Citrus Sinensis ID: 030728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQN
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHEEcccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msieqpqpsqnLNQLMLQQssgnlsfsssnlskddeEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNkelkplghtcQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQN
Flexible Loop (DISEMBL)
msieqpqpsqNLNQLMLQQSSGNLSFSSsnlskddeEMSRSALTtfrakeeeiekkklevrekvqahlgrveeetkrLATIREElealadpmrkeVAVVRKKidsvnkelkplghtcqkkEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKkleelsksidsiqn
Low Complexity Region (SEG)
MSIEqpqpsqnlnqlmlqqssgnlsfsssnlsKDDEEMSRSALTTFRAkeeeiekkklevrekVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQN
Disordered region (IsUnstruct)
*************************************************************************************************V******************************************LITKLM**************************
Disordered Region (DISOPRED)
*********************************************************************************REELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELV***********************
Disordered Region (DISEMBL)
*********QNLNQLMLQQS**********************LTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQN
Disordered Region (DISPRO)
*******************************************TTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTxxxxxxxxxxxxxxxxxxxxxKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
351723393	164	uncharacterized protein LOC100499923 [Gl	0.941	0.987	0.846	4e-70
255637447	164	unknown [Glycine max]	0.941	0.987	0.840	3e-69
351724745	167	uncharacterized protein LOC100527015 [Gl	0.941	0.970	0.825	1e-67
388511961	166	unknown [Lotus japonicus]	0.959	0.993	0.790	1e-65
449440207	167	PREDICTED: uncharacterized protein LOC10	0.877	0.904	0.855	2e-65
357510953	168	hypothetical protein MTR_7g104020 [Medic	0.947	0.970	0.842	3e-63
30686787	192	uncharacterized protein [Arabidopsis tha	0.901	0.807	0.765	5e-62
357510955	171	hypothetical protein MTR_7g104020 [Medic	0.947	0.953	0.827	9e-62
225436319	172	PREDICTED: uncharacterized protein LOC10	0.941	0.941	0.748	1e-61
297823455	191	hypothetical protein ARALYDRAFT_482617 [	0.901	0.811	0.751	2e-60

>gi|351723393|ref|NP_001238045.1| uncharacterized protein LOC100499923 [Glycine max] gi|255627713|gb|ACU14201.1| unknown [Glycine max]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 138/163 (84%), Positives = 156/163 (95%), Gaps = 1/163 (0%)

Query: 9   SQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           S+N N  ++ Q+SG+LSFSS +LSK+DEEMSRSAL+TFRAKEEEIE+KK+EVREKVQ  L
Sbjct: 3   SENQNNQLVVQNSGSLSFSS-HLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQL 61

Query: 69  GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128
           GRVEEETKRLATIREELEALADPMRKEVA+VRK+IDSVNKELKPLGHTCQKKE+EYK+AL
Sbjct: 62  GRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDAL 121

Query: 129 EAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
           EAFNEKN+EKVQLITKLMELVGESE+LRMKKLEELSK+IDS+Q
Sbjct: 122 EAFNEKNREKVQLITKLMELVGESERLRMKKLEELSKNIDSMQ 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637447|gb|ACU19051.1| unknown [Glycine max]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 137/163 (84%), Positives = 155/163 (95%), Gaps = 1/163 (0%)

Query: 9   SQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           S+N N  ++ Q+SG+LSFSS +LSK+DEE+SRSAL+TFRAKEEEIE+KK+EVREKVQ  L
Sbjct: 3   SENQNNQLVVQNSGSLSFSS-HLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQLQL 61

Query: 69  GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128
           GRVEEETKRLATIREELEALADPMRKEVA+VRK+IDSVNKELKPLGHTCQKKE+EYK+AL
Sbjct: 62  GRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDAL 121

Query: 129 EAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
           EAFNEKN+EKVQLITKLMELV ESE+LRMKKLEELSK+IDSIQ
Sbjct: 122 EAFNEKNREKVQLITKLMELVSESERLRMKKLEELSKNIDSIQ 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724745|ref|NP_001237324.1| uncharacterized protein LOC100527015 [Glycine max] gi|255631368|gb|ACU16051.1| unknown [Glycine max]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 155/166 (93%), Gaps = 4/166 (2%)

Query: 9   SQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           S+N N  ++ Q+SG+LSFSS +LSK+DEE+SRSAL+TFRAKEEEIE+KK+EVREKVQ  L
Sbjct: 3   SENQNNQLVVQNSGSLSFSS-HLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQLQL 61

Query: 69  GRVEEETKRLATIREE---LEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYK 125
           GRVEEETKRLATIREE   LEALADPMRKEVA+VRK+IDSVNKELKPLGHTCQKKE+EYK
Sbjct: 62  GRVEEETKRLATIREEYQELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYK 121

Query: 126 EALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
           +ALEAFNEKN+EKVQLITKLMELV ESE+LRMKKLEELSK+IDSIQ
Sbjct: 122 DALEAFNEKNREKVQLITKLMELVSESERLRMKKLEELSKNIDSIQ 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511961|gb|AFK44042.1| unknown [Lotus japonicus]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 132/167 (79%), Positives = 153/167 (91%), Gaps = 2/167 (1%)

Query: 5   QPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKV 64
           Q    Q  NQL++Q +SG+LSFSS  +SK+DEEMSRSAL+ F+AKEEEIE+KK+EVREKV
Sbjct: 2   QGGGEQQNNQLVVQ-NSGSLSFSS-QMSKEDEEMSRSALSNFKAKEEEIERKKMEVREKV 59

Query: 65  QAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREY 124
           Q  LGRVEEETKRLATIREELE+LADPMRKEV +VRK+IDSVNKELKPLGHTCQKKE+EY
Sbjct: 60  QLQLGRVEEETKRLATIREELESLADPMRKEVTIVRKRIDSVNKELKPLGHTCQKKEKEY 119

Query: 125 KEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
           K+ALEAFNEKN+EKVQLIT+LMELV ESE+LRMKKLEELSK+IDS++
Sbjct: 120 KDALEAFNEKNREKVQLITRLMELVSESERLRMKKLEELSKNIDSLK 166

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440207|ref|XP_004137876.1| PREDICTED: uncharacterized protein LOC101210169 isoform 1 [Cucumis sativus] gi|449440209|ref|XP_004137877.1| PREDICTED: uncharacterized protein LOC101210169 isoform 2 [Cucumis sativus] gi|449516930|ref|XP_004165499.1| PREDICTED: uncharacterized protein LOC101227916 [Cucumis sativus]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/152 (85%), Positives = 147/152 (96%), Gaps = 1/152 (0%)

Query: 20  SSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLA 79
           ++G+LSFSS +LSK+DEE+SRSAL+TFRAKEEEIE+KK+EVREKVQA LGRVEEETKRLA
Sbjct: 17  NTGSLSFSS-HLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLA 75

Query: 80  TIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKV 139
            IREELEALADPMRKEVA VRKKID+VNKELKPLGHTCQKKE+EYKEALEAFN+KNKEKV
Sbjct: 76  CIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKKEKEYKEALEAFNDKNKEKV 135

Query: 140 QLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
           QLITKLMELV ESE+LR+KKLEELSK+ID+I+
Sbjct: 136 QLITKLMELVSESERLRLKKLEELSKNIDTIR 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510953|ref|XP_003625765.1| hypothetical protein MTR_7g104020 [Medicago truncatula] gi|355500780|gb|AES81983.1| hypothetical protein MTR_7g104020 [Medicago truncatula] gi|388494826|gb|AFK35479.1| unknown [Medicago truncatula]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 139/165 (84%), Positives = 158/165 (95%), Gaps = 2/165 (1%)

Query: 7   QPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQA 66
           Q S + NQL++Q +SG+LSFSS +LSK+DEEMSRSAL+TFRAKEEEIEKKK+EVR+KVQ 
Sbjct: 4   QQSNSNNQLVVQ-NSGSLSFSS-HLSKEDEEMSRSALSTFRAKEEEIEKKKMEVRDKVQF 61

Query: 67  HLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKE 126
            LGRVEEETKRLATIREELEALADPMRKEV++VRK+IDSVNKELKPLGHTCQKKE+EYK+
Sbjct: 62  QLGRVEEETKRLATIREELEALADPMRKEVSLVRKRIDSVNKELKPLGHTCQKKEKEYKD 121

Query: 127 ALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
           ALEAFNEKN+EKVQLITKLMELVGESE+LRMKKLEELSK+IDS+Q
Sbjct: 122 ALEAFNEKNREKVQLITKLMELVGESERLRMKKLEELSKNIDSMQ 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686787|ref|NP_850265.1| uncharacterized protein [Arabidopsis thaliana] gi|110736604|dbj|BAF00267.1| hypothetical protein [Arabidopsis thaliana] gi|330254155|gb|AEC09249.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 148/158 (93%), Gaps = 3/158 (1%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSFSS ++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 38  NEMVLH--TGSLSFSS-HMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 94

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKKEREYKEAL+ FN
Sbjct: 95  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFN 154

Query: 133 EKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSI 170
           EKN+EKVQLITKLMELVGESEKLRM KLEELSKSI+++
Sbjct: 155 EKNREKVQLITKLMELVGESEKLRMIKLEELSKSIETV 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510955|ref|XP_003625766.1| hypothetical protein MTR_7g104020 [Medicago truncatula] gi|355500781|gb|AES81984.1| hypothetical protein MTR_7g104020 [Medicago truncatula]

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 139/168 (82%), Positives = 158/168 (94%), Gaps = 5/168 (2%)

Query: 7   QPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQA 66
           Q S + NQL++Q +SG+LSF SS+LSK+DEEMSRSAL+TFRAKEEEIEKKK+EVR+KVQ 
Sbjct: 4   QQSNSNNQLVVQ-NSGSLSF-SSHLSKEDEEMSRSALSTFRAKEEEIEKKKMEVRDKVQF 61

Query: 67  HLGRVEEETKRLATIRE---ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKERE 123
            LGRVEEETKRLATIRE   ELEALADPMRKEV++VRK+IDSVNKELKPLGHTCQKKE+E
Sbjct: 62  QLGRVEEETKRLATIREEYQELEALADPMRKEVSLVRKRIDSVNKELKPLGHTCQKKEKE 121

Query: 124 YKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
           YK+ALEAFNEKN+EKVQLITKLMELVGESE+LRMKKLEELSK+IDS+Q
Sbjct: 122 YKDALEAFNEKNREKVQLITKLMELVGESERLRMKKLEELSKNIDSMQ 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436319|ref|XP_002267642.1| PREDICTED: uncharacterized protein LOC100243168 [Vitis vinifera] gi|297734837|emb|CBI17071.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 122/163 (74%), Positives = 146/163 (89%), Gaps = 1/163 (0%)

Query: 10  QNLNQLMLQQSSGNLSFSSSNLSKD-DEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           Q  +Q+   ++SG +S++ S L+ D DEEMSRSAL+ FRAKEEEIE+KK+EVRE+VQA L
Sbjct: 10  QQQSQMQKVKNSGVISYNGSPLTDDKDEEMSRSALSAFRAKEEEIERKKMEVRERVQAQL 69

Query: 69  GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEAL 128
           GRVEEETKRLA IREELEAL+DPMRKEVA++RK+ID+VN+EL+PLG  CQKKE+EYKEAL
Sbjct: 70  GRVEEETKRLAEIREELEALSDPMRKEVAIIRKRIDAVNRELRPLGQGCQKKEKEYKEAL 129

Query: 129 EAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
           EAFNEKNKEK QL+TKLMELV ESE+LRMKKLEELSK+I+SIQ
Sbjct: 130 EAFNEKNKEKAQLVTKLMELVSESERLRMKKLEELSKNIESIQ 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823455|ref|XP_002879610.1| hypothetical protein ARALYDRAFT_482617 [Arabidopsis lyrata subsp. lyrata] gi|297325449|gb|EFH55869.1| hypothetical protein ARALYDRAFT_482617 [Arabidopsis lyrata subsp. lyrata]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/161 (75%), Positives = 148/161 (91%), Gaps = 6/161 (3%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSF SS++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 34  NEMVLH--TGSLSF-SSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 90

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKKEREYKEAL+ FN
Sbjct: 91  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFN 150

Query: 133 EKNKEKVQLITKLME---LVGESEKLRMKKLEELSKSIDSI 170
           EKN+EKVQLITKLME   LVGESEKLRM KLEELSKSI+++
Sbjct: 151 EKNREKVQLITKLMEMEQLVGESEKLRMIKLEELSKSIETV 191

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2100083	178	AT3G09980 "AT3G09980" [Arabido	0.802	0.775	0.797	8.3e-51
TAIR|locus:2044883	195	AT2G36410 [Arabidopsis thalian	0.802	0.707	0.723	2.3e-46
TAIR|locus:2085231	180	AT3G52920 [Arabidopsis thalian	0.796	0.761	0.721	4.4e-45
TAIR|locus:2144618	173	AT5G03660 "AT5G03660" [Arabido	0.790	0.786	0.683	1.5e-42
TAIR|locus:2041985	174	AT2G27740 "AT2G27740" [Arabido	0.779	0.770	0.604	3.4e-38
TAIR|locus:2085206	164	AT3G52900 "AT3G52900" [Arabido	0.802	0.841	0.507	2.3e-32
TAIR|locus:1009023152	155	AT2G36355 "AT2G36355" [Arabido	0.627	0.696	0.574	1.9e-28
RGD|1564990	368	Gorab "golgin, RAB6-interactin	0.575	0.269	0.303	4.3e-08
UNIPROTKB|A5PKK7	370	GORAB "RAB6-interacting golgin	0.575	0.267	0.303	5.6e-08
UNIPROTKB|F1MBY2	395	GORAB "RAB6-interacting golgin	0.575	0.250	0.303	6.3e-08

TAIR|locus:2100083 AT3G09980 "AT3G09980" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 110/138 (79%), Positives = 118/138 (85%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+DEEMSR+AL+ FRA               VQA LGRVEEETKRLA IREELE LADPM
Sbjct:    40 KEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIREELEGLADPM 99

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGES 152
             RKEVA+VRKKIDSVNKELKPLGHT QKKEREYKEALEAFNEKN+EKVQLIT+LMELVGES
Sbjct:   100 RKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITRLMELVGES 159

Query:   153 EKLRMKKLEELSKSIDSI 170
             EK+RMKKLEELSK+IDSI
Sbjct:   160 EKMRMKKLEELSKNIDSI 177

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2044883 AT2G36410 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 102/141 (72%), Positives = 117/141 (82%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             ++DEEM+RSAL+ FRA               +QA LGRVE+ETKRL+TIREELE++ADPM
Sbjct:    55 REDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLSTIREELESMADPM 114

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLME---LV 149
             RKEV+VVRKKIDSVNKELKPLG T QKKEREYKEAL+ FNEKN+EKVQLITKLME   LV
Sbjct:   115 RKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMEMEQLV 174

Query:   150 GESEKLRMKKLEELSKSIDSI 170
             GESEKLRM KLEELSKSI+++
Sbjct:   175 GESEKLRMIKLEELSKSIETV 195

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2085231 AT3G52920 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 101/140 (72%), Positives = 114/140 (81%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+DEEM+RSAL+ FRA               V+A LGRVEEET+RLA+IREELE +ADPM
Sbjct:    26 KEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIREELETMADPM 85

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLME---LV 149
             RKEV  VRKKIDSVNKELKPLG T QKKEREYKEAL+ FNEKN+EKVQLITKLME   LV
Sbjct:    86 RKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITKLMEMGQLV 145

Query:   150 GESEKLRMKKLEELSKSIDS 169
             GESEKLR+KKL+ELS+SID+
Sbjct:   146 GESEKLRLKKLDELSRSIDT 165

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2144618 AT5G03660 "AT5G03660" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 93/136 (68%), Positives = 107/136 (78%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+D+E+S  AL+ F+A               VQA LGRVE+E+KRLA IREELE  ADPM
Sbjct:    34 KEDDELSMKALSAFKAKEEEIEKKKMEIRERVQAQLGRVEDESKRLAMIREELEGFADPM 93

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGES 152
             RKEV +VRKKIDS++KELKPLG+T QKKE EYK+ALEAFNEKNKEKV+LITKL EL GES
Sbjct:    94 RKEVTMVRKKIDSLDKELKPLGNTVQKKETEYKDALEAFNEKNKEKVELITKLQELEGES 153

Query:   153 EKLRMKKLEELSKSID 168
             EK R KKLEELSK+ID
Sbjct:   154 EKFRFKKLEELSKNID 169

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2041985 AT2G27740 "AT2G27740" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 81/134 (60%), Positives = 102/134 (76%)

Query:    35 DEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPMRK 94
             +EE+S+SA   F+A               VQ  LG  EE T+RLA IREELEAL DPMRK
Sbjct:    37 EEELSQSAFALFKAKEDEIERRKMEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRK 96

Query:    95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEK 154
             E++ +RK++D++N+ELKPLG +CQ+KERE+KEALEA+NEKNKEK   ++KL+ELV ESEK
Sbjct:    97 EISAIRKRVDAINRELKPLGQSCQRKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEK 156

Query:   155 LRMKKLEELSKSID 168
             LRM KLEELSKSI+
Sbjct:   157 LRMTKLEELSKSIE 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2085206 AT3G52900 "AT3G52900" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 70/138 (50%), Positives = 96/138 (69%)

Query:    34 DDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPMR 93
             ++EE+ + A+T F+A               VQ  LG  EE T+ L    EELE + DPMR
Sbjct:    27 EEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQRLGFAEEATRCLTQTLEELEIMGDPMR 86

Query:    94 KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESE 153
             KEV +VRKKID  N+++K L  +CQKKE+EYK+ LEAFNEKNKEK  L++ LMEL+ ESE
Sbjct:    87 KEVGMVRKKIDMANRDIKSLAQSCQKKEKEYKDTLEAFNEKNKEKAHLVSMLMELLAESE 146

Query:   154 KLRMKKLEELSKSIDSIQ 171
             +LR+KKLEE++K++ ++Q
Sbjct:   147 RLRIKKLEEINKTVGTLQ 164

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:1009023152 AT2G36355 "AT2G36355" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 62/108 (57%), Positives = 82/108 (75%)

Query:    64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKERE 123
             +Q  LG  EE T+ L    E LE + DPMRKEV +VRKKI+  N+E+K L  +CQKKERE
Sbjct:    48 IQQRLGFAEEATRSLTQTLEGLEIMGDPMRKEVGMVRKKIEMANREIKSLSQSCQKKERE 107

Query:   124 YKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
             YKE  EAF+EKNKEK  L++ LMEL+ ESE++R+KKLEE++K+I S++
Sbjct:   108 YKEIHEAFDEKNKEKAHLVSILMELLAESERVRVKKLEEINKTIGSLR 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1564990 Gorab "golgin, RAB6-interacting" [Rattus norvegicus (taxid:10116)]

 Score = 132 (51.5 bits), Expect = 4.3e-08, P = 4.3e-08
 Identities = 30/99 (30%), Positives = 52/99 (52%)

Query:    70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE 129
             R + ET +L  I++EL+AL D +  ++ ++R +ID  + E         + E EY  A  
Sbjct:   177 RTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLEYSYARKRFDRAEAEYVTAKL 236

Query:   130 AFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSID 168
                 K + K QL   L  ++ ++E  + +KLEEL + +D
Sbjct:   237 DLQRKTETKEQLTEHLCTIIQQNELRKAQKLEELMRQLD 275

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

UNIPROTKB|A5PKK7 GORAB "RAB6-interacting golgin" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 30/99 (30%), Positives = 52/99 (52%)

Query:    70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE 129
             R + ET +L  I++EL+AL D +  ++ ++R +ID  + +         + E EY  A  
Sbjct:   174 RTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYVTAKL 233

Query:   130 AFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSID 168
                 K + K QL   L  ++ ++E  + KKLEEL + +D
Sbjct:   234 ELQRKTELKEQLTEHLCTIIQQNELRKAKKLEELMQQLD 272

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1MBY2 GORAB "RAB6-interacting golgin" [Bos taurus (taxid:9913)]

 Score = 131 (51.2 bits), Expect = 6.3e-08, P = 6.3e-08
 Identities = 30/99 (30%), Positives = 52/99 (52%)

Query:    70 RVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALE 129
             R + ET +L  I++EL+AL D +  ++ ++R +ID  + +         + E EY  A  
Sbjct:   199 RTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYVTAKL 258

Query:   130 AFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSID 168
                 K + K QL   L  ++ ++E  + KKLEEL + +D
Sbjct:   259 ELQRKTELKEQLTEHLCTIIQQNELRKAKKLEELMQQLD 297

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022071001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (172 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam04949	160	pfam04949, Transcrip_act, Transcriptional activato	1e-60
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	8e-04

>gnl|CDD|191136 pfam04949, Transcrip_act, Transcriptional activator

 Score =  185 bits (470), Expect = 1e-60
 Identities = 118/158 (74%), Positives = 142/158 (89%), Gaps = 1/158 (0%)

Query: 14  QLMLQQSSGNLSFS-SSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           Q +  + SG++SF  S  + + DEE+SRSAL+ F+AKEEEIE++K+EVRE+VQA LGRVE
Sbjct: 3   QRLRVKHSGSISFGGSPMMDEKDEELSRSALSLFKAKEEEIERRKMEVRERVQAQLGRVE 62

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFN 132
           EETKRLA IREELE +ADPMRKEV+++RK+IDSVN+ELKPLG TCQKKE+EYKEALEA+N
Sbjct: 63  EETKRLAEIREELEGMADPMRKEVSMIRKRIDSVNRELKPLGQTCQKKEKEYKEALEAYN 122

Query: 133 EKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSI 170
           EKNKEK QL+TKLMELVGESEKLRMKKLEELSKSI+S+
Sbjct: 123 EKNKEKAQLVTKLMELVGESEKLRMKKLEELSKSIESL 160

This family of proteins may act as a transcriptional activator. It plays a role in stress response in plants. Length = 160

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 20/68 (29%), Positives = 29/68 (42%)

Query: 47  RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
           RA+    E    E  E         EE + RL T+ E + A+ D +R  +A  R  + S 
Sbjct: 881 RARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASG 940

Query: 107 NKELKPLG 114
            +EL  L 
Sbjct: 941 GRELPRLA 948

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	100.0
TIGR01837	118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	94.75
PF05597	132	Phasin: Poly(hydroxyalcanoate) granule associated	94.16
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	92.63
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.42
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	86.52
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	85.96
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.76
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	82.54
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	81.42
PF10186	302	Atg14: UV radiation resistance protein and autopha	81.07

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=100.00  E-value=5.9e-76  Score=472.19  Aligned_cols=154  Identities=79%  Similarity=1.092  Sum_probs=147.4

Q ss_pred             hhccCCCccccCCCCCCcc-hHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHH
Q 030728           16 MLQQSSGNLSFSSSNLSKD-DEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRK   94 (172)
Q Consensus        16 ~~~~~sg~~~~~~s~~~~e-~ee~srsals~F~aKEEEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RK   94 (172)
                      +..+++|+++++++++.++ +++|||||+|+|+|||++||||||+||+|||+|||||||+|||||+||+|||+|+|||||
T Consensus         5 ~~~~~~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~Rk   84 (159)
T PF04949_consen    5 LRVKNSGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRK   84 (159)
T ss_pred             hhcccCCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHH
Confidence            4456888888877666554 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhhh
Q 030728           95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKSIDS  169 (172)
Q Consensus        95 EV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsK~i~s  169 (172)
                      ||++||||||+|||+|||||++|||||+|||+||+||||||+||++||++||+||+||||+||||||||||+|++
T Consensus        85 Ev~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~ies  159 (159)
T PF04949_consen   85 EVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEIES  159 (159)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986

This entry represents proteins annotated as RAB6-interacting golgins.

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein

Probab=94.75  E-value=0.1  Score=39.58  Aligned_cols=62  Identities=23%  Similarity=0.417  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccch
Q 030728           51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG  114 (172)
Q Consensus        51 EEIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg  114 (172)
                      +++...--+|+++.+.+.+.+|.-..+  .+..=|..|+-|++.||..++.|||.+...|..|.
T Consensus        55 e~~~~~~~~~~~~~~~~~~~le~~~~~--~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~  116 (118)
T TIGR01837        55 EEVKTALEQTRDQVQRNWDKLEKAFDE--RVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR  116 (118)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444456666666666777665543  56778999999999999999999999998887664

This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.

>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material

Probab=94.16  E-value=0.21  Score=39.28  Aligned_cols=61  Identities=20%  Similarity=0.437  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccch
Q 030728           52 EIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG  114 (172)
Q Consensus        52 EIErkKmEVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg  114 (172)
                      .+...--.|++++..+++++|.--..  .+..-|..|+=|+|+||..++.|||.++++|.-|.
T Consensus        69 ~~~~~~~~~~~~~~~~~dklE~~fd~--rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~  129 (132)
T PF05597_consen   69 QVKSRVDDVKERATGQWDKLEQAFDE--RVARALNRLGVPSRKDVEALSARIDQLTAQVERLA  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            33344456667777777777654321  13445888999999999999999999999886553

PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=92.63  E-value=5  Score=37.58  Aligned_cols=72  Identities=19%  Similarity=0.310  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHHHHHHh
Q 030728           95 EVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSKS  166 (172)
Q Consensus        95 EV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsK~  166 (172)
                      ..+.++++|+.++++|+-+|....+-..+|.++.+-|+.-.+...+|....-.|..-=++++-++.+.+..+
T Consensus       952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~ 1023 (1164)
T TIGR02169       952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023 (1164)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999888899999999999999999999998887777776677766664444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.42  E-value=16  Score=34.06  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             hHHHHHHHHHHHHHhhh-HHHHhhHHHHHHHHhhhhh
Q 030728          135 NKEKVQLITKLMELVGE-SEKLRMKKLEELSKSIDSI  170 (172)
Q Consensus       135 nkEKa~LV~~LmELv~E-SErlRmkKLEELsK~i~sl  170 (172)
                      .........++.+++.+ -+.++-.+...|++.+...
T Consensus       478 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~  514 (650)
T TIGR03185       478 LERAITIADKAKKTLKEFREKLLERKLQQLEEEITKS  514 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555554443 4556667777777766543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=86.52  E-value=2.1  Score=31.90  Aligned_cols=53  Identities=28%  Similarity=0.488  Sum_probs=39.2

Q ss_pred             HHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhh
Q 030728           62 EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHT  116 (172)
Q Consensus        62 ekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~t  116 (172)
                      +.+.+--.++..-.+||+.+-.+++.|  |++.+|..++..|..++.+++-++..
T Consensus        35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~L--Pt~~dv~~L~l~l~el~G~~~~l~~~   87 (106)
T PF10805_consen   35 EDIEKLEERLDEHDRRLQALETKLEHL--PTRDDVHDLQLELAELRGELKELSAR   87 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            333334445556678999999999988  88999988888888888777655443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=85.96  E-value=9  Score=28.83  Aligned_cols=62  Identities=26%  Similarity=0.318  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHH
Q 030728           93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKL  155 (172)
Q Consensus        93 RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErl  155 (172)
                      ..++...|-.|-..-.+++.|...|+.|++.|..+...||.-. -++.|-...-+.=.+||.+
T Consensus        54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeSe~l  115 (150)
T PF07200_consen   54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEESEEL  115 (150)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence            4677778888888888999999999999999999999999864 3444444444444445444

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=85.76  E-value=22  Score=30.59  Aligned_cols=88  Identities=20%  Similarity=0.323  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHH
Q 030728           59 EVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEK  138 (172)
Q Consensus        59 EVrekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEK  138 (172)
                      ++..++.+....++.+..+|...-.|   +++-.+.++..+|..|..++-+|.-..+.-...+.+...--+..++.+.+|
T Consensus       177 ~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k  253 (325)
T PF08317_consen  177 ELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK  253 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566666666666666665555   555556888888888888888888777777777777777777777777777


Q ss_pred             HHHHHHHHHHh
Q 030728          139 VQLITKLMELV  149 (172)
Q Consensus       139 a~LV~~LmELv  149 (172)
                      ..+...+-++=
T Consensus       254 ~~l~~eI~e~~  264 (325)
T PF08317_consen  254 QELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHH
Confidence            77766665543

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=82.54  E-value=50  Score=32.89  Aligned_cols=116  Identities=35%  Similarity=0.518  Sum_probs=74.1

Q ss_pred             HHHHhhh----hhhHHHHHHHHHHH-------------HHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHH
Q 030728           40 RSALTTF----RAKEEEIEKKKLEV-------------REKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKK  102 (172)
Q Consensus        40 rsals~F----~aKEEEIErkKmEV-------------rekV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKk  102 (172)
                      |.=|.++    .|++.+.+.---+|             =+|-++++..+++|--|++-=-.+|-.+-|-.-.+|..+++|
T Consensus       321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k  400 (775)
T PF10174_consen  321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK  400 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444    56666555544433             345566666677776665543344444555555689999999


Q ss_pred             HhhhhhccccchhhHHhhHHHHH----------------HHHHHhhhhhHHHHHHHHHHHHHhhhHHHHhhHHHHH
Q 030728          103 IDSVNKELKPLGHTCQKKEREYK----------------EALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEE  162 (172)
Q Consensus       103 ID~vNreLKPLg~tcqKKEkEYK----------------eaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEE  162 (172)
                      ||.+...|+       .|++...                .|++.+.+-+.+|..++..|-++-..+++-+.--|+-
T Consensus       401 ie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~  469 (775)
T PF10174_consen  401 IENLEEQLR-------EKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELET  469 (775)
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998887775       3444443                4555566888999999999888877777666554443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=81.42  E-value=49  Score=33.57  Aligned_cols=53  Identities=19%  Similarity=0.304  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 030728           93 RKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKL  145 (172)
Q Consensus        93 RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~L  145 (172)
                      ..++...+..|..+..+|-||-+.-.+...+|.+.....+.+..+...-++.+
T Consensus       894 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1311)
T TIGR00606       894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI  946 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777777778888888877777777777776666666655544444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=81.07  E-value=26  Score=27.89  Aligned_cols=51  Identities=24%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             HHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhH
Q 030728           63 KVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTC  117 (172)
Q Consensus        63 kV~aqLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tc  117 (172)
                      .++..-..+++...|++.|+..++.    .++++..-|++|+.....|......-
T Consensus        57 ~~~~~~~~~~~~~~r~~~l~~~i~~----~~~~i~~~r~~l~~~~~~l~~~~~~l  107 (302)
T PF10186_consen   57 EIQQLKREIEELRERLERLRERIER----LRKRIEQKRERLEELRESLEQRRSRL  107 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445566777777777777765    46677777777777666666554443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 3/157 (1%)

Query: 17   LQQSSGNLSFSSSNLSKDDEEMSR--SALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEE 74
            ++     +   ++ L+K+ + +    S LTT  A+EEE  K   +++ K ++ +  +E  
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047

Query: 75   TKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEK 134
             K+    R+ELE +   +  E + + ++I  +  ++  L     KKE E + AL    ++
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107

Query: 135  NKEKVQLITKLMELVGESEKLRMKKLEELSKSIDSIQ 171
              +K   + K+ EL      L+ + LE    + +  +
Sbjct: 1108 TSQKNNALKKIRELESHISDLQ-EDLESEKAARNKAE 1143

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 4/143 (2%)

Query: 33   KDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETK---RLATIREELEALA 89
            +DD  +          + + +E++  ++   +     + +  TK   +  ++  ELE   
Sbjct: 989  EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048

Query: 90   DPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELV 149
                K    + K    +  E   L     + + +  E      +K +E    + +L +  
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108

Query: 150  GESEKLRMKKLEELSKSIDSIQN 172
             +      KK+ EL   I  +Q 
Sbjct: 1109 SQKNNAL-KKIRELESHISDLQE 1130

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 47   RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRK---EVAVVRKKI 103
            R+++ + EKKK++  +++     ++EEE      ++ E       ++K   ++ ++  + 
Sbjct: 942  RSQQLQAEKKKMQ--QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999

Query: 104  DSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEEL 163
            + + KE K L            E  E      K K +  + + EL    +K   K  +EL
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE-KSRQEL 1058

Query: 164  SKSIDSIQN 172
             K    ++ 
Sbjct: 1059 EKIKRKLEG 1067

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 3/136 (2%)

Query: 34   DDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMR 93
            D++     +L       E     + E        L   EEE K        L+     +R
Sbjct: 938  DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997

Query: 94   KEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESE 153
            KE+   + +  ++ +      H  ++   E KE       + +E   L  ++ +   E  
Sbjct: 998  KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE---LNRRIHDQAKEIT 1054

Query: 154  KLRMKKLEELSKSIDS 169
            +   KKL E +K ++ 
Sbjct: 1055 ETMEKKLVEETKQLEL 1070

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 3/138 (2%)

Query: 36  EEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKE 95
           + + R  L   + +    E K + +++ V+  L RV       A +  +        ++E
Sbjct: 846 QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE 905

Query: 96  VAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKL-MELVGESEK 154
           +  ++ +  SV +  K L    + K  + +  ++  N++ K  ++ +  L +    E+EK
Sbjct: 906 LKKLKIEARSVERYKK-LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 155 LRMKKLEELSKSIDSIQN 172
           LR   +E L  S +  +N
Sbjct: 965 LR-SDVERLRMSEEEAKN 981

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 47   RAKEEEIEKKKLEVR-EKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDS 105
              +  +     LE +  ++Q  +    +E K L      LE       +++    +++  
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974

Query: 106  VNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEELSK 165
              +E K   +     + E  +  +  ++   EK  +     +   E+E+L  +  E+ + 
Sbjct: 975  SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 10/115 (8%)

Query: 49  KEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNK 108
           +     K       +    +  V+ + K L     E ++L      +       + S+  
Sbjct: 891 ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSD-------LLSILA 943

Query: 109 ELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLMELVGESEKLRMKKLEEL 163
           +L            E  E  + F  +    V+   +  +    +E  R++K+E+L
Sbjct: 944 QLT---ELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 41/167 (24%)

Query: 32  SKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLG----RVEEETKRLATIREELEA 87
           SKD    +     T  +K+EE+ +K +E  E ++ +       ++ E ++ + +      
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 88  LADPMRKEVAVVRK----------KIDSVNKELKP-----------LGHTCQKKE--REY 124
             D +  +  V  K          K+     EL+P            G T    +    Y
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 125 KEALEAFNEKNKEKVQLITKLMELVGE--SEKLRMKKLEELSKSIDS 169
           K        K   K+  +      +    S +  ++ L++L   ID 
Sbjct: 175 K-----VQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDP 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.89
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	84.51

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.24  E-value=6.9  Score=32.97  Aligned_cols=23  Identities=9%  Similarity=0.115  Sum_probs=9.6

Q ss_pred             HHHhccchhHHHHHHHHHHHhhh
Q 030728           84 ELEALADPMRKEVAVVRKKIDSV  106 (172)
Q Consensus        84 ELE~~aDP~RKEV~~vRKkID~v  106 (172)
                      .+....|.+.+....+.+-+..+
T Consensus       492 ~~~~~~~~~~~~~~~l~~~~~~~  514 (597)
T 3oja_B          492 RYRLPKDGLARSSDNLNKVFTHL  514 (597)
T ss_dssp             HTTCCCCSSSCHHHHHHHHHHHH
T ss_pred             hcCccccccCCHHHHHHHHHHHH
Confidence            33344444444444444444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.89  E-value=2  Score=36.28  Aligned_cols=35  Identities=26%  Similarity=0.194  Sum_probs=14.6

Q ss_pred             hhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHH
Q 030728          105 SVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKV  139 (172)
Q Consensus       105 ~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa  139 (172)
                      .+.++++-+.+-=++.++++.....++++++++..
T Consensus       506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (597)
T 3oja_B          506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETE  540 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence            33333333444444444444444444444444433

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=84.51  E-value=10  Score=28.00  Aligned_cols=29  Identities=14%  Similarity=0.275  Sum_probs=16.0

Q ss_pred             HHHHHHHhccchhHHHHHHHHHHHhhhhh
Q 030728           80 TIREELEALADPMRKEVAVVRKKIDSVNK  108 (172)
Q Consensus        80 ~IreELE~~aDP~RKEV~~vRKkID~vNr  108 (172)
                      .++++|+.+.+-+.+=+..++++|..+..
T Consensus        46 ~~~~~i~~l~~~i~~~~~~~~~~lk~l~~   74 (196)
T 1fio_A           46 HLRHSLDNFVAQATDLQFKLKNEIKSAQR   74 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35555555555555555555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	83.2

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.20  E-value=4.7  Score=26.84  Aligned_cols=89  Identities=9%  Similarity=0.183  Sum_probs=45.3

Q ss_pred             HhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhhccccchhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 030728           67 HLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKEREYKEALEAFNEKNKEKVQLITKLM  146 (172)
Q Consensus        67 qLGRvEeetkrLa~IreELE~~aDP~RKEV~~vRKkID~vNreLKPLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~Lm  146 (172)
                      .|-.+.....+|..+...+  ++.+...+...++..|+.+..++.-+.+.|...-+..+..-..-+.+.--...|.+.|.
T Consensus        17 ~i~~i~~~i~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~   94 (196)
T d1fioa_          17 DLDKYDHTINQVDSLHKRL--LTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFL   94 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence            3333444444444444433  23445556666777777777777777777765544443322222222233445555555


Q ss_pred             HHhhhHHHHhh
Q 030728          147 ELVGESEKLRM  157 (172)
Q Consensus       147 ELv~ESErlRm  157 (172)
                      +++..--..-.
T Consensus        95 ~~~~~f~~~q~  105 (196)
T d1fioa_          95 KLIQDYRIVDS  105 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555444333