Citrus Sinensis ID: 030780
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 171 | ||||||
| 255540991 | 171 | Protein HVA22, putative [Ricinus communi | 0.929 | 0.929 | 0.856 | 8e-77 | |
| 388496132 | 169 | unknown [Lotus japonicus] | 0.970 | 0.982 | 0.783 | 4e-74 | |
| 351727014 | 170 | uncharacterized protein LOC100306331 [Gl | 0.994 | 1.0 | 0.777 | 7e-74 | |
| 388504736 | 169 | unknown [Lotus japonicus] | 0.970 | 0.982 | 0.777 | 1e-73 | |
| 15221266 | 177 | HVA22-like protein a [Arabidopsis thalia | 1.0 | 0.966 | 0.742 | 7e-73 | |
| 297842201 | 176 | hypothetical protein ARALYDRAFT_476588 [ | 0.970 | 0.943 | 0.754 | 1e-72 | |
| 356562824 | 170 | PREDICTED: HVA22-like protein a-like [Gl | 0.994 | 1.0 | 0.760 | 1e-72 | |
| 225456735 | 167 | PREDICTED: HVA22-like protein a [Vitis v | 0.929 | 0.952 | 0.786 | 1e-71 | |
| 449477281 | 185 | PREDICTED: HVA22-like protein a-like iso | 0.964 | 0.891 | 0.757 | 2e-71 | |
| 224119096 | 169 | predicted protein [Populus trichocarpa] | 0.929 | 0.940 | 0.812 | 2e-71 |
| >gi|255540991|ref|XP_002511560.1| Protein HVA22, putative [Ricinus communis] gi|223550675|gb|EEF52162.1| Protein HVA22, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 291 bits (744), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 137/160 (85%), Positives = 152/160 (95%), Gaps = 1/160 (0%)
Query: 1 MGSGAGSFLKVLLKNFDVLAGPVVSLVYPLYASVRAIETKSPTDDRQWLTYWILYSMITL 60
MGSGAGSFLK+LLKNFDVLAGPVVSLVYPLYAS+RAIETKSP DD+QWLTYW+LYSMITL
Sbjct: 1 MGSGAGSFLKILLKNFDVLAGPVVSLVYPLYASIRAIETKSPIDDQQWLTYWVLYSMITL 60
Query: 61 VELTFAKVIEWIPIWSYAKLIFTCWLVIPQFSGAAYVYEHYLRPFFLNP-QTINIWYVPR 119
ELTFAKVIEWIPIWSYAKLI TCWLVIP FSGAAYVYEH++RP F+NP QTIN+WYVPR
Sbjct: 61 FELTFAKVIEWIPIWSYAKLIVTCWLVIPYFSGAAYVYEHFVRPLFVNPQQTINVWYVPR 120
Query: 120 KKDVFSRPDDILTAAEKYMEENGTDAFEKLIHRADKSKRN 159
KKD+FS+ DDILTAAE+Y+EENGT+AFEKLIHRADKS+ +
Sbjct: 121 KKDIFSKKDDILTAAERYIEENGTEAFEKLIHRADKSRSS 160
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388496132|gb|AFK36132.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|351727014|ref|NP_001237146.1| uncharacterized protein LOC100306331 [Glycine max] gi|255628223|gb|ACU14456.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|388504736|gb|AFK40434.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|15221266|ref|NP_177592.1| HVA22-like protein a [Arabidopsis thaliana] gi|57012625|sp|Q9S7V4.1|HA22A_ARATH RecName: Full=HVA22-like protein a; Short=AtHVA22a gi|4884944|gb|AAD31885.1|AF141977_1 AtHVA22a [Arabidopsis thaliana] gi|12324799|gb|AAG52361.1|AC011765_13 AtHVA22a; 65476-64429 [Arabidopsis thaliana] gi|4884932|gb|AAD31879.1| AtHVA22a [Arabidopsis thaliana] gi|26452664|dbj|BAC43415.1| putative AtHVA22a [Arabidopsis thaliana] gi|28973175|gb|AAO63912.1| putative AtHVA22a protein [Arabidopsis thaliana] gi|332197482|gb|AEE35603.1| HVA22-like protein a [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297842201|ref|XP_002888982.1| hypothetical protein ARALYDRAFT_476588 [Arabidopsis lyrata subsp. lyrata] gi|297334823|gb|EFH65241.1| hypothetical protein ARALYDRAFT_476588 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356562824|ref|XP_003549668.1| PREDICTED: HVA22-like protein a-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225456735|ref|XP_002275428.1| PREDICTED: HVA22-like protein a [Vitis vinifera] gi|147835139|emb|CAN76903.1| hypothetical protein VITISV_016346 [Vitis vinifera] gi|297733995|emb|CBI15242.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449477281|ref|XP_004154980.1| PREDICTED: HVA22-like protein a-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224119096|ref|XP_002317984.1| predicted protein [Populus trichocarpa] gi|118488636|gb|ABK96130.1| unknown [Populus trichocarpa] gi|222858657|gb|EEE96204.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 171 | ||||||
| TAIR|locus:2019225 | 177 | HVA22A "AT1G74520" [Arabidopsi | 1.0 | 0.966 | 0.742 | 2.3e-71 | |
| TAIR|locus:2205055 | 184 | HVA22C "AT1G69700" [Arabidopsi | 0.912 | 0.847 | 0.602 | 8.3e-51 | |
| TAIR|locus:2154139 | 167 | HVA22B "AT5G62490" [Arabidopsi | 0.970 | 0.994 | 0.552 | 8.5e-49 | |
| TAIR|locus:2052339 | 158 | HVA22F "AT2G42820" [Arabidopsi | 0.894 | 0.968 | 0.423 | 6e-32 | |
| TAIR|locus:2163290 | 116 | HVA22E "AT5G50720" [Arabidopsi | 0.514 | 0.758 | 0.625 | 7.3e-27 | |
| TAIR|locus:2117318 | 135 | HVA22D "AT4G24960" [Arabidopsi | 0.508 | 0.644 | 0.563 | 2.9e-25 | |
| POMBASE|SPCC830.08c | 182 | yop1 "ER membrane protein DP1/ | 0.649 | 0.609 | 0.327 | 3.7e-16 | |
| ZFIN|ZDB-GENE-040912-98 | 208 | reep6 "receptor accessory prot | 0.578 | 0.475 | 0.375 | 1.3e-15 | |
| WB|WBGene00022127 | 183 | yop-1 [Caenorhabditis elegans | 0.473 | 0.442 | 0.370 | 5.4e-15 | |
| GENEDB_PFALCIPARUM|PFC0730w | 221 | PFC0730w "conserved protein, p | 0.497 | 0.384 | 0.364 | 6.9e-15 |
| TAIR|locus:2019225 HVA22A "AT1G74520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 127/171 (74%), Positives = 152/171 (88%)
Query: 1 MGSGAGSFLKVLLKNFDVLAGPVVSLVYPLYASVRAIETKSPTDDRQWLTYWILYSMITL 60
MGSGAG+FLKVLL+NFDVLAGPVVSLVYPLYASV+AIET+S DD+QWLTYW+LYS++TL
Sbjct: 1 MGSGAGNFLKVLLRNFDVLAGPVVSLVYPLYASVQAIETQSHADDKQWLTYWVLYSLLTL 60
Query: 61 VELTFAKVIEWIPIWSYAKLIFTCWLVIPQFSGAAYVYEHYLRPFFLNPQTINIWYVPRK 120
+ELTFAK+IEW+PIWSY KLI TCWLVIP FSGAAYVYEH++RP F+NP++INIWYVP+K
Sbjct: 61 IELTFAKLIEWLPIWSYMKLILTCWLVIPYFSGAAYVYEHFVRPVFVNPRSINIWYVPKK 120
Query: 121 KDVFSRPDDILTAAEKYMEENGTDAFEKLIHRADKSKRNYDHSTYEYDNVY 171
D+F +PDD+LTAAEKY+ ENG DAFEK++ RADKSKR H Y+ +Y
Sbjct: 121 MDIFRKPDDVLTAAEKYIAENGPDAFEKILSRADKSKRYNKHEYESYETMY 171
|
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| TAIR|locus:2205055 HVA22C "AT1G69700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2154139 HVA22B "AT5G62490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2052339 HVA22F "AT2G42820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2163290 HVA22E "AT5G50720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2117318 HVA22D "AT4G24960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| POMBASE|SPCC830.08c yop1 "ER membrane protein DP1/Yop1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040912-98 reep6 "receptor accessory protein 6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| WB|WBGene00022127 yop-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| GENEDB_PFALCIPARUM|PFC0730w PFC0730w "conserved protein, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 171 | |||
| pfam03134 | 94 | pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family | 4e-37 | |
| COG5052 | 186 | COG5052, YOP1, Protein involved in membrane traffi | 3e-20 |
| >gnl|CDD|217381 pfam03134, TB2_DP1_HVA22, TB2/DP1, HVA22 family | Back alignment and domain information |
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Score = 122 bits (309), Expect = 4e-37
Identities = 38/88 (43%), Positives = 58/88 (65%)
Query: 19 LAGPVVSLVYPLYASVRAIETKSPTDDRQWLTYWILYSMITLVELTFAKVIEWIPIWSYA 78
L ++ +YP YAS +A+E+K DD QWLTYW++YS +TL E ++ WIP +
Sbjct: 7 LLSNLIGFLYPAYASYKALESKDKEDDTQWLTYWVVYSFLTLFESFSDIILSWIPFYYEL 66
Query: 79 KLIFTCWLVIPQFSGAAYVYEHYLRPFF 106
KL+F WLV+P+ GA+Y+Y+ ++RP
Sbjct: 67 KLLFLVWLVLPKTQGASYIYDKFIRPLL 94
|
This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein, which in humans is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein, which is thought to be a regulatory protein. Length = 94 |
| >gnl|CDD|227385 COG5052, YOP1, Protein involved in membrane traffic [Intracellular trafficking and secretion] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 171 | |||
| KOG1725 | 186 | consensus Protein involved in membrane traffic (YO | 99.98 | |
| PF03134 | 94 | TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IP | 99.97 | |
| KOG1726 | 225 | consensus HVA22/DP1 gene product-related proteins | 99.96 | |
| COG5052 | 186 | YOP1 Protein involved in membrane traffic [Intrace | 99.85 | |
| KOG1726 | 225 | consensus HVA22/DP1 gene product-related proteins | 82.83 |
| >KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
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Probab=99.98 E-value=2.9e-33 Score=226.61 Aligned_cols=104 Identities=49% Similarity=0.957 Sum_probs=100.1
Q ss_pred HHHHHHHhchhhhHhHHHhHhhHHHHHHHhhcCChhhhhhHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHhh
Q 030780 8 FLKVLLKNFDVLAGPVVSLVYPLYASVRAIETKSPTDDRQWLTYWILYSMITLVELTFAKVIEWIPIWSYAKLIFTCWLV 87 (171)
Q Consensus 8 ~~~~~~~~~~~l~~~~ig~lYPayaS~kal~s~~~~d~~~WL~YWvvy~~~~~~E~~~~~il~wiPfY~~~Kl~fl~wL~ 87 (171)
.+.++++++..++|+++|++||+|+|++|||++++.||+|||+||++||+++++|.+...+++|+|+|+++|++|++||+
T Consensus 49 ~v~l~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~ 128 (186)
T KOG1725|consen 49 AVYLLFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLV 128 (186)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHhhcccccCccc
Q 030780 88 IPQFSGAAYVYEHYLRPFFLNPQT 111 (171)
Q Consensus 88 ~P~~~GA~~iY~~~i~P~l~~~~~ 111 (171)
+|+++||..+|++++||++.+++.
T Consensus 129 lP~~~Ga~~iY~~~vrp~~~~~~~ 152 (186)
T KOG1725|consen 129 LPQFNGAAIIYNHIVRPFFLKHSR 152 (186)
T ss_pred ccCCCCceeeechhhhhhhhhhhh
Confidence 999999999999999999988873
|
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| >PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes | Back alignment and domain information |
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| >KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms] | Back alignment and domain information |
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| >COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion] | Back alignment and domain information |
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| >KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00