Citrus Sinensis ID: 030789

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAALQ
Secondary Structure (PSIPRED)
cccEEcccccccccccccccccccccccccccccccccccEEccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccEEEccccHHHHHHHHHcccHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHHHccHHHHHHcccccc
Coil and Loop (DISEMBL)
mstsidllsfspppssmlsrtqfsfthkptfllsskkeSFFTLRASAadngagvsapavtveepkvreasegptesngaveapevkavnkfedpkwvngtwdlkqfqkngqtdwDAVIDAEARRRKwlenspesssnddpvifdtsivpwwawikrfhlpeaellngaalq
Flexible Loop (DISEMBL)
mstsidllsfspppssMLSRTQFSFTHKPTFLLSSKKESFFTLRASAAdngagvsapavtveepkvreasegptesngaveapevkavNKFEDPKWVNGTWDLKQfqkngqtdwDAVIDAEARRRKWlenspesssnddpviFDTSIVPWWAWIKRFHLPEAELLNGAALQ
Low Complexity Region (SEG)
MSTSIDllsfspppssmlsRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAALQ
Disordered region (IsUnstruct)
***************************************************************************************VNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEA******************VIFDTSIVPWWAWIKRFHLPEAELL******
Disordered Region (DISOPRED)
********************************LSS*******************************************************FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG****
Disordered Region (DISEMBL)
*********FSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVE*****************VEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKW**********DDPVIFDTSIVPWWAWIKRFHLPEAELLNGAALQ
Disordered Region (DISPRO)
******************************************************************************************FEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAALQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
359495735	251	PREDICTED: uncharacterized protein LOC10	0.935	0.637	0.614	2e-48
255566759	259	transcription factor, putative [Ricinus	0.964	0.637	0.592	4e-47
224137948	257	light harvesting-like protein 3 [Populus	0.918	0.610	0.587	5e-46
224126625	258	light harvesting-like protein 3 [Populus	0.970	0.643	0.563	8e-46
356563395	264	PREDICTED: uncharacterized protein LOC10	0.970	0.628	0.560	1e-44
449459006	266	PREDICTED: uncharacterized protein LOC10	0.947	0.609	0.574	2e-42
297745675	227	unnamed protein product [Vitis vinifera]	0.830	0.625	0.580	5e-42
356510909	264	PREDICTED: uncharacterized protein LOC10	0.970	0.628	0.565	9e-42
2245118	350	hypothetical protein [Arabidopsis thalia	0.929	0.454	0.528	3e-40
18414927	262	chlorophyll A-B binding protein [Arabido	0.929	0.606	0.528	6e-40

>gi|359495735|ref|XP_003635074.1| PREDICTED: uncharacterized protein LOC100855146 [Vitis vinifera]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 119/166 (71%), Gaps = 6/166 (3%)

Query: 10  FSPPPSSMLSRT--QFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVE----E 63
           FSPP  + L     + +FT KP+  L SKK     L A A +NGAG S  A TVE    E
Sbjct: 6   FSPPIPTHLPTLSPKPNFTLKPSLFLRSKKHQLLLLSAKATENGAGTSTSATTVEPEKAE 65

Query: 64  PKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEAR 123
            K  EA+   ++ NGA  A +V  V KFED KWV GTWDLKQF+ +G+T+WDAVIDAE R
Sbjct: 66  EKAPEAAVLDSQPNGAAAAGDVVLVTKFEDLKWVGGTWDLKQFETDGKTNWDAVIDAEVR 125

Query: 124 RRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
           RRKWLE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNG A
Sbjct: 126 RRKWLEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRA 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566759|ref|XP_002524363.1| transcription factor, putative [Ricinus communis] gi|223536324|gb|EEF37974.1| transcription factor, putative [Ricinus communis]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 106/179 (59%), Positives = 126/179 (70%), Gaps = 14/179 (7%)

Query: 4   SIDLLSFSPPPSSMLSRTQFSFTH---KPTFLLSSKKESF-FTLRASAADNGAGVSAPAV 59
           SI +  FSPPP+  L R+  S  H   KPT  L+     F F+   ++ DNGAG+SA A 
Sbjct: 2   SISMALFSPPPTQFL-RSLSSKPHLLTKPTSFLTPINPPFLFSAPKASTDNGAGISAAAA 60

Query: 60  TVEEPKVRE---------ASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNG 110
            VEEPK  E         A E    SNGAV+  EVK  +KF DP+W+ GTWDLKQFQK+G
Sbjct: 61  AVEEPKEAEPKAAEPSPAAVESSLGSNGAVKDAEVKLESKFVDPRWIGGTWDLKQFQKDG 120

Query: 111 QTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
            TDWD+VIDAE RRRKWLE++PESS+NDDPV+FDTSI+PWWAW+KRFHLPEAELLNG A
Sbjct: 121 STDWDSVIDAEVRRRKWLESNPESSTNDDPVVFDTSIIPWWAWMKRFHLPEAELLNGRA 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137948|ref|XP_002326480.1| light harvesting-like protein 3 [Populus trichocarpa] gi|118482026|gb|ABK92944.1| unknown [Populus trichocarpa] gi|222833802|gb|EEE72279.1| light harvesting-like protein 3 [Populus trichocarpa]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 107/182 (58%), Positives = 128/182 (70%), Gaps = 25/182 (13%)

Query: 8   LSFSPPPSSMLSRTQFSFT------HKPTFLLSSKKESFF--TLRASAADNGAGVSAPAV 59
           +S  PPP   L+R   SF+       KPT  L      F   T +AS  D GAGVSA + 
Sbjct: 1   MSLFPPP---LTRLPLSFSSKHHIIFKPTLSLRPTSPPFLLSTSKASTDDGGAGVSASSA 57

Query: 60  TVEEPKVREASEGPTES--------NGAVEAP----EVKAVNKFEDPKWVNGTWDLKQFQ 107
           TVEEPK+ + +   +ES        NGAV AP    EV+ V+KFEDP+W++GTWDLKQF+
Sbjct: 58  TVEEPKLEQKAPDSSESVPVAEKNSNGAV-APGGGVEVE-VSKFEDPRWISGTWDLKQFE 115

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           K+G+TDWDAVIDAE RRRKWLE +PESSSNDDPV+FDTSI+PWWAW+KRFHLPEAELLNG
Sbjct: 116 KDGKTDWDAVIDAEVRRRKWLEGNPESSSNDDPVVFDTSIIPWWAWMKRFHLPEAELLNG 175

Query: 168 AA 169
            A
Sbjct: 176 RA 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126625|ref|XP_002329601.1| light harvesting-like protein 3 [Populus trichocarpa] gi|222870310|gb|EEF07441.1| light harvesting-like protein 3 [Populus trichocarpa]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 102/181 (56%), Positives = 126/181 (69%), Gaps = 15/181 (8%)

Query: 1   MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKESFF--TLRASAADNGAGVSAPA 58
           MS S+ L S   PP +    ++  FT+K T  L      F   T +AS  + GAGVSA A
Sbjct: 1   MSISMSLFS---PPLTRFPPSKPHFTYKSTLSLGPTNRPFLLSTPKASTDNGGAGVSASA 57

Query: 59  VTVEEPKVREASEGPTES--------NGAVEA--PEVKAVNKFEDPKWVNGTWDLKQFQK 108
            TVEEPK+ + +   ++S        NGAV A   E   V+KF DP+W++GTWDLKQFQK
Sbjct: 58  ATVEEPKLEQKTPESSDSVPVAKNSSNGAVAAGGEEKVEVSKFGDPRWISGTWDLKQFQK 117

Query: 109 NGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGA 168
           +G+TDWDAVIDAEARRRKWL+ +PESSSN+DPV+FDTSI+PWW W+KRFHLPEAELLNG 
Sbjct: 118 DGKTDWDAVIDAEARRRKWLQCNPESSSNNDPVVFDTSIIPWWTWMKRFHLPEAELLNGR 177

Query: 169 A 169
           A
Sbjct: 178 A 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563395|ref|XP_003549949.1| PREDICTED: uncharacterized protein LOC100780555 [Glycine max]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/182 (56%), Positives = 125/182 (68%), Gaps = 16/182 (8%)

Query: 2   STSIDLLSFSPP------PSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVS 55
           S S  + SFSPP      PSS  S+ +  + +   F L SK  +F  L+A+AA+NG G +
Sbjct: 5   SMSTTMASFSPPTHFSAAPSS--SKLRLVYKNNNFFSLRSKSLAFSPLKAAAAENGVGTA 62

Query: 56  A-----PAVTVEE---PKVREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
                  AV+V E   P V  +      +  AVE+ EVK    F DP+WV+GTWDLKQFQ
Sbjct: 63  VEPPPEQAVSVPELPPPAVGNSVGTNGSAAVAVESEEVKVKTGFVDPRWVSGTWDLKQFQ 122

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           KNG TDWDAVIDAEARRRKWLE++PESSSN++PV+FDTSI+PWWAW+KRFHLPEAELLNG
Sbjct: 123 KNGTTDWDAVIDAEARRRKWLEDNPESSSNENPVVFDTSIIPWWAWMKRFHLPEAELLNG 182

Query: 168 AA 169
            A
Sbjct: 183 RA 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459006|ref|XP_004147237.1| PREDICTED: uncharacterized protein LOC101206464 [Cucumis sativus] gi|449510491|ref|XP_004163681.1| PREDICTED: uncharacterized LOC101206464 [Cucumis sativus]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/188 (57%), Positives = 126/188 (67%), Gaps = 26/188 (13%)

Query: 1   MSTSIDLLSFSPPPSSMLSRTQFSFTHKPTFLLSSKK-----ESFFTLRASAADNGAGVS 55
            S S  L +FSP   +    T FSF  +P   L ++       S FT+RA+A DNGAG+S
Sbjct: 7   FSPSSHLSTFSPSHHT----THFSF--RPFSSLRTRNPSSSSSSLFTIRATA-DNGAGIS 59

Query: 56  APA--VTVEEPKVR----------EASEGPTESNGAVEAPEVKAV--NKFEDPKWVNGTW 101
             +  V+VE P  +          E  E    +NG+V A E      +KFEDPKWVNGTW
Sbjct: 60  GGSATVSVETPVEQKDPEPAKLAPEEQESLAGTNGSVAAAEEVVEVVSKFEDPKWVNGTW 119

Query: 102 DLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPE 161
           DL QFQKNG TDWDAVIDAEARRRKWLEN+PESSSN+DPV+FDTSIVPWWAWIKR+HLPE
Sbjct: 120 DLNQFQKNGSTDWDAVIDAEARRRKWLENNPESSSNEDPVVFDTSIVPWWAWIKRYHLPE 179

Query: 162 AELLNGAA 169
           AELLNG A
Sbjct: 180 AELLNGRA 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745675|emb|CBI40929.3| unnamed protein product [Vitis vinifera]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 108/162 (66%), Gaps = 20/162 (12%)

Query: 10  FSPPPSSMLSRT--QFSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPAVTVEEPKVR 67
           FSPP  + L     + +FT KP+  L SKK     L A A +NGAG S  A TVE  K  
Sbjct: 4   FSPPIPTHLPTLSPKPNFTLKPSLFLRSKKHQLLLLSAKATENGAGTSTSATTVEPEKAE 63

Query: 68  EASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKW 127
           E            +APE        D KWV GTWDLKQF+ +G+T+WDAVIDAE RRRKW
Sbjct: 64  E------------KAPEAA------DLKWVGGTWDLKQFETDGKTNWDAVIDAEVRRRKW 105

Query: 128 LENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
           LE++PESSSNDDPV+FDTSI+PWWAWIKRFHLPEAELLNG A
Sbjct: 106 LEDNPESSSNDDPVVFDTSIIPWWAWIKRFHLPEAELLNGRA 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510909|ref|XP_003524176.1| PREDICTED: uncharacterized protein LOC100789538 [Glycine max]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 124/182 (68%), Gaps = 16/182 (8%)

Query: 2   STSIDLLSFSPP------PSSMLSRTQFSFTHKPTFLLSSKKESFFTLRASAADNGAGVS 55
           S S  + SFSPP      PSS  S+ +  + +   F L S+  S   L+A+A++NG G +
Sbjct: 5   SMSTTMASFSPPTHFSATPSS--SKPRLVYKNNFFFSLRSRSLSLSPLKAAASENGVGTA 62

Query: 56  A-----PAVTVEEPK---VREASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQ 107
                  AV V EP    V  +S G   S  AVE+  VK  + F DP+WV GTWDLKQFQ
Sbjct: 63  VEPPPEQAVPVPEPSLPPVDNSSVGTNGSAVAVESEVVKVQSSFVDPRWVAGTWDLKQFQ 122

Query: 108 KNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNG 167
           KNG TDWDAVIDAEARRRKWLE++PESSSN++PV+FDTSIVPWWAW+KRFHLPEAELLNG
Sbjct: 123 KNGTTDWDAVIDAEARRRKWLEDNPESSSNENPVVFDTSIVPWWAWMKRFHLPEAELLNG 182

Query: 168 AA 169
            A
Sbjct: 183 RA 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2245118|emb|CAB10540.1| hypothetical protein [Arabidopsis thaliana] gi|7268512|emb|CAB78763.1| hypothetical protein [Arabidopsis thaliana]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 124/178 (69%), Gaps = 19/178 (10%)

Query: 10  FSPPPSSMLSRTQFSFTHKPTF-LLSSKKESFFTLRASAADNGAGVSAPAVTVEEPK--- 65
           FSPP SS  S    +F  K +F LLSS + S  ++  +++D+G+     AV+VE P+   
Sbjct: 4   FSPPISSS-SLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVE 62

Query: 66  --VRE---------ASEGPTESNGAVEAPEVK---AVNKFEDPKWVNGTWDLKQFQKNGQ 111
             V+E           E  T  N AVE  E+K   +V KF+D +W+NGTWDLKQF+K+G+
Sbjct: 63  VIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGK 122

Query: 112 TDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
           TDWD+VI AEA+RRKWLE +PE++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNG A
Sbjct: 123 TDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414927|ref|NP_567532.1| chlorophyll A-B binding protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780.1|AF134133_1 Lil3 protein [Arabidopsis thaliana] gi|14030673|gb|AAK53011.1|AF375427_1 AT4g17600/dl4835w [Arabidopsis thaliana] gi|18491101|gb|AAL69517.1| AT4g17600/dl4835w [Arabidopsis thaliana] gi|22530970|gb|AAM96989.1| Lil3 protein [Arabidopsis thaliana] gi|23198388|gb|AAN15721.1| Lil3 protein [Arabidopsis thaliana] gi|23306350|gb|AAN17402.1| Lil3 protein [Arabidopsis thaliana] gi|25084208|gb|AAN72196.1| Lil3 protein [Arabidopsis thaliana] gi|332658519|gb|AEE83919.1| chlorophyll A-B binding protein [Arabidopsis thaliana]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/178 (52%), Positives = 124/178 (69%), Gaps = 19/178 (10%)

Query: 10  FSPPPSSMLSRTQFSFTHKPTF-LLSSKKESFFTLRASAADNGAGVSAPAVTVEEPK--- 65
           FSPP SS  S    +F  K +F LLSS + S  ++  +++D+G+     AV+VE P+   
Sbjct: 4   FSPPISSS-SLQNPNFIPKFSFSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVE 62

Query: 66  --VRE---------ASEGPTESNGAVEAPEVK---AVNKFEDPKWVNGTWDLKQFQKNGQ 111
             V+E           E  T  N AVE  E+K   +V KF+D +W+NGTWDLKQF+K+G+
Sbjct: 63  VIVKEPPQSTPAVKKEETATAKNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGK 122

Query: 112 TDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
           TDWD+VI AEA+RRKWLE +PE++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNG A
Sbjct: 123 TDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2151972	258	LIL3:2 "AT5G47110" [Arabidopsi	0.818	0.542	0.549	3.7e-39
TAIR|locus:2129296	262	LIL3:1 [Arabidopsis thaliana (	0.859	0.561	0.522	1.1e-37

TAIR|locus:2151972 LIL3:2 "AT5G47110" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 83/151 (54%), Positives = 114/151 (75%)

Query:    30 TFLLSSKKESFFTLRASAADNGAG-----VSAPA-VTVEEPKVREASEGPTES-NGAV-- 80
             T LLS+K+ S  ++  +++DNG       +  PA V VEE  V+  +E  + S NGAV  
Sbjct:    27 TSLLSTKRFSLISVPRASSDNGTTSPVVEIPKPASVAVEEVPVKSPAESSSASENGAVGG 86

Query:    81 EAPE--VKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSND 138
             EA +   + V K+++ KWVNGTWDLKQF+K+G+TDWD+VI +EA+RRKWLE++PE++SND
Sbjct:    87 EATDSSTETVIKYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSND 146

Query:   139 DPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
             + V+FDTSI+PWWAW+KR+HLPEAELLNG A
Sbjct:   147 ELVVFDTSIIPWWAWMKRYHLPEAELLNGRA 177

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009765 "photosynthesis, light harvesting" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2129296 LIL3:1 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 82/157 (52%), Positives = 105/157 (66%)

Query:    23 FSFTHKPTFLLSSKKESFFTLRASAADNGAGVSAPA---VTVEEPKVR----EASEGPTE 75
             FS      F L S   +     +++      V AP    V V+EP       +  E  T 
Sbjct:    24 FSLLSSNRFSLLSVTRASSDSGSTSPTAAVSVEAPEPVEVIVKEPPQSTPAVKKEETATA 83

Query:    76 SNGAVEAPEVK---AVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSP 132
              N AVE  E+K   +V KF+D +W+NGTWDLKQF+K+G+TDWD+VI AEA+RRKWLE +P
Sbjct:    84 KNVAVEGEEMKTTESVVKFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENP 143

Query:   133 ESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
             E++SND+PV+FDTSI+PWWAWIKR+HLPEAELLNG A
Sbjct:   144 ETTSNDEPVLFDTSIIPWWAWIKRYHLPEAELLNGRA 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.127   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       158   0.00085  106 3  11 23  0.43    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.04u 0.09s 17.13t   Elapsed:  00:00:01
  Total cpu time:  17.04u 0.09s 17.13t   Elapsed:  00:00:01
  Start:  Thu May  9 21:28:03 2013   End:  Thu May  9 21:28:04 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
PLN00014	250	PLN00014, PLN00014, light-harvesting-like protein	3e-57

>gnl|CDD|177653 PLN00014, PLN00014, light-harvesting-like protein 3; Provisional

 Score =  179 bits (456), Expect = 3e-57
 Identities = 79/167 (47%), Positives = 106/167 (63%), Gaps = 4/167 (2%)

Query: 7   LLSFSPPPSSMLSRTQFSFTHKPTFLLSSKKE-SFFTLRASAADN-GAGVSAPAVTVEEP 64
            +S S   SS L  ++ +   + +  L +K E S  ++  ++ D  G     P+      
Sbjct: 3   SMSLSRASSSTLVVSKPNPQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGG 62

Query: 65  KVR--EASEGPTESNGAVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEA 122
            +    A+        A +     +V KFEDP+W NGTWDL QF+K+G+TDWDAVIDAE 
Sbjct: 63  TLEGEAAAGKDPGPAAAAKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDAEV 122

Query: 123 RRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFHLPEAELLNGAA 169
            RRKWLE++PE+SSND+PV+FDTSI+PWWAW+KRFHLPEAELLNG A
Sbjct: 123 VRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRA 169

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PLN00014	250	light-harvesting-like protein 3; Provisional	100.0
PHA02337	35	putative high light inducible protein	89.32

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=100.00  E-value=4.9e-62  Score=412.28  Aligned_cols=165  Identities=46%  Similarity=0.829  Sum_probs=131.5

Q ss_pred             cccccccCCCCCCC-ccCCccccccCcceeecCCC-ccchhhhhccccCCCccC-CCcccccCCCccc--CCCCCCCCCC
Q 030789            4 SIDLLSFSPPPSSM-LSRTQFSFTHKPTFLLSSKK-ESFFTLRASAADNGAGVS-APAVTVEEPKVRE--ASEGPTESNG   78 (171)
Q Consensus         4 s~~ma~FSPp~~~~-~~~p~~~~~~k~~~~L~~~~-~~l~~~~ras~dnga~~s-a~a~~VE~Pkp~~--a~~~~~~sng   78 (171)
                      +|+|++++++.+++ +++|+  ..+++..+|.+++ .+++...+++++++..++ .++..++.++...  ++-...+..+
T Consensus         1 ~~~~sl~~~~~~~~~~~k~~--~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~pl~~gg~l~g~~a~gk~~~~aa   78 (250)
T PLN00014          1 MISMSLSRASSSTLVVSKPN--PQSRSSRSLGAKSEGSLVSVTVASTDGGGISERKPSPLERGGTLEGEAAAGKDPGPAA   78 (250)
T ss_pred             CcccccCCCccccccccCCC--cccccccccccccccceEEEeecccCCCCccccCCCccccCCCcccccccccCccccc
Confidence            36778888776665 46888  8899999999999 889999999999875333 2333444443221  1111111112


Q ss_pred             cccCcccccCCCccCCccccCccchhhhhhcCCcCchhhhhHHHHHhhhhhcCCCCCCCCCCeeeecCcchHHHHHHhhc
Q 030789           79 AVEAPEVKAVNKFEDPKWVNGTWDLKQFQKNGQTDWDAVIDAEARRRKWLENSPESSSNDDPVIFDTSIVPWWAWIKRFH  158 (171)
Q Consensus        79 A~~~~e~~~~~~f~D~RW~~GtWDl~qF~~~G~~dWDaVIdAE~~rRK~Led~Pe~s~n~epv~FdtsiiPWWaW~kRfh  158 (171)
                      ++......+.++|+||||+||||||+||++||+||||+||||||+||||||||||+|+||||||||||||||||||||||
T Consensus        79 ~~~~~~~~~~~~f~d~RW~~GtWDl~qF~~dG~~DWd~vIdaEv~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~  158 (250)
T PLN00014         79 AAKTSLAVSVGKFEDPRWKNGTWDLNQFKKDGKTDWDAVIDAEVVRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFH  158 (250)
T ss_pred             ccccccccccccccCchhcCCcccHHHHhhcCCcchHHHHHHHHHHHHHHhhCccccCCCCCceeecccccHHHHHHhcc
Confidence            23333344689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhccccC
Q 030789          159 LPEAELLNGAAL  170 (171)
Q Consensus       159 LPEAE~lNGRAA  170 (171)
                      ||+||++|||+|
T Consensus       159 l~~aE~lNGR~A  170 (250)
T PLN00014        159 LPEAELLNGRAA  170 (250)
T ss_pred             CchhHhhhhHHH
Confidence            999999999997

>PHA02337 putative high light inducible protein

Probab=89.32  E-value=0.093  Score=34.08  Aligned_cols=11  Identities=55%  Similarity=0.800  Sum_probs=10.0

Q ss_pred             chhhhhccccC
Q 030789          160 PEAELLNGAAL  170 (171)
Q Consensus       160 PEAE~lNGRAA  170 (171)
                      |.||++|||+|
T Consensus         3 ~~aE~~NGRlA   13 (35)
T PHA02337          3 PEAEIFNGWLA   13 (35)
T ss_pred             cHHHHHhhHHH
Confidence            68999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00