferation.

Pongo abelii (taxid: 9601)

>sp|Q4R354|EIF1A_MACFA Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 6/106 (5%)

Query: 5   RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
           RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct: 7   RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query: 65  SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110
            F++VD       I++G KV   ++ VL  + VR+LQK   WPE F
Sbjct: 67  DFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106

Plays a role into cellular response to oxidative stress. Decreases cell proliferation.

Macaca fascicularis (taxid: 9541)

>sp|Q8N9N8|EIF1A_HUMAN Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 6/106 (5%)

Query: 5   RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
           RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct: 7   RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query: 65  SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110
            F++VD       I++G KV   ++ VL  + VR+LQK   WPE F
Sbjct: 67  DFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106

Plays a role into cellular response to oxidative stress. Decreases cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q8IQ13|EIF1A_DROME Probable RNA-binding protein EIF1AD OS=Drosophila melanogaster GN=CG31957 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 19/150 (12%)

Query: 5   RKNLKRAAEEQSLTL-QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKR 63
           RK+L +   E    L  + Q I +V+S RG+NL EV +  DE  L   P KF+KSMW+KR
Sbjct: 11  RKHLMKEMMEDDYALPTETQQIARVISSRGNNLHEV-ETVDETFLVSMPNKFRKSMWVKR 69

Query: 64  GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 123
           G F++V+       I++G KV   + K+L  E ++   K+  WP+ F           ++
Sbjct: 70  GDFLLVE------PIEEGDKVKAEICKILTPEHIKEYTKAAIWPDKF-------TKKPVQ 116

Query: 124 RQACNHEENDQSESD-DDDGLPPLEANINR 152
            +A +  ++D   SD +DD LP     +NR
Sbjct: 117 EEATSQNKDD---SDFEDDLLPNTNRPVNR 143

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
359490714	192	PREDICTED: probable RNA-binding protein	0.988	0.885	0.645	4e-63
449457427	169	PREDICTED: probable RNA-binding protein	0.982	1.0	0.676	5e-60
449491671	169	PREDICTED: probable RNA-binding protein	0.982	1.0	0.670	2e-59
351723419	171	uncharacterized protein LOC100306612 [Gl	0.901	0.906	0.681	5e-55
302143926	144	unnamed protein product [Vitis vinifera]	0.703	0.840	0.826	1e-53
297824017	171	RNA binding protein [Arabidopsis lyrata	0.988	0.994	0.624	5e-53
15226743	171	OB-fold nucleic acid binding domain-cont	0.988	0.994	0.606	1e-51
357114396	164	PREDICTED: probable RNA-binding protein	0.889	0.932	0.641	3e-50
297823625	172	predicted protein [Arabidopsis lyrata su	1.0	1.0	0.616	9e-49
326531014	168	predicted protein [Hordeum vulgare subsp	0.970	0.994	0.591	2e-46

>gi|359490714|ref|XP_002276446.2| PREDICTED: probable RNA-binding protein EIF1AD-like [Vitis vinifera]

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 146/192 (76%), Gaps = 22/192 (11%)

Query: 1   MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
           MKGGRKNLKRAAEEQ+LTLQ+GQSIMQVVSLRG+NLIEV+DA+ E SLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEQTLTLQEGQSIMQVVSLRGTNLIEVMDARGENSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
           IK+GSFVVVDESG+EKA++ GSKVACIV++VLFYEQVR LQKS EWPEIFKST   D+NG
Sbjct: 61  IKKGSFVVVDESGREKAMESGSKVACIVSQVLFYEQVRVLQKSIEWPEIFKSTLLHDSNG 120

Query: 121 -SLERQACNHEENDQSESDDDD---------------------GLPPLEANINRMKPMEL 158
            SL       EE   +   D +                     GLPPLEAN+NR++P+EL
Sbjct: 121 TSLHSNTSQQEEFKSTARHDSNGNLHCSTSQQEEDESSSSDDDGLPPLEANMNRIRPLEL 180

Query: 159 QTESESDSESDT 170
           Q+ + SDS+SD+
Sbjct: 181 QSNAVSDSDSDS 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457427|ref|XP_004146450.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Cucumis sativus]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 140/170 (82%), Gaps = 1/170 (0%)

Query: 1   MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E    +L+DG SIMQVVS+RGSNLIEV+DA+ EKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
           IKRGSFVVVDESGK+ A++ GSKVACIV++VL++EQ+R LQKS EWPEIFK+    D N 
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNE 120

Query: 121 SLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDT 170
           +L+ Q  N    D+  S DDDGLPPLEAN NR KP+ LQ ++ES+S+SD+
Sbjct: 121 NLQAQN-NQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491671|ref|XP_004158969.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Cucumis sativus]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/170 (67%), Positives = 140/170 (82%), Gaps = 1/170 (0%)

Query: 1   MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
           MKGGRKNL+RA+E    +L+DG SIMQVVS+RGSNLIEV+DA+ EKSLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLQRASEHHIASLEDGHSIMQVVSIRGSNLIEVMDAQGEKSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
           IKRGSFVVVDESGK+ A++ GSKVACIV++VL++EQ+R LQKS EWPEIFK+    D + 
Sbjct: 61  IKRGSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRSE 120

Query: 121 SLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDT 170
           +L+ Q  N    D+  S DDDGLPPLEAN NR KP+ LQ ++ES+S+SD+
Sbjct: 121 NLQAQN-NQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723419|ref|NP_001237534.1| uncharacterized protein LOC100306612 [Glycine max] gi|255629065|gb|ACU14877.1| unknown [Glycine max]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 126/160 (78%), Gaps = 5/160 (3%)

Query: 1   MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
           M+GGRKNLKRA EE+ +TLQDGQ IMQVVSLRG+N+IEV+DA   K LALFPAK QKSMW
Sbjct: 3   MRGGRKNLKRATEEKHITLQDGQGIMQVVSLRGANIIEVMDASGNKLLALFPAKIQKSMW 62

Query: 61  IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
           IKRGSFVVVDESGKEKA++ GSKVAC+V++VLF +QVR L+KS EWPE FKS   DD   
Sbjct: 63  IKRGSFVVVDESGKEKALESGSKVACLVSQVLFSKQVRELEKSPEWPESFKSAMVDD--- 119

Query: 121 SLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQT 160
           S+E      E   + E  DDDGLPPLEAN NR++P ELQ 
Sbjct: 120 SIESTTSQQEH--ELEGSDDDGLPPLEANTNRIRPAELQA 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143926|emb|CBI23031.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/121 (82%), Positives = 113/121 (93%)

Query: 1   MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
           MKGGRKNLKRAAEEQ+LTLQ+GQSIMQVVSLRG+NLIEV+DA+ E SLALFPAKFQKSMW
Sbjct: 1   MKGGRKNLKRAAEEQTLTLQEGQSIMQVVSLRGTNLIEVMDARGENSLALFPAKFQKSMW 60

Query: 61  IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
           IK+GSFVVVDESG+EKA++ GSKVACIV++VLFYEQVR LQKS EWPEIFKST   D+NG
Sbjct: 61  IKKGSFVVVDESGREKAMESGSKVACIVSQVLFYEQVRVLQKSIEWPEIFKSTLLHDSNG 120

Query: 121 S 121
           +
Sbjct: 121 T 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824017|ref|XP_002879891.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata] gi|297325730|gb|EFH56150.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 108/173 (62%), Positives = 135/173 (78%), Gaps = 3/173 (1%)

Query: 1   MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
           M  GR+NLK+AA EQ  TL++ QSI QVVSLRGSN IE++DAK E SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASEQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
           I+RGSFVV+D +GKEKA + GSKV  IV KVLF+EQVR LQKS EWPEIFK T    A+ 
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTKPIPADK 120

Query: 121 SLERQACNHEENDQSE-SDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 172
           S   +   HE++ + + SDDDDG+PPLEAN NR++P  +Q ++E+DS SD+DS
Sbjct: 121 SSPIE--QHEDDGEIDSSDDDDGMPPLEANTNRLRPFGVQCDAETDSGSDSDS 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226743|ref|NP_181610.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gi|330254783|gb|AEC09877.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/173 (60%), Positives = 134/173 (77%), Gaps = 3/173 (1%)

Query: 1   MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
           M  GR+NLK+AA +Q  TL++ QSI QVVSLRGSN IE++DAK E SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
           I+RGSFVV+D +GKEKA + GSKV  IV KVLF+EQVR LQKS EWPEIFK T    A  
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEK 120

Query: 121 SLERQACNHEENDQSE-SDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 172
           S   +   HE++ + + SDDDDG+PPL+AN NR++P  ++ ++E+DS SD+DS
Sbjct: 121 SSPIE--QHEDDGEVDSSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDSDS 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114396|ref|XP_003558986.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Brachypodium distachyon]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 102/159 (64%), Positives = 129/159 (81%), Gaps = 6/159 (3%)

Query: 1   MKGGRKNLKRAAEE-QSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSM 59
           MK GRKNL+RA +E  ++TL DG+SIMQVV+LRGSNLIEVLD+K  KSLALFPAKFQKS 
Sbjct: 1   MKAGRKNLRRACQEGAAVTLADGESIMQVVTLRGSNLIEVLDSKGVKSLALFPAKFQKSF 60

Query: 60  WIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 119
           WIK G+FVVVD SG+++A++ GSK+AC+V++VLF++QVRAL+KS EWP IFKST++  A 
Sbjct: 61  WIKNGNFVVVDASGRDEALESGSKIACVVSRVLFHDQVRALEKSGEWPAIFKSTSNAWAT 120

Query: 120 GSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMEL 158
           G+  +     EE   SE DDDD LPPLEAN NR +P+E+
Sbjct: 121 GTTSKV----EEELNSEEDDDD-LPPLEANTNRNRPVEV 154

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823625|ref|XP_002879695.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325534|gb|EFH55954.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 129/172 (75%)

Query: 1   MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
           M  GR+NLK+AA EQ  TL++ QSI QVVSLRGSN IE++DAK E SLALFPAKF++SMW
Sbjct: 1   MNRGRRNLKQAASEQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query: 61  IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
           I+RGSFVV+D +GKEKA + GSKV  IV KVLF+EQVR LQKS EWPEIFK T    A+ 
Sbjct: 61  IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTKPIPADK 120

Query: 121 SLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 172
           S   +    +    S  DDDDG+PPLEAN NR++P  +Q  +E+DS SD+DS
Sbjct: 121 SSPIEQHEDDGEIDSSDDDDDGMPPLEANTNRLRPFGVQCTAETDSGSDSDS 172

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326531014|dbj|BAK04858.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/169 (59%), Positives = 132/169 (78%), Gaps = 2/169 (1%)

Query: 1   MKGGRKNLKRAAEE-QSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSM 59
           MK GRKNL+RA +E  ++TL +G+SIMQVV+LRGSNLIEV D +  KSLALFPAKFQKS 
Sbjct: 1   MKAGRKNLRRACQEGTAVTLAEGESIMQVVTLRGSNLIEVTDGEGVKSLALFPAKFQKSF 60

Query: 60  WIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 119
           WIK G+FVVVD SG+++A++ GSK+AC+V++VLF++QVRAL+KS EWP IFKST +  A 
Sbjct: 61  WIKNGNFVVVDASGRDEALESGSKIACVVSRVLFHDQVRALEKSGEWPAIFKSTPNGWAT 120

Query: 120 GSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSES 168
           G  E      EE   S+ D+DD +PPLEAN NR +P ++ +++E DS+S
Sbjct: 121 GP-EGTTSQVEEEQNSDEDEDDDMPPLEANTNRNRPFDVHSDTECDSDS 168

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2064864	171	AT2G40780 [Arabidopsis thalian	0.895	0.900	0.587	8.4e-42
DICTYBASE|DDB_G0292138	183	DDB_G0292138 "Probable RNA-bin	0.854	0.803	0.318	4.7e-16
UNIPROTKB|Q58CY2	166	EIF1AD "Probable RNA-binding p	0.662	0.686	0.355	6.9e-15
UNIPROTKB|J9NXA5	166	EIF1AD "Uncharacterized protei	0.662	0.686	0.347	3.8e-14
MGI|MGI:1917110	170	Eif1ad "eukaryotic translation	0.668	0.676	0.347	3.8e-14
RGD|1304686	167	Eif1ad "eukaryotic translation	0.668	0.688	0.347	3.8e-14
ZFIN|ZDB-GENE-040426-1199	172	eif1ad "eukaryotic translation	0.668	0.668	0.336	4.9e-14
UNIPROTKB|E9PRR8	146	EIF1AD "Probable RNA-binding p	0.668	0.787	0.338	7.9e-14
UNIPROTKB|Q8N9N8	165	EIF1AD "Probable RNA-binding p	0.668	0.696	0.338	7.9e-14
UNIPROTKB|E9PLI6	113	EIF1AD "Probable RNA-binding p	0.581	0.884	0.367	1.6e-13

TAIR|locus:2064864 AT2G40780 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 91/155 (58%), Positives = 111/155 (71%)

Query:     1 MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
             M  GR+NLK+AA +Q  TL++ QSI QVVSLRGSN IE++DAK E SLALFPAKF++SMW
Sbjct:     1 MNRGRRNLKQAASDQDFTLEECQSIAQVVSLRGSNQIEIMDAKGENSLALFPAKFRESMW 60

Query:    61 IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
             I+RGSFVV+D +GKEKA + GSKV  IV KVLF+EQVR LQKS EWPEIFK T    A  
Sbjct:    61 IRRGSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEK 120

Query:   121 SLERQACNHXXXXXXXXXXXXGLPPLEANINRMKP 155
             S   +  +             G+PPL+AN NR++P
Sbjct:   121 SSPIEQ-HEDDGEVDSSDDDDGMPPLQANTNRLRP 154

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006413 "translational initiation" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

DICTYBASE|DDB_G0292138 DDB_G0292138 "Probable RNA-binding protein EIF1AD" [Dictyostelium discoideum (taxid:44689)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 49/154 (31%), Positives = 78/154 (50%)

Query:     1 MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMW 60
             M   RK++   +   SL L++ Q+I++V+ +RG N++EV        LA+ P+KF+  +W
Sbjct:     1 MSHARKHVTNQSLNSSLKLENDQNIVKVIDMRGGNVVEVQYPNGSTVLAIIPSKFKNILW 60

Query:    61 IKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 120
             IK+G++ ++D   KE      S+V C V  +L  E V+ L KS +WP+ F   + +D N 
Sbjct:    61 IKKGNYAIID---KEDESSKSSQVKCSVVHILSKENVKGLVKSRDWPKEF---DLEDKNQ 114

Query:   121 SLERQACNHXXXXXXXXXXXXGLPPLEANINRMK 154
               + Q                GL  L  N NR K
Sbjct:   115 RQQPQK-PLLLTAPTSDDEDGGLSDLGVNPNRKK 147

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q58CY2 EIF1AD "Probable RNA-binding protein EIF1AD" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 43/121 (35%), Positives = 68/121 (56%)

Query:     5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
             RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct:     7 RKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query:    65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
              F++VD       I++G KV   ++ VL  + VR+LQK   WPE F      D N    R
Sbjct:    67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKD-NNDRNR 119

Query:   125 Q 125
             Q
Sbjct:   120 Q 120

GO:0005634 "nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|J9NXA5 EIF1AD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 42/121 (34%), Positives = 70/121 (57%)

Query:     5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
             RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct:     7 RKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query:    65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
              F++VD       I++G KV   ++ VL  + VR+LQK   WPE F    ++  N +  R
Sbjct:    67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGLWPEAFSEV-AEKHNNNRNR 119

Query:   125 Q 125
             Q
Sbjct:   120 Q 120

GO:0003743 "translation initiation factor activity" evidence=IEA

MGI|MGI:1917110 Eif1ad "eukaryotic translation initiation factor 1A domain containing" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 42/121 (34%), Positives = 67/121 (55%)

Query:     5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
             RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct:     7 RKHVVQEVLGEHMVPSDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query:    65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
              F++VD       I++G KV   ++ VL    VR+LQK   WPE F        N + E 
Sbjct:    67 DFLIVDP------IEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNMNRES 120

Query:   125 Q 125
             Q
Sbjct:   121 Q 121

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

RGD|1304686 Eif1ad "eukaryotic translation initiation factor 1A domain containing" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 42/121 (34%), Positives = 67/121 (55%)

Query:     5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
             RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct:     7 RKHVVQEVLGEHMVPSDQQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query:    65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
              F++VD       I++G KV   ++ VL    VR+LQK   WPE F        N + E 
Sbjct:    67 DFLIVDP------IEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNNVNRES 120

Query:   125 Q 125
             Q
Sbjct:   121 Q 121

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1199 eif1ad "eukaryotic translation initiation factor 1A domain containing" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 41/122 (33%), Positives = 69/122 (56%)

Query:     5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
             RK++ +   E  +T  + Q IM+V+   G+NL E +    E+ L   P KF+K++WIKRG
Sbjct:     7 RKHVVKEVLEDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRG 66

Query:    65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTN-SDDANGSLE 123
              FV+VD       IK+G KV   ++ +L+ + ++ L+K   WPE F+    S + N   +
Sbjct:    67 DFVIVDP------IKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQEDRTSGERNEGTQ 120

Query:   124 RQ 125
             ++
Sbjct:   121 KE 122

GO:0006413 "translational initiation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E9PRR8 EIF1AD "Probable RNA-binding protein EIF1AD" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 41/121 (33%), Positives = 68/121 (56%)

Query:     5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
             RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct:     7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query:    65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
              F++VD       I++G KV   ++ VL  + VR+LQK   WPE F        N + + 
Sbjct:    67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQT 120

Query:   125 Q 125
             Q
Sbjct:   121 Q 121

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q8N9N8 EIF1AD "Probable RNA-binding protein EIF1AD" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 41/121 (33%), Positives = 68/121 (56%)

Query:     5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
             RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct:     7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query:    65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLER 124
              F++VD       I++G KV   ++ VL  + VR+LQK   WPE F        N + + 
Sbjct:    67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNRNRQT 120

Query:   125 Q 125
             Q
Sbjct:   121 Q 121

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E9PLI6 EIF1AD "Probable RNA-binding protein EIF1AD" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 39/106 (36%), Positives = 64/106 (60%)

Query:     5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRG 64
             RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG
Sbjct:     7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRG 66

Query:    65 SFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 110
              F++VD       I++G KV   ++ VL  + VR+LQK   WPE F
Sbjct:    67 DFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__2196__AT2G40780.1 annotation not avaliable (171 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
smart00652	83	smart00652, eIF1a, eukaryotic translation initiati	5e-22
cd05792	78	cd05792, S1_eIF1AD_like, S1_eIF1AD_like: eukaryoti	5e-18
pfam01176	65	pfam01176, eIF-1a, Translation initiation factor 1	3e-14
cd04456	78	cd04456, S1_IF1A_like, S1_IF1A_like: Translation i	2e-09

>gnl|CDD|128900 smart00652, eIF1a, eukaryotic translation initiation factor 1A

 Score = 84.2 bits (209), Expect = 5e-22
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 18  TLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVD--ESGKE 75
             +DGQ I QVV + G+  +EV+ A  ++ LA  P K +K +WI+RG  V+VD  +    
Sbjct: 1   FKEDGQEIAQVVKMLGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLVDPWDFQDV 60

Query: 76  KAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 107
           KA      +    TK    ++VR L+K  E P
Sbjct: 61  KA-----DIIYKYTK----DEVRWLKKEGELP 83

Length = 83

>gnl|CDD|240218 cd05792, S1_eIF1AD_like, S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain

 Score = 73.6 bits (181), Expect = 5e-18
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 6/84 (7%)

Query: 23  QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGS 82
           Q I++V+  +G+NL EV      + L   P KF+K++WIKRG FV+V+       I++G 
Sbjct: 1   QQIVRVLGSKGNNLHEVETPNGSRYLVSMPTKFRKNIWIKRGDFVLVE------PIEEGD 54

Query: 83  KVACIVTKVLFYEQVRALQKSTEW 106
           KV   + K+L  + V+ +++   W
Sbjct: 55  KVKAEIVKILTRDHVKYIKEEGLW 78

eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. Length = 78

>gnl|CDD|216345 pfam01176, eIF-1a, Translation initiation factor 1A / IF-1

 Score = 63.7 bits (156), Expect = 3e-14
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 21 DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEK 76
          +G+ I QV  + G+   EV      + LA  P K +K +WI RG FV+V+ S  +K
Sbjct: 2  EGEMIGQVTEMLGNGRFEVELEDGHERLAHIPGKRRKRIWILRGDFVLVELSPYDK 57

This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. Length = 65

>gnl|CDD|239903 cd04456, S1_IF1A_like, S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 6/84 (7%)

Query: 23  QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGS 82
           Q I++V+ + G+N  EV  A  ++ L   P K +K++WIKRG F++VD       I++G 
Sbjct: 1   QQIVRVLRMLGNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIVD------PIEEGE 54

Query: 83  KVACIVTKVLFYEQVRALQKSTEW 106
            V   +  V   + VR+L+K    
Sbjct: 55  DVKADIIFVYCKDHVRSLKKEGFL 78

IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
KOG2925	167	consensus Predicted translation initiation factor	100.0
cd05792	78	S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translat	100.0
smart00652	83	eIF1a eukaryotic translation initiation factor 1A.	100.0
PLN00208	145	translation initiation factor (eIF); Provisional	100.0
TIGR00523	99	eIF-1A eukaryotic/archaeal initiation factor 1A. R	100.0
cd04456	78	S1_IF1A_like S1_IF1A_like: Translation initiation	100.0
PTZ00329	155	eukaryotic translation initiation factor 1A; Provi	100.0
PRK04012	100	translation initiation factor IF-1A; Provisional	99.97
cd05793	77	S1_IF1A S1_IF1A: Translation initiation factor IF1	99.97
PF01176	65	eIF-1a: Translation initiation factor 1A / IF-1; I	99.92
KOG3403	145	consensus Translation initiation factor 1A (eIF-1A	99.9
COG0361	75	InfA Translation initiation factor 1 (IF-1) [Trans	99.84
TIGR00008	68	infA translation initiation factor IF-1. This fami	99.68
PRK12442	87	translation initiation factor IF-1; Reviewed	99.55
CHL00010	78	infA translation initiation factor 1	99.46
PRK00276	72	infA translation initiation factor IF-1; Validated	99.42
cd04451	64	S1_IF1 S1_IF1: Translation Initiation Factor IF1,	99.01
cd04466	68	S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (	97.75
PRK12288	347	GTPase RsgA; Reviewed	95.05
PRK00098	298	GTPase RsgA; Reviewed	94.73
PRK12289	352	GTPase RsgA; Reviewed	93.58
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	93.14
PRK01889	356	GTPase RsgA; Reviewed	87.28
PF01455	68	HupF_HypC: HupF/HypC family; InterPro: IPR001109 T	87.17
cd04721	130	BAH_plant_1 BAH, or Bromo Adjacent Homology domain	86.13
PRK10413	82	hydrogenase 2 accessory protein HypG; Provisional	84.56
TIGR00074	76	hypC_hupF hydrogenase assembly chaperone HypC/HupF	81.75

>KOG2925 consensus Predicted translation initiation factor related to eIF-1A [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.3e-46  Score=295.17  Aligned_cols=165  Identities=48%  Similarity=0.756  Sum_probs=129.7

Q ss_pred             CCCcchhHHHHHhhccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcC
Q 030718            1 MKGGRKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKD   80 (172)
Q Consensus         1 M~~~Rk~~~~~~~e~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~   80 (172)
                      |..+||++.+++.++..+|.+.|+||||++++|||||+|++++|+.+||+||+||||+||||||+||||+|..+   .+.
T Consensus         1 ~atkkry~~q~v~de~~~le~~q~IaqVvqlrGsnlheV~danGq~~lvsmP~KfRksiWiRRg~FvvVdpiee---~~~   77 (167)
T KOG2925|consen    1 MATKKRYLKQAVSDEDFTLEECQSIAQVVQLRGSNLHEVMDANGQNSLVSMPAKFRKSIWIRRGSFVVVDPIEE---EKS   77 (167)
T ss_pred             CccchhhhcccccCCCcchhhhhhHHHHHhcCCcchhhhhhcCCceeeeeCCHhhhhceEEeeCCEEEEccccc---ccc
Confidence            67889999999998899999999999999999999999999999999999999999999999999999999654   345


Q ss_pred             CCeeeEEEEEEeCHHHHHHHHhCCCCchhhhccCCCCCCchhh-hhhccCcccCC-CCCCCCCCCCCcccCcCCCCCccc
Q 030718           81 GSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE-RQACNHEENDQ-SESDDDDGLPPLEANINRMKPMEL  158 (172)
Q Consensus        81 ~~KvkgeIv~vl~~~qvk~Lrk~g~WP~~F~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~ddD~l~~L~~N~NR~~~~~~  158 (172)
                      |+||+|+|+|||..+||+.|+|.|+||+.|...   +.+.... .+-+-+...+. ++++++|+.||||+||||.++...
T Consensus        78 g~KVkgeI~yVl~~d~vr~lqk~g~WPe~F~d~---alk~n~~~~t~e~~~dd~ls~sese~ddds~l~~ntnr~~~~~~  154 (167)
T KOG2925|consen   78 GSKVKGEICYVLFFDQVRLLQKSGEWPEIFKDT---ALKPNEKSSTIEQHEDDGLSDSESEDDDDSPLQANTNRLRPFGV  154 (167)
T ss_pred             CCccceEEEEEEccHHHHHHHHcCCcchhhhhc---ccccccccCCcccccccCCCCcccccccCCchhccccccCcccc
Confidence            999999999999999999999999999999874   1110000 00011111111 222344556999999999997655


Q ss_pred             cccCccCccCCCC
Q 030718          159 QTESESDSESDTD  171 (172)
Q Consensus       159 ~~~s~~~~~~~~~  171 (172)
                      -++++.++.+|+|
T Consensus       155 eee~e~~~~a~s~  167 (167)
T KOG2925|consen  155 EEEAETDSGADSD  167 (167)
T ss_pred             cccCcccccCCCC
Confidence            5555555444543

>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain

Probab=100.00  E-value=4.2e-38  Score=226.62  Aligned_cols=78  Identities=36%  Similarity=0.683  Sum_probs=75.7

Q ss_pred             cEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHh
Q 030718           23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQK  102 (172)
Q Consensus        23 q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk  102 (172)
                      |+||+|++++|||+|+|+|+||+++||+||+||||+|||||||||||+||++      ++|++|+|+|||+++||++|++
T Consensus         1 q~i~rV~~~~G~n~~~V~~~dG~~~l~~iP~KfRk~iWIkrGd~VlV~p~~~------~~kvkgeIv~i~~~~qvk~L~k   74 (78)
T cd05792           1 QQIVRVLGSKGNNLHEVETPNGSRYLVSMPTKFRKNIWIKRGDFVLVEPIEE------GDKVKAEIVKILTRDHVKYIKE   74 (78)
T ss_pred             CeEEEEEEcCCCcEEEEEcCCCCEEEEEechhhcccEEEEeCCEEEEEeccc------CCceEEEEEEEECHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999975      5789999999999999999999


Q ss_pred             CCCC
Q 030718          103 STEW  106 (172)
Q Consensus       103 ~g~W  106 (172)
                      +|+|
T Consensus        75 ~g~W   78 (78)
T cd05792          75 EGLW   78 (78)
T ss_pred             cCCC
Confidence            9999

eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.

>smart00652 eIF1a eukaryotic translation initiation factor 1A

Probab=100.00  E-value=4.8e-35  Score=212.61  Aligned_cols=83  Identities=36%  Similarity=0.530  Sum_probs=79.7

Q ss_pred             CCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHH
Q 030718           18 TLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQV   97 (172)
Q Consensus        18 ~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qv   97 (172)
                      .|++||+||+|++++|||+|+|+|+||.++||+|||||||+|||++||||||++|++       ++++|+|+|+|+++||
T Consensus         1 ~p~e~q~~g~V~~~lG~~~~~V~~~dG~~~la~ipgK~Rk~iwI~~GD~VlVe~~~~-------~~~kg~Iv~r~~~~~v   73 (83)
T smart00652        1 FKEDGQEIAQVVKMLGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLVDPWDF-------QDVKADIIYKYTKDEV   73 (83)
T ss_pred             CCCCCcEEEEEEEEcCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEecCC-------CCCEEEEEEEeCHHHH
Confidence            478999999999999999999999999999999999999999999999999999975       2589999999999999


Q ss_pred             HHHHhCCCCc
Q 030718           98 RALQKSTEWP  107 (172)
Q Consensus        98 k~Lrk~g~WP  107 (172)
                      |+|+++|+||
T Consensus        74 k~L~k~g~wp   83 (83)
T smart00652       74 RWLKKEGELP   83 (83)
T ss_pred             HHHHHcCCCC
Confidence            9999999999

>PLN00208 translation initiation factor (eIF); Provisional

Probab=100.00  E-value=3e-34  Score=227.16  Aligned_cols=92  Identities=24%  Similarity=0.319  Sum_probs=87.7

Q ss_pred             hccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeC
Q 030718           14 EQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLF   93 (172)
Q Consensus        14 e~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~   93 (172)
                      -+++.|++||+||+|++++|||+|+|+|+||.++||+|||||||+|||++||+|||++|++       .++||+|+|+|+
T Consensus        24 ~el~~p~egq~~g~V~~~lGn~~~~V~c~dG~~rLa~IpGKmRKrIWI~~GD~VlVel~~~-------d~~KgdIv~ry~   96 (145)
T PLN00208         24 RELIFKEDGQEYAQVLRMLGNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDIILVGLRDY-------QDDKADVILKYM   96 (145)
T ss_pred             eecccCCCCcEEEEEEEEcCCCEEEEEECCCCEEEEEEeccceeeEEecCCCEEEEEccCC-------CCCEEEEEEEcC
Confidence            3489999999999999999999999999999999999999999999999999999999986       357899999999


Q ss_pred             HHHHHHHHhCCCCchhhhc
Q 030718           94 YEQVRALQKSTEWPEIFKS  112 (172)
Q Consensus        94 ~~qvk~Lrk~g~WP~~F~~  112 (172)
                      ++||++|++.|+||+.|..
T Consensus        97 ~dqvr~Lkk~G~~P~~f~~  115 (145)
T PLN00208         97 PDEARLLKAYGELPENTRL  115 (145)
T ss_pred             HHHHHHHHHcCCCCcceee
Confidence            9999999999999999977

>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A

Probab=100.00  E-value=3.6e-33  Score=208.88  Aligned_cols=87  Identities=20%  Similarity=0.287  Sum_probs=81.4

Q ss_pred             cCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718           16 SLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE   95 (172)
Q Consensus        16 ~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~   95 (172)
                      +|.++++|+||+|++++|||+|+|+|+||.++||+|||||||+|||++||||||+||++      ..++||+|+|+|+++
T Consensus        13 ~p~~~e~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~Rk~iwI~~GD~VlVsp~d~------~~~~kg~Iv~r~~~~   86 (99)
T TIGR00523        13 LPRKEEGEILGVIEQMLGAGRVKVRCLDGKTRLGRIPGKLKKRIWIREGDVVIVKPWEF------QGDDKCDIVWRYTKT   86 (99)
T ss_pred             CCCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEEEEccC------CCCccEEEEEEcCHH
Confidence            55667999999999999999999999999999999999999999999999999999985      235789999999999


Q ss_pred             HHHHHHhCCCCch
Q 030718           96 QVRALQKSTEWPE  108 (172)
Q Consensus        96 qvk~Lrk~g~WP~  108 (172)
                      ||++|+++|+||+
T Consensus        87 qv~~L~~~g~~p~   99 (99)
T TIGR00523        87 QVEWLKRKGYLKE   99 (99)
T ss_pred             HHHHHHHcCCCCC
Confidence            9999999999994

Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C

>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain

Probab=100.00  E-value=6.6e-33  Score=199.39  Aligned_cols=78  Identities=35%  Similarity=0.554  Sum_probs=75.0

Q ss_pred             cEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHh
Q 030718           23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQK  102 (172)
Q Consensus        23 q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk  102 (172)
                      |+||+|++++|||+|+|+|+||.++||+|||||||+|||++||||||+||++      ++++||+|+|+|+++||++|++
T Consensus         1 q~i~~V~~~lG~~~~~V~~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV~~~~~------~~~~kg~Iv~r~~~~~vk~L~k   74 (78)
T cd04456           1 QQIVRVLRMLGNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIVDPIEE------GEDVKADIIFVYCKDHVRSLKK   74 (78)
T ss_pred             CeEEEEEEECCCCEEEEEECCCCEEEEEEchhhccCEEEcCCCEEEEEeccc------CCCceEEEEEEeCHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999974      4578999999999999999999


Q ss_pred             CCCC
Q 030718          103 STEW  106 (172)
Q Consensus       103 ~g~W  106 (172)
                      +|+|
T Consensus        75 ~g~w   78 (78)
T cd04456          75 EGFL   78 (78)
T ss_pred             cCcC
Confidence            9998

IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.

>PTZ00329 eukaryotic translation initiation factor 1A; Provisional

Probab=100.00  E-value=4.8e-33  Score=222.30  Aligned_cols=91  Identities=24%  Similarity=0.321  Sum_probs=87.1

Q ss_pred             ccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCH
Q 030718           15 QSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFY   94 (172)
Q Consensus        15 ~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~   94 (172)
                      +++.|++||+||+|++++||++|+|+|+||.++||+|||||||+|||++||+|||++|++       .++||+|+|+|++
T Consensus        25 el~~~eegq~~g~V~~~LGn~~f~V~c~dG~~rLa~I~GKmRK~IWI~~GD~VlVel~~y-------d~~KgdIi~Ry~~   97 (155)
T PTZ00329         25 ELVFKEEGQEYAQVLRMLGNGRLEAYCFDGVKRLCHIRGKMRKRVWINIGDIILVSLRDF-------QDSKADVILKYTP   97 (155)
T ss_pred             eeccCCCCcEEEEEEEEcCCCEEEEEECCCCEEEEEeeccceeeEEecCCCEEEEeccCC-------CCCEEEEEEEcCH
Confidence            388999999999999999999999999999999999999999999999999999999986       2478999999999


Q ss_pred             HHHHHHHhCCCCchhhhc
Q 030718           95 EQVRALQKSTEWPEIFKS  112 (172)
Q Consensus        95 ~qvk~Lrk~g~WP~~F~~  112 (172)
                      +||++|++.|+||+.|..
T Consensus        98 devr~Lk~~g~~P~~~~~  115 (155)
T PTZ00329         98 DEARALKQHGELPETAKI  115 (155)
T ss_pred             HHHHHHHHcCCCCcceee
Confidence            999999999999999977

>PRK04012 translation initiation factor IF-1A; Provisional

Probab=99.97  E-value=7.2e-32  Score=202.23  Aligned_cols=87  Identities=21%  Similarity=0.254  Sum_probs=82.5

Q ss_pred             ccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCH
Q 030718           15 QSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFY   94 (172)
Q Consensus        15 ~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~   94 (172)
                      .+++|++||++|+|++++|||+|+|+|+||.++||+|||||||+|||++||||+|++|++     +  +.||+|+|+|++
T Consensus        14 ~~~~p~e~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~~-----~--~~kg~Iv~r~~~   86 (100)
T PRK04012         14 RLPMPEEGEVFGVVEQMLGANRVRVRCMDGVERMGRIPGKMKKRMWIREGDVVIVAPWDF-----Q--DEKADIIWRYTK   86 (100)
T ss_pred             EccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEEEeccc-----C--CCEEEEEEEcCH
Confidence            488999999999999999999999999999999999999999999999999999999985     2  468999999999


Q ss_pred             HHHHHHHhCCCCch
Q 030718           95 EQVRALQKSTEWPE  108 (172)
Q Consensus        95 ~qvk~Lrk~g~WP~  108 (172)
                      +||++|+++|++|+
T Consensus        87 ~qv~~L~~~g~~~~  100 (100)
T PRK04012         87 PQVDWLRRKGYISE  100 (100)
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999999984

>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain

Probab=99.97  E-value=4.7e-30  Score=184.13  Aligned_cols=77  Identities=23%  Similarity=0.280  Sum_probs=73.1

Q ss_pred             cEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHh
Q 030718           23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQK  102 (172)
Q Consensus        23 q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk  102 (172)
                      |++|+|++++|||+|+|+|+||.++||+|||||||+|||++||||+|++|++       +++||+|+|+|+++||++|++
T Consensus         1 e~~g~V~~~~g~~~~~V~~~~g~~~la~i~gK~rk~iwI~~GD~V~Ve~~~~-------d~~kg~Iv~r~~~~~v~~L~~   73 (77)
T cd05793           1 EEYGQVEKMLGNGRLEVRCFDGKKRLCRIRGKMRKRVWINEGDIVLVAPWDF-------QDDKADIIYKYTPDEVRWLKR   73 (77)
T ss_pred             CEEEEEEEEcCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEeccc-------cCCEEEEEEEcCHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999975       357899999999999999999


Q ss_pred             CCCC
Q 030718          103 STEW  106 (172)
Q Consensus       103 ~g~W  106 (172)
                      +|++
T Consensus        74 ~g~i   77 (77)
T cd05793          74 KGEL   77 (77)
T ss_pred             cCcC
Confidence            9874

S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.

>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins

Probab=99.92  E-value=8.1e-26  Score=156.73  Aligned_cols=65  Identities=40%  Similarity=0.621  Sum_probs=57.4

Q ss_pred             CCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEE
Q 030718           20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKV   91 (172)
Q Consensus        20 ~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~v   91 (172)
                      +++|+||+|++++|||+|+|+|+||.++||+||||||++|||++||||||++|++       ++++|+|+|+
T Consensus         1 ee~e~~~~V~~~lG~~~~~V~~~dg~~~l~~i~gK~r~~iwI~~GD~V~V~~~~~-------d~~kG~Ii~r   65 (65)
T PF01176_consen    1 EEGEVIGRVTEMLGNNLFEVECEDGEERLARIPGKFRKRIWIKRGDFVLVEPSPY-------DKVKGRIIYR   65 (65)
T ss_dssp             STTEEEEEEEEEESSSEEEEEETTSEEEEEEE-HHHHTCC---TTEEEEEEESTT-------CTTEEEEEEE
T ss_pred             CCcEEEEEEEEECCCCEEEEEeCCCCEEEEEeccceeeeEecCCCCEEEEEeccc-------CCCeEEEEEC
Confidence            5799999999999999999999999999999999999999999999999999975       2578999986

It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.

>KOG3403 consensus Translation initiation factor 1A (eIF-1A) [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.8e-24  Score=167.81  Aligned_cols=91  Identities=23%  Similarity=0.314  Sum_probs=85.5

Q ss_pred             ccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCH
Q 030718           15 QSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFY   94 (172)
Q Consensus        15 ~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~   94 (172)
                      ++...++||+|+||++|+||.+++|.|.||..|||+|.||+||+|||..||+|||...++     ++  -+|+|+..|++
T Consensus        25 eLvfkEegqeYaQv~kmLGnGr~e~~CfDGvkR~~hiRGklrkkVwi~~GDIiLv~lRD~-----qd--~kaDvilKY~~   97 (145)
T KOG3403|consen   25 ELVFKEEGQEYAQVIKMLGNGRLEASCFDGVKRLCHIRGKLRKKVWINQGDIILVGLRDY-----QD--DKADVILKYMP   97 (145)
T ss_pred             heeehhcchhHHHHHhhhcCCcEEEEEecchhhhhhhhccceeeEeecCCCEEEEeeecc-----cc--cccceehhhCh
Confidence            377888999999999999999999999999999999999999999999999999999986     34  36999999999


Q ss_pred             HHHHHHHhCCCCchhhhc
Q 030718           95 EQVRALQKSTEWPEIFKS  112 (172)
Q Consensus        95 ~qvk~Lrk~g~WP~~F~~  112 (172)
                      ++++.|+..|.+|+.|..
T Consensus        98 dEar~LK~~Gelpe~~k~  115 (145)
T KOG3403|consen   98 DEARILKAYGELPENAKI  115 (145)
T ss_pred             HHHHHHHhcCcCCccccc
Confidence            999999999999998876

>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=6.6e-21  Score=136.39  Aligned_cols=72  Identities=15%  Similarity=0.092  Sum_probs=66.4

Q ss_pred             CCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHH
Q 030718           18 TLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQ   96 (172)
Q Consensus        18 ~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~q   96 (172)
                      .|+++++.++|++++||++|.|+|.||..++|+||||+|+ +|||..||.|+|++|++|     .  -+|.|+|+|+++|
T Consensus         3 ~~d~~e~~g~V~e~L~~~~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve~~~~d-----~--~kg~I~~Ry~~~~   75 (75)
T COG0361           3 KPDEIEMEGTVIEMLPNGRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELSPYD-----L--TKGRIVYRYKKDE   75 (75)
T ss_pred             cccccEEEEEEEEecCCCEEEEEecCCcEEEEEccCcchheeEEeCCCCEEEEEecccc-----c--ccccEEEEecCCC
Confidence            4578999999999999999999999999999999999999 999999999999999872     4  3699999999864

>TIGR00008 infA translation initiation factor IF-1

Probab=99.68  E-value=2.1e-16  Score=111.37  Aligned_cols=62  Identities=18%  Similarity=0.051  Sum_probs=57.0

Q ss_pred             cEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEE
Q 030718           23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKV   91 (172)
Q Consensus        23 q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~v   91 (172)
                      ++.++|++++||..|.|+|.||.++||+||||||+ +|||..||.|+|++|+++     .  -||.|+|+
T Consensus         6 e~~G~V~e~L~~~~f~V~l~ng~~vla~i~GKmr~~rI~I~~GD~V~Ve~spyd-----~--tkgrIi~R   68 (68)
T TIGR00008         6 EMEGKVTESLPNAMFRVELENGHEVLAHISGKIRMHYIRILPGDKVKVELSPYD-----L--TRGRITYR   68 (68)
T ss_pred             EEEEEEEEECCCCEEEEEECCCCEEEEEecCcchhccEEECCCCEEEEEECccc-----C--CcEeEEeC
Confidence            57899999999999999999999999999999995 999999999999999873     3  36999985

This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).

>PRK12442 translation initiation factor IF-1; Reviewed

Probab=99.55  E-value=3e-14  Score=104.57  Aligned_cols=64  Identities=13%  Similarity=-0.056  Sum_probs=59.6

Q ss_pred             cEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeC
Q 030718           23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLF   93 (172)
Q Consensus        23 q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~   93 (172)
                      ++.+.|+++++|..|.|.|.+|.++||+|+||||+ +|||..||.|+|++|+++     .  -+|.|+|+|.
T Consensus         8 e~~G~V~e~Lp~~~frV~LenG~~vla~isGKmR~~rIrIl~GD~V~VE~spYD-----l--tkGRIiyR~~   72 (87)
T PRK12442          8 ELDGIVDEVLPDSRFRVTLENGVEVGAYASGRMRKHRIRILAGDRVTLELSPYD-----L--TKGRINFRHK   72 (87)
T ss_pred             EEEEEEEEECCCCEEEEEeCCCCEEEEEeccceeeeeEEecCCCEEEEEECccc-----C--CceeEEEEec
Confidence            57899999999999999999999999999999999 999999999999999873     3  3699999997

>CHL00010 infA translation initiation factor 1

Probab=99.46  E-value=3.1e-13  Score=97.01  Aligned_cols=66  Identities=18%  Similarity=0.062  Sum_probs=58.9

Q ss_pred             cEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718           23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE   95 (172)
Q Consensus        23 q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~   95 (172)
                      ++.++|++.+|++.|.|.|.+|..++|+++||||+ ++|+..||+|.|++|.+     ++  -+|.|+|+|...
T Consensus         8 ~~~G~Vik~lg~~~y~V~~~~g~~~~c~~rGklr~~~i~~~vGD~V~ve~~~~-----~~--~~g~Ii~r~~~~   74 (78)
T CHL00010          8 EMEGLVTESLPNGMFRVRLDNGCQVLGYISGKIRRNSIRILPGDRVKVELSPY-----DL--TKGRIIYRLRNK   74 (78)
T ss_pred             EEEEEEEEEcCCCEEEEEeCCCCEEEEEeccceecCCcccCCCCEEEEEEccc-----CC--CeEEEEEEecCC
Confidence            46799999999999999999999999999999997 69999999999999864     23  369999999753

>PRK00276 infA translation initiation factor IF-1; Validated

Probab=99.42  E-value=1.2e-12  Score=92.42  Aligned_cols=64  Identities=22%  Similarity=0.092  Sum_probs=57.1

Q ss_pred             cEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeC
Q 030718           23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLF   93 (172)
Q Consensus        23 q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~   93 (172)
                      +..++|++.+|++.|.|.|.+|..++|+++||||+ ++|+..||+|+|++|.+     +++  +|.|+|+|.
T Consensus         8 ~~~G~Vi~~~~~~~y~V~~~~g~~~~c~~~Gklr~~~i~i~vGD~V~ve~~~~-----~~~--~g~Iv~r~~   72 (72)
T PRK00276          8 EMEGTVVEALPNAMFRVELENGHEVLAHISGKMRKNYIRILPGDKVTVELSPY-----DLT--KGRITYRHK   72 (72)
T ss_pred             EEEEEEEEEcCCCEEEEEeCCCCEEEEEEccceeeCCcccCCCCEEEEEEccc-----CCC--eEEEEEEeC
Confidence            56799999999999999999999999999999994 89999999999999864     233  599999983

>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain

Probab=99.01  E-value=1.6e-09  Score=74.24  Aligned_cols=61  Identities=18%  Similarity=0.053  Sum_probs=52.6

Q ss_pred             EEEEEEeecCCceEEEEeCCCCEEEEEeecccc-ceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEE
Q 030718           24 SIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQ-KSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKV   91 (172)
Q Consensus        24 ~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfR-K~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~v   91 (172)
                      +-++|++..|++.|.|.|.+|..++|++++||| +++|+..||+|+++++.+     ++.  +|.|+|+
T Consensus         3 ~~G~Vi~~~~g~~~~V~~~~g~~~~c~~rGklr~~~~~~~vGD~V~~~~~~~-----~~~--~g~I~~~   64 (64)
T cd04451           3 MEGVVTEALPNAMFRVELENGHEVLAHISGKMRMNYIRILPGDRVKVELSPY-----DLT--KGRIVYR   64 (64)
T ss_pred             EEEEEEEEeCCCEEEEEeCCCCEEEEEECceeecCCcccCCCCEEEEEEeec-----CCC--EEEEEEC
Confidence            458999999989999999999999999999999 489999999999998743     232  5899884

IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th

>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain

Probab=97.75  E-value=0.00015  Score=48.98  Aligned_cols=60  Identities=17%  Similarity=0.162  Sum_probs=47.7

Q ss_pred             EEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718           26 MQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE   95 (172)
Q Consensus        26 ~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~   95 (172)
                      ++|++..| +.|.|.+.+|..++|.++++|++ ..++-.||+|++++++      .+   .+-|+.+|-..
T Consensus         3 grVv~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~VGD~V~~~~~~------~~---~~~I~~vl~R~   63 (68)
T cd04466           3 GLIIKAIG-GFYYVETEDGKIYECRLRGKFRKDKNPPAVGDRVEFEPED------DG---EGVIEEILPRK   63 (68)
T ss_pred             EEEEEEEC-CEEEEEeCCCeEEEEEEccccccCCCCCCCCcEEEEEECC------CC---cEEEEEEeccc
Confidence            68888887 67889998788999999999984 5789999999998742      12   47788887543

Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.

>PRK12288 GTPase RsgA; Reviewed

Probab=95.05  E-value=0.095  Score=46.83  Aligned_cols=68  Identities=19%  Similarity=0.094  Sum_probs=51.6

Q ss_pred             EEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHh
Q 030718           24 SIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQK  102 (172)
Q Consensus        24 ~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk  102 (172)
                      ..++|++..|+ .|.|.+.+|+.+.|.++++|++   +-.||+|++++.+.     ......|.|..||.+.  ..|.+
T Consensus        40 ~~g~Vi~~~~~-~~~v~~~~g~~~~~~~~g~~~~---~~vGD~V~~~~~~~-----~~~~~~~~I~~il~R~--n~L~R  107 (347)
T PRK12288         40 QEGIVISRFGQ-HADVEAADGEVHRCNIRRTIRS---LVTGDRVVWRPGKE-----ALEGVSGVVEAVHPRT--SVLTR  107 (347)
T ss_pred             cceEEEEEECC-EEEEEeCCCcEEEEEecccCCC---CCCCcEEEEEeCCC-----cccccceEEEEEeccc--ceEEC
Confidence            57999999885 6789999999999999999975   77899999985321     0011248899998877  45543

>PRK00098 GTPase RsgA; Reviewed

Probab=94.73  E-value=0.13  Score=44.49  Aligned_cols=61  Identities=11%  Similarity=0.049  Sum_probs=45.3

Q ss_pred             EEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718           25 IMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE   95 (172)
Q Consensus        25 I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~   95 (172)
                      -++|++..| +.|.|.+.+|..+.|.++++|++ +.-+-.||+|+|++.+       ++  .|-|..|+.+.
T Consensus         2 ~g~v~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~-------~~--~g~i~~i~~R~   63 (298)
T PRK00098          2 EGLIIKALG-GFYYVESEDGQVYQCRARGKFRKKTNTPAVGDRVEFSAEN-------ND--EGVILEIHERK   63 (298)
T ss_pred             eEEEEEEEC-CEEEEEECCCCEEEEEeccccccCCCCcCCCCEEEEEECC-------CC--cEEEEEEeCCC
Confidence            378888886 57788888899999999999984 3345579999998631       11  36677676655

>PRK12289 GTPase RsgA; Reviewed

Probab=93.58  E-value=0.34  Score=43.46  Aligned_cols=69  Identities=19%  Similarity=0.197  Sum_probs=49.1

Q ss_pred             CCCCcEEEEEEeecCCceEEEEeCCC------CEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEE
Q 030718           19 LQDGQSIMQVVSLRGSNLIEVLDAKD------EKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKV   91 (172)
Q Consensus        19 p~e~q~I~rV~~~~G~nl~eV~~~dG------~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~v   91 (172)
                      +...+..++|++..|+ .|.|.+.+|      ...+|...++||+ ..-+-.||.|++++.++     .+  ..|-|..|
T Consensus         4 ~~~~~~~g~V~~~~~~-~y~V~~~~~~~~~~~~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~-----~~--~~~~I~~v   75 (352)
T PRK12289          4 TTTSQLLGTVVAVQAN-FYRVQLDEPQNLNPPSLLLCTRRTRLKKIGQQVMVGDRVIVEEPDW-----QG--QRGAIAEV   75 (352)
T ss_pred             cccCcccEEEEEEECC-EEEEEECCCcccCcceEEEEEcccccccCCCCcccCCEEEEeecCC-----CC--CceEEEEE
Confidence            4556788999999885 567877654      4789999999985 23378899999985331     12  24777777


Q ss_pred             eCHH
Q 030718           92 LFYE   95 (172)
Q Consensus        92 l~~~   95 (172)
                      |-+.
T Consensus        76 lpR~   79 (352)
T PRK12289         76 LPRK   79 (352)
T ss_pred             eccc
Confidence            7655

>cd01854 YjeQ_engC YjeQ/EngC

Probab=93.14  E-value=0.28  Score=42.25  Aligned_cols=65  Identities=17%  Similarity=0.236  Sum_probs=47.8

Q ss_pred             EEEEeecCCceEEEEeCCCCEEEEEeeccccce-EEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHhC
Q 030718           26 MQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKS-MWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKS  103 (172)
Q Consensus        26 ~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~-vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk~  103 (172)
                      ++|++..| +.|.|.+. |..+.|.++++|++. .-+-.||+|++++.+       +  -.|.|..||.+.  ..|.+.
T Consensus         1 g~v~~~~~-~~~~v~~~-~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~-------~--~~~~i~~i~~R~--~~l~R~   66 (287)
T cd01854           1 GRVIAVHG-GFYDVETE-GGELRCRARGKLRKKGIKPVVGDWVEVEPDD-------D--GEGVIVRVLPRK--NLLSRP   66 (287)
T ss_pred             CEEEEEEC-CEEEEEEC-CeEEEEEeccccccCCCCccCCCEEEEEecC-------C--CcEEEEEEECCC--ceEEcc
Confidence            46777777 57788875 788999999999853 337789999998632       2  248888888776  345443

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK01889 GTPase RsgA; Reviewed

Probab=87.28  E-value=2.1  Score=38.23  Aligned_cols=67  Identities=16%  Similarity=0.169  Sum_probs=47.9

Q ss_pred             CCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-----eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718           21 DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-----SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE   95 (172)
Q Consensus        21 e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-----~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~   95 (172)
                      ++-..++|++..|+ .|.|.+.+| .+.|.+.+|||.     +--+-.||.|++++ +       +   .|.|..||.+.
T Consensus        26 ~~~~~g~v~~~~~~-~~~v~~~~~-~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~-~-------~---~g~I~~i~pR~   92 (356)
T PRK01889         26 EGLEPGRVVEEHRS-GYVVATEEG-EVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN-E-------K---KARIVRLLPRR   92 (356)
T ss_pred             cCCccEEEEEEECC-EEEEEECCc-EEEEEecchhhccccccCCCCccCcEEEEec-C-------C---ceEEEEEECCC
Confidence            44567999999874 667877665 567999999984     22356899999984 1       1   37888888777


Q ss_pred             HHHHHHh
Q 030718           96 QVRALQK  102 (172)
Q Consensus        96 qvk~Lrk  102 (172)
                      .  .|.+
T Consensus        93 ~--~L~R   97 (356)
T PRK01889         93 S--LFSR   97 (356)
T ss_pred             c--eEEc
Confidence            3  5544

>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site

Probab=87.17  E-value=3.4  Score=28.85  Aligned_cols=54  Identities=17%  Similarity=0.178  Sum_probs=34.8

Q ss_pred             EEEEEee-cCCceEEEEeCCCCEEEEE---eeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHH
Q 030718           25 IMQVVSL-RGSNLIEVLDAKDEKSLAL---FPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRAL  100 (172)
Q Consensus        25 I~rV~~~-~G~nl~eV~~~dG~~~L~~---iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~L  100 (172)
                      =+||++. .+.+.-.|. ..|.++-+.   +|.       ++.||||||..              |-.+.++++++.+..
T Consensus         6 P~~Vv~v~~~~~~A~v~-~~G~~~~V~~~lv~~-------v~~Gd~VLVHa--------------G~Ai~~ideeeA~e~   63 (68)
T PF01455_consen    6 PGRVVEVDEDGGMAVVD-FGGVRREVSLALVPD-------VKVGDYVLVHA--------------GFAIEKIDEEEAEET   63 (68)
T ss_dssp             EEEEEEEETTTTEEEEE-ETTEEEEEEGTTCTS-------B-TT-EEEEET--------------TEEEEEE-HHHHHHH
T ss_pred             cEEEEEEeCCCCEEEEE-cCCcEEEEEEEEeCC-------CCCCCEEEEec--------------ChhheeCCHHHHHHH
Confidence            3678888 345555554 457777664   444       89999999994              456778888877664

This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.

>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function

Probab=86.13  E-value=1.4  Score=34.25  Aligned_cols=50  Identities=14%  Similarity=0.086  Sum_probs=33.4

Q ss_pred             ccceEEEeeCCEEEEecCCcch------hhc--CCCeeeEEEEEEeCHHHHHHHHhCC
Q 030718           55 FQKSMWIKRGSFVVVDESGKEK------AIK--DGSKVACIVTKVLFYEQVRALQKST  104 (172)
Q Consensus        55 fRK~vWIkrGD~VlV~p~~~~~------~~e--~~~KvkgeIv~vl~~~qvk~Lrk~g  104 (172)
                      .|+-++||.||+|+|.+.+...      .+.  .++.....+.|-++++++..+++..
T Consensus         2 ~r~~~~i~vGD~V~v~~~~~~~~va~Ie~i~ed~~g~~~v~v~WF~~p~E~~~~~~~~   59 (130)
T cd04721           2 CRNGVTISVHDFVYVLSEEEDRYVAYIEDLYEDKKGSKMVKVRWFHTTDEVGAALSPD   59 (130)
T ss_pred             ccCCEEEECCCEEEEeCCCCCcEEEEEEEEEEcCCCCEEEEEEEecCHHHhccccCCC
Confidence            3788999999999998643000      001  1233477888889999998865544

BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.

>PRK10413 hydrogenase 2 accessory protein HypG; Provisional

Probab=84.56  E-value=4.5  Score=29.45  Aligned_cols=43  Identities=14%  Similarity=-0.003  Sum_probs=27.7

Q ss_pred             EEEEeecCCc-eEEEEeCCCCEEEEE---eeccccceEEEeeCCEEEEec
Q 030718           26 MQVVSLRGSN-LIEVLDAKDEKSLAL---FPAKFQKSMWIKRGSFVVVDE   71 (172)
Q Consensus        26 ~rV~~~~G~n-l~eV~~~dG~~~L~~---iP~KfRK~vWIkrGD~VlV~p   71 (172)
                      +||++..|.. .+-.....|.++-++   +|.-   ...++.||||||..
T Consensus         7 ~kVi~i~~~~~~~A~vd~~Gv~r~V~l~Lv~~~---~~~~~vGDyVLVHa   53 (82)
T PRK10413          7 GQVLAVGEDIHQLAQVEVCGIKRDVNIALICEG---NPADLLGQWVLVHV   53 (82)
T ss_pred             eEEEEECCCCCcEEEEEcCCeEEEEEeeeeccC---CcccccCCEEEEec
Confidence            6788887764 333344567777775   4321   02478999999995

>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF

Probab=81.75  E-value=5.2  Score=28.68  Aligned_cols=52  Identities=25%  Similarity=0.187  Sum_probs=32.9

Q ss_pred             EEEEeecCCceEEEEeCCCCEEEEE---eeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHH
Q 030718           26 MQVVSLRGSNLIEVLDAKDEKSLAL---FPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRAL  100 (172)
Q Consensus        26 ~rV~~~~G~nl~eV~~~dG~~~L~~---iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~L  100 (172)
                      +||++..|+ .-.| ...|.++-++   +|       -++.||||||..              |-.+.++..++.+..
T Consensus         7 ~~V~~i~~~-~A~v-~~~G~~~~v~l~lv~-------~~~vGD~VLVH~--------------G~Ai~~ide~eA~e~   61 (76)
T TIGR00074         7 GQVVEIDEN-IALV-EFCGIKRDVSLDLVG-------EVKVGDYVLVHV--------------GFAISVLDEEEARET   61 (76)
T ss_pred             eEEEEEcCC-EEEE-EcCCeEEEEEEEeeC-------CCCCCCEEEEec--------------ChhhhhCCHHHHHHH
Confidence            678888774 3333 3456665544   44       278999999995              334556677765544

An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
2dgy_A	111	Solution Structure Of The Eukaryotic Initiation Fac		4e-13

>pdb|2DGY|A Chain A, Solution Structure Of The Eukaryotic Initiation Factor 1a In Mgc11102 Protein Length = 111

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 6/88 (6%)
Query: 23  QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGS 82
           Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G 
Sbjct: 16  QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGE 69
Query: 83  KVACIVTKVLFYEQVRALQKSTEWPEIF 110
           KV   ++ VL  + VR+LQK   WPE F
Sbjct: 70  KVKAEISFVLCKDHVRSLQKEGFWPEAF 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
2dgy_A	111	MGC11102 protein; EIF-1A, structural genomics, NPP	4e-22
1d7q_A	143	Translation initiation factor 1A; OB-fold, beta-ba	1e-14
1jt8_A	102	EIF-1A, probable translation initiation factor 1A;	3e-10
2oqk_A	117	Putative translation initiation factor EIF-1A; mal	1e-08

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 111

 Score = 85.0 bits (210), Expect = 4e-22
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 6/111 (5%)

Query: 11  AAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVD 70
            +  + +   + Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD
Sbjct: 4   GSSGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD 63

Query: 71  ESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGS 121
                  I++G KV   ++ VL  + VR+LQK   WPE F        +G 
Sbjct: 64  ------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNSGP 108

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 143

 Score = 66.6 bits (162), Expect = 1e-14
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 14/147 (9%)

Query: 1   MKGGRKNLKRAAEEQSLTL------QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAK 54
              G KN +R   E           +DGQ   QV+ + G+  +E +     K L     K
Sbjct: 4   KGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK 63

Query: 55  FQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTN 114
            +K +WI     ++V          D       V      ++ R+L+   E PE  K  N
Sbjct: 64  LRKKVWINTSDIILVGLR-------DYQDNKADVILKYNADEARSLKAYGELPEHAK-IN 115

Query: 115 SDDANGSLERQACNHEENDQSESDDDD 141
             D  G  +      ++    + D DD
Sbjct: 116 ETDTFGPGDDDEIQFDDIGDDDEDIDD 142

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5 Length = 102

 Score = 53.8 bits (129), Expect = 3e-10
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 20  QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIK 79
           ++ + +  +  + G++ + V     +  L   P + +  +W++ G  V+V     +   K
Sbjct: 18  EENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQK 77

Query: 80  DGSKVACIVTKVLFYEQVRALQKSTEWPEI 109
                 C +       QV  L++     E+
Sbjct: 78  ------CDIIWRYTKTQVEWLKRKGYLDEL 101

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} Length = 117

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 1   MKGGRKNLKRAAEEQSLTL------QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAK 54
              G KN +R   +           ++GQ   QV  + G+  ++      +K L     K
Sbjct: 5   KGKGGKNRRRGKNDSEGDKRELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGK 64

Query: 55  FQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 111
            +K +W+  G  V+V     + +          +      ++ RAL+   E PE  K
Sbjct: 65  MRKKVWVNPGDIVLVSLRDFQDSK-------GDIILKYTPDEARALKSKGEIPETTK 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
2dgy_A	111	MGC11102 protein; EIF-1A, structural genomics, NPP	100.0
1d7q_A	143	Translation initiation factor 1A; OB-fold, beta-ba	100.0
1jt8_A	102	EIF-1A, probable translation initiation factor 1A;	99.97
2oqk_A	117	Putative translation initiation factor EIF-1A; mal	99.97
1ah9_A	71	IF1, initiation factor 1; ribosome binding, protei	99.68
1hr0_W	71	Translation initiation factor; ribosomal subunit,	99.62
3i4o_A	79	Translation initiation factor IF-1; cytoplasm, pro	99.61
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.12
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.3
2wfw_A	153	ARC; ATP-binding protein, proteasomal atpases, PAN	92.2
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	88.9
2wg5_A	109	General control protein GCN4, proteasome-activatin	87.52
3h43_A	85	Proteasome-activating nucleotidase; regulatory par	83.01
3d3r_A	103	Hydrogenase assembly chaperone HYPC/HUPF; small be	81.58

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=3.7e-36  Score=228.00  Aligned_cols=94  Identities=37%  Similarity=0.657  Sum_probs=89.2

Q ss_pred             hhccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEe
Q 030718           13 EEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVL   92 (172)
Q Consensus        13 ~e~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl   92 (172)
                      .+++++|++||+||+|++++|||+|+|+|+||.++||+|||||||+|||++||||+|++|++      ++++||+|+|+|
T Consensus         6 l~e~~~p~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~y------d~~~kg~Iv~r~   79 (111)
T 2dgy_A            6 SGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEE------GEKVKAEISFVL   79 (111)
T ss_dssp             CCSSCCCCSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSS------CSSCCEEEEEEC
T ss_pred             hccccCCCCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEeccc------CCcceEEEEEEe
Confidence            45689999999999999999999999999999999999999999999999999999999975      347899999999


Q ss_pred             CHHHHHHHHhCCCCchhhhc
Q 030718           93 FYEQVRALQKSTEWPEIFKS  112 (172)
Q Consensus        93 ~~~qvk~Lrk~g~WP~~F~~  112 (172)
                      +++|||+|+++|+||++|.+
T Consensus        80 ~~~qvk~L~k~g~wP~~F~~   99 (111)
T 2dgy_A           80 CKDHVRSLQKEGFWPEAFSE   99 (111)
T ss_dssp             CHHHHHHHHHHTCSCHHHHH
T ss_pred             CHHHHHHHHHcCCCChHHhh
Confidence            99999999999999999987

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5

Probab=100.00  E-value=2.3e-35  Score=232.19  Aligned_cols=101  Identities=23%  Similarity=0.302  Sum_probs=93.2

Q ss_pred             chhHHHHHhhccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCee
Q 030718            5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKV   84 (172)
Q Consensus         5 Rk~~~~~~~e~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~Kv   84 (172)
                      +||+...+..++++|+++|++|+|++++|||+|+|+|++|.++||+|||||||+|||++||+|||++|++     +.  .
T Consensus        14 ~K~~~~~~~~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~y-----d~--~   86 (143)
T 1d7q_A           14 GKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDY-----QD--N   86 (143)
T ss_dssp             CCCCSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSS-----SS--S
T ss_pred             ccccchhhhhcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeeccC-----CC--C
Confidence            4677655556689999999999999999999999999999999999999999999999999999999986     23  5


Q ss_pred             eEEEEEEeCHHHHHHHHhCCCCchhhhc
Q 030718           85 ACIVTKVLFYEQVRALQKSTEWPEIFKS  112 (172)
Q Consensus        85 kgeIv~vl~~~qvk~Lrk~g~WP~~F~~  112 (172)
                      ||+|+|+|+++||++|+++|+||++|..
T Consensus        87 KG~Ii~r~~~devk~L~k~g~wP~~f~~  114 (143)
T 1d7q_A           87 KADVILKYNADEARSLKAYGELPEHAKI  114 (143)
T ss_dssp             CCEEEEEECTTTHHHHHHHTSSCTTCCC
T ss_pred             eEEEEEEeCHHHHHHHHHcCCCChHHhh
Confidence            7999999999999999999999999977

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5

Probab=99.97  E-value=7.2e-33  Score=207.20  Aligned_cols=86  Identities=14%  Similarity=0.246  Sum_probs=81.2

Q ss_pred             cCCCC--CCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeC
Q 030718           16 SLTLQ--DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLF   93 (172)
Q Consensus        16 ~~~p~--e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~   93 (172)
                      +++|+  ++|++|+|++++|||+|+|+|+||.++||+|||||||+|||++||+|+|++|++      +.+.||+|+|+|+
T Consensus        12 ~~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~y------d~~~Kg~Iv~r~~   85 (102)
T 1jt8_A           12 VRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEV------QGDQKCDIIWRYT   85 (102)
T ss_dssp             CCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCC------TTSEEEEEEEESS
T ss_pred             cccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccC------CCCceEEEEEEeC
Confidence            66776  999999999999999999999999999999999999999999999999999986      2347899999999


Q ss_pred             HHHHHHHHhCCCCc
Q 030718           94 YEQVRALQKSTEWP  107 (172)
Q Consensus        94 ~~qvk~Lrk~g~WP  107 (172)
                      ++|+++|+++|+||
T Consensus        86 ~de~~~L~k~g~~p   99 (102)
T 1jt8_A           86 KTQVEWLKRKGYLD   99 (102)
T ss_dssp             CSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999999999

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=3.8e-31  Score=201.65  Aligned_cols=101  Identities=22%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             chhHHHHHhhccCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCee
Q 030718            5 RKNLKRAAEEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKV   84 (172)
Q Consensus         5 Rk~~~~~~~e~~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~Kv   84 (172)
                      +||+......++++|+++|++|+|++++||++|.|+|+||.++||+||||||++|||.+||+|+|+++++     +.  .
T Consensus        15 ~k~~~~~~~~~~~~~~~~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~-----~~--~   87 (117)
T 2oqk_A           15 GKNDSEGDKRELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDF-----QD--S   87 (117)
T ss_dssp             -------CCCCCCCCCTTEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTT-----CT--T
T ss_pred             cccccchhhhhccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcC-----CC--C
Confidence            4677665566689999999999999999999999999999999999999999999999999999999875     22  5


Q ss_pred             eEEEEEEeCHHHHHHHHhCCCCchhhhc
Q 030718           85 ACIVTKVLFYEQVRALQKSTEWPEIFKS  112 (172)
Q Consensus        85 kgeIv~vl~~~qvk~Lrk~g~WP~~F~~  112 (172)
                      +|.|++||.++||++|+++|+||++|..
T Consensus        88 kG~I~~~~~r~~~k~l~~~g~~p~~f~~  115 (117)
T 2oqk_A           88 KGDIILKYTPDEARALKSKGEIPETTKI  115 (117)
T ss_dssp             EEEEEEECCHHHHHHHHHTTSSCTTCCC
T ss_pred             eEEEEEEechHHHHHHHHcCCCCcccCc
Confidence            7999999999999999999999999975

>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5

Probab=99.68  E-value=2e-17  Score=115.19  Aligned_cols=65  Identities=14%  Similarity=-0.003  Sum_probs=57.8

Q ss_pred             CcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccce-EEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeC
Q 030718           22 GQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKS-MWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLF   93 (172)
Q Consensus        22 ~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~-vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~   93 (172)
                      .++.++|++++||++|.|+|++|..++|+||||||++ +||..||+|+|++++++     .  .+|.|+|+|.
T Consensus         6 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~-----~--~kg~I~~r~~   71 (71)
T 1ah9_A            6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYD-----L--SKGRIVFRSR   71 (71)
T ss_dssp             EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSC-----T--TEEEECSCCC
T ss_pred             eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCC-----C--CEEEEEEEEC
Confidence            3568999999999999999999999999999999976 99999999999987641     2  3799999874

>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W

Probab=99.62  E-value=1.4e-17  Score=116.29  Aligned_cols=64  Identities=16%  Similarity=0.025  Sum_probs=57.6

Q ss_pred             CcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEe
Q 030718           22 GQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVL   92 (172)
Q Consensus        22 ~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl   92 (172)
                      .++.++|++++||++|.|+|++|..++|+||||||| +|||..||+|+|++++++     .  .+|.|+|+|
T Consensus         7 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~-----~--~kg~I~~r~   71 (71)
T 1hr0_W            7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYD-----P--TRGRIVYRK   71 (71)
T ss_dssp             CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTC-----T--TCCEECSCC
T ss_pred             eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCC-----C--CEEEEEEeC
Confidence            567899999999999999999999999999999996 999999999999998642     2  369999876

>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5

Probab=99.61  E-value=6.4e-16  Score=110.62  Aligned_cols=64  Identities=17%  Similarity=0.042  Sum_probs=59.3

Q ss_pred             CcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEe
Q 030718           22 GQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVL   92 (172)
Q Consensus        22 ~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl   92 (172)
                      -++.++|++++||+.|.|.|.||.+++|+|+||||| +|||..||.|+|++|+++     .  -||.|+|+|
T Consensus        14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd-----~--~kgrIi~R~   78 (79)
T 3i4o_A           14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYD-----L--SRGRIVYRY   78 (79)
T ss_dssp             SEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTE-----E--EEEEEEEEC
T ss_pred             EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccC-----C--CcEEEEEEc
Confidence            578899999999999999999999999999999998 999999999999999862     3  479999997

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.12  E-value=0.072  Score=46.49  Aligned_cols=70  Identities=21%  Similarity=0.141  Sum_probs=50.9

Q ss_pred             EEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHHh
Q 030718           24 SIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQK  102 (172)
Q Consensus        24 ~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lrk  102 (172)
                      +.++|++..| ++|.|.+++|..+.|.+.++|++   +-.||.|++.+.+-   .+.|..++|-|+.|+-+.  -.|.+
T Consensus        48 ~~g~Vi~~~~-~~~~v~~~~g~~~~~~~r~~~~~---~~vGD~V~~~~~~~---~~~~~~~~~~I~~i~~R~--~~l~R  117 (358)
T 2rcn_A           48 AEGIVISRFG-MHADVESADGEVHRCNIRRTIRS---LVTGDRVVWRPGKA---AAEGVNVKGIVEAVHERT--SVLTR  117 (358)
T ss_dssp             EEEEEEEEET-TEEEEEETTSCEEEEEECTTCCC---CCBTCEEEEECBC----------CCEEEEEECCCS--CEEEE
T ss_pred             ceEEEEEEEC-CEEEEEeCCCcEEEEEecCCCCC---CCCCcEEEEEeCCC---ccccccccceEeEEeCCc--CcccC
Confidence            5799998766 57789999999999999999987   66999999986320   011111248899998876  44544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.30  E-value=0.093  Score=44.70  Aligned_cols=60  Identities=15%  Similarity=0.127  Sum_probs=44.9

Q ss_pred             EEEEeecCCceEEEEeCC---CCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718           26 MQVVSLRGSNLIEVLDAK---DEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE   95 (172)
Q Consensus        26 ~rV~~~~G~nl~eV~~~d---G~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~   95 (172)
                      ++|++..| +.|.|.+.+   |..+.|.++|+||+ .+=+-.||.|.+.+.+       ++  .|-|..|+.+.
T Consensus        13 g~vi~~~~-~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~-------~~--~~~i~~i~~R~   76 (307)
T 1t9h_A           13 GKIIKALS-GFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN-------DK--EGYLMEIKERT   76 (307)
T ss_dssp             EEEEEEET-TEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT-------TS--CEEEEEECCCS
T ss_pred             eEEEEEEC-CEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC-------CC--ceEEEEEcchh
Confidence            66777665 677888876   88999999999996 2334489999998632       22  48888888764

>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A

Probab=92.20  E-value=0.24  Score=39.03  Aligned_cols=51  Identities=16%  Similarity=0.214  Sum_probs=41.4

Q ss_pred             cEEEEEEeecCC-ceEEEEeCCCCEEEEEeeccccceE-----------------EEeeCCEEEEecCC
Q 030718           23 QSIMQVVSLRGS-NLIEVLDAKDEKSLALFPAKFQKSM-----------------WIKRGSFVVVDESG   73 (172)
Q Consensus        23 q~I~rV~~~~G~-nl~eV~~~dG~~~L~~iP~KfRK~v-----------------WIkrGD~VlV~p~~   73 (172)
                      -.|+.|.+.++. ++..|....|+++++++-+.++...                 =+|.||-|+|++..
T Consensus        68 Gev~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~ra  136 (153)
T 2wfw_A           68 GEISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTKA  136 (153)
T ss_dssp             EEEEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETTT
T ss_pred             cCEEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCCC
Confidence            468899999998 8999999999999999999997632                 38999999999853

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=88.90  E-value=0.93  Score=37.67  Aligned_cols=49  Identities=16%  Similarity=0.118  Sum_probs=38.5

Q ss_pred             CcEEEEEEeecCCceE--EEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCC
Q 030718           22 GQSIMQVVSLRGSNLI--EVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESG   73 (172)
Q Consensus        22 ~q~I~rV~~~~G~nl~--eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~   73 (172)
                      +-..++|++..|+ +|  .|. .+|..+.|.++++||+ .+ .-.||.|.+.+++
T Consensus         5 ~~~~g~v~~~~~~-~~~~~v~-~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~   56 (302)
T 2yv5_A            5 ELKRGLVVDREAQ-MIGVYLF-EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD   56 (302)
T ss_dssp             CCEEEEEEEEETT-EEEEEET-TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE
T ss_pred             CceeEEEEEeeCC-eEEEEEe-cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc
Confidence            4567999988775 45  555 7788999999999996 34 6699999998753

>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A

Probab=87.52  E-value=1  Score=32.87  Aligned_cols=51  Identities=12%  Similarity=0.085  Sum_probs=43.4

Q ss_pred             CCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEec
Q 030718           20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDE   71 (172)
Q Consensus        20 ~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p   71 (172)
                      .....||.|++..+.+.+.|....|.++++.+.+...+.- ++.|+-|.+..
T Consensus        35 ~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~-LkpG~rVaLn~   85 (109)
T 2wg5_A           35 SPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEE-LKPGARVALNQ   85 (109)
T ss_dssp             SCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTT-CCTTCEEEEET
T ss_pred             CCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHH-CCCCCEEEECC
Confidence            4578999999999999999999999999999988887544 67777777764

>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}

Probab=83.01  E-value=3.4  Score=28.92  Aligned_cols=51  Identities=14%  Similarity=0.074  Sum_probs=44.1

Q ss_pred             CCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEec
Q 030718           20 QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDE   71 (172)
Q Consensus        20 ~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p   71 (172)
                      ..++.||.|++..+.+.+.|....|.++++.+.+...+.- ++.|+-|.+..
T Consensus        16 ~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~-LkpG~rVaLn~   66 (85)
T 3h43_A           16 VPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDD-LAPGKRVCLNQ   66 (85)
T ss_dssp             SCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGG-CCTTCEEEECT
T ss_pred             CCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHH-CCCCCEEEECC
Confidence            4578999999999999999999999999999998877543 48888888874

>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1

Probab=81.58  E-value=6.7  Score=28.74  Aligned_cols=55  Identities=15%  Similarity=0.164  Sum_probs=37.6

Q ss_pred             EEEEeecCC-ceEEEEeCCCCEEEEE---eeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHH
Q 030718           26 MQVVSLRGS-NLIEVLDAKDEKSLAL---FPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQ  101 (172)
Q Consensus        26 ~rV~~~~G~-nl~eV~~~dG~~~L~~---iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lr  101 (172)
                      +||++..+. +.-.| ...|.+|-++   +|.-      ++.||||||-.              |-.+.++..++++...
T Consensus        28 ~kVveI~~~~~~A~V-d~~Gv~reV~l~Lv~e~------~~vGDyVLVHv--------------GfAi~kIDeeeA~etl   86 (103)
T 3d3r_A           28 SQVVAVDNERQSVTV-DTLGVRRDVSSHLMTEP------LAIGDYVLIHI--------------GFVMNKIDRNDALQSL   86 (103)
T ss_dssp             EEEEEEETTTTEEEE-EETTEEEEEECTTBSSC------CCTTCEEEEEE--------------EEEEEEECHHHHHHHH
T ss_pred             EEEEEEeCCCCEEEE-EcCCEEEEEEEEeecCC------CCCCCEEEEee--------------chhhhhCCHHHHHHHH
Confidence            567777654 44444 5568887776   4531      45799999984              6677888988776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1d7qa_	143	b.40.4.5 (A:) Translation initiation factor-1a, eI	1e-15
d1jt8a_	102	b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a	2e-12

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 1e-15
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 14/147 (9%)

Query: 1   MKGGRKNLKRAAEEQSLTL------QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAK 54
              G KN +R   E           +DGQ   QV+ + G+  +E +     K L     K
Sbjct: 4   KGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK 63

Query: 55  FQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTN 114
            +K +WI     ++V          D       V      ++ R+L+   E PE  K  N
Sbjct: 64  LRKKVWINTSDIILVGLR-------DYQDNKADVILKYNADEARSLKAYGELPEHAK-IN 115

Query: 115 SDDANGSLERQACNHEENDQSESDDDD 141
             D  G  +      ++    + D DD
Sbjct: 116 ETDTFGPGDDDEIQFDDIGDDDEDIDD 142

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 102

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Archaeal initiation factor-1a, aIF1a
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 58.2 bits (141), Expect = 2e-12
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 20  QDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIK 79
           ++ + +  +  + G++ + V     +  L   P + +  +W++ G  V+V     +   K
Sbjct: 18  EENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQK 77

Query: 80  DGSKVACIVTKVLFYEQVRALQKSTEWPEI 109
                 C +       QV  L++     E+
Sbjct: 78  ------CDIIWRYTKTQVEWLKRKGYLDEL 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1d7qa_	143	Translation initiation factor-1a, eIF1a {Human (Ho	99.96
d1jt8a_	102	Archaeal initiation factor-1a, aIF1a {Archaeon Met	99.96
d1ah9a_	71	Translational initiation factor 1, IF1 {Escherichi	99.68
d1hr0w_	71	Translational initiation factor 1, IF1 {Escherichi	99.56
d1u0la1	66	Probable GTPase EngC (YjeQ), N-terminal domain {Th	97.82
d1t9ha1	67	Probable GTPase EngC (YjeQ), N-terminal domain {Ba	97.8
d3d3ra1	76	Hydrogenase expression/formation protein HypC {She	92.24
d2ot2a1	90	Hydrogenase expression/formation protein HypC {Esc	80.88
d2z1ca1	71	Hydrogenase expression/formation protein HypC {The	80.45

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-30  Score=202.80  Aligned_cols=90  Identities=23%  Similarity=0.306  Sum_probs=85.1

Q ss_pred             cCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718           16 SLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE   95 (172)
Q Consensus        16 ~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~   95 (172)
                      ++.++++|+||+|++++|+++|+|.|+||.++||+||||||+++||++||||||.+|+|     +.  .||+|+|+|+++
T Consensus        25 l~~~ee~e~ya~V~k~lG~~~~~V~~~dg~~rl~~irgk~r~r~~i~~Gd~VlV~~rd~-----e~--~K~DIl~~Y~~~   97 (143)
T d1d7qa_          25 LVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDY-----QD--NKADVILKYNAD   97 (143)
T ss_dssp             CCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSS-----SS--SCCEEEEEECTT
T ss_pred             eccCCCCeEEEEEEEEcCCCEEEEEECCCCEEEEEecCcceeEEEEeCCCEEEEeccCC-----cC--cEEEEEEECCHH
Confidence            67789999999999999999999999999999999999999999999999999999987     23  469999999999


Q ss_pred             HHHHHHhCCCCchhhhc
Q 030718           96 QVRALQKSTEWPEIFKS  112 (172)
Q Consensus        96 qvk~Lrk~g~WP~~F~~  112 (172)
                      |+++|+++++||..|..
T Consensus        98 e~~~L~~~~~ip~~~~~  114 (143)
T d1d7qa_          98 EARSLKAYGELPEHAKI  114 (143)
T ss_dssp             THHHHHHHTSSCTTCCC
T ss_pred             HHHHHHHCCCCChhhhh
Confidence            99999999999999865

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Archaeal initiation factor-1a, aIF1a
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=2.9e-30  Score=190.91  Aligned_cols=88  Identities=15%  Similarity=0.274  Sum_probs=81.9

Q ss_pred             cCCCCCCcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHH
Q 030718           16 SLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE   95 (172)
Q Consensus        16 ~~~p~e~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~   95 (172)
                      ++.++++|+||+|++++||++|+|.|+||.++||+|||||||++||++||+|||.+|+|+      .+.||+|+|+|+++
T Consensus        14 lp~~ee~e~y~~V~k~lG~~~~~V~c~dg~~rl~~irGK~Rk~~~I~~Gd~VlV~~r~~~------~~~K~dIl~~Y~~~   87 (102)
T d1jt8a_          14 IPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQ------GDQKCDIIWRYTKT   87 (102)
T ss_dssp             CSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCT------TSEEEEEEEESSCS
T ss_pred             CCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcCCcceeeEecCCCEEEEEeeecC------CCcEEEEEEECCHH
Confidence            455688999999999999999999999999999999999999999999999999999872      34689999999999


Q ss_pred             HHHHHHhCCCCchh
Q 030718           96 QVRALQKSTEWPEI  109 (172)
Q Consensus        96 qvk~Lrk~g~WP~~  109 (172)
                      ||++|++.|+||+.
T Consensus        88 ev~~L~~~~~ipe~  101 (102)
T d1jt8a_          88 QVEWLKRKGYLDEL  101 (102)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCc
Confidence            99999999999974

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=7.9e-18  Score=116.66  Aligned_cols=63  Identities=16%  Similarity=0.040  Sum_probs=57.7

Q ss_pred             cEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEe
Q 030718           23 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVL   92 (172)
Q Consensus        23 q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl   92 (172)
                      |+.++|++++||..|.|.|+||.+++|+||||||| +|||..||.|+|++|+++     .+  ||.|+|+|
T Consensus         7 e~~G~V~e~lg~~~f~V~l~ng~~~~a~i~Gkmrk~ri~i~~GD~V~Vel~pyd-----~~--kgrIi~R~   70 (71)
T d1ah9a_           7 EMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYD-----LS--KGRIVFRS   70 (71)
T ss_dssp             ECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSC-----TT--EEEECSCC
T ss_pred             EEEEEEEEEcCCCEEEEEeCCCCEEEEEccchhheeEEEecCCCEEEEEECccC-----CC--cEEEEEEc
Confidence            45599999999999999999999999999999998 899999999999999873     43  69999987

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=8.2e-17  Score=111.45  Aligned_cols=63  Identities=16%  Similarity=0.044  Sum_probs=57.4

Q ss_pred             CcEEEEEEeecCCceEEEEeCCCCEEEEEeeccccc-eEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEE
Q 030718           22 GQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQK-SMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKV   91 (172)
Q Consensus        22 ~q~I~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK-~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~v   91 (172)
                      -|+.++|++++||..|.|.|+||.+++|+||||||| +|||..||.|+|++|+++     .+  ||.|+|+
T Consensus         7 i~~~G~V~~~l~~~~f~V~l~ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel~pyd-----~~--kgrIi~R   70 (71)
T d1hr0w_           7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYD-----PT--RGRIVYR   70 (71)
T ss_dssp             CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTC-----TT--CCEECSC
T ss_pred             EEEEEEEEEECCCCEEEEEECCCCEEEEEecchhheeeEEecCCCEEEEEECccC-----CC--cEEEEEc
Confidence            377899999999999999999999999999999997 899999999999999873     33  5999875

>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Probable GTPase EngC (YjeQ), N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=3e-05  Score=51.37  Aligned_cols=58  Identities=28%  Similarity=0.361  Sum_probs=45.3

Q ss_pred             EEEEeecCCceEEEEe-CCCCEEEEEeeccccce-EEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeC
Q 030718           26 MQVVSLRGSNLIEVLD-AKDEKSLALFPAKFQKS-MWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLF   93 (172)
Q Consensus        26 ~rV~~~~G~nl~eV~~-~dG~~~L~~iP~KfRK~-vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~   93 (172)
                      +.|++..| |.|.|++ .+|+.+.|.++|+||+. +=+=.||+|++.|-+      .+   .|-|..|+.
T Consensus         5 G~Vi~~~~-~~y~V~~~e~g~~~~c~~rG~lr~~~~~~~VGD~V~~~~~~------~~---~g~I~~I~p   64 (66)
T d1u0la1           5 GIVVSFHS-NMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE------TG---SGVIENVLH   64 (66)
T ss_dssp             EEEEEEET-TEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC------SS---SEEEEEECC
T ss_pred             EEEEEEEC-CEEEEEECCCCcEEEEEeeccccccCCccccCCEEEEEECC------CC---eEEEEEEcC
Confidence            56777665 6889988 57999999999999863 446789999999732      22   589999875

>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Probable GTPase EngC (YjeQ), N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.80  E-value=3.3e-05  Score=51.33  Aligned_cols=58  Identities=16%  Similarity=0.147  Sum_probs=45.7

Q ss_pred             EEEEeecCCceEEEEeC---CCCEEEEEeeccccce-EEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeC
Q 030718           26 MQVVSLRGSNLIEVLDA---KDEKSLALFPAKFQKS-MWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLF   93 (172)
Q Consensus        26 ~rV~~~~G~nl~eV~~~---dG~~~L~~iP~KfRK~-vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~   93 (172)
                      ++|+++.| |.|.|.+.   +|+.+.|.++||||++ +=+-.||+|.+++.+       ++  .|-|..|+.
T Consensus         4 G~Vik~~~-~~y~V~~e~~~~g~~~~C~~RGk~r~~~~~p~VGD~V~~~~~~-------~~--~g~I~~I~p   65 (67)
T d1t9ha1           4 GKIIKALS-GFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN-------DK--EGYLMEIKE   65 (67)
T ss_dssp             EEEEEEET-TEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT-------TS--CEEEEEECC
T ss_pred             EEEEEEEC-CEEEEEecccCCCcEEEEEEceeEecCCCccCcCcEEEEEEcc-------CC--eEEEEEEec
Confidence            67888886 67888886   6899999999999964 445589999999732       22  588999875

>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: OB-fold
superfamily: HupF/HypC-like
family: HupF/HypC-like
domain: Hydrogenase expression/formation protein HypC
species: Shewanella oneidensis [TaxId: 70863]

Probab=92.24  E-value=0.3  Score=32.37  Aligned_cols=55  Identities=13%  Similarity=0.071  Sum_probs=40.8

Q ss_pred             EEEEeecCCceEEEEeCCCCEEEEEe---eccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHH
Q 030718           26 MQVVSLRGSNLIEVLDAKDEKSLALF---PAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRAL  100 (172)
Q Consensus        26 ~rV~~~~G~nl~eV~~~dG~~~L~~i---P~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~L  100 (172)
                      +||++..|++..-.....|.+|-++|   |.      .++.||||||..              |-.+.++..++.+..
T Consensus         7 ~kVvei~~~~~~a~vd~~G~~r~v~l~lv~e------~v~vGDyVLVH~--------------G~Ai~~id~eeA~e~   64 (76)
T d3d3ra1           7 SQVVAVDNERQSVTVDTLGVRRDVSSHLMTE------PLAIGDYVLIHI--------------GFVMNKIDRNDALQS   64 (76)
T ss_dssp             EEEEEEETTTTEEEEEETTEEEEEECTTBSS------CCCTTCEEEEEE--------------EEEEEEECHHHHHHH
T ss_pred             EEEEEEcCCCcEEEEECCCeEEEEEEEeccC------CCCCCCEEEEec--------------chhhhhCCHHHHHHH
Confidence            67888888766555566798888864   43      256999999984              677788888877654

>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: HupF/HypC-like
family: HupF/HypC-like
domain: Hydrogenase expression/formation protein HypC
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=4.5  Score=27.12  Aligned_cols=61  Identities=13%  Similarity=0.059  Sum_probs=36.9

Q ss_pred             EEEEEeecCCceEEEEeCCCCEEEEEeec--cccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHHHH
Q 030718           25 IMQVVSLRGSNLIEVLDAKDEKSLALFPA--KFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQ  101 (172)
Q Consensus        25 I~rV~~~~G~nl~eV~~~dG~~~L~~iP~--KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~Lr  101 (172)
                      =+||++..|+ .-.|. ..|.+|-++|-=  -..---=++.||||||.-              |-.+.++..++.+...
T Consensus         6 P~kV~~i~~~-~A~vd-~~Gv~r~v~l~lv~~~~~~~e~~vGDyVLVH~--------------G~Ai~~ideeeA~etl   68 (90)
T d2ot2a1           6 PGQIRTIDGN-QAKVD-VCGIQRDVDLTLVGSCDENGQPRVGQWVLVHV--------------GFAMSVINEAEARDTL   68 (90)
T ss_dssp             EEEEEEECSS-EEEEE-CSSSEEEEECTTTCSBCTTSCBCTTCEEEEET--------------TEEEEEECHHHHHHHH
T ss_pred             cEEEEEEcCC-EEEEE-eCCcEEEEEEeccccccCCcccCCCCEEEEeh--------------hHHHHhCCHHHHHHHH
Confidence            3678887664 44444 458877776510  000000156899999994              4567788888776653

>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}

class: All beta proteins
fold: OB-fold
superfamily: HupF/HypC-like
family: HupF/HypC-like
domain: Hydrogenase expression/formation protein HypC
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=80.45  E-value=3.7  Score=26.35  Aligned_cols=54  Identities=19%  Similarity=0.185  Sum_probs=34.0

Q ss_pred             EEEEeecCCceEEEEeCCCCEEEEEeeccccceEEEeeCCEEEEecCCcchhhcCCCeeeEEEEEEeCHHHHHH
Q 030718           26 MQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRA   99 (172)
Q Consensus        26 ~rV~~~~G~nl~eV~~~dG~~~L~~iP~KfRK~vWIkrGD~VlV~p~~~~~~~e~~~KvkgeIv~vl~~~qvk~   99 (172)
                      +||++..| +.-.| ...|.++-++|--=  --  ++.||||||..              |-.+.++..++.+.
T Consensus         6 ~~Vv~i~~-~~A~v-d~~G~~r~v~l~lv--~e--~~vGDyVLVh~--------------G~Ai~~id~eeA~e   59 (71)
T d2z1ca1           6 GKVIEVNG-PVAVV-DFGGVKREVRLDLM--PD--TKPGDWVIVHT--------------GFAIEKLDEKKAME   59 (71)
T ss_dssp             EEEEEEET-TEEEE-EETTEEEEEECTTS--TT--CCTTCEEEEET--------------TEEEEEECHHHHHH
T ss_pred             EEEEEECC-CEEEE-EcCCeEEEEEEEee--CC--CCCCCEEEEee--------------chhhhhCCHHHHHH
Confidence            56777644 44444 55688887764211  01  56899999995              34566777776654