Citrus Sinensis ID: 030793

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Secondary Structure (PSIPRED)
cEEEEEccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEccEEEccccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEEccEcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHccccEcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHccccccEEEEEccEEEEcccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
milrwhpfflnpsapkegvnkkdfyenkfgsqnqGIIARMTEVFRGLGLeynmsgltgntldSHRLLYLAGQQGLDKQHNLAEELFLGYFtqgkyigdkEFLVECARKVGVegaaeflddpnsglnEVHEELKKYSanisgvphfvlngkhelsggqppEVYLRAFQVAAN
Flexible Loop (DISEMBL)
milrwhpfflnpsapkegvNKKDFYENkfgsqnqgiIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAaeflddpnsgLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Low Complexity Region (SEG)
MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Disordered region (IsUnstruct)
**LRWHPFFLN***********DFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDD****L*EVHEELKKYSANISGVPHFVLNGK**********VYLR*******
Disordered Region (DISOPRED)
MILRWHPFFLNPSAPKEGVNKKDFYENKF************EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Disordered Region (DISEMBL)
MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Disordered Region (DISPRO)
MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
298204452	250	unnamed protein product [Vitis vinifera]	0.982	0.672	0.803	1e-76
225451823	217	PREDICTED: uncharacterized protein ywbO	0.982	0.774	0.803	1e-76
224120676	217	predicted protein [Populus trichocarpa]	0.982	0.774	0.761	4e-74
255569918	217	protein disulfide oxidoreductase, putati	0.988	0.778	0.757	5e-73
449476397	259	PREDICTED: uncharacterized protein YwbO-	0.976	0.644	0.724	3e-67
351725231	213	uncharacterized protein LOC100527784 [Gl	0.976	0.784	0.706	5e-67
449438729	218	PREDICTED: uncharacterized protein YwbO-	0.976	0.766	0.718	6e-67
242033733	241	hypothetical protein SORBIDRAFT_01g01511	0.988	0.701	0.694	6e-66
356526550	213	PREDICTED: uncharacterized protein ywbO-	0.976	0.784	0.700	2e-65
346473627	181	hypothetical protein [Amblyomma maculatu	0.982	0.928	0.698	2e-64

>gi|298204452|emb|CBI16932.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/168 (80%), Positives = 156/168 (92%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLD 62
           LRWHPFFLNPSAPKEG+NK +FY+NKFG +++ I ARMTEVFRGLGL+YN+SGLTGNTLD
Sbjct: 82  LRWHPFFLNPSAPKEGINKIEFYKNKFGPRSEQIAARMTEVFRGLGLQYNLSGLTGNTLD 141

Query: 63  SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPN 122
           SHRL+Y AG+QGLDKQHNL EEL LGYFTQGKYIGD+EFLVE A+KVGVEGAAEFL DPN
Sbjct: 142 SHRLIYFAGKQGLDKQHNLVEELCLGYFTQGKYIGDREFLVESAKKVGVEGAAEFLQDPN 201

Query: 123 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170
           +GLNEV+EE KKYSA++SGVP++V+NGK +LSGGQPPEV+LRAFQ AA
Sbjct: 202 NGLNEVNEEFKKYSAHLSGVPYYVINGKQQLSGGQPPEVFLRAFQAAA 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451823|ref|XP_002281555.1| PREDICTED: uncharacterized protein ywbO [Vitis vinifera]

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/168 (80%), Positives = 156/168 (92%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLD 62
           LRWHPFFLNPSAPKEG+NK +FY+NKFG +++ I ARMTEVFRGLGL+YN+SGLTGNTLD
Sbjct: 49  LRWHPFFLNPSAPKEGINKIEFYKNKFGPRSEQIAARMTEVFRGLGLQYNLSGLTGNTLD 108

Query: 63  SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPN 122
           SHRL+Y AG+QGLDKQHNL EEL LGYFTQGKYIGD+EFLVE A+KVGVEGAAEFL DPN
Sbjct: 109 SHRLIYFAGKQGLDKQHNLVEELCLGYFTQGKYIGDREFLVESAKKVGVEGAAEFLQDPN 168

Query: 123 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170
           +GLNEV+EE KKYSA++SGVP++V+NGK +LSGGQPPEV+LRAFQ AA
Sbjct: 169 NGLNEVNEEFKKYSAHLSGVPYYVINGKQQLSGGQPPEVFLRAFQAAA 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120676|ref|XP_002330924.1| predicted protein [Populus trichocarpa] gi|222873118|gb|EEF10249.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 128/168 (76%), Positives = 156/168 (92%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLD 62
           ++WHPFFLNPSAPKEGVNK DFY  KFGS+ +GI+ARMTE+F+GLGLEYN+SGLTGNTLD
Sbjct: 49  IKWHPFFLNPSAPKEGVNKLDFYREKFGSRAEGILARMTEIFKGLGLEYNLSGLTGNTLD 108

Query: 63  SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPN 122
           SHRL+  AGQQGLDKQH LAEELFLGYFTQ KY+GD+EFL+ECA+KVGVEGAA+FL+DPN
Sbjct: 109 SHRLINFAGQQGLDKQHKLAEELFLGYFTQAKYVGDREFLLECAQKVGVEGAAKFLEDPN 168

Query: 123 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170
           +G+ EV+EEL+KYSA+I+GVP +V+NGK +LSGGQPPEV+ +AF+V+A
Sbjct: 169 NGVKEVNEELEKYSAHITGVPFYVINGKQKLSGGQPPEVFQKAFEVSA 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569918|ref|XP_002525922.1| protein disulfide oxidoreductase, putative [Ricinus communis] gi|223534751|gb|EEF36442.1| protein disulfide oxidoreductase, putative [Ricinus communis]

 Score =  278 bits (711), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 128/169 (75%), Positives = 150/169 (88%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLD 62
           ++WHPFFLNPSAPKEGVNK  +Y  KFGS+  GIIARMTEVFRGLGLEYN+SGLTGNTLD
Sbjct: 49  IKWHPFFLNPSAPKEGVNKLQYYREKFGSRTDGIIARMTEVFRGLGLEYNISGLTGNTLD 108

Query: 63  SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPN 122
           SHRL+  AGQQGLDKQH L EELFLGYFTQ KYIGD+EFL+ECA + G+ GAAEFL DPN
Sbjct: 109 SHRLINFAGQQGLDKQHKLVEELFLGYFTQAKYIGDREFLLECAAEAGLWGAAEFLADPN 168

Query: 123 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 171
           +G+ EV E+L+KYS NI+GVP++V+NGKH+LSGGQP EV+LRAF+VAA+
Sbjct: 169 NGVQEVSEDLEKYSTNITGVPYYVINGKHKLSGGQPTEVFLRAFEVAAS 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476397|ref|XP_004154726.1| PREDICTED: uncharacterized protein YwbO-like [Cucumis sativus]

 Score =  259 bits (662), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/167 (72%), Positives = 145/167 (86%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLD 62
           L WHPF LNP+APKEGV K ++Y +KFG Q++ + ARM EVFRGLGL+Y+ SGLTGNTL+
Sbjct: 91  LNWHPFQLNPTAPKEGVVKTEYYRSKFGIQSEQMEARMAEVFRGLGLDYDTSGLTGNTLE 150

Query: 63  SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPN 122
           SH+L+YLAGQQGL KQH+L EEL LGYFTQGKYIGD++FL+ECARK GVEGAAEFL+  +
Sbjct: 151 SHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDRDFLLECARKAGVEGAAEFLETAD 210

Query: 123 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169
           SG+ EV EEL+KYS  ISGVP +V+NGKH+LSG QPPEV+LRAFQVA
Sbjct: 211 SGVKEVKEELEKYSGKISGVPFYVINGKHKLSGAQPPEVFLRAFQVA 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725231|ref|NP_001237341.1| uncharacterized protein LOC100527784 [Glycine max] gi|255633202|gb|ACU16957.1| unknown [Glycine max]

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 145/167 (86%)

Query: 5   WHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSH 64
           WHPF L+P APKEG++K+++Y  KFGSQ++ + ARM+EVF+ +GLEY++SGLTGNT+DSH
Sbjct: 47  WHPFQLSPDAPKEGIDKREYYRRKFGSQSERMEARMSEVFKNVGLEYSLSGLTGNTIDSH 106

Query: 65  RLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSG 124
           RL+Y A QQGLDKQH+L EEL +GYFTQGKYIGD +FL+E A KVG+EGA EFL DPN+G
Sbjct: 107 RLIYFARQQGLDKQHDLVEELNIGYFTQGKYIGDHKFLLESAAKVGIEGAEEFLKDPNNG 166

Query: 125 LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 171
           L EV EELK YS NISGVP++V+NG H+LSGGQPPEV+LRAFQVA N
Sbjct: 167 LKEVEEELKTYSGNISGVPYYVINGNHKLSGGQPPEVFLRAFQVATN 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438729|ref|XP_004137140.1| PREDICTED: uncharacterized protein YwbO-like [Cucumis sativus]

 Score =  258 bits (659), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 145/167 (86%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLD 62
           L WHPF LNP+APKEGV K ++Y +KFG Q++ + ARM EVFRGLGL+Y+ SGLTGNTL+
Sbjct: 50  LNWHPFQLNPTAPKEGVVKTEYYRSKFGIQSEQMEARMAEVFRGLGLDYDTSGLTGNTLE 109

Query: 63  SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPN 122
           SH+L+YLAGQQGL KQH+L EEL LGYFTQGKYIGD++FL+ECARK GVEGAAEFL+  +
Sbjct: 110 SHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDRDFLLECARKAGVEGAAEFLETAD 169

Query: 123 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169
           +G+ EV EEL+KYS  ISGVP +V+NGKH+LSG QPPEV+LRAFQVA
Sbjct: 170 NGVKEVKEELEKYSGKISGVPFYVINGKHKLSGAQPPEVFLRAFQVA 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242033733|ref|XP_002464261.1| hypothetical protein SORBIDRAFT_01g015110 [Sorghum bicolor] gi|241918115|gb|EER91259.1| hypothetical protein SORBIDRAFT_01g015110 [Sorghum bicolor]

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 118/170 (69%), Positives = 143/170 (84%), Gaps = 1/170 (0%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGS-QNQGIIARMTEVFRGLGLEYNMSGLTGNTL 61
           +RWHPFFLNP APKEGV K DF+  KFG  Q +  I+RMTE+FRGLGLEY+MSGLTGNT+
Sbjct: 69  VRWHPFFLNPDAPKEGVRKTDFFRAKFGPVQYERAISRMTEIFRGLGLEYDMSGLTGNTM 128

Query: 62  DSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDP 121
           DSHRL+ LAG QG DKQ+ L EELFL YF QGKYIGDK+ L++ ARKVG+EGA E L+DP
Sbjct: 129 DSHRLITLAGHQGYDKQNALVEELFLNYFCQGKYIGDKQVLLDAARKVGIEGAEELLEDP 188

Query: 122 NSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 171
           + G++EV EELKKYS+ ISGVPHFV+N K++LSGGQPP V++RAF++AA 
Sbjct: 189 SKGVDEVQEELKKYSSGISGVPHFVINNKYQLSGGQPPNVFMRAFEMAAK 238

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526550|ref|XP_003531880.1| PREDICTED: uncharacterized protein ywbO-like [Glycine max]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/167 (70%), Positives = 143/167 (85%)

Query: 5   WHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSH 64
           WHPF LNP APKEG++K++FY +KFGSQ++ + ARM+EVF+ +GLEY++SGLTGNT+DSH
Sbjct: 47  WHPFQLNPDAPKEGIDKREFYRSKFGSQSERMEARMSEVFKNVGLEYSLSGLTGNTIDSH 106

Query: 65  RLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSG 124
           RL+Y A QQGLDKQH+L EEL +GYFTQGKYIGD +FL+E A KVG+EGA EFL DPN+G
Sbjct: 107 RLIYFARQQGLDKQHDLVEELNIGYFTQGKYIGDHKFLLESAAKVGIEGAEEFLKDPNNG 166

Query: 125 LNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN 171
           L EV EELK  S NISGVP++V+NG H+LSGGQ PEV+LRAFQVA  
Sbjct: 167 LKEVEEELKNNSGNISGVPYYVINGTHKLSGGQAPEVFLRAFQVATT 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346473627|gb|AEO36658.1| hypothetical protein [Amblyomma maculatum]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 145/169 (85%), Gaps = 1/169 (0%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGS-QNQGIIARMTEVFRGLGLEYNMSGLTGNTL 61
           +RWHP+FLNPSAPKEG+ K DFY+ KFG+ Q + +++RMTEVFRG+GLEYN SGLTGNTL
Sbjct: 12  VRWHPYFLNPSAPKEGIPKSDFYKQKFGAGQYERMMSRMTEVFRGVGLEYNTSGLTGNTL 71

Query: 62  DSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDP 121
           DSHRL+  A  QG DKQ+ L EELFL YF QGKYIGD++ L++ A KVGV+GAAEFL+DP
Sbjct: 72  DSHRLINFAALQGYDKQNALVEELFLNYFCQGKYIGDRQVLLDAAIKVGVQGAAEFLEDP 131

Query: 122 NSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170
           NSGL EV+EEL+KYS+  SGVP++V+NGKH ++GGQPPEV+LRAFQ AA
Sbjct: 132 NSGLKEVNEELEKYSSGNSGVPNYVINGKHRINGGQPPEVFLRAFQAAA 180

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2152307	217	AT5G38900 [Arabidopsis thalian	0.982	0.774	0.648	1e-59
UNIPROTKB|Q5LRQ5	218	SPO2070 "DSBA-like thioredoxin	0.923	0.724	0.327	1.3e-22
TIGR_CMR|SPO_2070	218	SPO_2070 "DSBA-like thioredoxi	0.923	0.724	0.327	1.3e-22
TIGR_CMR|SPO_1390	219	SPO_1390 "thioredoxin domain p	0.947	0.739	0.352	6.5e-19
UNIPROTKB|Q87XK1	215	PSPTO_4177 "2-hydroxychromene-	0.947	0.753	0.354	1.7e-18
ASPGD|ASPL0000031134	202	AN10641 [Emericella nidulans (	0.853	0.722	0.339	4.7e-16
UNIPROTKB|Q9KMY8	217	VC_A0178 "FrnE protein" [Vibri	0.947	0.746	0.329	4.2e-15
TIGR_CMR|VC_A0178	217	VC_A0178 "conserved hypothetic	0.947	0.746	0.329	4.2e-15
UNIPROTKB|G4N6W8	285	MGG_06508 "Thioredoxin" [Magna	0.473	0.284	0.352	6e-13
UNIPROTKB|Q0C2F9	221	HNE_1367 "Putative frnE protei	0.964	0.746	0.280	2.2e-11

TAIR|locus:2152307 AT5G38900 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 109/168 (64%), Positives = 141/168 (83%)

Query:     3 LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLD 62
             +RW PFFL+PSAPKEGV+KK+FY  K+G++ QG+ ARM+EVF+GLGLE++ +GLTGN+LD
Sbjct:    49 IRWRPFFLDPSAPKEGVSKKEFYLQKYGNRYQGMFARMSEVFKGLGLEFDTAGLTGNSLD 108

Query:    63 SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPN 122
             SHRL++  G+Q  +KQH L EELF+GYFTQGK+IGD+EFLVE A KVG+EGA EFL DPN
Sbjct:   109 SHRLIHYTGKQAPEKQHTLVEELFIGYFTQGKFIGDREFLVETANKVGIEGAEEFLSDPN 168

Query:   123 SGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170
             +G+ EV EEL KYS NI+GVP++ +NGK +LSG QPPE +  AF+ A+
Sbjct:   169 NGVTEVKEELAKYSKNITGVPNYTINGKVKLSGAQPPETFQSAFKAAS 216

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q5LRQ5 SPO2070 "DSBA-like thioredoxin family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 55/168 (32%), Positives = 94/168 (55%)

Query:     2 ILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-----GLGLEYNMSGL 56
             ++ WHPF LNP    EG++++++ E KFG + +G +     V       GL +++     
Sbjct:    38 VIEWHPFQLNPDMAPEGMDRREYLERKFGGK-EGAVRAYAPVVEHAEKAGLAIDFEAMQR 96

Query:    57 TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE 116
             T NTLD+HRL++ AG +G  KQ    + LF  YFT+G+ IGD E L + A  +G++ A  
Sbjct:    97 TPNTLDAHRLIHWAGVEG--KQTEAVDALFAAYFTEGRDIGDAEVLADIADSIGMDAAVV 154

Query:   117 F-LDDPNSGLNEVHE-ELKKYSANISGVPHFVLNGKHELSGGQPPEVY 162
               L   ++  +++ + +       +S VP F++  +H + G QPPE++
Sbjct:   155 LKLLKSDADRDDIAKRDSHSREMGVSSVPTFIVANQHAVPGAQPPELW 202

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2070 SPO_2070 "DSBA-like thioredoxin family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 55/168 (32%), Positives = 94/168 (55%)

Query:     2 ILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-----GLGLEYNMSGL 56
             ++ WHPF LNP    EG++++++ E KFG + +G +     V       GL +++     
Sbjct:    38 VIEWHPFQLNPDMAPEGMDRREYLERKFGGK-EGAVRAYAPVVEHAEKAGLAIDFEAMQR 96

Query:    57 TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAE 116
             T NTLD+HRL++ AG +G  KQ    + LF  YFT+G+ IGD E L + A  +G++ A  
Sbjct:    97 TPNTLDAHRLIHWAGVEG--KQTEAVDALFAAYFTEGRDIGDAEVLADIADSIGMDAAVV 154

Query:   117 F-LDDPNSGLNEVHE-ELKKYSANISGVPHFVLNGKHELSGGQPPEVY 162
               L   ++  +++ + +       +S VP F++  +H + G QPPE++
Sbjct:   155 LKLLKSDADRDDIAKRDSHSREMGVSSVPTFIVANQHAVPGAQPPELW 202

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1390 SPO_1390 "thioredoxin domain protein, DsbA family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 61/173 (35%), Positives = 90/173 (52%)

Query:     3 LRWHPFFLNPSAPKEGVNKKDFYENKFGS---QNQGIIARMTEVFRGLGLEYNMSGLTG- 58
             LRWHPF LNP    EG N ++    K+GS   Q+    AR+T +   LG  +N +  +  
Sbjct:    43 LRWHPFELNPQMGPEGQNLREHIMEKYGSTPEQSAEARARLTAIGAELGFTFNFTDDSRI 102

Query:    59 -NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEF 117
              NT  +H+LL  A  QG  +QH L + LF  YFT G+ + D   L++     G++  A  
Sbjct:   103 VNTFAAHQLLDWAEGQG--RQHPLKQALFAAYFTDGRDVSDLSVLLDAVEAAGLDREAA- 159

Query:   118 LDDPNSGLNE--VHEELKKYSAN-ISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167
                  SG ++  V E+ K ++ + ISGVP  V  GK+ L+G Q  + Y +  Q
Sbjct:   160 QTALTSGAHQAPVREKQKFWAQHGISGVPSMVFGGKYLLTGAQGADTYAQVIQ 212

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|Q87XK1 PSPTO_4177 "2-hydroxychromene-2-carboxylate isomerase family protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 61/172 (35%), Positives = 95/172 (55%)

Query:     3 LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTG---- 58
             + + PF LNP+ P EG + K+    K+GS  + I A + E  R  G E   +   G    
Sbjct:    40 IHFQPFELNPNMPAEGQDIKEHIAEKYGSTPEQIEA-IHETIRERGAELGFTFGKGERRI 98

Query:    59 -NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA-AE 116
              NT D+HRLL+ A Q+G  KQ  L + LF+ YF++ K     + L + A+KVG++   A+
Sbjct:    99 YNTFDAHRLLHWAEQEG--KQPALKQALFVAYFSELKDPSSHQTLADVAQKVGLDRLRAQ 156

Query:   117 FLDDPNSGLNEVHEELKKY-SANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167
              + D +   +EV E  + + S  I+ VP  V N ++ +SGGQP EV++ A +
Sbjct:   157 AILDSDEFASEVREAEQLWTSRGITSVPTMVFNDQYAVSGGQPVEVFVSAIR 208

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000031134 AN10641 [Emericella nidulans (taxid:162425)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 58/171 (33%), Positives = 88/171 (51%)

Query:     3 LRWHPFFLNPSAPK-EGVNKKDFYENKFGSQNQG-IIARMTEVFRGLGLEYNM--SGLTG 58
             + W PF+LN S+P   GVNK+ FYENKFG+   G I  R+  V  G G+++    +G+ G
Sbjct:    42 ITWSPFYLNASSPGYPGVNKRQFYENKFGAARTGAIFERLAAVGEGEGIKFRKIENGVIG 101

Query:    59 NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA-AE- 116
                            GL  Q  + E LF  YF + K I ++  LVE A   G++ +  E 
Sbjct:   102 ---------------GL--QTRVVERLFRAYFEEEKNITERAVLVEAAVGGGLDKSEVEG 144

Query:   117 FLDDPNSGLNEVHEELKKYSAN-ISGVPHFVLNGKHELSGGQPPEVYLRAF 166
             FLD    G+ EV  + +      ++GVP+F++ G++ + G   PE +L  F
Sbjct:   145 FLDSDVGGV-EVDRDAEGARRQFVTGVPYFMVQGQYAIEGADEPETFLEVF 194

GO:0008150 "biological_process" evidence=ND

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

UNIPROTKB|Q9KMY8 VC_A0178 "FrnE protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 57/173 (32%), Positives = 87/173 (50%)

Query:     3 LRWHPFFLNPSAPKEGVNKKDFYENKFGSQ---NQGIIARMTEVFRGLGLEYNMSGLTG- 58
             LRWHP+ LNP     G N ++    K+G+    +Q     +TE+   +G  ++       
Sbjct:    38 LRWHPYELNPRLAIGGENLREHLNKKYGTSLEASQQARKTLTELGNDVGFAFHFFDEMRI 97

Query:    59 -NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAA-- 115
              NT  +H+LL  A QQ  DKQ  L   L+  YF QG+ I + E L+E A+ VG++ +A  
Sbjct:    98 YNTRKAHQLLLWAHQQ--DKQLPLTLALWSAYFQQGQAIDEDEVLLEIAQTVGLDRSACQ 155

Query:   116 EFLDDPNSGLNEV-HEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167
             + L D  S  N V + E +   A I  VP  ++  K+ +SG Q  ++ L   Q
Sbjct:   156 QILTD-ESWANAVANTEQQWLQAGIHAVPTLIIEQKYLISGAQTSDILLDVLQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_A0178 VC_A0178 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 57/173 (32%), Positives = 87/173 (50%)

Query:     3 LRWHPFFLNPSAPKEGVNKKDFYENKFGSQ---NQGIIARMTEVFRGLGLEYNMSGLTG- 58
             LRWHP+ LNP     G N ++    K+G+    +Q     +TE+   +G  ++       
Sbjct:    38 LRWHPYELNPRLAIGGENLREHLNKKYGTSLEASQQARKTLTELGNDVGFAFHFFDEMRI 97

Query:    59 -NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAA-- 115
              NT  +H+LL  A QQ  DKQ  L   L+  YF QG+ I + E L+E A+ VG++ +A  
Sbjct:    98 YNTRKAHQLLLWAHQQ--DKQLPLTLALWSAYFQQGQAIDEDEVLLEIAQTVGLDRSACQ 155

Query:   116 EFLDDPNSGLNEV-HEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167
             + L D  S  N V + E +   A I  VP  ++  K+ +SG Q  ++ L   Q
Sbjct:   156 QILTD-ESWANAVANTEQQWLQAGIHAVPTLIIEQKYLISGAQTSDILLDVLQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4N6W8 MGG_06508 "Thioredoxin" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 118 (46.6 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
 Identities = 31/88 (35%), Positives = 47/88 (53%)

Query:    85 LFLGYFTQGKYIGDKEFLVECARKVGV---EGAA-EFLDDPNSGLNEV-HEELKKYSANI 139
             L+ G F QG+ I D+ FL   A   G+   +G A  +LD   +  N++  E        I
Sbjct:   187 LYSGVFEQGRNISDRGFLASAAVDAGLARDQGQALRWLDAAEA--NDILAERTAAIPDEI 244

Query:   140 SGVPHFVLNGKHELSGGQPPEVYLRAFQ 167
             S VP FV+  K ++ G QPP+V+L+ F+
Sbjct:   245 SAVPCFVVQDKFQVGGAQPPDVFLQVFE 272

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|Q0C2F9 HNE_1367 "Putative frnE protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 50/178 (28%), Positives = 85/178 (47%)

Query:     3 LRWHPFFLNPSAPKEGVNKKDFYENKFGS-QNQGIIARMTEVFRGLG----LEYNMSGLT 57
             L + P+ L+P+ P  GV+ K++  ++  S + +  +A M +     G    + Y    +T
Sbjct:    37 LLFRPYELDPTIPAAGVDYKEYMGSRVSSPEGKERMAAMRQALIDYGAAEDIPYRFDAVT 96

Query:    58 G--NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEG-- 113
                N+ D+HRL+  A  QG  K     E LF  YF + + IGD   LV+ AR + ++   
Sbjct:    97 HRPNSFDAHRLVRWA--QGQGKGAEAKEALFRAYFNEARNIGDHGVLVDIARSIDLDADI 154

Query:   114 AAEFLDDPNSGLNEVHEELKKY-SANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170
              A+ L    +  + V +E   +    ISGVP ++ N +  + G +  E   R  + AA
Sbjct:   155 VADLLKT-GADTDIVRQEADTFRQMGISGVPTYIANRRVAVQGAESAEKLERFIRHAA 211

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.18	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
cd03024	201	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; F	2e-57
COG2761	225	COG2761, FrnE, Predicted dithiol-disulfide isomera	5e-35
pfam01323	191	pfam01323, DSBA, DSBA-like thioredoxin domain	1e-26
cd03022	192	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychro	5e-08
cd03019	178	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; D	0.002

>gnl|CDD|239322 cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

 Score =  178 bits (453), Expect = 2e-57
 Identities = 68/171 (39%), Positives = 100/171 (58%), Gaps = 9/171 (5%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIA--RMTEVFRGLGLEYNMSGLT-GN 59
           + W PF LNP  P EG +++++   K+GS  +   A  R+       GLE++   +   N
Sbjct: 34  IEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAAEGLEFDFDRVRPPN 93

Query: 60  TLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAA--EF 117
           T D+HRL++LA +QG  KQ  L E LF  YFT+GK IGD++ LV+ A + G++ A     
Sbjct: 94  TFDAHRLIHLAKEQG--KQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAV 151

Query: 118 LDDPNSGLNEVHEELKKYSAN-ISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167
           L   +   +EV  +  +     ISGVP FV NGK+ +SG QPPEV+L+A +
Sbjct: 152 LAS-DEYADEVRADEARARQLGISGVPFFVFNGKYAVSGAQPPEVFLQALR 201

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins. Length = 201

>gnl|CDD|225355 COG2761, FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  121 bits (306), Expect = 5e-35
 Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 10/177 (5%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQ--NQGIIARMTEVFRGLGLEYNMSGL--TG 58
           +RW PF L+P  P EG+++K++   K+G     +   AR+ E+    G+++N   +    
Sbjct: 41  IRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLEELAEEEGIDFNFDAIVPAP 100

Query: 59  NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEG--AAE 116
           NTLD+HRL+  A  QG   Q    E LF  YF +G+ IGD++ L + A +VG++      
Sbjct: 101 NTLDAHRLIKAAELQG-KAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKA 159

Query: 117 FLDDPNSGLNEVHEELKKYS-ANISGVPHFVLNGKHELSGGQPPEVYLRA-FQVAAN 171
            L    +  + V ++        I GVP FV +GK+ +SG QP +V   A  Q+ A 
Sbjct: 160 DLASD-AAKDAVRQDEAAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLAE 215

Length = 225

>gnl|CDD|216433 pfam01323, DSBA, DSBA-like thioredoxin domain

 Score = 99.0 bits (247), Expect = 1e-26
 Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 11/168 (6%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL-TGNTL 61
           + + PF L  +     V   +        + + ++A +       G+         GN+ 
Sbjct: 32  VVYRPFPLAGAKKIGNVGPSNLPV-----KLKYMMADLERWAALYGIPLRFPANFLGNST 86

Query: 62  DSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAA--EFLD 119
            ++RL   AG +       +  ELF   + +G  I D   L E A K G++     EFLD
Sbjct: 87  RANRLALAAGAE--GLAEKVVRELFNALWGEGAAITDDSVLREVAEKAGLDAEEFDEFLD 144

Query: 120 DPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ 167
            P              S  + GVP FV+ GK  + G    +    A  
Sbjct: 145 SPAVKEAVRENTAAAISLGVFGVPTFVVGGK-MVFGADRLDTLADALA 191

This family contains a diverse set of proteins with a thioredoxin-like structure pfam00085. This family also includes 2-hydroxychromene-2-carboxylate (HCCA) isomerase enzymes catalyze one step in prokaryotic polyaromatic hydrocarbon (PAH) catabolic pathways. This family also contains members with functions other than HCCA isomerisation, such as Kappa family GSTs, whose similarity to HCCA isomerases was not previously recognised. Some member sequences have been annotated as a dioxygenases, dehydrogenases, and putative glycerol-3-phosphate transfer proteins, but are most likely HCCA isomerase enzymes. Length = 191

>gnl|CDD|239320 cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

 Score = 49.9 bits (120), Expect = 5e-08
 Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 37/165 (22%)

Query: 3   LRWHPFFLNP-------SAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRG---LGLEYN 52
           +R+ P  L           P      K  Y             R+ ++ R     G+   
Sbjct: 30  VRYRPILLGGVFKATGNVPPANRPPAKGRY-------------RLRDLERWARRYGIPLR 76

Query: 53  M-SGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGV 111
                  NTL + R    A  +G   +   A  +F   + +G  I D   L   A   G+
Sbjct: 77  FPPRFPPNTLRAMRAALAAQAEGDAAEA-FARAVFRALWGEGLDIADPAVLAAVAAAAGL 135

Query: 112 EGAA--EFLDDPNSGLNEVHEELKK-----YSANISGVPHFVLNG 149
           +        DDP      V   L+       +  + GVP FV++G
Sbjct: 136 DADELLAAADDP-----AVKAALRANTEEAIARGVFGVPTFVVDG 175

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK). Length = 192

>gnl|CDD|239317 cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 65  RLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSG 124
           R  Y A  + L  +  L   LF     + K + D + + +     GV+   +F    NS 
Sbjct: 67  RAFYAA--EALGLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVD-KKKFDAAYNS- 122

Query: 125 LNEVHEELKKY-----SANISGVPHFVLNGKHELSGG 156
              V   + K         I+GVP FV+NGK+ ++  
Sbjct: 123 -FSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNPS 158

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	100.0
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	100.0
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	99.95
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	99.95
cd03021	209	DsbA_GSTK DsbA family, Glutathione (GSH) S-transfe	99.95
COG3917	203	NahD 2-hydroxychromene-2-carboxylate isomerase [Se	99.92
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	99.81
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	99.7
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	99.66
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	99.64
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	99.6
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	99.6
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	99.09
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	98.86
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	98.14
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.86
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.55
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.43
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.32
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.06
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	96.35
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	96.2
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	96.09
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	95.91
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	95.14
PF07511	114	DUF1525: Protein of unknown function (DUF1525); In	94.45
COG2143	182	Thioredoxin-related protein [Posttranslational mod	94.33
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	94.32
TIGR03757	113	conj_TIGR03757 integrating conjugative element pro	94.14
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	93.9
PRK10996	139	thioredoxin 2; Provisional	93.6
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	93.57
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	92.94
PRK09381	109	trxA thioredoxin; Provisional	92.65
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	92.25
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	91.99
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	91.66
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	91.61
PHA02278	103	thioredoxin-like protein	91.57
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	91.48
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	91.21
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	90.98
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	90.93
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	90.85
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	90.72
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	90.57
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	90.26
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	89.99
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	89.6
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	89.54
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	89.31
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	89.15
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	89.04
PRK11200	85	grxA glutaredoxin 1; Provisional	88.93
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	88.91
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	88.81
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	88.6
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	88.3
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	88.1
PHA02125	75	thioredoxin-like protein	87.9
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	87.59
cd02947	93	TRX_family TRX family; composed of two groups: Gro	86.95
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	86.85
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	86.49
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	86.44
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	85.92
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	85.85
PHA03050	108	glutaredoxin; Provisional	85.69
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	85.68
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	85.54
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	85.41
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	85.13
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	84.94
PF00356	46	LacI: Bacterial regulatory proteins, lacI family;	84.73
PRK10329	81	glutaredoxin-like protein; Provisional	84.59
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	84.57
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	83.35
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	82.84
PRK10638	83	glutaredoxin 3; Provisional	82.1
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	81.52
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	80.44
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	80.43
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	80.27
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	80.13
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	80.12

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.1e-36  Score=224.62  Aligned_cols=168  Identities=34%  Similarity=0.642  Sum_probs=154.9

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCC--hHHHHHHHHHHHHHhcCCccccCCC--CCCcHHHHHHHHHHHhcCcc
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFRGLGLEYNMSGL--TGNTLDSHRLLYLAGQQGLD   76 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~--~~~~~~~~~~~~a~~~g~~~~~~~~--~~~s~~a~r~~~~a~~~g~~   76 (171)
                      ++|+||||+|+|+.+..|.+..+++..+||.  ..+.+.+.+++.+...|+.+++...  .+||..|||++.||..+|+ 
T Consensus        39 v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~-  117 (225)
T COG2761          39 VEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGK-  117 (225)
T ss_pred             EEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHHHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCc-
Confidence            4799999999999999999999999999994  4477889999999999999999874  6899999999999999996 


Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeee
Q 030793           77 KQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHEL  153 (171)
Q Consensus        77 ~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i  153 (171)
                      .++++.++||++||.+|+||+|.++|.+||++.|||.+  .+.+.| +.+.+.++++... +++||+||||||++++|.|
T Consensus       118 ~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~~~L~s-~~~~~avr~d~~~A~e~gI~gVP~fv~d~~~~V  196 (225)
T COG2761         118 AQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFKADLAS-DAAKDAVRQDEAAAQEMGIRGVPTFVFDGKYAV  196 (225)
T ss_pred             hHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHHHHHhC-hHHHHHHHHHHHHHHHCCCccCceEEEcCcEee
Confidence            69999999999999999999999999999999999997  678888 5788889988775 8999999999999999999


Q ss_pred             ccCCCHHHHHHHHHHHh
Q 030793          154 SGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       154 ~G~~~~~~~~~~l~~~~  170 (171)
                      +|+++++.|..+|.++.
T Consensus       197 ~Gaq~~~v~~~al~~~~  213 (225)
T COG2761         197 SGAQPYDVLEDALRQLL  213 (225)
T ss_pred             cCCCCHHHHHHHHHHHH
Confidence            99999999999999875

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=100.00  E-value=1e-31  Score=199.07  Aligned_cols=164  Identities=41%  Similarity=0.755  Sum_probs=145.5

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCC--hHHHHHHHHHHHHHhcCCccccCCC-CCCcHHHHHHHHHHHhcCcch
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFRGLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDK   77 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~--~~~~~~~~~~~~a~~~g~~~~~~~~-~~~s~~a~r~~~~a~~~g~~~   77 (171)
                      ++|+|+||.|+|+.+.+|+...+++..++|.  +..+++.++.++++..|++|+++.. +.+|..|||++.+|+.+|  +
T Consensus        32 ~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~--~  109 (201)
T cd03024          32 VEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAAEGLEFDFDRVRPPNTFDAHRLIHLAKEQG--K  109 (201)
T ss_pred             eEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCcccCCCCccCCcHHHHHHHHHHhccC--c
Confidence            4799999999999999988777777777764  6778888999999999999999874 569999999999998888  8


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeec
Q 030793           78 QHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELS  154 (171)
Q Consensus        78 ~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~  154 (171)
                      ..+++++||+++|.+|+++++.++|.++++++|+|.+  .+++++ ++..+.++++.+. .+.||+|||||+|||+|.+.
T Consensus       110 ~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~-~~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~  188 (201)
T cd03024         110 QDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLAS-DEYADEVRADEARARQLGISGVPFFVFNGKYAVS  188 (201)
T ss_pred             HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcC-cccchHHHHHHHHHHHCCCCcCCEEEECCeEeec
Confidence            8999999999999999999999999999999999987  567877 4577788887665 78999999999999999999


Q ss_pred             cCCCHHHHHHHHH
Q 030793          155 GGQPPEVYLRAFQ  167 (171)
Q Consensus       155 G~~~~~~~~~~l~  167 (171)
                      |+++++.|.++|+
T Consensus       189 G~~~~~~~~~~i~  201 (201)
T cd03024         189 GAQPPEVFLQALR  201 (201)
T ss_pred             CCCCHHHHHHHhC
Confidence            9999999998874

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=99.95  E-value=5.3e-28  Score=177.79  Aligned_cols=159  Identities=19%  Similarity=0.306  Sum_probs=132.0

Q ss_pred             CeEEEeecccCCCCCCCCCC-HHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCC-CCCCcHHHHHHHHHHHhcCcchH
Q 030793            1 MILRWHPFFLNPSAPKEGVN-KKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG-LTGNTLDSHRLLYLAGQQGLDKQ   78 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~-~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~-~~~~s~~a~r~~~~a~~~g~~~~   78 (171)
                      ++|+||||+|+|.++..|+. ......    .+..++..++.++++..|++|+++. ++.+|..+|+++.+|+.+| ++.
T Consensus        28 ~~i~~~p~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~s~~a~~~~~~a~~~~-~~~  102 (192)
T cd03022          28 ATVRYRPILLGGVFKATGNVPPANRPP----AKGRYRLRDLERWARRYGIPLRFPPRFPPNTLRAMRAALAAQAEG-DAA  102 (192)
T ss_pred             CeeEEeeeeHHHHHHHhCCCCCccccc----HHHHHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHhCc-hhH
Confidence            57999999999976666542 111111    1567899999999999999999876 4679999999999998877 478


Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeecc
Q 030793           79 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSG  155 (171)
Q Consensus        79 ~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G  155 (171)
                      .+++++||+++|.+++++++.++|.+++.++|+|.+  .+.+++ .++.+.++++.+. .+.||+|||||+|||+ .+.|
T Consensus       103 ~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~-~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~-~~~G  180 (192)
T cd03022         103 EAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADELLAAADD-PAVKAALRANTEEAIARGVFGVPTFVVDGE-MFWG  180 (192)
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHHHHHcCC-HHHHHHHHHHHHHHHHcCCCcCCeEEECCe-eecc
Confidence            999999999999999999999999999999999986  566777 3566777776664 6899999999999998 5789


Q ss_pred             CCCHHHHHHHH
Q 030793          156 GQPPEVYLRAF  166 (171)
Q Consensus       156 ~~~~~~~~~~l  166 (171)
                      ..+.+.+...|
T Consensus       181 ~~~l~~~~~~l  191 (192)
T cd03022         181 QDRLDMLEEAL  191 (192)
T ss_pred             cccHHHHHHHh
Confidence            99999888765

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=99.95  E-value=3.8e-28  Score=178.63  Aligned_cols=159  Identities=28%  Similarity=0.491  Sum_probs=130.6

Q ss_pred             CeEEEeecccCCCCCCCC-CCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCCC-CCCcHHHHHHHHHHHhcCcchH
Q 030793            1 MILRWHPFFLNPSAPKEG-VNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQ   78 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g-~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~-~~~s~~a~r~~~~a~~~g~~~~   78 (171)
                      ++|+|+||.|.|..+..+ .+... ..    .+.+++..++.++++.+|++++++.. +.+|..+++++.+++.+|  +.
T Consensus        30 ~~i~~~p~~l~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~a~~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~--~~  102 (193)
T PF01323_consen   30 VEIEWRPFPLRPDMRRSGGAPPAE-DP----AKAEYMFQDLERWARRYGIPFNFPPPFPGNSRPAHRAAYAAQEQG--KA  102 (193)
T ss_dssp             CEEEEEEESSSTHHHHCT-SCGCG-SH----HHHHHHHHHHHHHHHHHT--TBTSSTHHHHHHHHHHHHHHHHHHH--HH
T ss_pred             CcEEEeccccccccccCCCCCccc-Ch----hHHHHHHHHHHHHHHHhcCcccCCchhhhhhHHHHHHHHHHHHhh--hh
Confidence            579999999999865443 23322 11    17789999999999999999998874 349999999999999999  89


Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeecc
Q 030793           79 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSG  155 (171)
Q Consensus        79 ~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G  155 (171)
                      .++++++|+++|.+|+||++.++|.++++++|+|.+  .+.+++ .+..+.++++.+. .++||+|||||+|||++.+.|
T Consensus       103 ~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~~-~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G  181 (193)
T PF01323_consen  103 DAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALDS-PEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFG  181 (193)
T ss_dssp             HHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEES
T ss_pred             hHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhcc-hHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEEC
Confidence            999999999999999999999999999999999987  567777 3566777776665 789999999999999988999


Q ss_pred             CCCHHHHHHHHH
Q 030793          156 GQPPEVYLRAFQ  167 (171)
Q Consensus       156 ~~~~~~~~~~l~  167 (171)
                      .++.+.|.++|+
T Consensus       182 ~~~~~~l~~~l~  193 (193)
T PF01323_consen  182 ADRLDELEDALQ  193 (193)
T ss_dssp             CSSHHHHHHHH-
T ss_pred             CCCHHHHHHHhC
Confidence            999999999875

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates

Probab=99.95  E-value=3.4e-27  Score=176.23  Aligned_cols=161  Identities=15%  Similarity=0.174  Sum_probs=125.8

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCCC----CCCcHHHHHHHHHHHhcCcc
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL----TGNTLDSHRLLYLAGQQGLD   76 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~----~~~s~~a~r~~~~a~~~g~~   76 (171)
                      ++|+||||+|+|.++.+|+..+....    .|..+++.+++++++..|++|++++.    +.||..|||++.+|+..|..
T Consensus        30 v~i~~~P~~L~~~~~~~g~~~~~~~~----~k~~~~~~~~~~~a~~~Gl~~~~~~~~~~~~~nt~~a~rl~~~a~~~~~~  105 (209)
T cd03021          30 VDITYVPVFLGGIMKDSGNKPPIMLP----NKAKYMAKDRKRSAEFFGVPIRQPKDFFFMKKGTLTAQRFLTAISEQHPE  105 (209)
T ss_pred             CeEEEEeeehhHHHhccCCCCcccCc----hHHHHHHHHHHHHHHHhCCCCCCCCCCcccCcccHHHHHHHHHHHhhCcc
Confidence            57999999999999888865332221    27899999999999999999999763    48999999999999887732


Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCHHH----HHHHHHHcCCchh--Hhhh---cCCCCChHHHHHHHHH-hhCCCCcccEEE
Q 030793           77 KQHNLAEELFLGYFTQGKYIGDKEF----LVECARKVGVEGA--AEFL---DDPNSGLNEVHEELKK-YSANISGVPHFV  146 (171)
Q Consensus        77 ~~~~~~~~l~~a~~~~g~~i~~~~~----L~~ia~~~Gld~~--~~~~---~~~~~~~~~v~~~~~~-~~~gv~gvPtfv  146 (171)
                      ...++.++||+++|.+|.++++..+    |.+++.++|||.+  ..++   ++ .++.++++++.+. .+.||+||||||
T Consensus       106 ~~~~~~~~l~~a~f~~g~~i~~~~~l~~vL~~~a~~~Gld~~~~~~~l~~~~~-~~~~~~l~~~~~~A~~~Gv~GVP~fv  184 (209)
T cd03021         106 STLTALEALFREFWVRPWSLTEPITESQSISVAADKLGGSAEQAEKLLKAAST-PEVKNRLKENTDEALKYGAFGLPWIV  184 (209)
T ss_pred             hHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHcCCCcccHHHHHHHccC-HHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            2367999999999999998885555    4799999999864  3455   34 3456777776654 789999999999


Q ss_pred             ECC--e--eeeccCCCHHHHHHHH
Q 030793          147 LNG--K--HELSGGQPPEVYLRAF  166 (171)
Q Consensus       147 v~~--~--~~i~G~~~~~~~~~~l  166 (171)
                      |++  .  ..++|....+.+++.|
T Consensus       185 v~~~~~~~e~fwG~Drl~~~~~~l  208 (209)
T cd03021         185 VTNDKGKTEMFFGSDRFEQVADFL  208 (209)
T ss_pred             EEcCCCCccceecCCcHHHHHHHh
Confidence            963  1  4678877777666654

It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.

>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=3.8e-24  Score=150.98  Aligned_cols=160  Identities=17%  Similarity=0.280  Sum_probs=125.7

Q ss_pred             eEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCC-CCCCcHHHHHHHHHHHhcCcchHHH
Q 030793            2 ILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG-LTGNTLDSHRLLYLAGQQGLDKQHN   80 (171)
Q Consensus         2 ~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~-~~~~s~~a~r~~~~a~~~g~~~~~~   80 (171)
                      .|.|||.+|+..++.+|+.. +....  +.+..|.+.++.|+++++|+++.+++ ++.|+.-+.|.+.++...| ....+
T Consensus        38 ~v~~rP~llg~vfk~tG~~~-Pl~~~--~~~~dY~~~d~~R~akr~Glp~~f~~~fp~nt~~~~R~~~~~~~~g-~~a~~  113 (203)
T COG3917          38 AVALRPILLGGVFKATGNGV-PLIKT--PQPGDYITLDLKREAKRHGLPLRFPRHFPPNTLGAARAMIALAMGG-GLAEQ  113 (203)
T ss_pred             ceEEEeeeeceeEeecCCCC-ccccc--CCCCceehHHHHHHHHHcCCccccCCCCCCchHHHHHHHHHHHhcc-chHHH
Confidence            58999999999999998632 22221  11357899999999999999998887 6899999999998863332 38999


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCC
Q 030793           81 LAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQ  157 (171)
Q Consensus        81 ~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~  157 (171)
                      |.++++++.|.++.|+.+++++..++.++|||.+  ...+.+ +++++.++.+.++ .+.||+|+||||++++ ..+|-.
T Consensus       114 ~~~a~lrAlw~d~~~l~epev~~~vA~~aGlDg~al~A~~gd-~eik~~l~a~~~~a~srGvfGaPtfivg~q-~fwGqD  191 (203)
T COG3917         114 FAEAVLRALWADGQNLGEPEVVYAVANAAGLDGAALLALLGD-DEIKARLKANTAEAVSRGVFGAPTFIVGDQ-LFWGQD  191 (203)
T ss_pred             HHHHHHHHHhhcccccCChHHHHHHHHHcCCCHHHHHhhcCC-HHHHHHHHhhHHHHHhcCccCCCeEEECCe-eeechh
Confidence            9999999999999999999999999999999987  344444 3455555555554 7899999999999887 456654


Q ss_pred             CHHHHHHHHH
Q 030793          158 PPEVYLRAFQ  167 (171)
Q Consensus       158 ~~~~~~~~l~  167 (171)
                      ....++..+.
T Consensus       192 RL~~lea~L~  201 (203)
T COG3917         192 RLYQLEAELR  201 (203)
T ss_pred             HHHHHHHHHh
Confidence            5556666554

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=99.81  E-value=1.2e-18  Score=128.08  Aligned_cols=138  Identities=18%  Similarity=0.224  Sum_probs=107.4

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHH-hcCCccccCCC-----CCCcHHHHHHHHHHHhcC
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-GLGLEYNMSGL-----TGNTLDSHRLLYLAGQQG   74 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~-~~g~~~~~~~~-----~~~s~~a~r~~~~a~~~g   74 (171)
                      ++|+|+++.|.+.....+..           +..+...++.+.++ ..|++++++..     +.+|..|++++.+|+.++
T Consensus        32 ~~v~~~~~~L~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~s~~a~~~~~aa~~~~  100 (193)
T cd03025          32 IEVELHLGGLLPGNNARQIT-----------KQWRIYVHWHKARIALTGQPFGEDYLELLLFDLDSAPASRAIKAARLQG  100 (193)
T ss_pred             ceEEEEeccccCCCCCCCcc-----------hHHHHHHhHHHHHHHhcCCccCchhHhcccCCCCchHHHHHHHHHHHhC
Confidence            47899988777643321111           12334456666666 88999887642     357999999999999888


Q ss_pred             cchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCe
Q 030793           75 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGK  150 (171)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~  150 (171)
                      +++...++++||+++|.+++++++.++|.+++.++|+|.+  .+.++++ ...+.++++.+. .++||+|||||+|++.
T Consensus       101 ~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~-~~~~~l~~~~~~a~~~gv~g~Ptfvv~~~  178 (193)
T cd03025         101 PERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSD-EAKQAIQEDQKLARELGINGFPTLVLEDD  178 (193)
T ss_pred             cchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcCh-HHHHHHHHHHHHHHHcCCCccCEEEEEeC
Confidence            8789999999999999999999999999999999999986  4667773 566777777664 7899999999999753

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=99.70  E-value=3.6e-16  Score=113.43  Aligned_cols=133  Identities=20%  Similarity=0.213  Sum_probs=103.0

Q ss_pred             CCHHHHHHHhhCChHHHHHHHHHHHHHhcC--CccccCCCC---CCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcC
Q 030793           19 VNKKDFYENKFGSQNQGIIARMTEVFRGLG--LEYNMSGLT---GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQG   93 (171)
Q Consensus        19 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g--~~~~~~~~~---~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g   93 (171)
                      .....|+...|+ .|..+.+.+.++.++++  +.+.+.++.   ..+..+.+++.++...+  ..++++..+|+++|.++
T Consensus        17 ~~i~~f~D~~Cp-~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~aa~a~~aa~~~~--~~~~~~~~lf~~~~~~~   93 (178)
T cd03019          17 PEVIEFFSYGCP-HCYNFEPILEAWVKKLPKDVKFEKVPVVFGGGEGEPLARAFYAAEALG--LEDKLHAALFEAIHEKR   93 (178)
T ss_pred             cEEEEEECCCCc-chhhhhHHHHHHHHhCCCCceEEEcCCccccccchHHHHHHHHHHHcC--cHhhhhHHHHHHHHHhC
Confidence            345566666775 89999999988888764  444444432   22478888888887777  78899999999999999


Q ss_pred             CCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeecc
Q 030793           94 KYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSG  155 (171)
Q Consensus        94 ~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G  155 (171)
                      .++++.+.|.+++.++|+|.+  .+++++ ......++++... .+.||+|||||+|||++.+.+
T Consensus        94 ~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s-~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~~  157 (178)
T cd03019          94 KRLLDPDDIRKIFLSQGVDKKKFDAAYNS-FSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVNP  157 (178)
T ss_pred             CCCCCHHHHHHHHHHhCCCHHHHHHHHhC-HHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEECh
Confidence            999999999999999999987  466766 3455666666554 689999999999999976654

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4.2e-15  Score=106.99  Aligned_cols=138  Identities=15%  Similarity=0.226  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHHHHHhcCCcccc---C------CCCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCHHHH
Q 030793           32 QNQGIIARMTEVFRGLGLEYNM---S------GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFL  102 (171)
Q Consensus        32 ~~~~~~~~~~~~a~~~g~~~~~---~------~~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~~~L  102 (171)
                      ...|.+++.+++++..|.||.-   .      .+..+|.++++++.+|+..+++....++.+|+++++++|+||.+.++|
T Consensus        52 ~r~~i~~hd~rIa~lTGqpFg~~y~~~lL~~~~~v~DSepa~~ai~aA~~l~~r~~l~ml~aIQrA~YvEGrdi~~t~vl  131 (212)
T COG3531          52 FRAYILPHDQRIAQLTGQPFGQAYFDGLLRDTGFVYDSEPACRAILAARLLDGRGRLTMLHAIQRAHYVEGRDITQTEVL  131 (212)
T ss_pred             HHHHhhhhHHHHHHHhCCccchhHHhhhhcccCccccccHHHHHHHHHHHhCcccchHHHHHHHHHHHhccccchhhHHH
Confidence            5678999999999999999951   1      246899999999999998876555899999999999999999999999


Q ss_pred             HHHHHHcCCchh--Hhhhc-CCCCChHHHHHH-HHH-hhCCCCcccEEEEC--Cee-ee-cc--CCCHHHHHHHHHHHh
Q 030793          103 VECARKVGVEGA--AEFLD-DPNSGLNEVHEE-LKK-YSANISGVPHFVLN--GKH-EL-SG--GQPPEVYLRAFQVAA  170 (171)
Q Consensus       103 ~~ia~~~Gld~~--~~~~~-~~~~~~~~v~~~-~~~-~~~gv~gvPtfvv~--~~~-~i-~G--~~~~~~~~~~l~~~~  170 (171)
                      ++++++.||+.+  ...++ + .+......++ ... ++.|+.|+|||.++  |+. .+ .|  ..+++.+...+.+..
T Consensus       132 ~~laa~~GL~~~~f~~~f~~s-~~~~~~~~a~~r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~  209 (212)
T COG3531         132 AELAAAIGLAAEEFDNAFDQS-GAARQAHIADSRRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL  209 (212)
T ss_pred             HHHHHHcCCCHHHHHHhcchh-HHHHHHHHHHHHHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence            999999999976  33443 3 1222222222 222 68999999999985  553 33 35  336677777766543

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=99.64  E-value=4.9e-15  Score=104.65  Aligned_cols=136  Identities=15%  Similarity=0.278  Sum_probs=102.2

Q ss_pred             HHHHhhCChHHHHHHHHHHHHHhcC-CccccCCC---CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCH
Q 030793           24 FYENKFGSQNQGIIARMTEVFRGLG-LEYNMSGL---TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDK   99 (171)
Q Consensus        24 ~~~~~~g~~~~~~~~~~~~~a~~~g-~~~~~~~~---~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~   99 (171)
                      +....|+ .|..+.+.+.++.+..| +.+.+..+   ..++..+++++.++...+++.++++++++|..     .+..+.
T Consensus        12 f~D~~Cp-~C~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~-----~~~~~~   85 (154)
T cd03023          12 FFDYNCG-YCKKLAPELEKLLKEDPDVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMAT-----RGRLNE   85 (154)
T ss_pred             EECCCCh-hHHHhhHHHHHHHHHCCCceEEEEeCCccCcchHHHHHHHHHHHHhChhHHHHHHHHHHhc-----CCCCCH
Confidence            3444554 78888899998877766 34444333   34567778877777655555888999988873     235678


Q ss_pred             HHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793          100 EFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~  167 (171)
                      +.|.+++++.|+|.+  .+++++ +...+.++++... .++||+|||||+|||+ .+.|..+++.|.++|+
T Consensus        86 ~~l~~~a~~~gl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~-~~~G~~~~~~l~~~i~  154 (154)
T cd03023          86 ESLLRIAKKAGLDEAKLKKDMDD-PEIEATIDKNRQLARALGITGTPAFIIGDT-VIPGAVPADTLKEAID  154 (154)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhhC-hHHHHHHHHHHHHHHHcCCCcCCeEEECCE-EecCCCCHHHHHHHhC
Confidence            889999999999987  567776 3566677776665 6899999999999997 6899999999998873

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=99.60  E-value=4.6e-15  Score=107.97  Aligned_cols=105  Identities=24%  Similarity=0.308  Sum_probs=69.6

Q ss_pred             CCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-
Q 030793           58 GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-  134 (171)
Q Consensus        58 ~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-  134 (171)
                      .+|.+|++++.||+.+|+++..+|..+|+++++.+++++++.++|.++|+++|||.+  .+.+.| +.....+.++++. 
T Consensus        62 ~~~y~a~la~kAA~~qg~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S-~~~~~~~~~D~~la  140 (176)
T PF13743_consen   62 SSSYPACLAYKAAQLQGKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHS-DEAKQAFQEDQQLA  140 (176)
T ss_dssp             S--HHHHHHHHHHHTTT-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhC-hHHHHHHHHHHHHH
Confidence            567899999999999998889999999999999999999999999999999999998  566777 3566677777765 


Q ss_pred             hhCCCCcccEEEECC------eeeeccCCCHHHHH
Q 030793          135 YSANISGVPHFVLNG------KHELSGGQPPEVYL  163 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~------~~~i~G~~~~~~~~  163 (171)
                      +++||.|+||+||.+      ..++.|..+++.++
T Consensus       141 ~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~~  175 (176)
T PF13743_consen  141 REMGITGFPTLVIFNENNEEYGILIEGYYSYEVYE  175 (176)
T ss_dssp             HHTT-SSSSEEEEE---------------------
T ss_pred             HHcCCCCCCEEEEEecccccccccccccccccccC
Confidence            799999999999854      35678988887765

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=99.60  E-value=1.6e-14  Score=107.74  Aligned_cols=145  Identities=16%  Similarity=0.143  Sum_probs=101.5

Q ss_pred             CHHHHHHHhhCChHHHHHHHH---HHHHHhcC--CccccCC--CCCC-cHHHHHHHHHHHhcCcchHHHHHHHHHHHHhh
Q 030793           20 NKKDFYENKFGSQNQGIIARM---TEVFRGLG--LEYNMSG--LTGN-TLDSHRLLYLAGQQGLDKQHNLAEELFLGYFT   91 (171)
Q Consensus        20 ~~~~~~~~~~g~~~~~~~~~~---~~~a~~~g--~~~~~~~--~~~~-s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~   91 (171)
                      ...+|+.+.|+ +|..+.+.+   ..|.+.++  +.+....  +..+ +..+.+++.+|...+  ...++++++|++++.
T Consensus        40 ~VvEffdy~Cp-hC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~~a~~~a~~~~--~~~k~~~~lf~~i~~  116 (207)
T PRK10954         40 QVLEFFSFYCP-HCYQFEEVYHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALG--VEDKVTPPLFEGVQK  116 (207)
T ss_pred             eEEEEeCCCCc-cHHHhcccccchHHHHHhCCCCCeEEEecccccchhhHHHHHHHHHHHHhC--cHHHHHHHHHHHHHc
Confidence            35577777775 888887654   66777654  3333322  2222 244455555666666  567788899999865


Q ss_pred             cCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCC--------CHH
Q 030793           92 QGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQ--------PPE  160 (171)
Q Consensus        92 ~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~--------~~~  160 (171)
                       ++++.+.+.|.+++.+.|+|.+  .+++++. ...+.++++.+. .+.||+|||||+|||+|.+....        +.+
T Consensus       117 -~~~~~~~~~L~~~a~~~Gld~~~f~~~l~s~-~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~~~~~~~~~~~~  194 (207)
T PRK10954        117 -TQTIQSAADIRDVFIKAGVKGEDYDAAWNSF-VVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQGMDTSSMDVYVQ  194 (207)
T ss_pred             -cCCCCCHHHHHHHHHHcCCCHHHHHHHHhCh-HHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEccccccccchhhhHH
Confidence             5688999999999999999987  6788873 566677776654 68999999999999998775222        456


Q ss_pred             HHHHHHHHH
Q 030793          161 VYLRAFQVA  169 (171)
Q Consensus       161 ~~~~~l~~~  169 (171)
                      .+.+.++-+
T Consensus       195 ~~~~~i~~L  203 (207)
T PRK10954        195 QYADVVKFL  203 (207)
T ss_pred             HHHHHHHHH
Confidence            666666543

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=99.09  E-value=6.7e-10  Score=79.14  Aligned_cols=135  Identities=15%  Similarity=0.225  Sum_probs=83.8

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhc----CCccccCCCCCC---cHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCC
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGL----GLEYNMSGLTGN---TLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKY   95 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~----g~~~~~~~~~~~---s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~   95 (171)
                      .|....|+ .|..+...+..+.+.+    .+.+.+..++.+   +..+..++.++...+ +..+.+.+.+|+.    ..+
T Consensus        18 ~f~d~~Cp-~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~----~~~   91 (162)
T PF13462_consen   18 EFFDFQCP-HCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQG-KYFWFFHELLFSQ----QEN   91 (162)
T ss_dssp             EEE-TTSH-HHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH----CHS
T ss_pred             EEECCCCH-hHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHh-HHHHHHHHHHHHh----hhc
Confidence            34444454 7888888887776665    244445444322   355666666666666 4555555555554    222


Q ss_pred             CCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793           96 IGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  168 (171)
Q Consensus        96 i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~  168 (171)
                      ....   ..+++..|.+..  ..++++ ......+....+. .+.||.|||||+|||++ +.|..+++.|.++|++
T Consensus        92 ~~~~---~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~tPt~~inG~~-~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   92 FENK---KDIAANAGGSNEQFNKCLNS-DEIKAQLEADSQLARQLGITGTPTFFINGKY-VVGPYTIEELKELIDK  162 (162)
T ss_dssp             TSSH---HHHHHHTTSHHHHHHHHHTS-HHHHHHHHHHHHHHHHHT-SSSSEEEETTCE-EETTTSHHHHHHHHHH
T ss_pred             cchh---HHHHHHcCCCHHHHHHHhhc-hHHHHHHHHHHHHHHHcCCccccEEEECCEE-eCCCCCHHHHHHHHcC
Confidence            3333   334455555543  456666 3455556655544 68999999999999996 7888999999999875

...

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.6e-08  Score=77.03  Aligned_cols=146  Identities=13%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcC-CccccCC--C-CCCcHHHHHHHHHHHh---cCcchHHHHHHHHHHHHhhcCCC
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLG-LEYNMSG--L-TGNTLDSHRLLYLAGQ---QGLDKQHNLAEELFLGYFTQGKY   95 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g-~~~~~~~--~-~~~s~~a~r~~~~a~~---~g~~~~~~~~~~l~~a~~~~g~~   95 (171)
                      .|....|+ .|+...+.+.+.....| +.+.+..  + ...+..++++..+++.   ++..+++.|++.||+..-.....
T Consensus        90 ~f~d~~Cp-~C~~~~~~l~~~~i~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~  168 (244)
T COG1651          90 EFFDYTCP-YCKEAFPELKKKYIDDGKVRLVLREFPFLDPACPYCRRAAQAARCAADQGIVRYWAFHDALFGSQAEAWAA  168 (244)
T ss_pred             EEecCcCc-cHHHHHHHHHHHhhhcCCCceEEEEeecCCCCcHHHHHHHHHHHHhccccchhHHHHHHHHhhccccchhh
Confidence            34445554 78888888888665555 3355443  3 2344435555555544   33235999999999965333222


Q ss_pred             CCCHHHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHhC
Q 030793           96 IGDKEFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus        96 i~~~~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~~  171 (171)
                      ..........+...+.+.. ..++.. ....+.+.++.+. .++||.|||||+++|+ .+.|..+.+++.++|+.+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~a~~~gv~gTPt~~v~~~-~~~g~~~~~~l~~~i~~~~~  244 (244)
T COG1651         169 SILCAKDLAKADLAALDEGKKAKLNQ-KACDALIAKNYKLAQQLGVNGTPTFIVNGK-LVPGLPDLDELKAIIDEALK  244 (244)
T ss_pred             hhhhhhhhhhhhHHHHHhhhhhccCh-HHHHHHHHHHHHHHHhcCCCcCCeEEECCe-eecCCCCHHHHHHHHHHhhC
Confidence            2111111112222222111 122221 1233455565554 7899999999999998 78999999999999988753

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=98.14  E-value=5.5e-06  Score=63.60  Aligned_cols=119  Identities=9%  Similarity=0.012  Sum_probs=70.9

Q ss_pred             HHHHhhCChHHHHHHHHHHHHHhcCCccccCC---CCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCHH
Q 030793           24 FYENKFGSQNQGIIARMTEVFRGLGLEYNMSG---LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKE  100 (171)
Q Consensus        24 ~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~---~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~~  100 (171)
                      |.+..|+ .|+.+...+..+.+...+.+.+-+   +.++|....+.+.++....  +.+..++..+..            
T Consensus       124 FtDp~Cp-yC~kl~~~l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~--~a~~~~~~~~~~------------  188 (251)
T PRK11657        124 FADPNCP-YCKQFWQQARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPA--KALQEYEASGGK------------  188 (251)
T ss_pred             EECCCCh-hHHHHHHHHHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHH--HHHHHHHHhhhc------------
Confidence            4455665 688888888887766446665433   2356655555555554333  444444433321            


Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEEC---Cee-eeccCCCHHHHHHHHHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLN---GKH-ELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~---~~~-~i~G~~~~~~~~~~l~~  168 (171)
                              .|+....  ..+ .+..+.++++.+. .++||+|||+||+.   |+. .+.|+.+.+.|.+.|..
T Consensus       189 --------~~~~~~~--~~~-~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~  250 (251)
T PRK11657        189 --------LGLKPPA--SIP-AAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP  250 (251)
T ss_pred             --------cCCCccc--cCC-HHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence                    2332211  011 1233456666665 78999999999994   432 47899999999988753

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.86  E-value=0.00013  Score=46.59  Aligned_cols=73  Identities=25%  Similarity=0.343  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHHH--HhcCCccccCCC--CC----CcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 030793           32 QNQGIIARMTEVF--RGLGLEYNMSGL--TG----NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLV  103 (171)
Q Consensus        32 ~~~~~~~~~~~~a--~~~g~~~~~~~~--~~----~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~~~L~  103 (171)
                      .|..+.+.+.++.  ...++.+.+.++  ..    .+..+++++.++...+  ..+++.+++                  
T Consensus        11 ~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l------------------   70 (98)
T cd02972          11 YCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG--KFEALHEAL------------------   70 (98)
T ss_pred             hHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcC--cHHHHHHHH------------------
Confidence            6677777777774  344566666543  22    4788888888887665  778888888                  


Q ss_pred             HHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECC
Q 030793          104 ECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNG  149 (171)
Q Consensus       104 ~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~  149 (171)
                                               +......+.|++||||++++|
T Consensus        71 -------------------------~~~~~~~~~g~~g~Pt~v~~~   91 (98)
T cd02972          71 -------------------------ADTALARALGVTGTPTFVVNG   91 (98)
T ss_pred             -------------------------HHHHHHHHcCCCCCCEEEECC
Confidence                                     112223579999999999999

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.55  E-value=0.00016  Score=54.92  Aligned_cols=43  Identities=21%  Similarity=0.336  Sum_probs=35.0

Q ss_pred             HHHHHHHH-hhCCCCcccEEEE-CCeeeeccCCCHHHHHHHHHHHh
Q 030793          127 EVHEELKK-YSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       127 ~v~~~~~~-~~~gv~gvPtfvv-~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+++..+. .++||+|||||++ ||+ .+.|+.+.+.|.+.|++..
T Consensus       187 ~v~~~~~la~~lgi~gTPtiv~~~G~-~~~G~~~~~~L~~~l~~~~  231 (232)
T PRK10877        187 DIADHYALGVQFGVQGTPAIVLSNGT-LVPGYQGPKEMKAFLDEHQ  231 (232)
T ss_pred             hHHHhHHHHHHcCCccccEEEEcCCe-EeeCCCCHHHHHHHHHHcc
Confidence            35555553 6899999999999 666 6899999999999998764

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.43  E-value=0.00026  Score=44.26  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=31.1

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~  169 (171)
                      .++|+.|+||++++|+..+.|..+.+.+.+.|+++
T Consensus        47 ~~~~v~~vPt~~~~g~~~~~G~~~~~~l~~~l~~~   81 (82)
T TIGR00411        47 MEYGIMAVPAIVINGDVEFIGAPTKEELVEAIKKR   81 (82)
T ss_pred             HHcCCccCCEEEECCEEEEecCCCHHHHHHHHHhh
Confidence            46999999999999987788999999999998875

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.32  E-value=0.0014  Score=48.29  Aligned_cols=40  Identities=20%  Similarity=0.324  Sum_probs=29.7

Q ss_pred             HHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHH
Q 030793          127 EVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAF  166 (171)
Q Consensus       127 ~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l  166 (171)
                      .+.+.... .++||.|||||++++...+.|+.+.+.|.+.|
T Consensus       157 ~i~~~~~l~~~~gi~gtPtii~~~G~~~~G~~~~~~l~~~L  197 (197)
T cd03020         157 PVAANLALGRQLGVNGTPTIVLADGRVVPGAPPAAQLEALL  197 (197)
T ss_pred             hHHHHHHHHHHcCCCcccEEEECCCeEecCCCCHHHHHhhC
Confidence            34444443 68999999999996444689999988887653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.06  E-value=0.00076  Score=42.04  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=25.0

Q ss_pred             hhCCCCcccEEEECCeeeecc-CCCHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSG-GQPPEVYLRAFQ  167 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G-~~~~~~~~~~l~  167 (171)
                      .++||.++|++++||+....| ..+.+++.+.|+
T Consensus        43 ~~ygv~~vPalvIng~~~~~G~~p~~~el~~~l~   76 (76)
T PF13192_consen   43 EKYGVMSVPALVINGKVVFVGRVPSKEELKELLE   76 (76)
T ss_dssp             HHTT-SSSSEEEETTEEEEESS--HHHHHHHHHH
T ss_pred             HHcCCCCCCEEEECCEEEEEecCCCHHHHHHHhC
Confidence            479999999999999987889 555677777764

...

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=96.35  E-value=0.0039  Score=38.81  Aligned_cols=57  Identities=14%  Similarity=0.297  Sum_probs=36.1

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCC-CHHHHHHHH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  166 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~-~~~~~~~~l  166 (171)
                      +.+.+++++.|.+...-.+++       ..   .+.++|+.|+||+++||+..+.|.. +.+++.+.+
T Consensus        18 ~~~~~~~~e~~~~~~~~~v~~-------~~---~a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~~l   75 (76)
T TIGR00412        18 KNVKKAVEELGIDAEFEKVTD-------MN---EILEAGVTATPGVAVDGELVIMGKIPSKEEIKEIL   75 (76)
T ss_pred             HHHHHHHHHcCCCeEEEEeCC-------HH---HHHHcCCCcCCEEEECCEEEEEeccCCHHHHHHHh
Confidence            456778888776533111111       11   1346899999999999987777864 446666654

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=96.20  E-value=0.0067  Score=39.03  Aligned_cols=29  Identities=31%  Similarity=0.250  Sum_probs=23.7

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYL  163 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~  163 (171)
                      .++||.++|||++||+...+|..+.+++.
T Consensus        59 ~~~~V~~vPt~vidG~~~~~G~~~~~e~~   87 (89)
T cd03026          59 EERGIMSVPAIFLNGELFGFGRMTLEEIL   87 (89)
T ss_pred             HHcCCccCCEEEECCEEEEeCCCCHHHHh
Confidence            47999999999999987678877766554

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=96.09  E-value=0.014  Score=40.45  Aligned_cols=36  Identities=14%  Similarity=0.149  Sum_probs=30.2

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  ||++  .+.|.++.+.+.+.|+++.
T Consensus        85 ~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L  124 (132)
T PRK11509         85 DRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_pred             HHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHh
Confidence            4799999999987  6775  3679999999999998764

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=95.91  E-value=0.0091  Score=39.52  Aligned_cols=32  Identities=28%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             hhCCCCcccEEEEC---Ce--eeeccCCCHHHHHHHH
Q 030793          135 YSANISGVPHFVLN---GK--HELSGGQPPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv~---~~--~~i~G~~~~~~~~~~l  166 (171)
                      ..+||.|+||+++-   |+  +.+.|+.+.++|.+.|
T Consensus        76 ~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   76 QRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             HHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             HHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            57999999999984   44  2468999999998765

...

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=95.14  E-value=0.045  Score=37.27  Aligned_cols=36  Identities=6%  Similarity=0.057  Sum_probs=29.1

Q ss_pred             hhCCCCcccEEEE--CCe-eeeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~-~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  ||+ ..+.|+++.+.+.+.|+++.
T Consensus        81 ~~~~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          81 KKLGLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             HHcCCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence            4799999999976  565 23579999999999988763

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria

Probab=94.45  E-value=0.11  Score=35.06  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=29.8

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~  169 (171)
                      ..+||.-+|.+|||++|.+.|..+...-...+.+.
T Consensus        77 w~lgi~k~PAVVfD~~~VVYG~tDV~~A~~~~~~~  111 (114)
T PF07511_consen   77 WSLGITKYPAVVFDDRYVVYGETDVARALARIEQW  111 (114)
T ss_pred             HHhCccccCEEEEcCCeEEecccHHHHHHHHHHHH
Confidence            68999999999999999999998887666666543

Members belong to extended genomic regions that appear to be spread by conjugative transfer.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.33  E-value=0.063  Score=38.13  Aligned_cols=36  Identities=33%  Similarity=0.567  Sum_probs=28.7

Q ss_pred             HhhCCCCcccEEEEC---Ce--eeeccCCCHHHHHHHHHHH
Q 030793          134 KYSANISGVPHFVLN---GK--HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       134 ~~~~gv~gvPtfvv~---~~--~~i~G~~~~~~~~~~l~~~  169 (171)
                      ++.++|.|+||||+-   |+  +.+.|+.|++.|...++-+
T Consensus       108 a~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV  148 (182)
T COG2143         108 AQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV  148 (182)
T ss_pred             HHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence            367999999999984   33  3468999999999888643

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=94.32  E-value=0.055  Score=32.39  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             hCCCCcccEEEECCeeeeccCCCHHHHHHHH
Q 030793          136 SANISGVPHFVLNGKHELSGGQPPEVYLRAF  166 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l  166 (171)
                      ..|+.++|+++++|+ .+.|. +.+.+.+.|
T Consensus        45 ~~~~~~vP~~~~~~~-~~~g~-~~~~i~~~i   73 (74)
T TIGR02196        45 VLGQRGVPVIVIGHK-IIVGF-DPEKLDQLL   73 (74)
T ss_pred             HhCCCcccEEEECCE-EEeeC-CHHHHHHHh
Confidence            579999999999987 57785 566666654

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family

Probab=94.14  E-value=0.14  Score=34.42  Aligned_cols=34  Identities=15%  Similarity=0.251  Sum_probs=28.7

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~  168 (171)
                      ..+||..+|.+|||++|.+.|..+...-...+++
T Consensus        78 w~lGi~k~PAVV~D~~~VVYG~~DV~~A~~~~~~  111 (113)
T TIGR03757        78 WQLGVTKIPAVVVDRRYVVYGETDVARALALIQQ  111 (113)
T ss_pred             HHcCCccCCEEEEcCCeEEecCccHHHHHHHHHh
Confidence            6899999999999999999998887766555543

Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=93.90  E-value=0.12  Score=34.64  Aligned_cols=36  Identities=11%  Similarity=0.076  Sum_probs=28.5

Q ss_pred             hhCCCCcccEEEEC------CeeeeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVLN------GKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv~------~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.++||+++-      ++..+.|..+-.+|.+.|..+.
T Consensus        69 ~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~  110 (113)
T cd02975          69 EKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIV  110 (113)
T ss_pred             HHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHH
Confidence            46999999999983      3335679888889999888765

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PRK10996 thioredoxin 2; Provisional

Probab=93.60  E-value=0.15  Score=35.38  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=28.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+++
T Consensus       100 ~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        100 ARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             HhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence            3689999999987  4653  357999999999998875

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=93.57  E-value=0.067  Score=31.90  Aligned_cols=21  Identities=38%  Similarity=0.602  Sum_probs=16.8

Q ss_pred             hhCCCCcccEEEECCeeeecc
Q 030793          135 YSANISGVPHFVLNGKHELSG  155 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G  155 (171)
                      .++|+.++||++++|+....|
T Consensus        46 ~~~~i~~vPti~i~~~~~~~g   66 (67)
T cd02973          46 DEYGVMSVPAIVINGKVEFVG   66 (67)
T ss_pred             HHcCCcccCEEEECCEEEEec
Confidence            468999999999999854444

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=0.18  Score=35.57  Aligned_cols=37  Identities=24%  Similarity=0.365  Sum_probs=30.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .+++|..+||+++  ||+-  .+.|+.+.+.+.+.|++..+
T Consensus       109 ~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  109 EDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             hhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            4799999999987  5642  46899999999999998753

>PRK09381 trxA thioredoxin; Provisional

Probab=92.65  E-value=0.3  Score=31.98  Aligned_cols=37  Identities=19%  Similarity=0.275  Sum_probs=29.0

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .+++|.++||+++  +|+.  ...|..+.+.+.+.|+...+
T Consensus        69 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~~  109 (109)
T PRK09381         69 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA  109 (109)
T ss_pred             HhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence            3689999999987  5653  35688889999999887654

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=92.25  E-value=0.17  Score=37.86  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=28.1

Q ss_pred             hhCCCCcccEEEECCeee-eccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHE-LSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~-i~G~~~~~~~~~~l~~  168 (171)
                      .++||.++||++++++-. +.|..+.++|.+.|..
T Consensus       180 ~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       180 EKYGVMSVPKIVINKGVEEFVGAYPEEQFLEYILS  214 (215)
T ss_pred             HHhCCccCCEEEEecCCEEEECCCCHHHHHHHHHh
Confidence            479999999999985433 7899999999888765

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=91.99  E-value=0.37  Score=33.65  Aligned_cols=36  Identities=28%  Similarity=0.566  Sum_probs=28.0

Q ss_pred             hhCCCCcccEEEE-C--Cee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL-N--GKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv-~--~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++ +  |+.  .+.|..+.++|.+.|+++.
T Consensus        70 ~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~  110 (142)
T cd02950          70 DRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALV  110 (142)
T ss_pred             HHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            4689999999986 2  442  3579889999999988765

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=91.66  E-value=0.31  Score=31.74  Aligned_cols=33  Identities=15%  Similarity=0.247  Sum_probs=24.6

Q ss_pred             hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l~~  168 (171)
                      .+++|.++|||++  +|+  ..+.|. +.+.+.+.|++
T Consensus        65 ~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          65 KRYRGKCEPTFLFYKNGELVAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             HHcCCCcCcEEEEEECCEEEEEEecC-ChHHHHHHHhh
Confidence            5799999999987  454  235675 67888888765

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=91.61  E-value=0.29  Score=32.46  Aligned_cols=34  Identities=15%  Similarity=0.084  Sum_probs=26.0

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~  168 (171)
                      .++||.++||+++  +|+.  .+.|..+.+.+.+.|++
T Consensus        73 ~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          73 RKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             HHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence            4689999999985  4553  24687888888888875

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PHA02278 thioredoxin-like protein

Probab=91.57  E-value=0.33  Score=32.03  Aligned_cols=31  Identities=13%  Similarity=0.155  Sum_probs=23.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRA  165 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~  165 (171)
                      .+++|.|+|||++  +|+.  .+.|..+.+.+.+.
T Consensus        66 ~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         66 KLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             HHCCCccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence            4799999999987  5653  36788888777653

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=91.48  E-value=0.52  Score=30.07  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=27.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~  168 (171)
                      .+++|.++||+++  +|+.  .+.|..+.+.+.+.|++
T Consensus        65 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   65 KKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             HHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence            4699999999987  4543  45788899999998875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=91.21  E-value=0.35  Score=32.58  Aligned_cols=36  Identities=22%  Similarity=0.460  Sum_probs=27.8

Q ss_pred             hhCCCCcccEEEE-C---Cee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL-N---GKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv-~---~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+++|.|+||+++ +   |+.  .+.|+.+.+.|.+.|+.+.
T Consensus        78 ~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~  119 (125)
T cd02951          78 RKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ  119 (125)
T ss_pred             HHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence            4689999999876 3   242  3579889999999988764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=90.98  E-value=0.93  Score=27.30  Aligned_cols=62  Identities=11%  Similarity=0.087  Sum_probs=32.9

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~  167 (171)
                      .+..+..+.|++-..-.++.   . ....+.+.....|+.++|+++++|.-.+. ..+..++.+.|+
T Consensus        15 ~~~~~L~~~~~~~~~idi~~---~-~~~~~~~~~~~~~~~~vP~i~~~~g~~l~-~~~~~~~~~~l~   76 (77)
T TIGR02200        15 QLMRTLDKLGAAYEWVDIEE---D-EGAADRVVSVNNGNMTVPTVKFADGSFLT-NPSAAQVKAKLQ   76 (77)
T ss_pred             HHHHHHHHcCCceEEEeCcC---C-HhHHHHHHHHhCCCceeCEEEECCCeEec-CCCHHHHHHHhh
Confidence            34556666777543111111   1 22333333345689999999886543444 445556665553

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>TIGR01068 thioredoxin thioredoxin

Probab=90.93  E-value=0.5  Score=29.95  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.++|++++  +|+  ..+.|..+.+.+...|++.
T Consensus        62 ~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        62 AKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             HHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence            3689999999987  554  2356888888999888764

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=90.85  E-value=0.8  Score=28.12  Aligned_cols=58  Identities=12%  Similarity=0.096  Sum_probs=34.2

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYL  163 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~  163 (171)
                      .....+.++.|++-....++..    ....+++.. ..|..++|+++++|+ .+.|..+...+.
T Consensus        13 ~~a~~~L~~~~i~~~~~di~~~----~~~~~~~~~-~~g~~~vP~i~i~g~-~igg~~~~~~~~   70 (79)
T TIGR02181        13 TRAKALLSSKGVTFTEIRVDGD----PALRDEMMQ-RSGRRTVPQIFIGDV-HVGGCDDLYALD   70 (79)
T ss_pred             HHHHHHHHHcCCCcEEEEecCC----HHHHHHHHH-HhCCCCcCEEEECCE-EEcChHHHHHHH
Confidence            3456677778887652122221    233333332 357899999999998 476765554443

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=90.72  E-value=1  Score=27.16  Aligned_cols=57  Identities=16%  Similarity=0.135  Sum_probs=31.7

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCC-cccEEEECCeeeeccCCCHHHH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANIS-GVPHFVLNGKHELSGGQPPEVY  162 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~-gvPtfvv~~~~~i~G~~~~~~~  162 (171)
                      ...+.+..+.|++-..-.++.   . ....+.+.. ..|.. ++|+++++|+ .+.|..+...+
T Consensus        14 ~~ak~~L~~~~i~~~~i~i~~---~-~~~~~~~~~-~~~~~~~vP~v~i~g~-~igg~~~~~~~   71 (75)
T cd03418          14 VRAKALLDKKGVDYEEIDVDG---D-PALREEMIN-RSGGRRTVPQIFIGDV-HIGGCDDLYAL   71 (75)
T ss_pred             HHHHHHHHHCCCcEEEEECCC---C-HHHHHHHHH-HhCCCCccCEEEECCE-EEeChHHHHHH
Confidence            345666777888765212222   1 233333322 24545 9999999998 47665554433

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=90.57  E-value=0.42  Score=32.09  Aligned_cols=29  Identities=17%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYL  163 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~  163 (171)
                      .++||.|+|||++  +|+.  .+.|..+-+++.
T Consensus        77 ~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          77 ARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             HHcCCCcCCEEEEEECCEEEEEEeCccCHHHHh
Confidence            4699999999987  5663  357888877765

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=90.26  E-value=0.33  Score=41.56  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=27.8

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l  166 (171)
                      .++||.+||++++||+....|..+.+++.+.|
T Consensus       523 ~~~~v~~vP~~~i~~~~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       523 DEYGIMSVPAIVVDDQQVYFGKKTIEEMLELI  554 (555)
T ss_pred             HhCCceecCEEEECCEEEEeeCCCHHHHHHhh
Confidence            37999999999999987778988988888765

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=89.99  E-value=0.52  Score=29.98  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=24.0

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l  166 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.+...|
T Consensus        60 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          60 QQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQML   95 (96)
T ss_pred             HHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHh
Confidence            3689999999986  4543  356888888887765

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=89.60  E-value=0.51  Score=30.32  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=24.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l  166 (171)
                      .++||.|+||+++  +|+.  .+.|..+.++|.+.|
T Consensus        61 ~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          61 EAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             HHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhh
Confidence            3689999999987  4542  357888888887765

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=89.54  E-value=0.73  Score=29.94  Aligned_cols=35  Identities=14%  Similarity=0.224  Sum_probs=26.5

Q ss_pred             hhCCCCcccEEEE-CCe--eeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL-NGK--HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv-~~~--~~i~G~~~~~~~~~~l~~~  169 (171)
                      .+++|.++||+++ +|.  +...|..+.+.+.+.+++.
T Consensus        66 ~~~~I~~~Pt~~l~~~~~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          66 SEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             hhcCCccccEEEEEcCCCceeecCCCCHHHHHHHHHhh
Confidence            3689999999976 432  3457888889888888764

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=89.31  E-value=1.6  Score=27.28  Aligned_cols=58  Identities=21%  Similarity=0.286  Sum_probs=33.5

Q ss_pred             HHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHH
Q 030793          103 VECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLR  164 (171)
Q Consensus       103 ~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~  164 (171)
                      .++..+.|++-..-.+.. ... .+.+ +......|...||.++++|+ .+.|..+.+.+..
T Consensus        18 k~~L~~~g~~~~~i~~~~-~~~-~~~~-~~~~~~~g~~tvP~I~i~~~-~igg~~d~~~~~~   75 (80)
T COG0695          18 KRLLDRKGVDYEEIDVDD-DEP-EEAR-EMVKRGKGQRTVPQIFIGGK-HVGGCDDLDALEA   75 (80)
T ss_pred             HHHHHHcCCCcEEEEecC-CcH-HHHH-HHHHHhCCCCCcCEEEECCE-EEeCcccHHHHHh
Confidence            445567788765222322 111 1111 22222349999999999998 5777667766654

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=89.15  E-value=0.74  Score=33.48  Aligned_cols=64  Identities=19%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCccc-EEEEC--Ce--eeeccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVP-HFVLN--GK--HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvP-tfvv~--~~--~~i~G~~~~~~~~~~l~~~~  170 (171)
                      +.+...++.++.|++-.. .+.++.   ..+     ...+|+.|+| ||+++  |+  +...|..+.+.+.+.|+.+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~-~~~D~~---~~~-----~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        108 DRQKAISWLKELGNPYAL-SLFDGD---GML-----GLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CHHHHHHHHHHcCCCCce-EEEcCC---ccH-----HHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            345566777777765321 122211   111     1368999999 67786  43  34578888888888877654

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=89.04  E-value=1.6  Score=26.34  Aligned_cols=57  Identities=19%  Similarity=0.246  Sum_probs=32.9

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLR  164 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~  164 (171)
                      ....+.++.|++-....+...    ....+.+.  +.|..+||.++++|+..+.|. +++.+.+
T Consensus        14 ~ak~~L~~~~i~~~~~di~~~----~~~~~~~~--~~g~~~vP~v~~~g~~~~~G~-~~~~~~~   70 (72)
T TIGR02194        14 MTKKALEEHGIAFEEINIDEQ----PEAIDYVK--AQGFRQVPVIVADGDLSWSGF-RPDKLKA   70 (72)
T ss_pred             HHHHHHHHCCCceEEEECCCC----HHHHHHHH--HcCCcccCEEEECCCcEEecc-CHHHHHh
Confidence            345566677887652122221    22333332  468899999999886446664 5565554

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=88.93  E-value=0.55  Score=29.45  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=17.2

Q ss_pred             hCCCCcccEEEECCeeeeccCCCH
Q 030793          136 SANISGVPHFVLNGKHELSGGQPP  159 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~~~  159 (171)
                      ..++.+||+++++|+ .+.|..+.
T Consensus        53 ~~~~~~vP~ifi~g~-~igg~~~~   75 (85)
T PRK11200         53 GKPVETVPQIFVDQK-HIGGCTDF   75 (85)
T ss_pred             CCCCCcCCEEEECCE-EEcCHHHH
Confidence            457789999999998 46665443

>TIGR02180 GRX_euk Glutaredoxin

Probab=88.91  E-value=1.4  Score=27.02  Aligned_cols=54  Identities=26%  Similarity=0.268  Sum_probs=29.2

Q ss_pred             HHHHHHHHcCCch--hHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCC
Q 030793          101 FLVECARKVGVEG--AAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ  157 (171)
Q Consensus       101 ~L~~ia~~~Gld~--~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~  157 (171)
                      .+..+..+.|++.  ..-.++. +.....+.+.+. ...|+.++|+++++|+ .+.|..
T Consensus        14 ~~~~~L~~~~i~~~~~~~~v~~-~~~~~~~~~~l~-~~~g~~~vP~v~i~g~-~igg~~   69 (84)
T TIGR02180        14 KAKEILAKLNVKPAYEVVELDQ-LSNGSEIQDYLE-EITGQRTVPNIFINGK-FIGGCS   69 (84)
T ss_pred             HHHHHHHHcCCCCCCEEEEeeC-CCChHHHHHHHH-HHhCCCCCCeEEECCE-EEcCHH
Confidence            4555666777662  2111222 111122333222 3468899999999998 476643

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=88.81  E-value=1  Score=26.06  Aligned_cols=46  Identities=26%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCee
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKH  151 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~  151 (171)
                      ...++..+.|++-+.-.+++.    ...++.+... .|..++|+++++|++
T Consensus        14 ~~~~~L~~~~i~y~~~dv~~~----~~~~~~l~~~-~g~~~~P~v~i~g~~   59 (60)
T PF00462_consen   14 KAKEFLDEKGIPYEEVDVDED----EEAREELKEL-SGVRTVPQVFIDGKF   59 (60)
T ss_dssp             HHHHHHHHTTBEEEEEEGGGS----HHHHHHHHHH-HSSSSSSEEEETTEE
T ss_pred             HHHHHHHHcCCeeeEcccccc----hhHHHHHHHH-cCCCccCEEEECCEE
Confidence            355667778887652223331    2333333332 299999999999984

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=88.60  E-value=0.62  Score=28.26  Aligned_cols=54  Identities=22%  Similarity=0.151  Sum_probs=31.8

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP  159 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~  159 (171)
                      .....++.+.|++-..-.+...    ....+++.. ..|-.++|.+++||+ .|.|..+.
T Consensus        15 ~ka~~~L~~~gi~~~~~di~~~----~~~~~el~~-~~g~~~vP~v~i~~~-~iGg~~~~   68 (73)
T cd03027          15 TAVRLFLREKGLPYVEINIDIF----PERKAELEE-RTGSSVVPQIFFNEK-LVGGLTDL   68 (73)
T ss_pred             HHHHHHHHHCCCceEEEECCCC----HHHHHHHHH-HhCCCCcCEEEECCE-EEeCHHHH
Confidence            4456677888887652122221    233333333 246688999999998 47665443

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=88.30  E-value=0.84  Score=34.05  Aligned_cols=35  Identities=14%  Similarity=0.215  Sum_probs=26.3

Q ss_pred             hhCCCCcccEEEE--CCee---eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH---ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~---~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.++|||++  +|+.   ...|..+.+.|.+.|+..
T Consensus        71 ~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~  110 (215)
T TIGR02187        71 EKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDI  110 (215)
T ss_pred             HHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHH
Confidence            4799999999988  3443   356888888887777654

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=88.10  E-value=0.96  Score=28.75  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=26.0

Q ss_pred             hhCCCCcccEEEE-C-Ce--eeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL-N-GK--HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv-~-~~--~~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.++|++++ . |+  +.+.|..+.+.|...|++.
T Consensus        63 ~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        63 SRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             HhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhc
Confidence            4689999999965 2 33  3467888888888877753

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PHA02125 thioredoxin-like protein

Probab=87.90  E-value=0.84  Score=27.93  Aligned_cols=31  Identities=16%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             hhCCCCcccEEEECCe--eeeccCC-CHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGK--HELSGGQ-PPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~--~~i~G~~-~~~~~~~~l  166 (171)
                      .+++|.++|||+ +|+  ..+.|.. +...+++.|
T Consensus        40 ~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~~~   73 (75)
T PHA02125         40 AKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKEKL   73 (75)
T ss_pred             HHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHHHh
Confidence            468999999998 554  2466763 335565544

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=87.59  E-value=0.59  Score=30.32  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=24.5

Q ss_pred             hhCCCCcccEEEE-C---Ce--eeeccCCCHHHHHHHHH
Q 030793          135 YSANISGVPHFVL-N---GK--HELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       135 ~~~gv~gvPtfvv-~---~~--~~i~G~~~~~~~~~~l~  167 (171)
                      .++||.|+||+++ +   |+  ..+.|..+.+.|.+.|+
T Consensus        66 ~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          66 KRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             HHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence            3689999999876 3   33  23579999998887763

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=86.95  E-value=1.1  Score=27.46  Aligned_cols=32  Identities=25%  Similarity=0.515  Sum_probs=23.0

Q ss_pred             hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l  166 (171)
                      .++|+.++|++++  +|+  ..+.|..+.+.+...|
T Consensus        57 ~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          57 EEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL   92 (93)
T ss_pred             HhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHh
Confidence            3689999999987  454  2356777777777655

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=86.85  E-value=1.3  Score=31.72  Aligned_cols=63  Identities=22%  Similarity=0.377  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCccc-EEEEC--Ce--eeeccCCCHHHHHHHHHHHh
Q 030793           99 KEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVP-HFVLN--GK--HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        99 ~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvP-tfvv~--~~--~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+...+++++.|++.. ..+.++.   ..+     ...+|+.|+| +|+|+  |+  +...|..+.+++.+.|+++.
T Consensus       104 ~~~~~~~~~~~~~~f~-~v~~D~~---~~~-----~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       104 SQNALKFLKELGNPYQ-AILIDPN---GKL-----GLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             hHHHHHHHHHcCCCCc-eEEECCC---Cch-----HHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence            3445567777777532 1122211   111     1358999999 67775  54  34568888999999888764

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=86.49  E-value=1.5  Score=29.09  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=28.3

Q ss_pred             hhCCCCcccEEEEC----Ce--eeeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVLN----GK--HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv~----~~--~~i~G~~~~~~~~~~l~~~~  170 (171)
                      ..+++.|+|++++=    |+  +.+.|..+.+.|...|+++.
T Consensus        70 ~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          70 QSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             HHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence            35889999999762    33  24579999999999998864

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=86.44  E-value=2.9  Score=24.49  Aligned_cols=57  Identities=26%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLR  164 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~  164 (171)
                      .+..+..+.|++-..-.++.    .....+++.. -.++.++|+++++|+ .+.|.. .+.+.+
T Consensus        15 ~~~~~l~~~~i~~~~~~i~~----~~~~~~~~~~-~~~~~~vP~i~~~~~-~i~g~~-~~~l~~   71 (73)
T cd02976          15 ATKRFLDERGIPFEEVDVDE----DPEALEELKK-LNGYRSVPVVVIGDE-HLSGFR-PDKLRA   71 (73)
T ss_pred             HHHHHHHHCCCCeEEEeCCC----CHHHHHHHHH-HcCCcccCEEEECCE-EEecCC-HHHHHh
Confidence            45556666777654111211    1223333332 248899999999986 677754 445544

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=85.92  E-value=1  Score=38.26  Aligned_cols=34  Identities=29%  Similarity=0.323  Sum_probs=29.3

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~  168 (171)
                      .++++.+||++++||+....|..+.++|.+.+.+
T Consensus       163 ~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~  196 (517)
T PRK15317        163 EARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDT  196 (517)
T ss_pred             HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence            4799999999999998767899999888888764

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=85.85  E-value=1  Score=29.42  Aligned_cols=30  Identities=27%  Similarity=0.346  Sum_probs=21.6

Q ss_pred             hhCCCCcccEEEE--CCe---eeeccCCCHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK---HELSGGQPPEVYLR  164 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~---~~i~G~~~~~~~~~  164 (171)
                      .++||.++||+++  +|+   ....|..+.+.+.+
T Consensus        72 ~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~  106 (108)
T cd02996          72 DRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAE  106 (108)
T ss_pred             HhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHh
Confidence            4689999999986  454   23468777777665

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PHA03050 glutaredoxin; Provisional

Probab=85.69  E-value=2.2  Score=28.35  Aligned_cols=58  Identities=10%  Similarity=0.077  Sum_probs=32.5

Q ss_pred             HHHHHHHHcCCch---hHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHH
Q 030793          101 FLVECARKVGVEG---AAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV  161 (171)
Q Consensus       101 ~L~~ia~~~Gld~---~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~  161 (171)
                      ...++..+.|++.   ..-.++.. ....++++.+.. ..|-..||+++|+|++ |.|..+...
T Consensus        28 ~ak~~L~~~~i~~~~~~~i~i~~~-~~~~~~~~~l~~-~tG~~tVP~IfI~g~~-iGG~ddl~~   88 (108)
T PHA03050         28 NALDILNKFSFKRGAYEIVDIKEF-KPENELRDYFEQ-ITGGRTVPRIFFGKTS-IGGYSDLLE   88 (108)
T ss_pred             HHHHHHHHcCCCcCCcEEEECCCC-CCCHHHHHHHHH-HcCCCCcCEEEECCEE-EeChHHHHH
Confidence            4566777778732   11111110 111344444443 3577899999999984 777655443

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=85.68  E-value=1.5  Score=28.51  Aligned_cols=32  Identities=28%  Similarity=0.512  Sum_probs=21.6

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~  167 (171)
                      .+++|.|+|||++  +|+.  .+.|+. .+.+.+.+.
T Consensus        65 ~~~~V~~~Pt~~~~~~G~~v~~~~G~~-~~~l~~~~~  100 (103)
T cd02985          65 RREKIIEVPHFLFYKDGEKIHEEEGIG-PDELIGDVL  100 (103)
T ss_pred             HHcCCCcCCEEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence            4689999999987  4652  356765 455555543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=85.54  E-value=2.9  Score=27.22  Aligned_cols=58  Identities=17%  Similarity=0.206  Sum_probs=32.4

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV  161 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~  161 (171)
                      ....+..+.|++-..-.++... ...+.++.+. ...|...+|.++|+|+ .|.|..+...
T Consensus        23 ~ak~~L~~~~i~~~~vdid~~~-~~~~~~~~l~-~~tg~~tvP~Vfi~g~-~iGG~ddl~~   80 (99)
T TIGR02189        23 VVKRLLLTLGVNPAVHEIDKEP-AGKDIENALS-RLGCSPAVPAVFVGGK-LVGGLENVMA   80 (99)
T ss_pred             HHHHHHHHcCCCCEEEEcCCCc-cHHHHHHHHH-HhcCCCCcCeEEECCE-EEcCHHHHHH
Confidence            3455667778875411122211 1122323332 2358899999999998 5777655433

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=85.41  E-value=1.1  Score=28.60  Aligned_cols=31  Identities=29%  Similarity=0.491  Sum_probs=21.8

Q ss_pred             hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRA  165 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~  165 (171)
                      .++||.++||+++  +|+  ..+.|..+.+.+.+.
T Consensus        69 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~  103 (104)
T cd02997          69 EEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF  103 (104)
T ss_pred             HhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhh
Confidence            3689999999977  344  245687777776543

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=85.13  E-value=1.2  Score=37.79  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=29.6

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~  169 (171)
                      .++++.+||++++||+....|..+.++|.+.+...
T Consensus       164 ~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~  198 (515)
T TIGR03140       164 EALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET  198 (515)
T ss_pred             HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence            47999999999999987678999999988777643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=84.94  E-value=2.6  Score=26.80  Aligned_cols=55  Identities=25%  Similarity=0.415  Sum_probs=33.6

Q ss_pred             HHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHH
Q 030793          100 EFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEV  161 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~  161 (171)
                      ..+.++..+.|++-. .....+     .++++.+.. ..|...+|.++++|++ |.|..+...
T Consensus        27 ~~ak~~L~~~~i~y~~idv~~~-----~~~~~~l~~-~~g~~tvP~vfi~g~~-iGG~~~l~~   82 (90)
T cd03028          27 RKVVQILNQLGVDFGTFDILED-----EEVRQGLKE-YSNWPTFPQLYVNGEL-VGGCDIVKE   82 (90)
T ss_pred             HHHHHHHHHcCCCeEEEEcCCC-----HHHHHHHHH-HhCCCCCCEEEECCEE-EeCHHHHHH
Confidence            356677788888755 222221     334443333 3577889999999984 766544433

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=84.73  E-value=2.3  Score=23.66  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=25.2

Q ss_pred             HHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH
Q 030793          102 LVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK  134 (171)
Q Consensus       102 L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~  134 (171)
                      |.+||+.+|++..  ..++++.....++.++.+.+
T Consensus         2 i~dIA~~agvS~~TVSr~ln~~~~vs~~tr~rI~~   36 (46)
T PF00356_consen    2 IKDIAREAGVSKSTVSRVLNGPPRVSEETRERILE   36 (46)
T ss_dssp             HHHHHHHHTSSHHHHHHHHTTCSSSTHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            7899999999987  56787755677777776543

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....

>PRK10329 glutaredoxin-like protein; Provisional

Probab=84.59  E-value=6.4  Score=24.54  Aligned_cols=59  Identities=17%  Similarity=0.173  Sum_probs=35.3

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~  167 (171)
                      ..+.+..+.|++-..-.++..    .+..+.+.  ..|..++|++++++. .+.|. ..+.+.+++-
T Consensus        16 ~ak~~L~~~gI~~~~idi~~~----~~~~~~~~--~~g~~~vPvv~i~~~-~~~Gf-~~~~l~~~~~   74 (81)
T PRK10329         16 ATKRAMESRGFDFEMINVDRV----PEAAETLR--AQGFRQLPVVIAGDL-SWSGF-RPDMINRLHP   74 (81)
T ss_pred             HHHHHHHHCCCceEEEECCCC----HHHHHHHH--HcCCCCcCEEEECCE-EEecC-CHHHHHHHHH
Confidence            355666778887652122221    22333332  358899999999886 57775 5666666543

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=84.57  E-value=1.7  Score=27.84  Aligned_cols=33  Identities=12%  Similarity=0.195  Sum_probs=24.6

Q ss_pred             hhCCCCcccEEEE--CCee-eeccCCCHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH-ELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~-~i~G~~~~~~~~~~l~  167 (171)
                      .+++|.++||+++  +|+. ...|..+.+.+.+.|+
T Consensus        65 ~~~~i~~~Pt~~~~~~g~~~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          65 GRFFVTALPTIYHAKDGVFRRYQGPRDKEDLISFIE  100 (101)
T ss_pred             HHcCCcccCEEEEeCCCCEEEecCCCCHHHHHHHHh
Confidence            3689999999987  3542 3468888888877765

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=83.35  E-value=3.7  Score=26.56  Aligned_cols=56  Identities=21%  Similarity=0.315  Sum_probs=34.4

Q ss_pred             HHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHH
Q 030793          100 EFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVY  162 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~  162 (171)
                      ....++..+.|++-. ....++     .++++.+.. ..|-..+|.++|+|+ .|.|..+...+
T Consensus        31 ~~ak~lL~~~~i~~~~~di~~~-----~~~~~~l~~-~tg~~tvP~vfi~g~-~iGG~ddl~~l   87 (97)
T TIGR00365        31 ARAVQILKACGVPFAYVNVLED-----PEIRQGIKE-YSNWPTIPQLYVKGE-FVGGCDIIMEM   87 (97)
T ss_pred             HHHHHHHHHcCCCEEEEECCCC-----HHHHHHHHH-HhCCCCCCEEEECCE-EEeChHHHHHH
Confidence            356777788888765 222222     334444333 356789999999998 47676554443

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=82.84  E-value=2.3  Score=28.81  Aligned_cols=31  Identities=23%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             hCCCCcccEEEE--CCee--eecc-CCCHHHHHHHH
Q 030793          136 SANISGVPHFVL--NGKH--ELSG-GQPPEVYLRAF  166 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G-~~~~~~~~~~l  166 (171)
                      ..+|.|+|||++  +|+.  .+.| ..+.++|...+
T Consensus        85 ~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        85 PTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             cccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence            468999999987  5653  2346 44577776654

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK10638 glutaredoxin 3; Provisional

Probab=82.10  E-value=4.3  Score=25.17  Aligned_cols=54  Identities=15%  Similarity=0.141  Sum_probs=31.8

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE  160 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~  160 (171)
                      ....+..+.|++-+..-++..    ....+++. ...|...+|+++++|+ .+.|..+..
T Consensus        17 ~a~~~L~~~gi~y~~~dv~~~----~~~~~~l~-~~~g~~~vP~i~~~g~-~igG~~~~~   70 (83)
T PRK10638         17 RAKALLNSKGVSFQEIPIDGD----AAKREEMI-KRSGRTTVPQIFIDAQ-HIGGCDDLY   70 (83)
T ss_pred             HHHHHHHHcCCCcEEEECCCC----HHHHHHHH-HHhCCCCcCEEEECCE-EEeCHHHHH
Confidence            455677778887652122221    22333333 2468889999999998 476654443

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=81.52  E-value=2.3  Score=27.52  Aligned_cols=32  Identities=13%  Similarity=0.276  Sum_probs=22.0

Q ss_pred             hhCCCCcccEEEE--CCe-------eeeccCCCHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK-------HELSGGQPPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~-------~~i~G~~~~~~~~~~l  166 (171)
                      .++||.|+||+++  +|+       +...|..+.+.+.+-|
T Consensus        68 ~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          68 GKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             HHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence            3689999999987  232       2346777777776544

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=80.44  E-value=0.99  Score=27.22  Aligned_cols=21  Identities=19%  Similarity=0.495  Sum_probs=16.4

Q ss_pred             hCCCCcccEEEECCeeeeccCC
Q 030793          136 SANISGVPHFVLNGKHELSGGQ  157 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~  157 (171)
                      ..|...+|.++++|++ +.|..
T Consensus        45 ~~g~~~vP~ifi~g~~-igg~~   65 (72)
T cd03029          45 VTGAMTVPQVFIDGEL-IGGSD   65 (72)
T ss_pred             HhCCCCcCeEEECCEE-EeCHH
Confidence            3688999999999984 66643

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=80.43  E-value=4.5  Score=28.53  Aligned_cols=57  Identities=14%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHh---hCCCCcccEEEECCeeeeccCCCHHH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKY---SANISGVPHFVLNGKHELSGGQPPEV  161 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~---~~gv~gvPtfvv~~~~~i~G~~~~~~  161 (171)
                      ....++.++.|++-+...++..    .+..+++...   ..+-..+|.++|+|+| |.|+.+...
T Consensus        20 ~~ak~iL~~~~V~~~e~DVs~~----~~~~~EL~~~~g~~~~~~tvPqVFI~G~~-IGG~del~~   79 (147)
T cd03031          20 NNVRAILESFRVKFDERDVSMD----SGFREELRELLGAELKAVSLPRVFVDGRY-LGGAEEVLR   79 (147)
T ss_pred             HHHHHHHHHCCCcEEEEECCCC----HHHHHHHHHHhCCCCCCCCCCEEEECCEE-EecHHHHHH
Confidence            4566777888887652223221    3344444431   1234789999999985 767654433

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=80.27  E-value=2.6  Score=36.41  Aligned_cols=37  Identities=14%  Similarity=0.326  Sum_probs=29.3

Q ss_pred             hhCCCCcccEEEE---CCee----eeccCCCHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVL---NGKH----ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~~~~----~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .++|+.|+||+++   +|+.    .+.|..+.+.|.+.++++.+
T Consensus       528 ~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~~  571 (571)
T PRK00293        528 KHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQP  571 (571)
T ss_pred             HHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhcC
Confidence            4689999999987   3442    35688899999999998753

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=80.13  E-value=5.6  Score=24.20  Aligned_cols=56  Identities=21%  Similarity=0.297  Sum_probs=30.3

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCC
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP  158 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~  158 (171)
                      ..+.++..+.|++-..-.++.. .....++..+. ...|..++|.++++|++ +.|...
T Consensus        14 ~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~~~~-~~~g~~~~P~v~~~g~~-igg~~~   69 (82)
T cd03419          14 KRAKSLLKELGVKPAVVELDQH-EDGSEIQDYLQ-ELTGQRTVPNVFIGGKF-IGGCDD   69 (82)
T ss_pred             HHHHHHHHHcCCCcEEEEEeCC-CChHHHHHHHH-HHhCCCCCCeEEECCEE-EcCHHH
Confidence            3456677777775331111111 11122333332 24689999999999984 655443

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=80.12  E-value=2.3  Score=27.01  Aligned_cols=31  Identities=16%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRA  165 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~  165 (171)
                      .+++|.++||+++  +|+.  ...|..+.+.+.+.
T Consensus        67 ~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~  101 (102)
T cd03005          67 SEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEF  101 (102)
T ss_pred             hhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhh
Confidence            3689999999876  4542  35688887776553

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
3gl5_A	239	Crystal Structure Of Probable Dsba Oxidoreductase S		6e-09

>pdb|3GL5|A Chain A, Crystal Structure Of Probable Dsba Oxidoreductase Sco1869 From Streptomyces Coelicolor Length = 239

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 48  GLEYNMSGLT-GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYI-GDKEFLVEC 105
           GL Y       G+T D HRLL+LA ++G  +   L +  + G F   + +  D E LVE 
Sbjct: 87  GLAYRTRDRDHGSTFDLHRLLHLAKERG--RHEALLDAFYRGNFADERSVFNDDERLVEL 144
Query: 106 ARKVGV--EGAAEFLDDPNSGLNEVH-EELKKYSANISGVPHFVLNGKHELSGGQPPEVY 162
           A   G+  E     L DP +  +EV  +E +      +GVP FVL+  + +SG QP EV+
Sbjct: 145 AVGAGLDAEEVRAVLADPAAYADEVRADEREAAQLGATGVPFFVLDRAYGVSGAQPAEVF 204
Query: 163 LRAFQVA 169
            +A   A
Sbjct: 205 TQALTQA 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	2e-29
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	3e-23
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	8e-22
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	2e-10
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	4e-07
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	5e-07
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	3e-06
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	5e-06
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	8e-05
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	2e-04

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} Length = 239

 Score =  107 bits (267), Expect = 2e-29
 Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 11/177 (6%)

Query: 3   LRWHPFFLNPSAPKEGV-NKKDFYENKFGS---QNQGIIARMTEVFRGLGLEYNMSGLTG 58
           +    F L+P   K+ V         K+G    Q Q     +       GL Y       
Sbjct: 38  VVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDNLGAQAAAEGLAYRTRDRDH 97

Query: 59  -NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYI-GDKEFLVECARKVGVEGAA- 115
            +T D HRLL+LA ++   +   L +  + G F   + +  D E LVE A   G++    
Sbjct: 98  GSTFDLHRLLHLAKER--GRHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEV 155

Query: 116 -EFLDDPNSGLNEVHEELKKYSA-NISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA 170
              L DP +  +EV  + ++ +    +GVP FVL+  + +SG QP EV+ +A   A 
Sbjct: 156 RAVLADPAAYADEVRADEREAAQLGATGVPFFVLDRAYGVSGAQPAEVFTQALTQAW 212

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Length = 216

 Score = 90.4 bits (224), Expect = 3e-23
 Identities = 23/177 (12%), Positives = 50/177 (28%), Gaps = 23/177 (12%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTG---- 58
           ++  P  L P      + +K             I+     V    G  +           
Sbjct: 41  VKIMPGGLRPGTNTPLLPEKRAQ----------ILHHWHSVHITTGQPFTFENALPEGFI 90

Query: 59  -NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEF 117
            +T  + R +        +K       +   ++   + +     L + A  +G+   + F
Sbjct: 91  YDTEPACRGVVSVSLIEPEKVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIP-ESRF 149

Query: 118 LDDPNSG--LNEVHEELKKYSA-NISGVPHFVLNGKHE----LSGGQPPEVYLRAFQ 167
                S           ++ +   ISG P  V+    +     +G +P E   +   
Sbjct: 150 TPVFQSDEAKQRTLAGFQRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLD 206

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus} Length = 208

 Score = 86.6 bits (214), Expect = 8e-22
 Identities = 23/177 (12%), Positives = 51/177 (28%), Gaps = 25/177 (14%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL-----T 57
             +    L P                     Q +     ++   LG ++N          
Sbjct: 36  FEYVVGGLAPDTN----------LPMPPEMQQKLEGIWKQIETQLGTKFNYDFWKLCTPV 85

Query: 58  GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAA-- 115
            +T  S R +  AG Q       + E +   Y+ +     ++   ++ A+++G+      
Sbjct: 86  RSTYQSCRAVIAAGFQD--SYEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFK 143

Query: 116 EFLDDPNSGLNEVHEELKKYSA-NISGVPHFVLNGKHEL----SGGQPPEVYLRAFQ 167
             +D          ++L    +  ++  P  VL                E  L+  +
Sbjct: 144 NDMDGTL-LEGVFQDQLSLAKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIR 199

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2} Length = 202

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 33/164 (20%)

Query: 3   LRWHPFFL-------NPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR---GLGLEYN 52
           + W P+ L                 K+D+                 +  R     GL + 
Sbjct: 36  VLWRPYMLGAAFSVTGARGLSSTPLKRDY--------------AQRDWARIARQRGLTFR 81

Query: 53  M-SGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGV 111
             +      L + R  Y    Q  D     A+ +F  YF+        E +     +VG+
Sbjct: 82  PPADHPHVALAATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGL 141

Query: 112 EGAAEFLDDPNSGLNEVHEELKK-----YSANISGVPHFVLNGK 150
           E     L         + E ++K      +  I G P F+++ +
Sbjct: 142 E-PEALLAGIADP--ALKETVRKIGEDAVARGIFGSPFFLVDDE 182

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A* Length = 203

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 19/162 (11%), Positives = 41/162 (25%), Gaps = 31/162 (19%)

Query: 3   LRWHPFFL-------NPSAPKEGVNK-KDFYENKFGSQNQGIIARMTEVFRGLGLEYNM- 53
           +R++   L           P     K K  Y           + R     +  G+     
Sbjct: 32  IRYNAIDLARVKIAIGNVGPSNRDLKVKLDYLKVD-------LQRWA---QLYGIPLVFP 81

Query: 54  SGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEG 113
           +      ++              +       +F   + +G     +      + K+G + 
Sbjct: 82  ANYNSRRMNIGFYYS----GAEAQAAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWD- 136

Query: 114 AAEFLDDPNSGLNEVHEELKK-----YSANISGVPHFVLNGK 150
            + F    +S      E   +         + GVP   L  +
Sbjct: 137 RSAFEHFLSSN--AATERYDEQTHAAIERKVFGVPTMFLGDE 176

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A* Length = 234

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 33/170 (19%)

Query: 3   LRWHPFFL-------NPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNM-- 53
           L+  P  +           P     K  +  N         +  +        +  +   
Sbjct: 37  LQLRPSLITGIMKDSGNKPPGLLPRKGLYMAND--------LKLLRHHL---QIPIHFPK 85

Query: 54  ----SGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKV 109
                 L   +L + R L     +  +     + EL++  +++ + I + + ++  A K 
Sbjct: 86  DFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKA 145

Query: 110 GV--EGAAEFLDDPNSGLNEVHEELKK-----YSANISGVPHFVLNGKHE 152
           G+  E A   L+   +   +V  +LK+           G+P  V +   +
Sbjct: 146 GMSAEQAQGLLEKIAT--PKVKNQLKETTEAACRYGAFGLPITVAHVDGQ 193

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A Length = 193

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 19/117 (16%), Positives = 31/117 (26%), Gaps = 7/117 (5%)

Query: 49  LEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARK 108
           L           L   RL         D +      +F     Q   + + E L +   +
Sbjct: 59  LRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGE 118

Query: 109 VGVEGAAEFLDDPNSGLNEVHEELKKYSA-----NISGVPHFVLNGKHELSGGQPPE 160
                  + L    S   E      K         I GVP  ++ GK+++       
Sbjct: 119 QTAFDGKKVLAAYES--PESQARADKMQELTETFQIDGVPTVIVGGKYKVEFADWES 173

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} Length = 195

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 63  SHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPN 122
             +L Y          H    ++F    T+ K + DK+ + E A   GV+  A+F    +
Sbjct: 74  LQQLYYTLQALERPDLH---PKVFTAIHTERKRLFDKKAMGEWAASQGVD-RAKFDSVFD 129

Query: 123 SGLNEVHEELKKYSA-----NISGVPHFVLNGKHELSGGQPPEVYLRAFQVA 169
           S    V  ++++ S      +I G P F + G++  S       Y  A +V 
Sbjct: 130 SF--SVQTQVQRASQLAEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVV 179

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} Length = 189

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 9/96 (9%), Positives = 27/96 (28%), Gaps = 8/96 (8%)

Query: 68  YLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNE 127
             A    + +   + +  F     + +     +         G+    E+     S    
Sbjct: 70  AWALAMVMKETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRG-EYDRSIKSP--A 126

Query: 128 VHEELKKY-----SANISGVPHFVLNGKHELSGGQP 158
           V++ +           + G P   + G++ ++    
Sbjct: 127 VNDMVALQERLFKEYGVRGTPSVYVRGRYHINNAAF 162

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A Length = 195

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 9/121 (7%)

Query: 49  LEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARK 108
           L           L   R+       GL  Q N    +F   + Q   + ++    + A  
Sbjct: 57  LRTEHVVWQPEMLGLARMAAAVNLSGLKYQAN--PAVFKAVYEQKIRLENRSVAGKWALS 114

Query: 109 VGVEGAAEFLDDPNSGLNEVHEELKKYSA-----NISGVPHFVLNGKHELSGGQPPEVYL 163
                  + +   +S   E      K         I   P  ++ GK+ +      +  +
Sbjct: 115 QKGFDGKKLMRAYDSP--EAAAAALKMQKLTEQYRIDSTPTVIVGGKYRVIFNNGFDGGV 172

Query: 164 R 164
            
Sbjct: 173 H 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	100.0
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	100.0
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	99.97
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	99.97
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	99.96
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	99.95
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	99.94
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	99.87
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	99.86
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	99.86
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	99.83
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	99.82
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	99.82
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	99.81
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	99.81
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	99.81
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	99.81
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	99.79
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	99.76
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	99.74
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.73
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	99.69
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	99.62
1z6m_A	175	Conserved hypothetical protein; structural genomic	99.36
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	99.04
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.41
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.08
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.03
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.87
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.29
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.2
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.82
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	96.47
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	96.36
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	96.19
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	96.16
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.04
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.0
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	95.91
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	95.86
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	95.8
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	95.59
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	95.49
2qsi_A	137	Putative hydrogenase expression/formation protein;	95.48
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	95.48
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	95.45
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	95.44
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	95.39
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	95.38
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	95.35
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	95.34
2l57_A	126	Uncharacterized protein; structural genomics, unkn	95.27
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	95.13
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	95.11
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	95.11
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	95.09
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	95.05
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	94.98
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	94.93
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	94.92
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	94.91
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	94.91
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	94.82
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	94.81
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	94.81
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	94.8
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	94.8
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	94.79
1mek_A	120	Protein disulfide isomerase; electron transport, r	94.77
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	94.77
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	94.74
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	94.74
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	94.73
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	94.67
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	94.55
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	94.48
2kuc_A	130	Putative disulphide-isomerase; structural genomics	94.45
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	94.43
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	94.39
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	94.22
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	94.17
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	94.16
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	94.11
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	94.11
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	94.01
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	94.0
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	93.99
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	93.92
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	93.91
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	93.89
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	93.89
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	93.86
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	93.83
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	93.77
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	93.67
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	93.62
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	93.57
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	93.53
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	93.5
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	93.34
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	93.15
3ktb_A	106	Arsenical resistance operon trans-acting represso;	93.07
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	92.96
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	92.9
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	92.62
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	92.53
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	92.41
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	92.39
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	91.49
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	92.26
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	92.22
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	92.17
1ttz_A	87	Conserved hypothetical protein; structural genomic	92.16
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	92.05
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	92.02
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	91.9
3kgk_A	110	Arsenical resistance operon trans-acting represso;	91.85
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	91.07
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	91.72
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	91.69
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	91.57
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	91.52
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	91.35
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	91.19
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	91.09
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	90.98
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	90.96
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	90.89
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	90.86
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	90.8
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	90.79
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	90.75
4evm_A	138	Thioredoxin family protein; structural genomics, n	90.73
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	90.55
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	90.21
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	90.11
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	90.08
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	89.86
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	89.84
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	89.63
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	89.23
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	89.22
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	89.16
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	89.09
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	89.04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	88.92
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	88.71
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	88.34
3raz_A	151	Thioredoxin-related protein; structural genomics,	88.21
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	87.95
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	87.83
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	87.63
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	87.41
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	87.4
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	87.39
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	86.88
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	86.86
1kte_A	105	Thioltransferase; redox-active center, electron tr	86.69
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	86.32
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	85.92
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	85.82
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	85.61
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	85.56
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	85.55
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	85.35
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	85.24
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	84.88
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	84.7
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	84.4
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	84.13
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	83.96
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	83.82
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	83.79
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	83.76
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	83.67
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	83.66
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	83.27
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	83.25
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	83.17
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	82.97
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	82.9
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	82.46
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	81.6
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	81.39
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	80.63
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	80.2

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=100.00  E-value=1.1e-35  Score=225.01  Aligned_cols=167  Identities=29%  Similarity=0.436  Sum_probs=151.8

Q ss_pred             CeEEEeecccCCCCCCCC-CCHHHHHHHhhC-C--hHHHHHHHHHHHHHhcCCccccCC-CCCCcHHHHHHHHHHHhcCc
Q 030793            1 MILRWHPFFLNPSAPKEG-VNKKDFYENKFG-S--QNQGIIARMTEVFRGLGLEYNMSG-LTGNTLDSHRLLYLAGQQGL   75 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g-~~~~~~~~~~~g-~--~~~~~~~~~~~~a~~~g~~~~~~~-~~~~s~~a~r~~~~a~~~g~   75 (171)
                      ++|+||||+|+|+++.+| .+..+++..+|| +  +..++..++.++++.+|++|++++ ++.||..|||++.+|+++| 
T Consensus        36 v~v~~~P~~L~p~~~~~g~~~~~~~~~~k~g~~~~~~~~~~~~~~r~a~~~Gl~f~~~~~~~~nt~~a~r~~~~A~~~g-  114 (239)
T 3gl5_A           36 VEVVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDNLGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERG-  114 (239)
T ss_dssp             EEEEEEECCSCTTCCTTCCEEHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCCCCCSSCEECCCHHHHHHHHHHHTTT-
T ss_pred             eEEEEEEeccccCCCCCCCCCHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCCccCCCCCCCChHHHHHHHHHHHhhC-
Confidence            479999999999999876 467788989998 3  889999999999999999999976 4789999999999999999 


Q ss_pred             chHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHcCCchh--HhhhcC-CCCChHHHHHHHHH-hhCCCCcccEEEECCe
Q 030793           76 DKQHNLAEELFLGYFTQGKYIGD-KEFLVECARKVGVEGA--AEFLDD-PNSGLNEVHEELKK-YSANISGVPHFVLNGK  150 (171)
Q Consensus        76 ~~~~~~~~~l~~a~~~~g~~i~~-~~~L~~ia~~~Gld~~--~~~~~~-~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~  150 (171)
                       +.++++++||+++|.+|++|++ .++|.++++++|||.+  .+++++ + ++.+.++++.+. .++||+|||||+|||+
T Consensus       115 -~~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~s~~-~~~~~v~~~~~~a~~~Gv~GvPtfvv~g~  192 (239)
T 3gl5_A          115 -RHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPA-AYADEVRADEREAAQLGATGVPFFVLDRA  192 (239)
T ss_dssp             -CHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHHHHHCTT-TTHHHHHHHHHHHHHTTCCSSSEEEETTT
T ss_pred             -cHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHcCcH-hHHHHHHHHHHHHHHCCCCeeCeEEECCc
Confidence             8999999999999999999999 9999999999999987  567777 5 578888887765 7899999999999999


Q ss_pred             eeeccCCCHHHHHHHHHHHh
Q 030793          151 HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       151 ~~i~G~~~~~~~~~~l~~~~  170 (171)
                      |.++|+++++.|.++|+++.
T Consensus       193 ~~v~Ga~~~e~~~~~i~~~~  212 (239)
T 3gl5_A          193 YGVSGAQPAEVFTQALTQAW  212 (239)
T ss_dssp             EEEESSCCHHHHHHHHHHHH
T ss_pred             EeecCCCCHHHHHHHHHHHH
Confidence            99999999999999999864

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=2.8e-33  Score=206.89  Aligned_cols=162  Identities=17%  Similarity=0.227  Sum_probs=133.3

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCC-CCCCcHHHHHHHHHHHhcCcchHH
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG-LTGNTLDSHRLLYLAGQQGLDKQH   79 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~-~~~~s~~a~r~~~~a~~~g~~~~~   79 (171)
                      ++|+||||+|+|.++.+|+........    +..++..++.++++.+|++|+++. ++.||..|||++.+|+++|+++..
T Consensus        34 ~~v~~~p~~L~~~~~~~g~~~~~~~~~----k~~~~~~~~~r~a~~~G~~f~~~~~~~~~t~~a~r~~~~a~~~g~~~~~  109 (202)
T 3fz5_A           34 RTVLWRPYMLGAAFSVTGARGLSSTPL----KRDYAQRDWARIARQRGLTFRPPADHPHVALAATRAFYWIEAQSPDAAT  109 (202)
T ss_dssp             CCEEEEECTTC----------CCSHHH----HHHHHHHHHHHHHHHHTCCCCCCTTCCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred             CeEEEEeeeccchhhhcCCCCcccCcH----HHHHHHHHHHHHHHHhCCCCCCCCCCCCChHHHHHHHHHHHhhCchHHH
Confidence            579999999999999888643222221    678999999999999999999876 567999999999999999887899


Q ss_pred             HHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccC
Q 030793           80 NLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGG  156 (171)
Q Consensus        80 ~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~  156 (171)
                      +++++||+++|.+|+++++.++|.++++++|||.+  .+++++ .++.+.++++.+. .+.||+|||||+|||+ .++|.
T Consensus       110 ~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s-~~~~~~v~~~~~~a~~~Gv~GvPtfvv~g~-~~~G~  187 (202)
T 3fz5_A          110 AFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIAD-PALKETVRKIGEDAVARGIFGSPFFLVDDE-PFWGW  187 (202)
T ss_dssp             HHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCSSSEEEETTE-EEESG
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcC-HHHHHHHHHHHHHHHHCCCCcCCEEEECCE-EEecC
Confidence            99999999999999999999999999999999987  567777 4677778877665 7899999999999998 78999


Q ss_pred             CCHHHHHHHHHH
Q 030793          157 QPPEVYLRAFQV  168 (171)
Q Consensus       157 ~~~~~~~~~l~~  168 (171)
                      ++++.|.+.|..
T Consensus       188 ~~~~~l~~~l~~  199 (202)
T 3fz5_A          188 DRMEMMAEWIRT  199 (202)
T ss_dssp             GGHHHHHHHHHT
T ss_pred             CCHHHHHHHHhc
Confidence            999999998864

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=99.97  E-value=1.5e-30  Score=196.28  Aligned_cols=164  Identities=15%  Similarity=0.228  Sum_probs=131.9

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCC-CCC-----CcHHHHHHHHHHHhcC
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG-LTG-----NTLDSHRLLYLAGQQG   74 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~-~~~-----~s~~a~r~~~~a~~~g   74 (171)
                      ++|+||||+|+|.++.+|+.......    .+..|+..++.++++.+|++|+++. ++.     ||..|||++.+|+.++
T Consensus        35 v~v~~~p~~L~~~~~~~g~~~~~~~~----~k~~y~~~~~~r~a~~~G~~f~~~~~~~~~~~~~nt~~a~r~~~aa~~~~  110 (234)
T 3rpp_A           35 INLQLRPSLITGIMKDSGNKPPGLLP----RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEH  110 (234)
T ss_dssp             EEEEEEECCHHHHCC----CCCSSSC----HHHHHHHHHHHHHHHHHTCCCCCCSSCHHHHHHHCSHHHHHHHHHHHHHC
T ss_pred             CeEEEEEeecchhhhhcCCCCcccCh----HHHHHHHHHHHHHHHHhCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhC
Confidence            47999999999999887752211111    1678999999999999999999975 333     9999999999998775


Q ss_pred             cchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--Hhhh---cCCCCChHHHHHHHHH-hhCCCCcccEEEEC
Q 030793           75 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFL---DDPNSGLNEVHEELKK-YSANISGVPHFVLN  148 (171)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~---~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~  148 (171)
                      +++..+++++||+++|.+|+||+|.++|.++++++|||.+  .+++   ++ +++.++++++.+. .+.||+|||||||+
T Consensus       111 ~~~~~~~~~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~~~~~~l~~~~s-~~~~~~l~~~~~~a~~~Gv~GvPtfvv~  189 (234)
T 3rpp_A          111 PEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIAT-PKVKNQLKETTEAACRYGAFGLPITVAH  189 (234)
T ss_dssp             GGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred             cHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHccC-HHHHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence            5589999999999999999999999999999999999984  3344   44 3466667776654 68999999999995


Q ss_pred             --Ce-eeeccCCCHHHHHHHHHHH
Q 030793          149 --GK-HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       149 --~~-~~i~G~~~~~~~~~~l~~~  169 (171)
                        |+ +.++|.++.+.+.+.|.++
T Consensus       190 ~~g~~~~f~G~drl~~l~~~L~~~  213 (234)
T 3rpp_A          190 VDGQTHMLFGSDRMELLAHLLGEK  213 (234)
T ss_dssp             ETTEEEEEESSSCHHHHHHHHTCC
T ss_pred             CCCCcCceeCccCHHHHHHHhccc
Confidence              75 7899999999999988654

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=99.97  E-value=6.9e-31  Score=193.99  Aligned_cols=161  Identities=13%  Similarity=0.148  Sum_probs=138.2

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCC--hHHHHHHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHHhcCcchH
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQ   78 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~--~~~~~~~~~~~~a~~~g~~~~~~~~~~~s~~a~r~~~~a~~~g~~~~   78 (171)
                      ++|+||||.|+|.++.+|+.. +.+.   |.  +..++..++.++++.+|++|+++. +.||..|||++.+|+.+|  ++
T Consensus        30 ~~v~~~p~~L~~~~~~~g~~~-~~~~---g~~~~~~~~~~~~~~~a~~~G~~~~~~~-~~~t~~a~r~~~~a~~~g--~~  102 (203)
T 2imf_A           30 LTIRYNAIDLARVKIAIGNVG-PSNR---DLKVKLDYLKVDLQRWAQLYGIPLVFPA-NYNSRRMNIGFYYSGAEA--QA  102 (203)
T ss_dssp             CEEEEEECCHHHHHHHHTCCS-CCGG---GCHHHHHHHHHHHHHHHHHHTCCCCCCS-CCCCHHHHHHGGGCCSHH--HH
T ss_pred             CeEEEEeeecchhhHhhCCCC-cccc---cChHHHHHHHHHHHHHHHHcCCCCCCCC-CCChHHHHHHHHHHhCcC--hH
Confidence            579999999999877666432 2211   21  678999999999999999999988 899999999999998888  89


Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeecc
Q 030793           79 HNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSG  155 (171)
Q Consensus        79 ~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G  155 (171)
                      ++++++||+++|.+++++++.++|.++++++|+|.+  .+++++ .++.+.++++.+. .+.||+|||||+|||+ .++|
T Consensus       103 ~~~~~~lf~a~~~~~~~i~~~~~L~~~a~~~Gld~~~~~~~~~s-~~~~~~v~~~~~~a~~~Gv~G~Ptfvi~g~-~~~G  180 (203)
T 2imf_A          103 AAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSS-NAATERYDEQTHAAIERKVFGVPTMFLGDE-MWWG  180 (203)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCTTHHHHHHHHHTCCHHHHHHHHHS-HHHHHHHHHHHHHHHHTTCCSSSEEEETTE-EEES
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHhcC-HHHHHHHHHHHHHHHHCCCCcCCEEEECCE-EEEC
Confidence            999999999999999999999999999999999986  567777 3566777776664 7899999999999998 7899


Q ss_pred             CCCHHHHHHHHHHHh
Q 030793          156 GQPPEVYLRAFQVAA  170 (171)
Q Consensus       156 ~~~~~~~~~~l~~~~  170 (171)
                      +++++.|.+.|+++.
T Consensus       181 ~~~~~~l~~~l~~~~  195 (203)
T 2imf_A          181 NDRLFMLESAMGRLC  195 (203)
T ss_dssp             GGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhccc
Confidence            999999999998764

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=99.96  E-value=6.8e-29  Score=186.18  Aligned_cols=163  Identities=14%  Similarity=0.176  Sum_probs=132.6

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCCC------CCCcHHHHHHHHHHHhcC
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL------TGNTLDSHRLLYLAGQQG   74 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~------~~~s~~a~r~~~~a~~~g   74 (171)
                      ++|+||||.|+|.++.+|. ..+++...   +..++..++.++++..|++|+++..      +.||..|||++.+|+.+|
T Consensus        35 ~~v~~~p~~L~~~~~~~g~-~~~~~~~~---~~~~~~~~~~r~a~~~G~~~~~~~~~~~~~~~~~s~~a~r~~~aa~~~g  110 (226)
T 1r4w_A           35 IKLKLRPALLAGIMKDSGN-QPPAMVPH---KGQYILKEIPLLKQLFQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQ  110 (226)
T ss_dssp             EEEEEEECCHHHHHHHTTC-CCTTSSHH---HHHHHHHHHHHHHHHHTCCCCCCSSTTTHHHHHCSHHHHHHHHHHHHHC
T ss_pred             CeEEEEeeecccchhccCC-CCcccChH---HHHHHHHHHHHHHHHhCCCCCCCCccccccCCCCCHHHHHHHHHHHhhC
Confidence            4799999999998877663 22222111   6788999999999999999998643      248999999999999888


Q ss_pred             cchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--Hh---hhcCCCCChHHHHHHHHH-hhCCCCcccEEEEC
Q 030793           75 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AE---FLDDPNSGLNEVHEELKK-YSANISGVPHFVLN  148 (171)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~---~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~  148 (171)
                      ++++++++++||+++|.+|+++++.++|.++++++|||.+  .+   ++++ .++.+.++++.+. .+.||+|||||+||
T Consensus       111 ~~~~~~~~~alf~a~~~~~~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~s-~~~~~~v~~~~~~a~~~gv~G~Ptfvv~  189 (226)
T 1r4w_A          111 PEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKIST-ELVKSKLRETTGAACKYGAFGLPTTVAH  189 (226)
T ss_dssp             GGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCchhHHHHHHHcCC-HHHHHHHHHHHHHHHHCCCCCCCEEEEe
Confidence            7678999999999999999999999999999999999753  23   3445 3456667776654 78999999999999


Q ss_pred             ----CeeeeccCCCHHHHHHHHHHH
Q 030793          149 ----GKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       149 ----~~~~i~G~~~~~~~~~~l~~~  169 (171)
                          |+ .++|+++++.|.+.|.++
T Consensus       190 ~~g~~~-~~~G~~~~~~l~~~l~~~  213 (226)
T 1r4w_A          190 VDGKTY-MLFGSDRMELLAYLLGEK  213 (226)
T ss_dssp             ETTEEE-EEESTTCHHHHHHHHTCC
T ss_pred             CCCCcC-ceeCCCcHHHHHHHhcCc
Confidence                65 789999999999988654

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=99.95  E-value=3e-27  Score=175.06  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=131.3

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccC-----CCCCCcHHHHHHHHHHHhcCc
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMS-----GLTGNTLDSHRLLYLAGQQGL   75 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~-----~~~~~s~~a~r~~~~a~~~g~   75 (171)
                      ++|+|+||.|.|..+. ..+  +       .+..++..++.|+++..|++|+++     ..+.||..|||++.+|+.+| 
T Consensus        34 v~v~~~p~~L~~~~~~-~~~--~-------~~~~~~~~~~~r~a~~~G~~f~~~~~~~~~~~~~s~~a~r~~~aa~~~g-  102 (208)
T 3kzq_A           34 IQFEYVVGGLAPDTNL-PMP--P-------EMQQKLEGIWKQIETQLGTKFNYDFWKLCTPVRSTYQSCRAVIAAGFQD-  102 (208)
T ss_dssp             SEEEEEECCSSCSCCC-BCC--H-------HHHHHHHHHHHHHHHHHCCCCCTTHHHHSCCBCCCHHHHHHHHHHHTTT-
T ss_pred             ceEEEEecccccCCCC-CCC--H-------HHHHHHHHHHHHHHHHHCCcccHHHHhcCCCcCCcHHHHHHHHHHHHhC-
Confidence            5799999999886532 111  1       145778889999999999999987     35689999999999999999 


Q ss_pred             chHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEEC--Ce
Q 030793           76 DKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLN--GK  150 (171)
Q Consensus        76 ~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~--~~  150 (171)
                       ..++++++||+++|.+|+++++.++|.++++++|||.+  .+++++ .++.+.++++.+. .+.||+|||||+|+  |+
T Consensus       103 -~~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s-~~~~~~v~~~~~~a~~~gv~g~Pt~~v~~~~~  180 (208)
T 3kzq_A          103 -SYEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDG-TLLEGVFQDQLSLAKSLGVNSYPSLVLQINDA  180 (208)
T ss_dssp             -CHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTS-HHHHHHHHHHHHHHHHTTCCSSSEEEEEETTE
T ss_pred             -CHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhC-hHHHHHHHHHHHHHHHcCCCcccEEEEEECCE
Confidence             67999999999999999999999999999999999987  577877 3566777777665 78999999999996  45


Q ss_pred             e--eeccCCCHHHHHHHHHHHh
Q 030793          151 H--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       151 ~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      +  .+.|+++.+.|.++|+++.
T Consensus       181 ~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          181 YFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             EEEECCCSSCSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCHHHHHHHHHHHH
Confidence            5  3579999999999998764

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=99.94  E-value=1.1e-25  Score=167.13  Aligned_cols=159  Identities=13%  Similarity=0.185  Sum_probs=129.7

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccC-----CCCCCcHHHHHHHHHHHhcCc
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMS-----GLTGNTLDSHRLLYLAGQQGL   75 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~-----~~~~~s~~a~r~~~~a~~~g~   75 (171)
                      ++|+|+||.|.|..+. ..+  +       .+..++..++.++++.+|++|++.     .++.||..|+|++.+|+.+++
T Consensus        39 v~v~~~~~~l~~~~~~-~~~--~-------~~~~~~~~~~~r~a~~~g~~~~~~~~~~~~~~~~s~~a~r~~~~a~~~~~  108 (216)
T 2in3_A           39 LTVKIMPGGLRPGTNT-PLL--P-------EKRAQILHHWHSVHITTGQPFTFENALPEGFIYDTEPACRGVVSVSLIEP  108 (216)
T ss_dssp             CEEEEEECC----CCS-BCC--H-------HHHHHHHHHHHHHHHHHCCCCCCTTCSCTTCBCCCHHHHHHHHHHHHHCG
T ss_pred             eEEEEeecccccCCCC-CCC--H-------HHHHHHHHHHHHHHHHHCCccChHHHccCCcccCcHHHHHHHHHHHHhCc
Confidence            5799999999886632 111  1       145778889999999999999874     246899999999999998855


Q ss_pred             chHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEE--CCe
Q 030793           76 DKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVL--NGK  150 (171)
Q Consensus        76 ~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv--~~~  150 (171)
                      ++.++++++||+++|.++.++++.++|.++++++|+|.+  .+++++ ......++++.+. .++||+|||||+|  ||+
T Consensus       109 ~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~-~~~~~~v~~~~~~a~~~gv~g~Pt~~i~~~G~  187 (216)
T 2in3_A          109 EKVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQS-DEAKQRTLAGFQRVAQWGISGFPALVVESGTD  187 (216)
T ss_dssp             GGHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHHS-HHHHHHHHHHHHHHHHTTCCSSSEEEEEETTE
T ss_pred             chHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcc-hHHHHHHHHHHHHHHHcCCcccceEEEEECCE
Confidence            589999999999999999999999999999999999986  567777 3566677776654 7899999999998  999


Q ss_pred             e--eeccCCCHHHHHHHHHHHh
Q 030793          151 H--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       151 ~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      +  .+.|+++.+.|.+.|+++.
T Consensus       188 ~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          188 RYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             EEEEESSCCCHHHHHHHHHHHH
T ss_pred             EEEeccCCCCHHHHHHHHHHHH
Confidence            7  6899999999999998764

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=99.87  E-value=8e-23  Score=148.86  Aligned_cols=149  Identities=17%  Similarity=0.202  Sum_probs=117.5

Q ss_pred             CCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCC--CCCCcHHHHHHHHHHHhc-CcchHHHHHHHHHHHHhhcCC-
Q 030793           19 VNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG--LTGNTLDSHRLLYLAGQQ-GLDKQHNLAEELFLGYFTQGK-   94 (171)
Q Consensus        19 ~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~--~~~~s~~a~r~~~~a~~~-g~~~~~~~~~~l~~a~~~~g~-   94 (171)
                      ....+|+.+.|+ .|..+.+.+.++.+.+++.|...+  +..++..+.|++.+|..+ |....++++++||+++|.++. 
T Consensus        24 ~~vvef~d~~Cp-~C~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~~~  102 (185)
T 3feu_A           24 APVTEVFALSCG-HCRNMENFLPVISQEAGTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGEGT  102 (185)
T ss_dssp             CSEEEEECTTCH-HHHHHGGGHHHHHHHHTSCCEEEECCSSSHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             CEEEEEECCCCh-hHHHhhHHHHHHHHHhCCeEEEEeccCCccchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhccC
Confidence            356677777776 899998889999888766655433  345667788888888765 522368999999999999887 


Q ss_pred             -CCCCHHHHHHHHHHcCC-chh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeee--ccCCCHHHHHHHHH
Q 030793           95 -YIGDKEFLVECARKVGV-EGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHEL--SGGQPPEVYLRAFQ  167 (171)
Q Consensus        95 -~i~~~~~L~~ia~~~Gl-d~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i--~G~~~~~~~~~~l~  167 (171)
                       ++++.++|.+++.++|| |.+  .+.+.+  ...+.++++.+. .++||+|||||+|||+|.+  +|+++++.|.++|+
T Consensus       103 ~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~--~~~~~v~~~~~~a~~~gv~GtPtfvvng~~~v~~~Ga~~~e~~~~~i~  180 (185)
T 3feu_A          103 TLTEQQEAYSKAFTSRGLVSPYDFNEEQRD--TLIKKVDNAKMLSEKSGISSVPTFVVNGKYNVLIGGHDDPKQIADTIR  180 (185)
T ss_dssp             CHHHHHHHHHHHHHTTTCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCSSHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHcCCCccCEEEECCEEEEecCCCCCHHHHHHHHH
Confidence             68899999999999999 876  344443  244566666554 7899999999999999987  89999999999999


Q ss_pred             HHh
Q 030793          168 VAA  170 (171)
Q Consensus       168 ~~~  170 (171)
                      .+.
T Consensus       181 ~ll  183 (185)
T 3feu_A          181 YLL  183 (185)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=99.86  E-value=5.1e-22  Score=144.86  Aligned_cols=146  Identities=14%  Similarity=0.164  Sum_probs=121.1

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHhcCCccccC--C--CCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCC
Q 030793           21 KKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMS--G--LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYI   96 (171)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~--~--~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i   96 (171)
                      ...|....|+ .|..+.+.+.++.+.++..+.+.  +  +..++..+++++.+|+.+|  ++++++++||+++|.++.++
T Consensus        29 i~~f~d~~Cp-~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g--~~~~~~~~lf~~~~~~~~~~  105 (192)
T 3h93_A           29 VVELFWYGCP-HCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMG--VEHDVHNAVFEAIHKEHKKL  105 (192)
T ss_dssp             EEEEECTTCH-HHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHTSCCCC
T ss_pred             EEEEECCCCh-hHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCcCC
Confidence            3455555665 89999999999999987554443  2  3567788899999998888  89999999999999999999


Q ss_pred             CCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeec--cCCCHHHHHHHHHHHh
Q 030793           97 GDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELS--GGQPPEVYLRAFQVAA  170 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~--G~~~~~~~~~~l~~~~  170 (171)
                      ++.++|.++++++|||.+  .+++++ ......++++.+. .++||+|||||+|||++.+.  |+++++.|.++|+.+.
T Consensus       106 ~~~~~l~~~a~~~Gld~~~~~~~~~~-~~~~~~v~~~~~~a~~~gv~gtPt~~vng~~~~~~~G~~~~e~l~~~i~~l~  183 (192)
T 3h93_A          106 ATPEEMADFLAGKGVDKEKFLSTYNS-FAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLADYLI  183 (192)
T ss_dssp             CSHHHHHHHHHTTTCCHHHHHHHHTC-HHHHHHHHHHHHHHHHHTCCSSSEEEETTTEEEEHHHHTSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHhhC-HHHHHHHHHHHHHHHHhCCCCCCeEEECCEEEecccccCCHHHHHHHHHHHH
Confidence            999999999999999987  567877 3566677776664 68999999999999998766  9999999999988764

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=99.86  E-value=1.7e-21  Score=142.66  Aligned_cols=145  Identities=12%  Similarity=0.127  Sum_probs=119.0

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCC----CCCCcHHHHHHHHHHHhcCcchHHH--HHHHHHHHHhhcCC
Q 030793           21 KKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG----LTGNTLDSHRLLYLAGQQGLDKQHN--LAEELFLGYFTQGK   94 (171)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~----~~~~s~~a~r~~~~a~~~g~~~~~~--~~~~l~~a~~~~g~   94 (171)
                      ..+|+...|+ .|..+.+.+.++.+.++..+.+..    +..++..+.+++.+|..+|  ..++  ++++||+++|.++.
T Consensus        28 vv~f~d~~Cp-~C~~~~~~l~~~~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g--~~~~~~~~~~lf~a~~~~~~  104 (193)
T 3hz8_A           28 VLEFFGYFCP-HCAHLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAA--ADSKDVANSHIFDAMVNQKI  104 (193)
T ss_dssp             EEEEECTTCH-HHHHHHHHHHHHHTTCCTTEEEEEEECCCSGGGHHHHHHHHHHHHHT--GGGHHHHHHHHHHHHHTSCC
T ss_pred             EEEEECCCCh-hHHHHHHHHHHHHHHCCCCeEEEEecCCCCcccHHHHHHHHHHHHcC--chhHHhHHHHHHHHHHHhCc
Confidence            4456666675 899999999999998875544432    2455678999999998889  6677  99999999999999


Q ss_pred             CCCCHHHHHHHHHHc-CCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793           95 YIGDKEFLVECARKV-GVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        95 ~i~~~~~L~~ia~~~-Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      ++++.++|.+++.++ |||.+  .+++++ ......++++.+. .++||+|||||+|||++.+.|+ +++.|.++|+.+.
T Consensus       105 ~~~~~~~l~~~a~~~~Gld~~~~~~~~~s-~~~~~~v~~~~~~a~~~gv~gtPt~vvng~~~~~~~-~~e~l~~~i~~ll  182 (193)
T 3hz8_A          105 KLQNPEVLKKWLGEQTAFDGKKVLAAYES-PESQARADKMQELTETFQIDGVPTVIVGGKYKVEFA-DWESGMNTIDLLA  182 (193)
T ss_dssp             CTTSHHHHHHHHHHCTTTTHHHHHHHHHS-HHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECCS-SHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHccCCCHHHHHHHHcC-HHHHHHHHHHHHHHHHhCCCcCCEEEECCEEEecCC-CHHHHHHHHHHHH
Confidence            999999999999999 99987  577877 3566677776664 7899999999999999877776 9999999888754

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=99.83  E-value=1.3e-20  Score=138.92  Aligned_cols=147  Identities=12%  Similarity=0.081  Sum_probs=114.6

Q ss_pred             HHHHHHHhhCChHHHHHHHHHH-HHHhc----CCccccCCCC---CCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhc
Q 030793           21 KKDFYENKFGSQNQGIIARMTE-VFRGL----GLEYNMSGLT---GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQ   92 (171)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~~~~~-~a~~~----g~~~~~~~~~---~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~   92 (171)
                      ..+|..+.|+ .|..+.+.+.. +.+.+    .+.|.+..++   .+|..|.+++.++..++++++++++++||++++.+
T Consensus        33 vvef~D~~CP-~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~~~s~~Aa~aa~a~~~~~~~~f~~~~~aLf~~~~~~  111 (202)
T 3gha_A           33 VVEFGDYKCP-SCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDT  111 (202)
T ss_dssp             EEEEECTTCH-HHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHCCSS
T ss_pred             EEEEECCCCh-hHHHHHHHhhHHHHHHhccCCeEEEEEEecCccchhHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc
Confidence            3456666664 78888777643 33443    3556655433   34667777776665555559999999999999999


Q ss_pred             CCCCCCHHHHHHHHHH-cCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793           93 GKYIGDKEFLVECARK-VGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  168 (171)
Q Consensus        93 g~~i~~~~~L~~ia~~-~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~  168 (171)
                      +.++.+.+.|.+++++ +|||.+  .++++++ .+...++++.+. .++||+|||||+|||++ +.|+++++.|.++|++
T Consensus       112 ~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~-~~~~~v~~~~~~a~~~gV~gtPtfvvnG~~-~~G~~~~e~l~~~i~~  189 (202)
T 3gha_A          112 EQEWVTPGLLGDLAKSTTKIKPETLKENLDKE-TFASQVEKDSDLNQKMNIQATPTIYVNDKV-IKNFADYDEIKETIEK  189 (202)
T ss_dssp             SSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHT-TTHHHHHHHHHHHHHTTCCSSCEEEETTEE-CSCTTCHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhcCCCHHHHHHHHhCh-HHHHHHHHHHHHHHHcCCCcCCEEEECCEE-ecCCCCHHHHHHHHHH
Confidence            9999999999999999 999987  5778774 678888887765 78999999999999996 8899999999999998


Q ss_pred             Hh
Q 030793          169 AA  170 (171)
Q Consensus       169 ~~  170 (171)
                      +.
T Consensus       190 ~~  191 (202)
T 3gha_A          190 EL  191 (202)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=99.82  E-value=1.9e-19  Score=131.02  Aligned_cols=143  Identities=13%  Similarity=0.078  Sum_probs=117.1

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCCccccC--C--CCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCC---C
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGLEYNMS--G--LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK---Y   95 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~--~--~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~---~   95 (171)
                      .|....|+ .|..+.+.+.++.+.++..+.+.  +  +.+++..+++++.+|+.+|  +.++++++||+++|.++.   +
T Consensus        31 ~f~d~~Cp-~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~a~~a~~~a~~~~--~~~~~~~~lf~~~~~~~~~~~~  107 (193)
T 2rem_A           31 EIFGYTCP-HCAHFDSKLQAWGARQAKDVRFTLVPAVFGGVWDPFARAYLAADVLG--VAKRSHTAMFEAIHEKGSVPIQ  107 (193)
T ss_dssp             EEECTTCH-HHHHHHHHHHHHHHTSCTTEEEEEEECCCSTTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCCSCST
T ss_pred             EEECCCCh-hHhhhhHHHHHHHHhcCCceEEEEeCcccCCCcHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHhcccCcC
Confidence            44444554 78889999999988886544442  2  3567889999999999888  899999999999999998   9


Q ss_pred             CCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793           96 IGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        96 i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      +.+.++|.++++++|+|.+  .+++++ ......++++.+. .++||+|||||+|||++.+.|+ +++.|.++|+.+.
T Consensus       108 ~~~~~~l~~~a~~~Gld~~~~~~~~~~-~~~~~~v~~~~~~a~~~gv~gtPt~ving~~~~~g~-~~~~l~~~i~~~~  183 (193)
T 2rem_A          108 NVGPDELAVFYAGYGVQPDRFVATFNG-PEVEKRFQAARAYALKVRPVGTPTIVVNGRYMVTGH-DFEDTLRITDYLV  183 (193)
T ss_dssp             TCCHHHHHHHHHTTTCCHHHHHHHHTS-HHHHHHHHHHHHHHHHHCCSSSSEEEETTTEEECCS-SHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHhC-hHHHHHHHHHHHHHHHhCCCCCCeEEECCEEEecCC-CHHHHHHHHHHHH
Confidence            9999999999999999986  567777 3455667666554 6899999999999999877888 9999999988764

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=99.82  E-value=3.7e-20  Score=135.15  Aligned_cols=144  Identities=11%  Similarity=0.095  Sum_probs=117.3

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCCccccC--C--CCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCC
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGLEYNMS--G--LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGD   98 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~--~--~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~   98 (171)
                      .|....|+ .|..+.+.+.++.+.++..+.+.  +  +..+|..+++++.+|..+|  +.++++++||+++|.++.++++
T Consensus        28 ~f~d~~Cp-~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~s~~aa~a~~aa~~~~--~~~~~~~~lf~~~~~~~~~~~~  104 (195)
T 2znm_A           28 EFFGYFCV-HCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSG--LKYQANPAVFKAVYEQKIRLEN  104 (195)
T ss_dssp             EEECTTSC-CTTSSCHHHHHHHHHSCTTEEEEEEECCCSGGGHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCSSCTTS
T ss_pred             EEECCCCh-hHHHHhHHHHHHHHHCCCceEEEEeccccCcccHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHhCCCCCC
Confidence            45555665 67777788888888887555543  2  3467889999999998888  8999999999999999999999


Q ss_pred             HHHHHHHHHHc-CCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793           99 KEFLVECARKV-GVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        99 ~~~L~~ia~~~-Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++|.++++++ |+|.+  ..++++ ......++++... .++||+|||||+|||++.+.|+.+++.|.+.|+.+.
T Consensus       105 ~~~l~~~a~~~~Gld~~~~~~~~~~-~~~~~~v~~~~~~a~~~gv~gtPt~ving~~~~~g~~~~~~l~~~i~~~l  179 (195)
T 2znm_A          105 RSVAGKWALSQKGFDGKKLMRAYDS-PEAAAAALKMQKLTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELV  179 (195)
T ss_dssp             HHHHHHHHHTCSSSCHHHHHHHHTS-HHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHhcC-HHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEcCCCCHHHHHHHHHHHH
Confidence            99999999999 99986  567777 3455666666554 689999999999999987889888999888887653

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=99.81  E-value=1e-19  Score=132.71  Aligned_cols=146  Identities=10%  Similarity=0.068  Sum_probs=114.2

Q ss_pred             CHHHHHHHhhCChHHHHHHHH---HHHHHhcC--CccccCC--C-CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhh
Q 030793           20 NKKDFYENKFGSQNQGIIARM---TEVFRGLG--LEYNMSG--L-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFT   91 (171)
Q Consensus        20 ~~~~~~~~~~g~~~~~~~~~~---~~~a~~~g--~~~~~~~--~-~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~   91 (171)
                      ...+|+...|+ .|..+.+.+   .++.+.++  +.|.+..  + .+++..+++++.+|+.+|  ..+++++++|+++|.
T Consensus        17 ~vvef~d~~Cp-~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~aa~a~~aA~~~g--~~~~~~~~lf~a~~~   93 (189)
T 3l9v_A           17 AVVEFFSFYCP-PCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGPLGHELTRAWALAMVMK--ETDVIEKAFFTAGMV   93 (189)
T ss_dssp             SEEEEECTTCH-HHHHHHHTSCHHHHHHTTCCTTCCEEEEECSSSSTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCh-hHHHHhHhccchHHHHHhCCCCCEEEEEechhcccccHHHHHHHHHHHHcC--cHHHHHHHHHHHHhh
Confidence            45567777775 898888875   57877665  4444433  3 467888899888888888  789999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHc-CCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeecc--CCCH------
Q 030793           92 QGKYIGDKEFLVECARKV-GVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSG--GQPP------  159 (171)
Q Consensus        92 ~g~~i~~~~~L~~ia~~~-Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G--~~~~------  159 (171)
                      ++. +.+.++|.++++++ |||.+  .++++++ .....++++.+. .+.||+|||||+|||+|.++|  ..+.      
T Consensus        94 ~~~-~~~~~~l~~~a~~~~Gld~~~~~~~~~s~-~~~~~v~~~~~~a~~~gv~GtPt~~vng~~~v~~~~~~~~~~~~~~  171 (189)
T 3l9v_A           94 EKR-LHSPDDVRRVFMSATGISRGEYDRSIKSP-AVNDMVALQERLFKEYGVRGTPSVYVRGRYHINNAAFGAFSVENFR  171 (189)
T ss_dssp             TCC-CCSHHHHHHHHHHHHCCCHHHHHHHTTSH-HHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECGGGCCCSSHHHHH
T ss_pred             hcc-CCCHHHHHHHHHHccCCCHHHHHHHHhhH-HHHHHHHHHHHHHHHhCCCccCEEEECCEEEECccccccccccchH
Confidence            988 99999999999999 99987  5677773 566667776654 789999999999999998865  3443      


Q ss_pred             HHHHHHHHHHh
Q 030793          160 EVYLRAFQVAA  170 (171)
Q Consensus       160 ~~~~~~l~~~~  170 (171)
                      +.|.++|+.+.
T Consensus       172 ~~~~~~i~~Li  182 (189)
T 3l9v_A          172 SRYAAVVRKLL  182 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77888777654

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=99.81  E-value=1.9e-19  Score=130.61  Aligned_cols=145  Identities=13%  Similarity=0.158  Sum_probs=113.6

Q ss_pred             HHHHHhhCChHHHHHHHHH-HHHHhc----CCccccCCC---CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCC
Q 030793           23 DFYENKFGSQNQGIIARMT-EVFRGL----GLEYNMSGL---TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK   94 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~-~~a~~~----g~~~~~~~~---~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~   94 (171)
                      .|....|+ .|..+.+.+. .+.+.+    .+.+.+..+   .++|..+++++.++..+|++++++++++||++++.++.
T Consensus        17 ~f~D~~Cp-~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~~~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~~~~~~~   95 (186)
T 3bci_A           17 VYGDYKCP-YCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENK   95 (186)
T ss_dssp             EEECTTCH-HHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCSCTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCCTTS
T ss_pred             EEECCCCh-hHHHHHHHHHHHHHHHhccCCeEEEEEEecCcCCcchHHHHHHHHHHHHhCHHHHHHHHHHHHhcCcccCC
Confidence            34444453 7777777773 555554    366666443   36889999999999888887899999999999999899


Q ss_pred             CCCCHHHHHHHHHHcCCchhH-----hhh--cCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHH
Q 030793           95 YIGDKEFLVECARKVGVEGAA-----EFL--DDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAF  166 (171)
Q Consensus        95 ~i~~~~~L~~ia~~~Gld~~~-----~~~--~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l  166 (171)
                      ++.+.++|.++++++|+|.+.     +++  ++ ......++++.+. .++||+|||||+|||+ .+.|..+++.|.++|
T Consensus        96 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~-~~~~~~v~~~~~~a~~~gv~GtPt~vvnG~-~~~G~~~~~~l~~~i  173 (186)
T 3bci_A           96 EWLTKELLDKHIKQLHLDKETENKIIKDYKTKD-SKSWKAAEKDKKIAKDNHIKTTPTAFINGE-KVEDPYDYESYEKLL  173 (186)
T ss_dssp             CCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHTTCCSSSEEEETTE-ECSCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHcCCCCCCeEEECCE-EcCCCCCHHHHHHHH
Confidence            999999999999999999752     456  66 3566677776654 7899999999999998 588999999999999


Q ss_pred             HHHh
Q 030793          167 QVAA  170 (171)
Q Consensus       167 ~~~~  170 (171)
                      +++.
T Consensus       174 ~~~~  177 (186)
T 3bci_A          174 KDKI  177 (186)
T ss_dssp             HC--
T ss_pred             HHHH
Confidence            8654

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=99.81  E-value=1e-19  Score=132.89  Aligned_cols=145  Identities=18%  Similarity=0.190  Sum_probs=116.7

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHhcCCccccC--C--CCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCC
Q 030793           21 KKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMS--G--LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYI   96 (171)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~--~--~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i   96 (171)
                      ...|....|+ .|..+.+.+.++.+.++..+.+.  +  +..++..+.+++.++..+|   .++++++||+++|.++.++
T Consensus        29 vv~f~d~~Cp-~C~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~s~~aa~a~~aa~~~g---~~~~~~~lf~~~~~~~~~~  104 (195)
T 3hd5_A           29 VLEFFAYTCP-HCAAIEPMVEDWAKTAPQDVVLKQVPIAFNAGMKPLQQLYYTLQALE---RPDLHPKVFTAIHTERKRL  104 (195)
T ss_dssp             EEEEECTTCH-HHHHHHHHHHHHHHTCCTTEEEEEEECCSSGGGHHHHHHHHHHHHTT---CTTHHHHHHHHHHTSCCCC
T ss_pred             EEEEECCCCc-cHHHhhHHHHHHHHHCCCCeEEEEEecccCcchHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhccCC
Confidence            3345555665 78999999999999886444432  2  3467888899888888877   6899999999999999999


Q ss_pred             CCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCH---HHHHHHHHHHh
Q 030793           97 GDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPP---EVYLRAFQVAA  170 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~---~~~~~~l~~~~  170 (171)
                      .+.++|.++++++|+|.+  .+++++ ....+.++++.+. .++||+|||||+|||++.+.|+++.   +.|.++|+.+.
T Consensus       105 ~~~~~l~~~a~~~Gld~~~~~~~~~s-~~~~~~v~~~~~~a~~~gv~gtPt~ving~~~~~g~~~~~~~e~~~~~i~~L~  183 (195)
T 3hd5_A          105 FDKKAMGEWAASQGVDRAKFDSVFDS-FSVQTQVQRASQLAEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLI  183 (195)
T ss_dssp             CSHHHHHHHHHHTTCCHHHHHHHHTC-HHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECTTTTTGGGTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCHHHHHHHHcC-HHHHHHHHHHHHHHHHhCCCcCceEEECCEEEeCccccCChHHHHHHHHHHHH
Confidence            999999999999999987  567877 3566677776665 7899999999999999888887764   77888887654

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=99.81  E-value=1.1e-19  Score=132.96  Aligned_cols=145  Identities=14%  Similarity=0.136  Sum_probs=113.5

Q ss_pred             CHHHHHHHhhCChHHHHHHHH---HHHHHhcC--CccccCC--C-CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhh
Q 030793           20 NKKDFYENKFGSQNQGIIARM---TEVFRGLG--LEYNMSG--L-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFT   91 (171)
Q Consensus        20 ~~~~~~~~~~g~~~~~~~~~~---~~~a~~~g--~~~~~~~--~-~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~   91 (171)
                      ...+|....|+ .|..+.+.+   .++.+.++  +.+.+..  + .+.+..+.+++.+|+.+|  ..++++++||+++|.
T Consensus        24 ~vvef~d~~Cp-~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~~~~~s~~aa~a~~aA~~~g--~~~~~~~~lf~a~~~  100 (191)
T 3l9s_A           24 QVLEFFSFYCP-HCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALG--VEDKVTVPLFEAVQK  100 (191)
T ss_dssp             CEEEEECTTCH-HHHHHHHTSCHHHHHHHHSCTTCCEEEEECSSSSTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCh-hHHHhChhccchHHHHHhCCCCcEEEEEecccccccCHHHHHHHHHHHHcC--cHHHHHHHHHHHHHh
Confidence            45567777775 898888876   58888875  4555433  3 356788888888888888  788999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeec--cCCCH------H
Q 030793           92 QGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELS--GGQPP------E  160 (171)
Q Consensus        92 ~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~--G~~~~------~  160 (171)
                      ++. +++.++|.++++++|||.+  .++++++ .....++++.+. .++||+|||||+|||+|.+.  |..+.      +
T Consensus       101 ~~~-~~~~~~L~~~a~~~Gld~~~~~~~~~s~-~~~~~v~~~~~~a~~~gv~gtPtfvvnG~~~v~~~~~~~~~~~~~~~  178 (191)
T 3l9s_A          101 TQT-VQSAADIRKVFVDAGVKGEDYDAAWNSF-VVKSLVAQQEKAAADLQLQGVPAMFVNGKYQINPQGMDTSSMDVFVQ  178 (191)
T ss_dssp             SCC-CSSHHHHHHHHHHTTCCHHHHHHHHTSH-HHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECGGGSCCSSHHHHHH
T ss_pred             cCC-CCCHHHHHHHHHHcCCCHHHHHHHHhCH-HHHHHHHHHHHHHHHhCCcccCEEEECCEEEECccccCCccchhhHH
Confidence            887 9999999999999999987  5778773 566667776664 78999999999999998774  56664      4


Q ss_pred             HHHHHHHHH
Q 030793          161 VYLRAFQVA  169 (171)
Q Consensus       161 ~~~~~l~~~  169 (171)
                      .+.++|+.+
T Consensus       179 ~~~~~i~~L  187 (191)
T 3l9s_A          179 QYADTVKYL  187 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            677777654

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=99.79  E-value=4.9e-19  Score=127.59  Aligned_cols=146  Identities=12%  Similarity=0.099  Sum_probs=116.0

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHhcCCcccc--C--CCC--CCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCC
Q 030793           21 KKDFYENKFGSQNQGIIARMTEVFRGLGLEYNM--S--GLT--GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK   94 (171)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~--~--~~~--~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~   94 (171)
                      ..+|..+.|+ .|..+.+.+.++.+.++....+  .  ++.  ..+..+.++..++...+  ..+.++..+|.+++.++.
T Consensus        25 vvEf~dy~Cp-~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~--~~~~~~~~~~~~~~~~~~  101 (184)
T 4dvc_A           25 VSEFFSFYCP-HCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALE--VEDKMVPVMFNRIHTLRK  101 (184)
T ss_dssp             EEEEECTTCH-HHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTSCC
T ss_pred             EEEEECCCCH-hHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHhh
Confidence            4566666675 8999999999999887654332  2  232  33445556666666778  889999999999999999


Q ss_pred             CCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeec--cCCCHHHHHHHHHHH
Q 030793           95 YIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELS--GGQPPEVYLRAFQVA  169 (171)
Q Consensus        95 ~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~--G~~~~~~~~~~l~~~  169 (171)
                      +..+.+.|.+++++.|+|.+  .+++++ .++.+.|+++.+. .++||+|||||+|||+|.+.  |+.+++.|.++|+.+
T Consensus       102 ~~~~~~~l~~~a~~~Gld~~~~~~~~~s-~~~~~~v~~~~~~a~~~gv~gTPtfiINGky~v~~~~~~s~e~~~~~i~~L  180 (184)
T 4dvc_A          102 PPKDEQELRQIFLDEGIDAAKFDAAYNG-FAVDSMVHRFDKQFQDSGLTGVPAVVVNNRYLVQGQSAKSLDEYFDLVNYL  180 (184)
T ss_dssp             CCSSHHHHHHHHHTTTCCHHHHHHHHTS-HHHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCSSHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHhCCCHHHHHHHHhC-HHHHHHHHHHHHHHHHcCCCcCCEEEECCEEeeCCcCCCCHHHHHHHHHHH
Confidence            99999999999999999987  678888 3566777776664 78999999999999998774  578999999999876


Q ss_pred             h
Q 030793          170 A  170 (171)
Q Consensus       170 ~  170 (171)
                      .
T Consensus       181 l  181 (184)
T 4dvc_A          181 L  181 (184)
T ss_dssp             T
T ss_pred             H
Confidence            5

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=99.76  E-value=1.4e-18  Score=126.04  Aligned_cols=142  Identities=13%  Similarity=0.112  Sum_probs=108.3

Q ss_pred             HHHHHHhhCChHHHHHHHHHHHHHhc--C-CccccCC----CCCCcHHHHHHHHHHHhcCc--chHHHHHHHHHHHH--h
Q 030793           22 KDFYENKFGSQNQGIIARMTEVFRGL--G-LEYNMSG----LTGNTLDSHRLLYLAGQQGL--DKQHNLAEELFLGY--F   90 (171)
Q Consensus        22 ~~~~~~~~g~~~~~~~~~~~~~a~~~--g-~~~~~~~----~~~~s~~a~r~~~~a~~~g~--~~~~~~~~~l~~a~--~   90 (171)
                      .+|..+.|. .|..+.+.+..+.+.+  | +.+.+..    +.++|..++|++.+|..+++  +++++|+++||+..  |
T Consensus        19 v~f~D~~Cp-~C~~~~~~~~~~l~~~~~g~v~~v~r~~p~~~h~~s~~aaraa~aa~~~~~~~~~f~~~~~aLf~~q~~~   97 (182)
T 3gn3_A           19 EVFLEPTCP-FSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPWHMFSGVIVRCILAAATLEGGKESAKAVMTAVASHREEF   97 (182)
T ss_dssp             EEEECTTCH-HHHHHHTTHHHHHHHHCTTTEEEEEEECCCTTSTTHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTGGGG
T ss_pred             EEEECCCCH-hHHHHHHHHHHHHHHhCCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHhccChHHHHHHHHHHHhcCccc
Confidence            345555554 7777777766655543  2 4444432    35788899999998887743  68999999999985  3


Q ss_pred             h-------cCCCCCCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeee--eccCCCHH
Q 030793           91 T-------QGKYIGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHE--LSGGQPPE  160 (171)
Q Consensus        91 ~-------~g~~i~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~--i~G~~~~~  160 (171)
                      .       ..+++++.++|.++++.+|+|.+. ++++ .+..+.++.+.+. .++||+|||||+|||++.  ++|+++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~-~l~~-~~~~~~v~~~~~~a~~~GV~gtPtf~ing~~~~~~s~~~~~e  175 (182)
T 3gn3_A           98 EFEHHAGGPNLDATPNDIIARIERYSGLALAE-AFAN-PELEHAVKWHTKYARQNGIHVSPTFMINGLVQPGMSSGDPVS  175 (182)
T ss_dssp             SCBTTTBSGGGGCCHHHHHHHHHHHHTCCCHH-HHHC-GGGHHHHHHHHHHHHHHTCCSSSEEEETTEECTTCCTTSCHH
T ss_pred             ccccccccccCCCCHHHHHHHHHHHhCCCHHH-HhcC-hHHHHHHHHHHHHHHHCCCCccCEEEECCEEccCCCCCCCHH
Confidence            2       247888899999999999999873 4777 4677788877664 789999999999999964  68999999


Q ss_pred             HHHHHH
Q 030793          161 VYLRAF  166 (171)
Q Consensus       161 ~~~~~l  166 (171)
                      .|.+.|
T Consensus       176 ~w~~~l  181 (182)
T 3gn3_A          176 KWVSDI  181 (182)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999876

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=99.74  E-value=1e-18  Score=127.14  Aligned_cols=147  Identities=12%  Similarity=0.090  Sum_probs=108.3

Q ss_pred             HHHHHhhCChHHHHHHHH-HHHHHhcCCccccCC--C---CCCcHHHHHHHHHHHhc----Cc------chHHHHHHHHH
Q 030793           23 DFYENKFGSQNQGIIARM-TEVFRGLGLEYNMSG--L---TGNTLDSHRLLYLAGQQ----GL------DKQHNLAEELF   86 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~-~~~a~~~g~~~~~~~--~---~~~s~~a~r~~~~a~~~----g~------~~~~~~~~~l~   86 (171)
                      +++...|+ .|..+.+.+ .++.+.++..+++..  +   ...+..+.++...+...    +-      ...++++++||
T Consensus        23 ef~d~~CP-~C~~~~~~l~~~l~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  101 (195)
T 3c7m_A           23 KVFSYACP-FCYKYDKAVTGPVSEKVKDIVAFTPFHLETKGEYGKQASEVFAVLINKDKAAGISLFDANSQFKKAKFAYY  101 (195)
T ss_dssp             EEECTTCH-HHHHHHHHTHHHHHHHTTTTCEEEEEECTTSSTTHHHHHHHHHHHHHHHHHTTCCTTSTTCHHHHHHHHHH
T ss_pred             EEEeCcCc-chhhCcHHHHHHHHHhCCCceEEEEEecCccccccHHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHHHHH
Confidence            44444443 788888888 888888875555432  1   12344555544444322    21      13579999999


Q ss_pred             HHHhhcCCCCCCHHHHHHH----HHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeec--cCC
Q 030793           87 LGYFTQGKYIGDKEFLVEC----ARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELS--GGQ  157 (171)
Q Consensus        87 ~a~~~~g~~i~~~~~L~~i----a~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~--G~~  157 (171)
                      +++|.+++++++.++|.++    ++++|+|.+  .+++++ .++...++++.+. .+.||+|||||+|||++.+.  |++
T Consensus       102 ~a~~~~~~~~~~~~~l~~~~~~~a~~~Gld~~~~~~~~~~-~~~~~~v~~~~~~a~~~gv~gtPt~~ing~~~~~~~g~~  180 (195)
T 3c7m_A          102 AAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADFEAALKE-PAVQETLEKWKASYDVAKIQGVPAYVVNGKYLIYTKSIK  180 (195)
T ss_dssp             HHHHTSCCCTTTTTCHHHHHHHHHHHHTCCHHHHHHHHTS-HHHHHHHHHGGGHHHHHHHHCSSEEEETTTEEECGGGCC
T ss_pred             HHHHhcCCCCCCHHHHHHHHHhHHHHcCCCHHHHHHHHcC-hHHHHHHHHHHHHHHHcCCCccCEEEECCEEEeccCCCC
Confidence            9999999999999999999    999999987  567777 3455566665554 67999999999999997665  999


Q ss_pred             CHHHHHHHHHHHhC
Q 030793          158 PPEVYLRAFQVAAN  171 (171)
Q Consensus       158 ~~~~~~~~l~~~~~  171 (171)
                      +++.|.++|+.+.+
T Consensus       181 ~~~~l~~~i~~~l~  194 (195)
T 3c7m_A          181 SIDAMADLIRELAS  194 (195)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998753

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.73  E-value=1.5e-17  Score=119.24  Aligned_cols=138  Identities=15%  Similarity=0.148  Sum_probs=110.5

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCC-ccccCC---CCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCC
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGL-EYNMSG---LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGD   98 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~-~~~~~~---~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~   98 (171)
                      .|....|+ .|..+.+.+.++.+++|- .+.+..   ..++|..+++++.++..++  ++++++++||+    .+.++ +
T Consensus        28 ~f~d~~Cp-~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~--~~~~~~~~lf~----~~~~~-~   99 (175)
T 3gyk_A           28 EFFDYNCP-YCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQG--KYEAFHWALMG----MSGKA-N   99 (175)
T ss_dssp             EEECTTCH-HHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGT--CHHHHHHHHHT----CSSCC-S
T ss_pred             EEECCCCc-cHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHh--HHHHHHHHHHh----cCCCC-C
Confidence            44455554 899999999999887763 444433   2467889999999998887  89999999887    34555 7


Q ss_pred             HHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793           99 KEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        99 ~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+.|.++++++|+|.+  .+++++ ......++++.+. .++||+|||||+|||+ .+.|+.+++.|.+.|+++.
T Consensus       100 ~~~l~~~a~~~Gld~~~~~~~~~~-~~~~~~v~~~~~~a~~~gv~gtPt~~i~g~-~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          100 ETGVLRIAREVGLDTEQLQRDMEA-PEVTAHIAQSMALAQKLGFNGTPSFVVEDA-LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTC-HHHHHHHHHHHHHHHHHTCCSSSEEEETTE-EECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhC-hHHHHHHHHHHHHHHHcCCccCCEEEECCE-EeeCCCCHHHHHHHHHHHH
Confidence            8899999999999987  577877 3566667776654 7899999999999998 6899999999999998864

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=99.69  E-value=9.4e-18  Score=125.64  Aligned_cols=144  Identities=10%  Similarity=0.106  Sum_probs=105.4

Q ss_pred             HHHHHHhhCChHHHHHHHH-HHHHHhc----CCccccCCC--CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCC
Q 030793           22 KDFYENKFGSQNQGIIARM-TEVFRGL----GLEYNMSGL--TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK   94 (171)
Q Consensus        22 ~~~~~~~~g~~~~~~~~~~-~~~a~~~----g~~~~~~~~--~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~   94 (171)
                      .+|..+.|+ .|..+.+.+ ..+.+++    .+.+.+..+  .+.|..|++++.++..++  ++++++++||++....+.
T Consensus        44 vef~Dy~CP-~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~~~s~~Aa~aa~aa~~~~--~f~~~~~aLF~~q~~~~~  120 (226)
T 3f4s_A           44 IEYASLTCY-HCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQE--DYFNFNKAVFNSIDSWNY  120 (226)
T ss_dssp             EEEECTTCH-HHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCSHHHHHHHHHGGGCCSHH--HHHHHHHHHHHTGGGSCS
T ss_pred             EEEECCCCH-HHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCChhHHHHHHHHHHhhChH--HHHHHHHHHHHhCHhhcc
Confidence            355556664 788877654 4555544    355555443  345666666666655455  899999999999755433


Q ss_pred             -CCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hh-CCCCcccEEEE---CCeeeeccCCC--------
Q 030793           95 -YIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YS-ANISGVPHFVL---NGKHELSGGQP--------  158 (171)
Q Consensus        95 -~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~-~gv~gvPtfvv---~~~~~i~G~~~--------  158 (171)
                       ++++.++|.++|+++|+|.+  .+++++ ......++++.+. .+ +||+|||||+|   ||++ +.|+++        
T Consensus       121 ~~~~~~~~L~~iA~~~Gld~~~~~~~l~s-~~~~~~v~~~~~~a~~~~GV~GtPtfvv~~~nG~~-~~Ga~~~~~~G~~~  198 (226)
T 3f4s_A          121 YNLSDLTLLQRIAALSNLKQDAFNQCIND-KKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKS-YIEHNKVKHGGYKE  198 (226)
T ss_dssp             SSTTCCHHHHHHHHHTTCCHHHHHHHHTC-HHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCTTC-CCCGGGGEEESCCC
T ss_pred             cccCcHHHHHHHHHHcCCCHHHHHHHHhC-HHHHHHHHHHHHHHHHHcCCCcCCEEEEEcCCCEE-eeCCCCcccccccC
Confidence             36788999999999999987  578887 4567777777664 67 99999999999   9984 566666        


Q ss_pred             HHHHHHHHHHHh
Q 030793          159 PEVYLRAFQVAA  170 (171)
Q Consensus       159 ~~~~~~~l~~~~  170 (171)
                      ++.|.++|+++.
T Consensus       199 ~e~l~~~I~~~l  210 (226)
T 3f4s_A          199 LKYFTNVIDKLY  210 (226)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=99.62  E-value=1.9e-16  Score=116.87  Aligned_cols=145  Identities=10%  Similarity=0.087  Sum_probs=98.8

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHH-hc----CCccccCCCC--CCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcC
Q 030793           21 KKDFYENKFGSQNQGIIARMTEVFR-GL----GLEYNMSGLT--GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQG   93 (171)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~~~~~~a~-~~----g~~~~~~~~~--~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g   93 (171)
                      ..+|..+.|+ .|+.+.+.+...-+ .+    .+.+.+..++  +++..|..   ++...+++++++|+++||...-..+
T Consensus        19 ivef~D~~Cp-~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~pl~~~s~~aa~---aa~~~~~~~f~~~~~~Lf~~q~~~~   94 (205)
T 3gmf_A           19 LVEFVSYTCP-HCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRDPIDMTVAL---ITNCVPPSRFFTLHTAFMRSQAQWI   94 (205)
T ss_dssp             EEEEECTTCH-HHHHHHHHHHHHHHHHTTTTTSEEEEEEECCCSHHHHHHHH---HHHHSCHHHHHHHHHHHHHTHHHHC
T ss_pred             EEEEECCCCH-HHHHHHHHHHHHHHHHhccCCeEEEEEEeCCCCcchHHHHH---HHHhcCHhHHHHHHHHHHHcCHHHH
Confidence            3456666665 67777766654433 33    2445554443  34444433   3333345599999999998754211


Q ss_pred             ---CCCC--------------------CHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHH-H-hhCCCCcccEEE
Q 030793           94 ---KYIG--------------------DKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELK-K-YSANISGVPHFV  146 (171)
Q Consensus        94 ---~~i~--------------------~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~-~-~~~gv~gvPtfv  146 (171)
                         .+++                    +.++|.++++++|||.+  .+++++ ..+...++++.+ + .++||+|||||+
T Consensus        95 ~~~~~~~~~~~~~w~~~~~~~~l~~ia~~~~L~~~a~~~Gld~~~~~~~l~s-~~~~~~v~~~~~~a~~~~GV~GtPtfv  173 (205)
T 3gmf_A           95 GPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSN-EALAKKLAAETDEAINQYNVSGTPSFM  173 (205)
T ss_dssp             HHHHHCCHHHHHTTSSSCHHHHHHHHHHHTTHHHHHHTTTCCHHHHHHHHTC-HHHHHHHHHHHHHHHHHHCCCSSSEEE
T ss_pred             hcccccchhhhhccccchhHHHHHhccCHHHHHHHHHHcCCCHHHHHHHHcC-HHHHHHHHHHHHHHHHHcCCccCCEEE
Confidence               1122                    22457788888999987  578887 356677877665 3 679999999999


Q ss_pred             ECCeeeeccCCCHHHHHHHHHHHhC
Q 030793          147 LNGKHELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       147 v~~~~~i~G~~~~~~~~~~l~~~~~  171 (171)
                      |||+ .+.|+++++.|.++|+++.+
T Consensus       174 vng~-~~~G~~~~e~l~~~i~~~~~  197 (205)
T 3gmf_A          174 IDGI-LLAGTHDWASLRPQILARLN  197 (205)
T ss_dssp             ETTE-ECTTCCSHHHHHHHHHHHHT
T ss_pred             ECCE-EEeCCCCHHHHHHHHHHHhh
Confidence            9998 58999999999999998764

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=99.36  E-value=3.2e-12  Score=91.34  Aligned_cols=133  Identities=11%  Similarity=0.127  Sum_probs=87.4

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhc----CCccccCCCC--CCcHHHHHHHH-HHHhcCcchHHHHHHHHHHHHhhcCCC
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGL----GLEYNMSGLT--GNTLDSHRLLY-LAGQQGLDKQHNLAEELFLGYFTQGKY   95 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~----g~~~~~~~~~--~~s~~a~r~~~-~a~~~g~~~~~~~~~~l~~a~~~~g~~   95 (171)
                      .|....|+ .|..+.+.+.++.+++    .+.+.+..++  ..+..+..++. ++...+++++++++++||+++...+ +
T Consensus        33 ~f~D~~Cp-~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~-~  110 (175)
T 1z6m_A           33 EFINVRCP-YCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWG-N  110 (175)
T ss_dssp             EEECTTCH-HHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHHHT-T
T ss_pred             EEECCCCc-chHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcChhhc-c
Confidence            34445554 7888888887776665    3555554432  22333322221 1112334488999999999875544 3


Q ss_pred             CCCHHHHHHHH-HHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793           96 IGDKEFLVECA-RKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  167 (171)
Q Consensus        96 i~~~~~L~~ia-~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~  167 (171)
                      + +.+.|.+++ +++|+|.+    .    ....+++..+. .++||+|||||+|||+ .+.|+.+++.|.++|+
T Consensus       111 ~-~~~~l~~~a~~~~Gld~~----~----~~~~~~~~~~~a~~~gv~gtPt~vvng~-~~~G~~~~~~l~~~i~  174 (175)
T 1z6m_A          111 L-TLEEVATYAEKNLGLKEQ----K----DATLVSAVIAEANAAHIQFVPTIIIGEY-IFDESVTEEELRGYIE  174 (175)
T ss_dssp             S-CHHHHHHHHHHTSCCCCC----C----CHHHHHHHHHHHHHHTCCSSCEEEETTE-EECTTCCHHHHHHHHT
T ss_pred             C-CHHHHHHHHHHhcCCCcc----c----CHHHHHHHHHHHHHcCCCCcCeEEECCE-EccCCCCHHHHHHHhc
Confidence            4 677888886 46899864    1    12344444443 6899999999999998 5889999999998875

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=99.04  E-value=7.8e-10  Score=80.81  Aligned_cols=60  Identities=20%  Similarity=0.273  Sum_probs=49.2

Q ss_pred             CCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeec
Q 030793           94 KYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELS  154 (171)
Q Consensus        94 ~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~  154 (171)
                      ++|+|.++|.+++.++|||.+  .++++++ .....+++.... ..+||+|||+|+|||+|.+.
T Consensus         1 ~~i~d~~~L~~~a~~~Gld~~~~~~~l~s~-~~~~~v~~~~~~a~~~gi~gvP~fvingk~~~~   63 (197)
T 1un2_A            1 QTIRSASDIRDVFINAGIKGEEYDAAWNSF-VVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN   63 (197)
T ss_dssp             CCCSSHHHHHHHHHHHTCCHHHHHHHHTSH-HHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             CCCCCHHHHHHHHHHcCCCHHHHHHHHhCH-HHHHHHHHHHHHHHHcCCCcCCEEEEcceEecC
Confidence            479999999999999999987  5778773 455666665443 68999999999999998775

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.41  E-value=7.6e-08  Score=72.24  Aligned_cols=121  Identities=6%  Similarity=-0.096  Sum_probs=76.2

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCCccccCCC---CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCH
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL---TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDK   99 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~---~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~   99 (171)
                      .|.+..|+ .|+.+.+.+..+.+..++.+.+..+   .++|..+.+++.++...+  +++.+++.+|..   .       
T Consensus       103 ~F~D~~Cp-~C~~~~~~l~~~~~~g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~--~~~~~~~~~~~~---~-------  169 (241)
T 1v58_A          103 VFADPFCP-YCKQFWQQARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPA--KTWQQYEASGGK---L-------  169 (241)
T ss_dssp             EEECTTCH-HHHHHHHHHHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHH--HHHHHHHHTTTC---C-------
T ss_pred             EEECCCCh-hHHHHHHHHHHHHhCCcEEEEEEECCcCCCcHHHHHHHHHHccCHH--HHHHHHHHHhcc---C-------
Confidence            34455565 7899999998888765566654332   456777777666655444  777777766542   1       


Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEEC---Cee-eeccCCCHHHHHHHHHHH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLN---GKH-ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~---~~~-~i~G~~~~~~~~~~l~~~  169 (171)
                                |++...  ..+ ......+.++.+. .++||.|||||+++   |++ .+.|+.+.+.|.+.|++.
T Consensus       170 ----------~l~~~~--~~~-~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~~~~~G~~~~~~L~~~l~~~  231 (241)
T 1v58_A          170 ----------KLNVPA--NVS-TEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMGNK  231 (241)
T ss_dssp             ----------CCCCCS--SCC-HHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHTTC-
T ss_pred             ----------CCCccc--cCC-HHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHHHHH
Confidence                      233210  011 1122345554443 67999999999996   453 578999999999988754

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.08  E-value=7.1e-06  Score=60.15  Aligned_cols=114  Identities=17%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCCccccCCCC---CCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCH
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLT---GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDK   99 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~~---~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~   99 (171)
                      .|....|+ .|+.+.+.+.++.+. |+.+.+..++   .++..+.++..+....+  ....+++. |    . +.++   
T Consensus        92 ~F~d~~Cp-~C~~~~~~l~~~~~~-~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d--~~~a~~~~-~----~-~~~~---  158 (211)
T 1t3b_A           92 VFMDITCH-YCHLLHQQLKEYNDL-GITVRYLAFPRAGMNNQTAKQMEAIWTAKD--PVFALNEA-E----K-GNLP---  158 (211)
T ss_dssp             EEECTTCH-HHHHHHTTHHHHHHT-TEEEEEEECCSSTTCSHHHHHHHHHHHSSS--HHHHHHHH-H----T-TCCC---
T ss_pred             EEECCCCH-hHHHHHHHHHHHHhC-CcEEEEEECCccCCCchHHHHHHHHHhCcC--HHHHHHHH-H----c-CCCC---
Confidence            34445565 788888888887664 6666543221   22332222222111233  44444433 2    1 2221   


Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEE-CCeeeeccCCCHHHHHHHHHHHh
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv-~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                                  +.     ..   ....+.++.+. .++||.|||||++ ||+ .+.|+.+.+.|.+.|+++.
T Consensus       159 ------------~~-----~~---~~~~v~~~~~l~~~~gV~gTPt~vi~nG~-~~~G~~~~~~l~~~l~~~~  210 (211)
T 1t3b_A          159 ------------KE-----VK---TPNIVKKHYELGIQFGVRGTPSIVTSTGE-LIGGYLKPADLLRALEETA  210 (211)
T ss_dssp             ------------SS-----CC---CSSHHHHHHHHHHHHTCCSSCEEECTTSC-CCCSCCCHHHHHHHHHHCC
T ss_pred             ------------Ch-----HH---HHHHHHHHHHHHHHcCCCcCCEEEEeCCE-EecCCCCHHHHHHHHHhcc
Confidence                        10     11   12356665554 6899999999999 787 6889999999999998753

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.03  E-value=4.1e-06  Score=58.17  Aligned_cols=112  Identities=15%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCCccccC--C---CCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCC
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGLEYNMS--G---LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIG   97 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~--~---~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~   97 (171)
                      .|.+..|+ .|+.+.+.+.++   ..+.+.+.  +   +.++|..+.+++.++..++  +.+  .+ ++.    .|. + 
T Consensus        20 ~f~D~~Cp-~C~~~~~~l~~l---~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~--~a~--~~-~~~----~g~-~-   84 (147)
T 3gv1_A           20 VFSDPDCP-FCKRLEHEFEKM---TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRA--KAW--TD-WMR----KGK-F-   84 (147)
T ss_dssp             EEECTTCH-HHHHHHHHHTTC---CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHH--HHH--HH-HHH----HCC-C-
T ss_pred             EEECCCCh-hHHHHHHHHhhc---CceEEEEEEccccccChhHHHHHHHHHcCCCHH--HHH--HH-HHh----CCC-C-
Confidence            44455565 677777777654   22333332  2   3467777777666554333  332  22 332    221 1 


Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEE-CCeeeeccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv-~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                                    +..     + .+....++++.+. .++||+|||||++ ||+ .+.|+++.+.|.++|+++.
T Consensus        85 --------------~~~-----~-~~~~~~v~~~~~la~~~gI~gtPt~vi~nG~-~i~G~~~~~~l~~~i~~~~  138 (147)
T 3gv1_A           85 --------------PVG-----G-SICDNPVAETTSLGEQFGFNGTPTLVFPNGR-TQSGYSPMPQLEEIIRKNQ  138 (147)
T ss_dssp             --------------CTT-----C-CCCSCSHHHHHHHHHHTTCCSSCEEECTTSC-EEESCCCTTHHHHHHHHTS
T ss_pred             --------------CCc-----c-HHHHHHHHHHHHHHHHhCCCccCEEEEECCE-EeeCCCCHHHHHHHHHHHH
Confidence                          111     1 1122356666554 6899999999999 676 6899999999999998764

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.87  E-value=2e-05  Score=57.84  Aligned_cols=113  Identities=15%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCCccccCCC-----CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCC
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL-----TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIG   97 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~-----~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~   97 (171)
                      .|...+|+ .|+.+.+.+.++.+. ++.+.+..+     .+++....+++.++.  +  ....+++.++.    .+    
T Consensus        92 ~F~d~~Cp-~C~~~~~~l~~l~~~-~v~v~~~~~p~~~~~~~s~~~a~a~~~a~--d--~~~~~~~~~~~----~~----  157 (216)
T 1eej_A           92 VFTDITCG-YCHKLHEQMADYNAL-GITVRYLAFPRQGLDSDAEKEMKAIWCAK--D--KNKAFDDVMAG----KS----  157 (216)
T ss_dssp             EEECTTCH-HHHHHHTTHHHHHHT-TEEEEEEECCTTCSSSHHHHHHHHHHTSS--S--HHHHHHHHHTT----CC----
T ss_pred             EEECCCCH-HHHHHHHHHHHHHhC-CcEEEEEECCccCCCchHHHHHHHHHhcc--C--HHHHHHHHHhC----CC----
Confidence            34445565 788999989888764 666554322     223333333332221  2  44444443321    11    


Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                                   ++.. .       ....+.++.+. .++||.|||||++.+.+.+.|+.+.+.|.+.|+++.
T Consensus       158 -------------~~~~-~-------~~~~v~~~~~l~~~~gV~gtPt~v~~dG~~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          158 -------------VAPA-S-------CDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             -------------CCCC-C-------CSCCHHHHHHHHHHHTCCSSSEEECTTSCEEESCCCHHHHHHHHHHHH
T ss_pred             -------------CChh-H-------HHHHHHHHHHHHHHcCCCccCEEEEcCCeEecCCCCHHHHHHHHHHhh
Confidence                         2210 1       11234444433 579999999999944357899999999999988754

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.29  E-value=0.00025  Score=43.29  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++|+.|+||++++|+..+.|..+.+.|.+.|+++.
T Consensus        49 ~~~~v~~~Pt~~~~G~~~~~G~~~~~~l~~~l~~~l   84 (85)
T 1nho_A           49 IEYGLMAVPAIAINGVVRFVGAPSREELFEAINDEM   84 (85)
T ss_dssp             GGTCSSCSSEEEETTTEEEECSSCCHHHHHHHHHHC
T ss_pred             HhCCceeeCEEEECCEEEEccCCCHHHHHHHHHHHh
Confidence            479999999999988755789888999999998765

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.20  E-value=0.00033  Score=42.72  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=30.1

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~  169 (171)
                      .++|+.|+||++++|+..+.|..+.+.+.+.|+++
T Consensus        50 ~~~~v~~~Pt~~~~G~~~~~G~~~~~~l~~~l~~~   84 (85)
T 1fo5_A           50 MEYGIMAVPTIVINGDVEFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             TSTTTCCSSEEEETTEEECCSSSSSHHHHHHHHHH
T ss_pred             HHCCCcccCEEEECCEEeeecCCCHHHHHHHHHHh
Confidence            46899999999998886578988899999998875

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.82  E-value=0.00068  Score=40.59  Aligned_cols=32  Identities=16%  Similarity=0.388  Sum_probs=26.1

Q ss_pred             hhCCCCcccEEEECCeeeeccCC-CHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~-~~~~~~~~l  166 (171)
                      .++||.|+||++++|+....|.. +.+.+.+.|
T Consensus        44 ~~~~v~~~Pt~~~~G~~~~~G~~~~~~~l~~~l   76 (77)
T 1ilo_A           44 LEAGLTALPGLAVDGELKIMGRVASKEEIKKIL   76 (77)
T ss_dssp             HHHTCSSSSCEEETTEEEECSSCCCHHHHHHHC
T ss_pred             HHCCCCcCCEEEECCEEEEcCCCCCHHHHHHHh
Confidence            46899999999999986556887 888887754

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=96.47  E-value=0.0033  Score=40.63  Aligned_cols=31  Identities=26%  Similarity=0.443  Sum_probs=26.9

Q ss_pred             hCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793          136 SANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~  167 (171)
                      ++||.|+|||+++|+ .+.|..+.+.|.+.+.
T Consensus        61 ~~~V~~~PT~~i~G~-~~~G~~~~~~l~~~~~   91 (106)
T 3kp8_A           61 EAGITSYPTWIINGR-TYTGVRSLEALAVASG   91 (106)
T ss_dssp             HTTCCSSSEEEETTE-EEESCCCHHHHHHHHT
T ss_pred             HcCCeEeCEEEECCE-EecCCCCHHHHHHHhC
Confidence            699999999999988 5889999998887653

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=96.36  E-value=0.00085  Score=48.54  Aligned_cols=71  Identities=14%  Similarity=0.067  Sum_probs=54.3

Q ss_pred             CHHHHHHHhhCChHHHHHHHH---HHHHHhcCCccccC--CCC----CCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHh
Q 030793           20 NKKDFYENKFGSQNQGIIARM---TEVFRGLGLEYNMS--GLT----GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYF   90 (171)
Q Consensus        20 ~~~~~~~~~~g~~~~~~~~~~---~~~a~~~g~~~~~~--~~~----~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~   90 (171)
                      ...+|+.++|| +|+.+.+.+   .++++.++-.+.+.  ++.    +.+..+.+++.++..+|  +.++++++||++++
T Consensus       116 ~vveFf~~~C~-~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~~~~~~~~~a~a~~aa~~~g--~~~~~~~~lF~ai~  192 (197)
T 1un2_A          116 QVLEFFSFFCP-HCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG--VEDKVTVPLFEGVQ  192 (197)
T ss_dssp             SEEEEECTTCH-HHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSSSHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCh-hHHHhCcccccHHHHHHHCCCCCEEEEeccCcCCccchHHHHHHHHHHHHcC--CHHHhhHHHHHHHH
Confidence            45577777787 899999887   89998876443332  222    24788889988898899  89999999999987


Q ss_pred             hcC
Q 030793           91 TQG   93 (171)
Q Consensus        91 ~~g   93 (171)
                      .+.
T Consensus       193 ~~~  195 (197)
T 1un2_A          193 KTL  195 (197)
T ss_dssp             TTC
T ss_pred             HHc
Confidence            654

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=96.19  E-value=0.0078  Score=39.79  Aligned_cols=36  Identities=17%  Similarity=0.263  Sum_probs=29.2

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      ...+|.|+||||+  +|+.  .+.|+.+.+.|.+.|+++.
T Consensus        70 ~~~~V~g~PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l  109 (116)
T 3dml_A           70 LARPVTFTPTFVLMAGDVESGRLEGYPGEDFFWPMLARLI  109 (116)
T ss_dssp             CSSCCCSSSEEEEEETTEEEEEEECCCCHHHHHHHHHHHH
T ss_pred             HHCCCCCCCEEEEEECCEEEeeecCCCCHHHHHHHHHHHH
Confidence            3678999999998  5653  4689999999999888754

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=96.16  E-value=0.011  Score=40.44  Aligned_cols=36  Identities=14%  Similarity=0.113  Sum_probs=29.9

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  ||+.  .+.|+.+.+.+.+.|++..
T Consensus        85 ~~ygV~sIPTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           85 DRFGAFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             HHHTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCccCCEEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence            5899999999987  6764  4689999999999888654

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.04  E-value=0.0069  Score=38.28  Aligned_cols=36  Identities=19%  Similarity=0.422  Sum_probs=29.3

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      ++||.|+||+++  +|+.  .+.|..+.+.+.+.|+++.+
T Consensus        68 ~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  107 (107)
T 1dby_A           68 EYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             HHTCCSSCEEEEESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             HCCCCcCCEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            579999999988  6653  35799999999999988753

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.00  E-value=0.013  Score=37.07  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=29.7

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        68 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCEEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            3689999999998  7763  3578889999999998765

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=95.91  E-value=0.011  Score=43.90  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=31.1

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++||+....|..+.+.|.+.|.+..
T Consensus       190 ~~~~V~~vPt~~i~G~~~~~G~~~~~~l~~~l~~~~  225 (243)
T 2hls_A          190 DKYGVMSVPSIAINGYLVFVGVPYEEDFLDYVKSAA  225 (243)
T ss_dssp             HHTTCCSSSEEEETTEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCeeeCeEEECCEEEEeCCCCHHHHHHHHHHHh
Confidence            368999999999999876789999999999888754

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=95.86  E-value=0.012  Score=37.47  Aligned_cols=36  Identities=14%  Similarity=0.344  Sum_probs=29.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        71 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  110 (112)
T 1t00_A           71 AKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI  110 (112)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred             HhCCCCcccEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            3689999999988  6763  3579999999999988765

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=95.80  E-value=0.048  Score=34.33  Aligned_cols=66  Identities=9%  Similarity=-0.004  Sum_probs=42.0

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      ....++..+.|++-..-.++..    .+..+.+.....|..+||+++|++.-.+.| -+.+++.+.|.++.
T Consensus        18 ~~aK~~L~~~gi~y~~idi~~d----~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~-~~~~el~~~L~el~   83 (92)
T 2lqo_A           18 LRLKTALTANRIAYDEVDIEHN----RAAAEFVGSVNGGNRTVPTVKFADGSTLTN-PSADEVKAKLVKIA   83 (92)
T ss_dssp             HHHHHHHHHTTCCCEEEETTTC----HHHHHHHHHHSSSSSCSCEEEETTSCEEES-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCceEEEEcCCC----HHHHHHHHHHcCCCCEeCEEEEeCCEEEeC-CCHHHHHHHHHHhc
Confidence            3466777888987652223221    344444444456899999999965434555 46788888887753

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=95.59  E-value=0.018  Score=35.99  Aligned_cols=35  Identities=20%  Similarity=0.410  Sum_probs=28.6

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.+.+.|+++
T Consensus        66 ~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           66 TQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred             HhCCCCcccEEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence            3689999999998  6763  357889999999998875

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=95.49  E-value=0.027  Score=34.93  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=29.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++|+.++||+++  +|+.  .+.|..+.+.+.+.|+++.
T Consensus        63 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  102 (104)
T 2e0q_A           63 ARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNLL  102 (104)
T ss_dssp             HHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCEEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence            3689999999998  7764  3568889999999988764

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=95.48  E-value=0.017  Score=39.26  Aligned_cols=35  Identities=11%  Similarity=0.113  Sum_probs=28.8

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.++|||++  ||+.  .+.|+.+.+.+.+.|++.
T Consensus        83 ~~ygV~siPTlilFkdG~~v~~~vG~~~k~~l~~~l~~~  121 (137)
T 2qsi_A           83 ARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAM  121 (137)
T ss_dssp             HHHTCCSSSEEEEEECCEEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHcCCccCCEEEEEECCEEEEEEeCCCCHHHHHHHHHHH
Confidence            4799999999987  6764  467999999888888764

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=95.48  E-value=0.023  Score=37.55  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=29.9

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        88 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           88 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             GGGTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCCccCEEEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            3689999999998  7874  3578889999999998865

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=95.45  E-value=0.019  Score=36.50  Aligned_cols=35  Identities=23%  Similarity=0.410  Sum_probs=27.9

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      ++||.|+|||++  +|+.  .+.|. +.+.+.+.|++..+
T Consensus        73 ~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           73 AAGITAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             HHTCCBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             HcCCCcccEEEEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            579999999988  6763  35687 88999999987653

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=95.44  E-value=0.024  Score=35.63  Aligned_cols=37  Identities=14%  Similarity=0.223  Sum_probs=29.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.+
T Consensus        69 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  109 (109)
T 3tco_A           69 DKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYLK  109 (109)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             HhcCcccCCEEEEEcCCcEEEeeeccCCHHHHHHHHHHHhC
Confidence            3689999999876  6763  35788899999999988753

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=95.39  E-value=0.012  Score=36.96  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        65 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           65 SQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             HHcCCccccEEEEEeCCeEEEEEecCCCHHHHHHHHHHHh
Confidence            3689999999998  7763  3579899999988887654

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=95.38  E-value=0.029  Score=36.34  Aligned_cols=36  Identities=17%  Similarity=0.226  Sum_probs=29.6

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        79 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           79 IEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            3689999999998  7864  3578889999999998765

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=95.35  E-value=0.023  Score=35.63  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.+.+.|+++
T Consensus        68 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           68 NAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             HhcCCCccCEEEEEeCCEEEEEecCCCCHHHHHHHHHhc
Confidence            3689999999998  7863  256888999999988764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=95.34  E-value=0.031  Score=35.49  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=29.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.++||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        73 ~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  112 (115)
T 1thx_A           73 KKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL  112 (115)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCCceeEEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence            3689999999998  7763  3568889999999998764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=95.27  E-value=0.028  Score=36.70  Aligned_cols=36  Identities=17%  Similarity=0.165  Sum_probs=29.4

Q ss_pred             hhCCCCcccEEEE---CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++   +|+.  .+.|..+.+.|.+.|++..
T Consensus        76 ~~~~v~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~  116 (126)
T 2l57_A           76 YKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLG  116 (126)
T ss_dssp             HHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHC
T ss_pred             HHcCCcceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHh
Confidence            3689999999988   6763  3579899999999998764

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=95.13  E-value=0.038  Score=34.90  Aligned_cols=36  Identities=14%  Similarity=0.303  Sum_probs=29.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        70 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           70 QRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             HHTTCCSSCEEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HhcCCCcCCEEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence            3689999999988  7764  3579889999999988764

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=95.11  E-value=0.033  Score=35.72  Aligned_cols=33  Identities=27%  Similarity=0.489  Sum_probs=25.6

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~  168 (171)
                      .++||.|+|||++  +|+.  .+.|+ +.+.|.+.|++
T Consensus        67 ~~~~V~~~PT~~~~~~G~~v~~~~G~-~~~~l~~~i~k  103 (105)
T 3zzx_A           67 QDNQIACMPTFLFMKNGQKLDSLSGA-NYDKLLELVEK  103 (105)
T ss_dssp             HHTTCCBSSEEEEEETTEEEEEEESC-CHHHHHHHHHH
T ss_pred             HHcCCCeecEEEEEECCEEEEEEeCc-CHHHHHHHHHh
Confidence            3699999999987  5652  35685 78889888876

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=95.11  E-value=0.022  Score=36.47  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|. +.+.|.+.|+++.
T Consensus        73 ~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           73 EKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             HHcCCCcccEEEEEECCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            3689999999998  6763  35688 8999999988764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=95.09  E-value=0.017  Score=38.04  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=29.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|++..
T Consensus        83 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           83 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             GGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            4789999999998  7764  3679999999999887653

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=95.05  E-value=0.024  Score=36.26  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=28.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|++.
T Consensus        66 ~~~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~~~~~  104 (110)
T 2l6c_A           66 KELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYASI  104 (110)
T ss_dssp             HHTTCCSSCEEEEEESSSEEEEEESCCCHHHHHHHHHTC
T ss_pred             HHcCCcccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHH
Confidence            3689999999998  7864  346989999999988753

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=94.98  E-value=0.056  Score=33.29  Aligned_cols=30  Identities=20%  Similarity=0.150  Sum_probs=24.3

Q ss_pred             hCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793          136 SANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~  167 (171)
                      ..|+.++|+++++|+ .+.|. +.+.+.+.|+
T Consensus        62 ~~g~~~vP~l~~~g~-~i~G~-~~~~l~~~l~   91 (92)
T 3ic4_A           62 ISGSYSVPVVVKGDK-HVLGY-NEEKLKELIR   91 (92)
T ss_dssp             HHSSSCSCEEEETTE-EEESC-CHHHHHHHHH
T ss_pred             hcCCCCcCEEEECCE-EEeCC-CHHHHHHHhc
Confidence            578899999999997 46675 7888888775

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=94.93  E-value=0.032  Score=36.24  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=27.6

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      ++||.|+|||++  +|+.  .+.|.. .+.+.+.|+++.+
T Consensus        86 ~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~~  124 (124)
T 1faa_A           86 ELGIRVVPTFKILKENSVVGEVTGAK-YDKLLEAIQAARS  124 (124)
T ss_dssp             HHCCSSSSEEEEEETTEEEEEEESSC-HHHHHHHHHHHTC
T ss_pred             HcCCCeeeEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence            589999999988  6764  246875 8899999988753

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=94.92  E-value=0.03  Score=35.03  Aligned_cols=35  Identities=17%  Similarity=0.376  Sum_probs=28.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.+.+.|+++
T Consensus        67 ~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           67 AKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             HHTTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             HhCCCcccCEEEEEeCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            3689999999987  6763  357988999999988764

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=94.91  E-value=0.032  Score=35.69  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=28.6

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|++.
T Consensus        65 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  103 (112)
T 2voc_A           65 GKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH  103 (112)
T ss_dssp             HHTTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             HHcCCCcccEEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence            3689999999998  7874  357999999999988754

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=94.91  E-value=0.041  Score=36.08  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=27.6

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|. +.+.+.+.|++..
T Consensus        85 ~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  123 (124)
T 1xfl_A           85 SDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL  123 (124)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             HHcCCCccCEEEEEECCEEEEEEeCC-CHHHHHHHHHHhc
Confidence            3689999999998  7763  34674 7889999988765

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=94.82  E-value=0.032  Score=34.98  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=28.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++|+.|+||+++  +|+.  ...|..+.+.|.+.|+++
T Consensus        66 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  104 (109)
T 2yzu_A           66 MRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEKH  104 (109)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHTT
T ss_pred             HhCCCCcCCEEEEEeCCcEeeeEeCCCCHHHHHHHHHHH
Confidence            3689999999998  7763  357888999999988764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=94.81  E-value=0.049  Score=35.14  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=28.0

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|.. .+.|.+.|++..
T Consensus        81 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l  119 (122)
T 2vlu_A           81 EQFSVEAMPTFLFMKEGDVKDRVVGAI-KEELTAKVGLHA  119 (122)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence            3689999999998  6763  357888 889999988764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=94.81  E-value=0.035  Score=36.09  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=28.1

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      ++||.|+|||++  +|+.  .+.|. +.+.|.+.|+++.+
T Consensus        83 ~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~  121 (121)
T 2j23_A           83 EVGIRAMPTFVFFKNGQKIDTVVGA-DPSKLQAAITQHSA  121 (121)
T ss_dssp             HHTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHTC
T ss_pred             HcCCCcccEEEEEECCeEEeeEcCC-CHHHHHHHHHHhhC
Confidence            578999999988  6763  35787 89999999988753

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=94.80  E-value=0.05  Score=36.21  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=29.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        98 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l  137 (140)
T 1v98_A           98 ARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYL  137 (140)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHCCCCccCEEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence            3689999999988  7763  3579889999999988764

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=94.80  E-value=0.093  Score=30.65  Aligned_cols=58  Identities=14%  Similarity=0.143  Sum_probs=34.6

Q ss_pred             HHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793          102 LVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       102 L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~  167 (171)
                      +..+.++.|++-..-.++..    ....+.+  ...|+.++|+++++|+ .+.|. +.+.+.+.|+
T Consensus        17 ~~~~l~~~~i~~~~~di~~~----~~~~~~~--~~~~~~~vP~l~~~g~-~~~g~-~~~~l~~~l~   74 (75)
T 1r7h_A           17 TKKALDRAGLAYNTVDISLD----DEARDYV--MALGYVQAPVVEVDGE-HWSGF-RPERIKQLQA   74 (75)
T ss_dssp             HHHHHHHTTCCCEEEETTTC----HHHHHHH--HHTTCBCCCEEEETTE-EEESC-CHHHHHHHHC
T ss_pred             HHHHHHHcCCCcEEEECCCC----HHHHHHH--HHcCCCccCEEEECCe-EEcCC-CHHHHHHHHh
Confidence            44555666776541112221    2233333  3589999999999987 46665 5677777664

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=94.79  E-value=0.027  Score=40.86  Aligned_cols=35  Identities=26%  Similarity=0.458  Sum_probs=29.2

Q ss_pred             hhCCCCcccEEEECCeee-eccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHE-LSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~-i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||++++|+.. +.|..+.+.|.+.|++.
T Consensus       183 ~~~~v~~~Pt~~~~G~~~~~~G~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          183 EQFQVVGVPKIVINKGVAEFVGAQPENAFLGYIMAV  218 (229)
T ss_dssp             HHTTCCSSSEEEEGGGTEEEESCCCHHHHHHHHHHH
T ss_pred             HHcCCcccCEEEECCEEEEeeCCCCHHHHHHHHHHH
Confidence            469999999999988743 67999999898888764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=94.77  E-value=0.021  Score=36.49  Aligned_cols=35  Identities=17%  Similarity=0.380  Sum_probs=27.9

Q ss_pred             hCCCCcccEEEE--CCe----eeeccCCCHHHHHHHHHHHh
Q 030793          136 SANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~----~~i~G~~~~~~~~~~l~~~~  170 (171)
                      ++||.|+||+++  +|+    ..+.|..+.+.|.+.|++..
T Consensus        76 ~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           76 QYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             HHTCCSSSEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred             HCCCCcccEEEEEeCCCcCCcccccCccCHHHHHHHHHhcc
Confidence            579999999988  675    34568888999999887653

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=94.77  E-value=0.051  Score=37.24  Aligned_cols=36  Identities=22%  Similarity=0.472  Sum_probs=29.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.++||+++  +|+.  .+.|..+.+.|.+.|++..
T Consensus       112 ~~~~i~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  151 (155)
T 2ppt_A          112 GRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKL  151 (155)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence            3689999999988  6763  3679999999999988764

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=94.74  E-value=0.046  Score=37.11  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=28.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|++..
T Consensus        85 ~~~~V~~iPT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l  124 (142)
T 2es7_A           85 DRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIV  124 (142)
T ss_dssp             HTTTCCSSSEEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             HhcCCCcCCeEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            4799999999987  5653  3579999999999888754

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=94.74  E-value=0.027  Score=35.53  Aligned_cols=35  Identities=26%  Similarity=0.167  Sum_probs=24.7

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      ++||.|+||+++  +|+.  .+.|..+.+.|.+.|++..
T Consensus        66 ~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           66 RYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             ----CCCCEEEEEETTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             hcCCCCCCEEEEEeCCeEEEEEeCCcCHHHHHHHHHHhh
Confidence            589999999987  6763  2479999999999988653

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=94.73  E-value=0.038  Score=35.09  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=27.0

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      ++||.|+|||++  +|+.  .+.|.. .+.+.+.|+++.+
T Consensus        73 ~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~~  111 (111)
T 2pu9_C           73 ELGIRVVPTFKILKENSVVGEVTGAK-YDKLLEAIQAARS  111 (111)
T ss_dssp             HHCCSBSSEEEEESSSSEEEEEESSC-HHHHHHHHHHHHC
T ss_pred             HcCCCeeeEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence            579999999988  5653  356874 8899999988753

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=94.67  E-value=0.037  Score=37.03  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=28.5

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      ++||.|+|||++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        73 ~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  111 (140)
T 3hz4_A           73 KYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDML  111 (140)
T ss_dssp             HHTCCEESEEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HCCCCcCCEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            589999999998  7764  3578889999998887653

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=94.55  E-value=0.058  Score=33.94  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=28.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.++||+++  +|+.  ...|..+.+.|.+.|++.
T Consensus        72 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           72 SKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             HhcCCCcccEEEEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            3689999999988  6763  457888999999988764

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=94.48  E-value=0.052  Score=35.02  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=27.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+|||++  +|+.  .+.|. +.+.|.+.|+++
T Consensus        78 ~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           78 SECEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             HHTTCCSSSEEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred             HHcCCccccEEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence            3689999999988  5653  35688 899999998875

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=94.45  E-value=0.064  Score=34.99  Aligned_cols=36  Identities=14%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             hhCCCCcccEEEE---CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++   +|+.  .+.|..+.+.|.+.|++..
T Consensus        80 ~~~~v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~  120 (130)
T 2kuc_A           80 KKYGVHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGV  120 (130)
T ss_dssp             HHTTCCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence            3689999999987   4553  3569889999999998764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=94.43  E-value=0.062  Score=34.19  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=26.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.  .+.|. +.+.+.+.|++.
T Consensus        71 ~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           71 QKNEVSAMPTLLLFKNGKEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             HHcCCCccCEEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence            3689999999988  6763  34687 668899988875

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=94.39  E-value=0.066  Score=33.35  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=27.2

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.  .+.|. +.+.+.+.|++.
T Consensus        67 ~~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           67 SESEVKSMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             HHTTCCBSSEEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             HHcCCCcCcEEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence            3689999999998  6763  35688 899999988875

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.22  E-value=0.079  Score=35.03  Aligned_cols=36  Identities=17%  Similarity=0.378  Sum_probs=28.9

Q ss_pred             hhCCCCcccEEEE--CCee-eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH-ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~-~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+. .+.|..+.+.|.+.|++..
T Consensus        85 ~~~~v~~~Pt~~~~~~G~~~~~~g~~~~~~l~~~l~~~~  123 (140)
T 2dj1_A           85 SKFDVSGYPTIKILKKGQAVDYDGSRTQEEIVAKVREVS  123 (140)
T ss_dssp             HHTTCCSSSEEEEEETTEEEECCSCCCHHHHHHHHHHHH
T ss_pred             HHCCCCccCeEEEEECCcEEEcCCCCCHHHHHHHHHHhc
Confidence            3689999999988  7762 2468889999999988764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=94.17  E-value=0.066  Score=33.35  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=26.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++|+.|+||+++  +|+.  ...| .+.+.+.+.|+++
T Consensus        68 ~~~~v~~~Pt~~~~~~G~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           68 MEYNISSMPTFVFLKNGVKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEES-CCHHHHHHHHHHT
T ss_pred             HHcCCCcccEEEEEcCCcEEEEEcC-CCHHHHHHHHHHh
Confidence            3689999999988  6763  3467 5788888888764

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=94.16  E-value=0.026  Score=36.35  Aligned_cols=35  Identities=17%  Similarity=0.434  Sum_probs=27.6

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+|||++  +|+.  .+.|..+.+.|.+.|+++
T Consensus        78 ~~~~i~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~  116 (121)
T 2i1u_A           78 RNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDV  116 (121)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHTCSC
T ss_pred             HhcCCCcCCEEEEEECCEEEEEecCCCCHHHHHHHHHHH
Confidence            3689999999998  6763  357888999888877653

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=94.11  E-value=0.062  Score=35.32  Aligned_cols=35  Identities=17%  Similarity=0.407  Sum_probs=27.2

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.| .+.+.|.+.|+++.
T Consensus        84 ~~~~v~~~Pt~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l  122 (125)
T 1r26_A           84 SKCRVLQLPTFIIARSGKMLGHVIG-ANPGMLRQKLRDII  122 (125)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence            3689999999998  7763  3467 57788999888764

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=94.11  E-value=0.063  Score=35.64  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=27.1

Q ss_pred             hhCCCCcccEEEE----CCe--e--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL----NGK--H--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv----~~~--~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++    +|+  .  .+.|. +.+.|.+.|+++.
T Consensus        86 ~~~~v~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l  128 (133)
T 3cxg_A           86 DQHNIKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYC  128 (133)
T ss_dssp             HHTTCCSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred             HhcCCCCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHH
Confidence            3689999999976    776  2  35677 7889999888753

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=94.01  E-value=0.12  Score=34.27  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=29.2

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|..+.+.+.+.++++.
T Consensus        86 ~~~~v~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~  125 (135)
T 3emx_A           86 NKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIY  125 (135)
T ss_dssp             HHHTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             HHcCCceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            5799999999988  4652  4579999999999888764

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=94.00  E-value=0.1  Score=33.17  Aligned_cols=35  Identities=14%  Similarity=0.321  Sum_probs=26.7

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++|+.|+|||++  +|+.  .+.| .+.+.+.+.|++..
T Consensus        75 ~~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~  113 (118)
T 2vm1_A           75 EAYNVEAMPTFLFIKDGEKVDSVVG-GRKDDIHTKIVALM  113 (118)
T ss_dssp             HHTTCCSBSEEEEEETTEEEEEEES-CCHHHHHHHHHHHH
T ss_pred             HHcCCCcCcEEEEEeCCeEEEEecC-CCHHHHHHHHHHHh
Confidence            3689999999988  7763  3467 47888888887754

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=93.99  E-value=0.086  Score=32.67  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=26.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++|+.++||+++  +|+.  ...| .+.+.|.+.|+++
T Consensus        66 ~~~~v~~~Pt~~~~~~g~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           66 AKYSVTAMPTFVFIKDGKEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             HHcCCccccEEEEEeCCcEEEEEeC-CCHHHHHHHHHhh
Confidence            3689999999998  6763  3467 4788899888875

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=93.92  E-value=0.048  Score=41.79  Aligned_cols=31  Identities=26%  Similarity=0.433  Sum_probs=27.3

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l  166 (171)
                      .+.||.|+||+++||+ .+.|.++.+++.+.+
T Consensus       245 ~~~gI~~vPT~~i~G~-~~~G~~~~~~L~~~l  275 (291)
T 3kp9_A          245 TEAGITSYPTWIINGR-TYTGVRSLEALAVAS  275 (291)
T ss_dssp             HTTTCCSTTEEEETTE-EEESCCCHHHHHHHT
T ss_pred             HHcCCcccCeEEECCE-EecCCCCHHHHHHHH
Confidence            4799999999999998 589999999888765

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=93.91  E-value=0.086  Score=34.22  Aligned_cols=63  Identities=16%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             CHHHHHHHHHHcCC-chhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCeee-eccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGV-EGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKHE-LSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gl-d~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~~~-i~G~~~~~~~~~~l~~~~  170 (171)
                      +.+.+.+++++.|+ +..  .+.+..   ..+.     ..+|+.|+|++++   +|+.. ..|..+.+.+.+.|+++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~--~~~d~~---~~~~-----~~~~i~~~P~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A           67 QVPAMQEFVNKYPVKTFT--QLADTD---GSVW-----ANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             CHHHHHHHHHHTTCTTSE--EEECTT---CHHH-----HHTTCCSSSEEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCCCceE--EEEcCC---cHHH-----HHcCCCCCceEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence            35667777777777 322  222211   1121     2589999999977   56642 578889999999998765

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=93.89  E-value=0.049  Score=41.31  Aligned_cols=106  Identities=10%  Similarity=0.123  Sum_probs=56.7

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCCccccCCC-CCCcHHHHHHHHHHHhcCcch----HHHHHHHHHHHHhhcCCCCC
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDK----QHNLAEELFLGYFTQGKYIG   97 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~-~~~s~~a~r~~~~a~~~g~~~----~~~~~~~l~~a~~~~g~~i~   97 (171)
                      .|.+.+|+ -|+.+.+.+..+.+...+.+-+.++ .++|....+.+.++....  +    -.+---++++.+|.....  
T Consensus       153 vFtDp~CP-YCkkl~~~l~~~l~~~~Vr~i~~Pilg~~S~~~a~~I~ca~d~~--ka~~~~~~~kia~L~~~~~~~~~--  227 (273)
T 3tdg_A          153 IVSDPMCP-HCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKA--RARGASVEDKISILEKIYSTQYD--  227 (273)
T ss_dssp             EEECTTCH-HHHHHHHTHHHHHHHCEEEEEECCCSSHHHHHHHHHHHHHHHHH--HHTTCCHHHHHHHHHHHHSTTCC--
T ss_pred             EEECcCCh-hHHHHHHHHHHHhhCCcEEEEEeeccCccHHHHHHHHhcCCCcc--ccccCChHHHHHHHHHHhcccCC--
Confidence            45566676 6888888888666654443333333 456777777666664322  1    112223455555542111  


Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCC-CCcccEEEECCe
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSAN-ISGVPHFVLNGK  150 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~g-v~gvPtfvv~~~  150 (171)
                                   ++.  . ..+ ...++.+++..+. .+.| |.||||++..+.
T Consensus       228 -------------~p~--~-~~~-~d~~~~v~~~~~~~~~~G~i~gtP~ii~~~~  265 (273)
T 3tdg_A          228 -------------INA--Q-KEP-EDLRTKVENTTKKIFESGVIKGVPFLYHYKA  265 (273)
T ss_dssp             -------------GGG--S-CCC-HHHHHHHHHHHHHHHSSSSSCSSSEEEEC--
T ss_pred             -------------CCC--C-CCc-hHHHHHHHHHHHHHHHcCCcccCcEEEecCc
Confidence                         111  0 111 1122355565555 6899 999999999653

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=93.89  E-value=0.098  Score=35.11  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=28.8

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|++..
T Consensus       103 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  142 (148)
T 3p2a_A          103 TRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQL  142 (148)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHCCCCccCEEEEEECCeEEEEEeCCCCHHHHHHHHHHHh
Confidence            3689999999987  6753  3578899999999888753

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=93.86  E-value=0.09  Score=33.66  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=26.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+|||++  +|+.  .+.| .+.+.+.+.|++.
T Consensus        79 ~~~~v~~~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           79 RKYNISAMPTFIAIKNGEKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             HHcCCCccceEEEEeCCcEEEEEeC-CCHHHHHHHHHHh
Confidence            3689999999998  6763  2467 4778888888765

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=93.83  E-value=0.075  Score=34.19  Aligned_cols=33  Identities=21%  Similarity=0.545  Sum_probs=25.7

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~  168 (171)
                      .++||.|+||+++  +|+.  .+.|.. .+.|.+.|++
T Consensus        77 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           77 KECEVTAMPTFVLGKDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             HHTTCCSBSEEEEEETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             HHCCCCcccEEEEEeCCeEEEEEeCCC-HHHHHHHHHh
Confidence            3689999999988  6764  257887 8888888764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=93.77  E-value=0.076  Score=37.00  Aligned_cols=36  Identities=6%  Similarity=0.079  Sum_probs=28.0

Q ss_pred             hhCCCCcccEEEE--CCee-----------eeccCCC-HHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH-----------ELSGGQP-PEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~-----------~i~G~~~-~~~~~~~l~~~~  170 (171)
                      .++||.++|||++  +|+.           ++.|+.+ .++|.+.|++..
T Consensus        89 ~~y~V~siPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A           89 TMYELYDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             TTTTCCSSEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            3799999999953  6765           4679887 888888887653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=93.67  E-value=0.076  Score=38.23  Aligned_cols=36  Identities=31%  Similarity=0.560  Sum_probs=29.1

Q ss_pred             hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+  ..+.|..+.+.|.+.|++..
T Consensus       186 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          186 DQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             HHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HhCCCcccCeEEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence            4689999999988  343  34679999999999998765

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=93.62  E-value=0.068  Score=35.00  Aligned_cols=34  Identities=9%  Similarity=0.105  Sum_probs=27.0

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~  168 (171)
                      .++||.|+||+++  +|+.  ...|..+.+.+.+.|++
T Consensus        90 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B           90 RKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHTT
T ss_pred             HHcCCCCcCEEEEEECCEEEEEecCCCCHHHHHHHHHh
Confidence            3689999999988  6763  34688899999888754

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=93.57  E-value=0.065  Score=33.93  Aligned_cols=34  Identities=15%  Similarity=0.151  Sum_probs=26.6

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~  169 (171)
                      .++| .++|+++++|+....|..+.+.+.+.|++.
T Consensus        61 ~~~g-~~vP~l~~~g~~~~~~g~~~~~l~~~l~~~   94 (100)
T 1wjk_A           61 ERYK-FDIPVFHLNGQFLMMHRVNTSKLEKQLRKL   94 (100)
T ss_dssp             HHSS-SSCSEEEESSSEEEESSCCHHHHHHHHHSS
T ss_pred             HHHC-CCCCEEEECCEEEEecCCCHHHHHHHHHHH
Confidence            3688 999999999985435667888898888754

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=93.53  E-value=0.1  Score=34.51  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=28.3

Q ss_pred             hhCCCCcccEEEE---CCee-eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL---NGKH-ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~~~~-~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++   +|+. ...|..+.+.|.+.|+++.
T Consensus        99 ~~~~v~~~Pt~~~~~~~g~~~~~~G~~~~~~l~~~l~~~l  138 (141)
T 3hxs_A           99 RDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDKVL  138 (141)
T ss_dssp             HHTTCCSSSEEEEECSSSCCEEEESCCCHHHHHHHHHHTT
T ss_pred             HHcCCCCcCEEEEEeCCCCEEEEeCCCCHHHHHHHHHHHH
Confidence            3689999999987   3442 3578889999999998764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=93.50  E-value=0.081  Score=35.00  Aligned_cols=35  Identities=17%  Similarity=0.381  Sum_probs=28.1

Q ss_pred             hhCCCCcccEEEE---CCee----eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL---NGKH----ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~~~~----~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++   +|+.    .+.|..+.+.|.+.|+++
T Consensus        85 ~~~~v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           85 KHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             HHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             HHcCCCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence            4699999999976   3553    357999999999998865

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=93.34  E-value=0.14  Score=32.28  Aligned_cols=35  Identities=34%  Similarity=0.584  Sum_probs=25.2

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|.. .+.|.+.|+++.
T Consensus        70 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~  108 (112)
T 3d6i_A           70 ELFEISAVPYFIIIHKGTILKELSGAD-PKEYVSLLEDCK  108 (112)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEECSCC-HHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEEECCEEEEEecCCC-HHHHHHHHHHHH
Confidence            3689999999988  6763  246764 456888877653

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=93.15  E-value=0.15  Score=34.66  Aligned_cols=36  Identities=22%  Similarity=0.464  Sum_probs=28.0

Q ss_pred             hhCCCCcccEEEE---CCee--eeccCC--CHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVL---NGKH--ELSGGQ--PPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~~~~--~i~G~~--~~~~~~~~l~~~~~  171 (171)
                      ..+||.|+||+++   +|+.  .+ |..  +.+.|.+.|+++.+
T Consensus       110 ~~~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          110 AQYKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             HHTTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            5799999999987   3542  34 888  88999999987653

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=93.07  E-value=0.39  Score=31.00  Aligned_cols=32  Identities=9%  Similarity=0.075  Sum_probs=26.6

Q ss_pred             hhCCCCcccEEEECCeeeeccCC-CHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~-~~~~~~~~l  166 (171)
                      .+.|+.++|.++|||+....|.. +.++|.+.+
T Consensus        69 ~~~G~~~LP~~~VDGevv~~G~yPt~eEl~~~l  101 (106)
T 3ktb_A           69 QKHGADALPITLVDGEIAVSQTYPTTKQMSEWT  101 (106)
T ss_dssp             HTTCGGGCSEEEETTEEEECSSCCCHHHHHHHH
T ss_pred             HHcCcccCCEEEECCEEEEeccCCCHHHHHHHh
Confidence            47999999999999998888865 577887654

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.96  E-value=0.11  Score=33.73  Aligned_cols=35  Identities=11%  Similarity=0.209  Sum_probs=27.8

Q ss_pred             hhCCCCcccEEEE--CCee-eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH-ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~-~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+. .+.|..+.+.|.+.|++.
T Consensus        71 ~~~~v~~~Pt~~~~~~G~~~~~~G~~~~~~l~~~l~~~  108 (126)
T 1x5e_A           71 GRFIINALPTIYHCKDGEFRRYQGPRTKKDFINFISDK  108 (126)
T ss_dssp             HHTTCCSSSEEEEEETTEEEECCSCCCHHHHHHHHHTC
T ss_pred             HHcCCcccCEEEEEeCCeEEEeecCCCHHHHHHHHHHH
Confidence            3689999999988  6763 346888999999988754

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=92.90  E-value=0.16  Score=33.57  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=26.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|. +.+.|.+.|+++.
T Consensus        93 ~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~  131 (139)
T 3d22_A           93 ASWEIKATPTFFFLRDGQQVDKLVGA-NKPELHKKITAIL  131 (139)
T ss_dssp             HHTTCCEESEEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEEcCCeEEEEEeCC-CHHHHHHHHHHHh
Confidence            3689999999987  5653  34677 7888988887653

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=92.62  E-value=0.056  Score=34.18  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=25.8

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      ++|+.|+||+++  +|+.  .+.| .+.+.|.+.|++..
T Consensus        74 ~~~v~~~Pt~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           74 EWNVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             HHHCSSTTEEEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             hCCCCcccEEEEEeCCEEEEEEec-CCHHHHHHHHHHhh
Confidence            578999999998  6763  3467 47788888888764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=92.53  E-value=0.2  Score=33.09  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=28.3

Q ss_pred             hhCCCCcccEEEE---CCee-eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL---NGKH-ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~~~~-~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++   +|+. ...|..+.+.|.+.|++..
T Consensus        86 ~~~~v~~~Pt~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~  125 (136)
T 2l5l_A           86 GAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDEFL  125 (136)
T ss_dssp             HHTTCCSSCEEEEECSSSCCEEEESCCCHHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence            3689999999986   4553 3478889999999998764

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=92.41  E-value=0.16  Score=34.40  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=27.6

Q ss_pred             hhCCCCcccEEEE--CCee-----------eecc-CCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH-----------ELSG-GQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~-----------~i~G-~~~~~~~~~~l~~~~  170 (171)
                      .+++|.|+||+++  +|+.           .+.| ..+.+.|.+.|+.+.
T Consensus        71 ~~~~v~~~Pt~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           71 QYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             HHcCCCccCeEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence            3689999999987  4653           3568 788899998888753

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=92.39  E-value=0.18  Score=33.18  Aligned_cols=63  Identities=14%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCee--eeccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      +.+.+.+++++.|++..  .+.+..   ..+.     ..+||.|+|++++   +|+.  ...|..+.+.+.+.|+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~--~~~d~~---~~~~-----~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  144 (148)
T 2b5x_A           77 DPGKIKETAAEHDITQP--IFVDSD---HALT-----DAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL  144 (148)
T ss_dssp             SHHHHHHHHHHTTCCSC--EEECSS---CHHH-----HHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCcc--eEECCc---hhHH-----HHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence            57778888888888643  222211   1121     3589999999987   4553  3458788889999888765

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=91.49  E-value=0.025  Score=37.08  Aligned_cols=36  Identities=25%  Similarity=0.569  Sum_probs=27.3

Q ss_pred             hhCCCCcccEEEE---C-Cee----eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL---N-GKH----ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~-~~~----~i~G~~~~~~~~~~l~~~~  170 (171)
                      ..+||.|+||+++   . |+.    .+.|..+.+.|.+.|+++.
T Consensus        72 ~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~  115 (130)
T 2lst_A           72 RRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVC  115 (130)
Confidence            4689999999987   3 553    2578888888888887653

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=92.26  E-value=0.088  Score=33.83  Aligned_cols=33  Identities=18%  Similarity=0.170  Sum_probs=25.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~  167 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+
T Consensus        81 ~~~~i~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           81 SRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             HHHTCCSSCEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             HHcCCCCCCeEEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            4689999999976  5653  3578889888887764

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=92.22  E-value=0.22  Score=31.48  Aligned_cols=53  Identities=17%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCC
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP  158 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~  158 (171)
                      ....+..+.|++-..-.++..    ....+.+.....|..++|+++++|+ .|.|..+
T Consensus        31 ~ak~~L~~~~i~y~~idI~~~----~~~~~~l~~~~~g~~~vP~ifi~g~-~igG~d~   83 (99)
T 3qmx_A           31 RALALLKRKGVEFQEYCIDGD----NEAREAMAARANGKRSLPQIFIDDQ-HIGGCDD   83 (99)
T ss_dssp             HHHHHHHHHTCCCEEEECTTC----HHHHHHHHHHTTTCCCSCEEEETTE-EEESHHH
T ss_pred             HHHHHHHHCCCCCEEEEcCCC----HHHHHHHHHHhCCCCCCCEEEECCE-EEeChHH
Confidence            345566667776542122221    2344444332238999999999998 4666443

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=92.17  E-value=0.23  Score=32.05  Aligned_cols=56  Identities=20%  Similarity=-0.003  Sum_probs=34.0

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEE--EECCeeeeccCCCHHHHHHHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHF--VLNGKHELSGGQPPEVYLRAF  166 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtf--vv~~~~~i~G~~~~~~~~~~l  166 (171)
                      .|.+++++.|++-..-.++. +   .++     ..++|+. +|++  +++|+....|..+.+.+.+.|
T Consensus        49 ~L~~l~~e~~i~~~~vDId~-d---~~l-----~~~ygv~-VP~l~~~~dG~~v~~g~~~~~~L~~~L  106 (107)
T 2fgx_A           49 SLRVLQKKSWFELEVINIDG-N---EHL-----TRLYNDR-VPVLFAVNEDKELCHYFLDSDVIGAYL  106 (107)
T ss_dssp             HHHHHHHHSCCCCEEEETTT-C---HHH-----HHHSTTS-CSEEEETTTTEEEECSSCCCHHHHHHH
T ss_pred             HHHHHHHhcCCeEEEEECCC-C---HHH-----HHHhCCC-CceEEEEECCEEEEecCCCHHHHHHHh
Confidence            45556666776644111221 1   222     1257887 9999  668885546888888887765

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=92.16  E-value=0.068  Score=33.15  Aligned_cols=32  Identities=16%  Similarity=0.091  Sum_probs=25.6

Q ss_pred             hCCCCcccEEE-ECCeeeeccCCCHHHHHHHHHHH
Q 030793          136 SANISGVPHFV-LNGKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       136 ~~gv~gvPtfv-v~~~~~i~G~~~~~~~~~~l~~~  169 (171)
                      ++|+. +|+++ ++|+. +.|..+.+.+.+.|++.
T Consensus        43 ~~g~~-vPtl~~~~G~~-v~g~~~~~~L~~~l~~~   75 (87)
T 1ttz_A           43 AYGLR-VPVLRDPMGRE-LDWPFDAPRLRAWLDAA   75 (87)
T ss_dssp             HHTTT-CSEEECTTCCE-EESCCCHHHHHHHHHTC
T ss_pred             HhCCC-cCeEEEECCEE-EeCCCCHHHHHHHHHHH
Confidence            46888 99999 78874 55888999999888753

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.05  E-value=0.19  Score=32.62  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=27.1

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      ++||.|+||+++  +|+.  .+.|..+.+.|.+.|.+..
T Consensus        78 ~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~  116 (133)
T 1x5d_A           78 RYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLF  116 (133)
T ss_dssp             HHTCCSSSEEEEEETTEEEEEECSCCSHHHHHHHHHHHH
T ss_pred             hCCCCeeCeEEEEeCCCceEEecCCCCHHHHHHHHHHHh
Confidence            578999999987  5652  3568888999988887653

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=92.02  E-value=0.24  Score=33.45  Aligned_cols=35  Identities=29%  Similarity=0.408  Sum_probs=26.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|. +.+.+.+.|++..
T Consensus        79 ~~~~v~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l  117 (153)
T 2wz9_A           79 EKYEISSVPTFLFFKNSQKIDRLDGA-HAPELTKKVQRHA  117 (153)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHS
T ss_pred             HHcCCCCCCEEEEEECCEEEEEEeCC-CHHHHHHHHHHHh
Confidence            3689999999988  7763  24575 6778888887754

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=91.90  E-value=0.2  Score=32.46  Aligned_cols=63  Identities=14%  Similarity=0.196  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCeee-ec---cCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKHE-LS---GGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~~~-i~---G~~~~~~~~~~l~~~~  170 (171)
                      +.+.+.+++++.|++..  .+.+..   ..+.     ..+|+.++|++++   +|+.. ..   |..+.+.+.+.|+++.
T Consensus        66 ~~~~~~~~~~~~~~~~~--~~~d~~---~~~~-----~~~~i~~~P~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           66 DVGAMQSFVSKYNLNFT--NLNDAD---GVIW-----ARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             CHHHHHHHHHHHTCCSE--EEECTT---SHHH-----HHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHcCCCce--EEECCc---hhHH-----HhcCCCCCCEEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence            36667777777777543  222211   1221     2589999999876   45532 56   8889999999998764

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=91.85  E-value=0.41  Score=31.08  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=26.5

Q ss_pred             hhCCCCcccEEEECCeeeeccCC-CHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~-~~~~~~~~l  166 (171)
                      .+.|+.++|.++|||+....|.. +.++|.+.+
T Consensus        66 ~~~G~~~LP~~~VDGevv~~G~yPt~eEl~~~l   98 (110)
T 3kgk_A           66 EASGAEGLPLLLLDGETVMAGRYPKRAELARWF   98 (110)
T ss_dssp             HHHCGGGCCEEEETTEEEEESSCCCHHHHHHHH
T ss_pred             HHcCcccCCEEEECCEEEEeccCCCHHHHHHHh
Confidence            46899999999999998888865 578887765

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=91.07  E-value=0.031  Score=34.77  Aligned_cols=35  Identities=29%  Similarity=0.472  Sum_probs=26.8

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++|+.++||+++  +|+.  ...|..+.+.+.+.|+++
T Consensus        67 ~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           67 AQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            4689999999988  6653  246877888888887764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=91.72  E-value=0.25  Score=35.71  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=29.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|+++.
T Consensus        78 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  117 (222)
T 3dxb_A           78 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  117 (222)
T ss_dssp             GGGTCCSBSEEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             HHcCCCcCCEEEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence            3689999999998  6763  3579999999999998764

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=91.69  E-value=0.94  Score=30.32  Aligned_cols=67  Identities=13%  Similarity=0.231  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEE-E--CCee--eeccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFV-L--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfv-v--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      +.+.+.+++++.|++..  .+.+.    ..+...+.. ...|+.++|+++ +  +|+.  ...|..+.+.+.+.|+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  150 (165)
T 3or5_A           78 QLPNVKNYMKTQGIIYP--VMMAT----PELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMAL  150 (165)
T ss_dssp             CHHHHHHHHHHHTCCSC--EEECC----HHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCc--eEecC----HHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            46677778888888653  23331    234444432 344899999965 4  3542  3468889999999998765

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=91.57  E-value=0.24  Score=30.99  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=24.9

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+ +.|.+.|++..
T Consensus        68 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~-~~l~~~l~~~l  106 (107)
T 1gh2_A           68 ATNNISATPTFQFFRNKVRIDQYQGADA-VGLEEKIKQHL  106 (107)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESSCH-HHHHHHHHHHH
T ss_pred             HhcCCCcccEEEEEECCeEEEEEeCCCH-HHHHHHHHHhc
Confidence            3689999999987  5653  3467654 55888887653

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=91.52  E-value=0.28  Score=31.85  Aligned_cols=35  Identities=17%  Similarity=0.092  Sum_probs=27.2

Q ss_pred             hhCCCCcccEEEE--CCe----eeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~----~~i~G~~~~~~~~~~l~~~  169 (171)
                      .+++|.|+||+++  +|+    +...|..+.+.|.+.|++.
T Consensus        86 ~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           86 ERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             HHTTCCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             HhcCCccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            3689999999976  332    3457989999999988764

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=91.35  E-value=0.28  Score=29.31  Aligned_cols=29  Identities=14%  Similarity=0.295  Sum_probs=20.6

Q ss_pred             hCC--CCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793          136 SAN--ISGVPHFVLNGKHELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       136 ~~g--v~gvPtfvv~~~~~i~G~~~~~~~~~~l~~  168 (171)
                      ..|  +.++|+++++|+ .+.|.   +.+.+.+++
T Consensus        51 ~~~~~~~~vP~i~~~g~-~i~~~---~~l~~~~~~   81 (85)
T 1ego_A           51 KAGKPVETVPQIFVDQQ-HIGGY---TDFAAWVKE   81 (85)
T ss_dssp             HTCCCSCCSCEEEETTE-EEESS---HHHHHHHHH
T ss_pred             HhCCCCceeCeEEECCE-EEECH---HHHHHHHHH
Confidence            355  999999999998 46554   556665554

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=91.19  E-value=0.16  Score=34.95  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=27.1

Q ss_pred             hhCCCCcccEEEE---CCee--eeccCCC-HHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL---NGKH--ELSGGQP-PEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~~~~--~i~G~~~-~~~~~~~l~~~~  170 (171)
                      ..+||.|+||+++   +|+.  ...|..+ .+.|.+.|+++.
T Consensus       124 ~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          124 VKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             HHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             HHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence            5799999999875   3542  3469888 888888887653

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=91.09  E-value=0.19  Score=32.58  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=25.8

Q ss_pred             hCCCCcccEEEE--CCe---eeeccCCCHHHHHHHHHHH
Q 030793          136 SANISGVPHFVL--NGK---HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~---~~i~G~~~~~~~~~~l~~~  169 (171)
                      ++||.++||+++  +|+   ..+.|..+.+.|.+.|.+.
T Consensus        84 ~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~  122 (130)
T 2dml_A           84 QYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSA  122 (130)
T ss_dssp             HHTCCSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHH
T ss_pred             HcCCCccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHH
Confidence            578999999987  232   2457888998888877764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=90.98  E-value=0.38  Score=31.95  Aligned_cols=63  Identities=16%  Similarity=0.219  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEE-EE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHF-VL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtf-vv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      +.+.+.+++++.|++..  .+.+..   ..+     ...+||.|+|++ ++  +|+.  ...|..+.+.+.+.|+++.
T Consensus        70 ~~~~~~~~~~~~~~~~~--~~~d~~---~~~-----~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll  137 (151)
T 2f9s_A           70 SKIAVHNFMKSYGVNFP--VVLDTD---RQV-----LDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK  137 (151)
T ss_dssp             CHHHHHHHHHHHTCCSC--EEEETT---SHH-----HHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHcCCCce--EEECCc---hHH-----HHhcCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence            45667777777777643  222211   112     135899999995 45  3542  3458889999999998764

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=90.96  E-value=0.23  Score=33.14  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=40.0

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCccc-EEEEC--Cee--eeccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVP-HFVLN--GKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvP-tfvv~--~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      +.+.+.+++.+.|++... .+.+..   ..+.     ..+|+.++| +|+++  |+.  ...|..+.+.+.+.|+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~-~~~d~~---~~~~-----~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A           83 AADNARRFLGRYGNPFGR-VGVDAN---GRAS-----IEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             CHHHHHHHHHHHCCCCSE-EEEETT---SHHH-----HHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHcCCCCce-eeeCch---hHHH-----HhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            566778888888876431 111211   1121     358999999 67774  543  3568888888888777653

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=90.89  E-value=0.22  Score=33.82  Aligned_cols=112  Identities=8%  Similarity=-0.014  Sum_probs=67.3

Q ss_pred             HhhCChHHHHHHHHHHHHHhcCCccccCCCCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 030793           27 NKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECA  106 (171)
Q Consensus        27 ~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia  106 (171)
                      .+|+ .|..+.+.+.++.+.++ .+.+-.+..++..+...   .....+                ......+.+.+.+++
T Consensus        47 ~~C~-~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~---~~~~~~----------------~~~~~~~~~~~~~~~  105 (165)
T 3ha9_A           47 AWCP-SCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKA---LGLNKP----------------GYPPPDTPEMFRKFI  105 (165)
T ss_dssp             TTCT-THHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHH---HTCCST----------------TSCCCCCHHHHHHHH
T ss_pred             CCCc-chhhhHHHHHHHHHHcC-CcEEEEEEecccccccc---cccccc----------------cCCCCCCHHHHHHHH
Confidence            3454 68889999999998886 44443332333222111   111110                112235788899999


Q ss_pred             HHcCC-chhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCeeeeccCC-CHHHHHHHHHHHh
Q 030793          107 RKVGV-EGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKHELSGGQ-PPEVYLRAFQVAA  170 (171)
Q Consensus       107 ~~~Gl-d~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~~~i~G~~-~~~~~~~~l~~~~  170 (171)
                      ++.|+ +..  .+.+.    ..+.     ..+||.++|++++   +|+....|.. +.+.+.+.|+++.
T Consensus       106 ~~~~~~~~~--~~~d~----~~~~-----~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          106 ANYGDPSWI--MVMDD----GSLV-----EKFNVRSIDYIVIMDKSSNVLYAGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             HHHSCTTSE--EEECC----SHHH-----HHTTCCSSSEEEEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred             HHcCCCCee--EEeCh----HHHH-----HHhCCCCceEEEEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence            99998 432  12111    1222     3579999999987   4664446888 8999999998764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=90.86  E-value=0.42  Score=31.95  Aligned_cols=69  Identities=12%  Similarity=0.042  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE-C--Cee--eeccCCCHHHHHHHHHHHh
Q 030793           97 GDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL-N--GKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv-~--~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+.+.+.+++++.|++..  .+.+.. ....+.  .....+|+.|+|++++ +  |+.  ...|..+.+.+.+.|+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~--~~~d~~-~~~~~~--~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  151 (158)
T 3eyt_A           78 MTPISLKAFLHEYRIKFP--VGVDQP-GDGAMP--RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLL  151 (158)
T ss_dssp             SCHHHHHHHHHHTTCCSC--EEEECC-CSSSSC--HHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCce--EEEcCc-cchhhH--HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence            356777777788887643  121211 100000  0113589999996654 3  553  3468889999999998865

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=90.80  E-value=0.053  Score=32.44  Aligned_cols=30  Identities=17%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             hCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793          136 SANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~  167 (171)
                      +.|+.++|+++++|+ .+.|. +.+.+.+.|+
T Consensus        45 ~~g~~~vP~~~~~g~-~~~g~-~~~~l~~~l~   74 (81)
T 1h75_A           45 AQGFRQLPVVIAGDL-SWSGF-RPDMINRLHP   74 (81)
T ss_dssp             HTTCCSSCEEEETTE-EEESC-CHHHHGGGSC
T ss_pred             HhCCCccCEEEECCE-EEecC-CHHHHHHHHh
Confidence            589999999999997 46564 5666666554

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=90.79  E-value=0.42  Score=32.02  Aligned_cols=71  Identities=14%  Similarity=0.068  Sum_probs=42.7

Q ss_pred             CCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE-C--Cee--eeccCCCHHHHHHHHHHHhC
Q 030793           97 GDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL-N--GKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv-~--~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .+.+.+.+++++.|++..  .+.+.......+..  ....+||.|+|++++ +  |+.  ...|..+.+.+.+.|+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~--~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  155 (160)
T 3lor_A           80 MTPEALKVFIDEFGIKFP--VAVDMPREGQRIPS--TMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS  155 (160)
T ss_dssp             SCHHHHHHHHHHTTCCSC--EEEECCCTTCSSCH--HHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHcCCCCc--EEECCccccchhhh--HHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence            367778888888888753  11111111001100  113589999997655 3  542  34688899999999988753

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=90.75  E-value=0.24  Score=33.35  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             hCCCCcccEEEE---CCee--eeccCCCHHHHHHHHHHHh
Q 030793          136 SANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       136 ~~gv~gvPtfvv---~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+||.++||+++   +|+.  .+.|..+.+.+.+.|+++.
T Consensus       116 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~  155 (164)
T 2h30_A          116 NLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN  155 (164)
T ss_dssp             HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             HcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            589999999976   3543  3468889999999988654

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=90.73  E-value=0.3  Score=31.39  Aligned_cols=63  Identities=13%  Similarity=0.163  Sum_probs=38.9

Q ss_pred             CCHHHHHHHHHHcCC-chhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCee--eeccCCCHHHHHHHHHHH
Q 030793           97 GDKEFLVECARKVGV-EGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gl-d~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .+.+.+.+..++.|+ +..  .+.+..   ..+.     ..+|+.|+|++++   +|+.  ...|..+.+.+.+.|+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~--~~~d~~---~~~~-----~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           69 QSEADFKNWYKGLDYKNLP--VLVDPS---GKLL-----ETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             CCHHHHHHHHTTCCCTTCC--EEECTT---CHHH-----HHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             hhHHHHHHHHhhcCCCCee--EEECcc---hHHH-----HHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            345666666666666 221  222211   1111     3589999999876   3542  347888999999998875

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=90.55  E-value=0.21  Score=33.22  Aligned_cols=64  Identities=16%  Similarity=0.134  Sum_probs=43.0

Q ss_pred             CCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCee--eeccCCCHHHHHHHHHHHh
Q 030793           97 GDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+.+.+.+++++.|++..  .+.+..   ..+.     ..+||.++|++++   +|+.  ...|..+.+.+.+.|+++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~--~~~d~~---~~~~-----~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  140 (153)
T 2l5o_A           72 DPIESVRQYVKDYGLPFT--VMYDAD---KAVG-----QAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAW  140 (153)
T ss_dssp             SCHHHHHHHHHHTTCCSE--EEECSS---CHHH-----HHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCce--EEcCch---HHHH-----HHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            456778888888888753  222211   1221     2578999999876   4553  3568889999999888764

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=90.21  E-value=0.27  Score=33.70  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=15.7

Q ss_pred             hhCCCCcccEEEE---CCee--eeccC
Q 030793          135 YSANISGVPHFVL---NGKH--ELSGG  156 (171)
Q Consensus       135 ~~~gv~gvPtfvv---~~~~--~i~G~  156 (171)
                      ...++.|+|||++   +|+.  .+.|+
T Consensus        94 ~~~~v~~~PT~~f~~~~G~~v~~~~G~  120 (151)
T 3ph9_A           94 LSPDGQYVPRIMFVDPSLTVRADIAGR  120 (151)
T ss_dssp             GCTTCCCSSEEEEECTTSCBCTTCCCS
T ss_pred             hhcCCCCCCEEEEECCCCCEEEEEeCC
Confidence            3678999999987   3542  34687

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=90.11  E-value=0.33  Score=30.93  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=25.7

Q ss_pred             CCCcccEEEE--CC-e---eeeccCCCHHHHHHHHHHHh
Q 030793          138 NISGVPHFVL--NG-K---HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       138 gv~gvPtfvv--~~-~---~~i~G~~~~~~~~~~l~~~~  170 (171)
                      +|.|+||+++  +| +   ..+.|..+.+.|.+.|++..
T Consensus        78 ~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~  116 (121)
T 2djj_A           78 EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  116 (121)
T ss_dssp             CCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             ccCcCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhcc
Confidence            9999999987  33 3   24578889999999988754

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=90.08  E-value=0.42  Score=34.09  Aligned_cols=36  Identities=11%  Similarity=0.222  Sum_probs=28.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|++..
T Consensus       162 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l  201 (210)
T 3apq_A          162 RMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHV  201 (210)
T ss_dssp             HHTTCCSSSEEEEECTTSCCEECCSCCCHHHHHHHHHHHH
T ss_pred             HHcCCCcCCeEEEEECCCceeEecCCCCHHHHHHHHHHhC
Confidence            4689999999987  5652  3578889999999887653

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=89.86  E-value=0.39  Score=32.18  Aligned_cols=35  Identities=6%  Similarity=0.069  Sum_probs=24.6

Q ss_pred             hhCCCCcccEEEE--CCee-----------eeccCCC-HHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH-----------ELSGGQP-PEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~-----------~i~G~~~-~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.           .+.|..+ .++|.+.|+++
T Consensus        71 ~~~~i~~~Pt~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A           71 KMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  119 (142)
T ss_dssp             TSSCSCSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence            3689999999976  4542           2446554 78888887765

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=89.84  E-value=0.27  Score=29.11  Aligned_cols=50  Identities=20%  Similarity=0.232  Sum_probs=27.8

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccC
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGG  156 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~  156 (171)
                      .+..+..+.|++-..-.++. +   .....++.. ..|+.++|+++++|+ .+.|.
T Consensus        16 ~~~~~l~~~~i~~~~~~i~~-~---~~~~~~~~~-~~~~~~vP~l~~~g~-~i~g~   65 (82)
T 1fov_A           16 RAKALLSSKGVSFQELPIDG-N---AAKREEMIK-RSGRTTVPQIFIDAQ-HIGGY   65 (82)
T ss_dssp             HHHHHHHHHTCCCEEEECTT-C---SHHHHHHHH-HHSSCCSCEEEETTE-EEESH
T ss_pred             HHHHHHHHCCCCcEEEECCC-C---HHHHHHHHH-HhCCCCcCEEEECCE-EEeCH
Confidence            34455566677654111222 1   123333322 468999999999998 46554

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=89.63  E-value=0.14  Score=30.65  Aligned_cols=27  Identities=19%  Similarity=0.183  Sum_probs=19.2

Q ss_pred             hCCCCcccEEEECCeeeeccCC-CHHHH
Q 030793          136 SANISGVPHFVLNGKHELSGGQ-PPEVY  162 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~-~~~~~  162 (171)
                      ++|+.++||++++|+....|.. +.++|
T Consensus        50 ~~gv~~vPt~~i~g~~~~~G~~~~~~~l   77 (80)
T 2k8s_A           50 KAGVKSVPALVIDGAAFHINFGAGIDDL   77 (80)
T ss_dssp             HHTCCEEEEEEETTEEEEEEEEEEHHHH
T ss_pred             HcCCCcCCEEEECCEEEEeccCcCHHHh
Confidence            5799999999999984445543 34444

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=89.23  E-value=0.38  Score=39.47  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=28.7

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~  168 (171)
                      .++||.++||+++||+....|..+.+.+.+.++.
T Consensus       164 ~~~~i~svPt~~i~g~~~~~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          164 TERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDT  197 (521)
T ss_dssp             HHTTCCSSSEEEETTEEEEESCCCHHHHHHHHCC
T ss_pred             HHhCCCccCEEEECCEEEecCCCCHHHHHHHHhh
Confidence            4689999999999998766799999988887653

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=89.22  E-value=0.49  Score=31.45  Aligned_cols=67  Identities=22%  Similarity=0.294  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccE-EEEC--Ce--eeeccCCCHHHHHHHHHHHh
Q 030793           97 GDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPH-FVLN--GK--HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPt-fvv~--~~--~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+.+.+.+++++.|++..  .+.+.......     ....+|+.++|+ |+|+  |+  +...|..+.+.+.+.|++..
T Consensus        72 ~~~~~~~~~~~~~~~~~~--~~~d~~~~~~~-----~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~  143 (154)
T 3ia1_A           72 DTREVVLEYMKTYPRFIP--LLASDRDRPHE-----VAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAG  143 (154)
T ss_dssp             CCHHHHHHHHTTCTTEEE--CBCCSSCCHHH-----HHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHcCCCcc--cccccccchHH-----HHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence            456777778777777543  22221001111     123689999999 5563  54  23578889999999998754

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=89.16  E-value=0.53  Score=28.23  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=18.0

Q ss_pred             CCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793          138 NISGVPHFVLNGKHELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       138 gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~  168 (171)
                      ++.++|+++++|+ .+.|.   +.+.+.+++
T Consensus        58 ~~~~vP~i~i~g~-~i~g~---~~i~~~~~~   84 (89)
T 3msz_A           58 PISTVPQIFIDDE-HIGGF---TELKANADK   84 (89)
T ss_dssp             CCCSSCEEEETTE-EEESH---HHHHHTHHH
T ss_pred             CCCccCEEEECCE-EEeCh---HHHHHHHHH
Confidence            3399999999998 46554   444444443

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=89.09  E-value=0.3  Score=30.75  Aligned_cols=29  Identities=14%  Similarity=0.190  Sum_probs=22.1

Q ss_pred             hCCCCcccEEEECC-eeeeccCCCHHHHHHHH
Q 030793          136 SANISGVPHFVLNG-KHELSGGQPPEVYLRAF  166 (171)
Q Consensus       136 ~~gv~gvPtfvv~~-~~~i~G~~~~~~~~~~l  166 (171)
                      ..|..++|+++++| + .+.| .+.+.+.++|
T Consensus        72 ~~g~~~vP~l~i~~~~-~igg-~~~~~l~~~L  101 (103)
T 3nzn_A           72 FNPSVSFPTTIINDEK-AIVG-FKEKEIRESL  101 (103)
T ss_dssp             HCTTCCSCEEEETTTE-EEES-CCHHHHHHHT
T ss_pred             hCCCCccCEEEECCCE-EEEc-CCHHHHHHHh
Confidence            36999999999998 6 3544 5777777765

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=89.04  E-value=0.36  Score=32.03  Aligned_cols=63  Identities=17%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCee--eeccCCCHHHHHHHHHHHh
Q 030793           99 KEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        99 ~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+.+.+++++.|++.- ..+.+..   ..+.     ..+|+.++|++++   +|+.  ...|..+.+.+.+.|+++.
T Consensus        75 ~~~~~~~~~~~~~~~~-~~~~d~~---~~~~-----~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~  142 (152)
T 2lja_A           75 KKAWENMVTKDQLKGI-QLHMGTD---RTFM-----DAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELL  142 (152)
T ss_dssp             HHHHHHHHHHHTCCSE-EEECSSC---THHH-----HHTTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCc-eeecCcc---hhHH-----HHcCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHh
Confidence            4566777777777642 1222211   1122     2589999999876   3542  2357778889999988764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=88.92  E-value=0.57  Score=34.91  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=27.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.+.+.|...
T Consensus        74 ~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~  112 (287)
T 3qou_A           74 AQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDXV  112 (287)
T ss_dssp             HTTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHcCCCCCCeEEEEECCEEEEEeeCCCCHHHHHHHHHHH
Confidence            4799999999987  6763  257888888888887654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=88.71  E-value=0.12  Score=33.00  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             hCCCCcccEEEECCeeeeccCC------CHHHHHHHHHHH
Q 030793          136 SANISGVPHFVLNGKHELSGGQ------PPEVYLRAFQVA  169 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~------~~~~~~~~l~~~  169 (171)
                      .+|+.++||++++|+. +.|..      +.+.|.+.|+++
T Consensus        68 ~~~v~~~Pt~~~~g~~-v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           68 WTGRGTVPNVFIGGKQ-IGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHSCCSSCEEEETTEE-EECHHHHHHHHHTTCHHHHHHHT
T ss_pred             HhCCCCcCEEEECCEE-ECChHHHHHHHhCChHHHHHHHc
Confidence            5799999999999974 43322      333566666543

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=88.34  E-value=0.56  Score=29.58  Aligned_cols=54  Identities=22%  Similarity=0.280  Sum_probs=30.5

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP  159 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~  159 (171)
                      ..+..+..+.|++-..-.++. +   ..+.+.+.. ..|+.++|+++++|++ +.|..+.
T Consensus        36 ~~~~~~L~~~~i~~~~vdi~~-~---~~~~~~l~~-~~g~~~vP~v~i~g~~-igg~d~~   89 (105)
T 2yan_A           36 KQILEILNSTGVEYETFDILE-D---EEVRQGLKA-YSNWPTYPQLYVKGEL-VGGLDIV   89 (105)
T ss_dssp             HHHHHHHHHHTCCCEEEEGGG-C---HHHHHHHHH-HHTCCSSCEEEETTEE-EECHHHH
T ss_pred             HHHHHHHHHCCCCeEEEECCC-C---HHHHHHHHH-HHCCCCCCeEEECCEE-EeChHHH
Confidence            345556666677644111211 1   234433332 3588999999999984 6665433

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=88.21  E-value=0.75  Score=30.55  Aligned_cols=67  Identities=9%  Similarity=0.080  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCC--CCcccEEE-E--CCe--eeeccCCCHHHHHHHHHHH
Q 030793           97 GDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSAN--ISGVPHFV-L--NGK--HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~g--v~gvPtfv-v--~~~--~~i~G~~~~~~~~~~l~~~  169 (171)
                      .+.+.+.+++++.|++... .... ......+     ...+|  +.++|+++ +  +|+  +...|..+.+.+.+.|+++
T Consensus        66 d~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-----~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  138 (151)
T 3raz_A           66 DTSDNIGNFLKQTPVSYPI-WRYT-GANSRNF-----MKTYGNTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLA  138 (151)
T ss_dssp             SCHHHHHHHHHHSCCSSCE-EEEC-CSCHHHH-----HHTTTCCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHcCCCCce-EecC-ccchHHH-----HHHhCCccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            4566777788888876531 1122 1111111     12467  99999655 5  354  2457888999999999887


Q ss_pred             h
Q 030793          170 A  170 (171)
Q Consensus       170 ~  170 (171)
                      .
T Consensus       139 ~  139 (151)
T 3raz_A          139 H  139 (151)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=87.95  E-value=0.13  Score=33.33  Aligned_cols=34  Identities=15%  Similarity=0.365  Sum_probs=24.6

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      ++||.++|||++  +|+.  .+.| .+.+.+.+.|+++.
T Consensus        84 ~~~v~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~  121 (130)
T 1wmj_A           84 KYNVEAMPTFLFIKDGAEADKVVG-ARKDDLQNTIVKHV  121 (130)
T ss_dssp             HHTCCSSCCCCBCTTTTCCBCCCT-TCTTTHHHHHHHHT
T ss_pred             HcCCCccceEEEEeCCeEEEEEeC-CCHHHHHHHHHHHH
Confidence            579999999998  5652  2456 36677888877654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=87.83  E-value=0.29  Score=31.84  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=17.2

Q ss_pred             hCCCCcccEEEECCeeeeccCCC
Q 030793          136 SANISGVPHFVLNGKHELSGGQP  158 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~~  158 (171)
                      ..|+.++|+++++|++ +.|..+
T Consensus        77 ~~g~~tvP~vfi~g~~-igG~d~   98 (118)
T 3c1r_A           77 INGQRTVPNIYINGKH-IGGNDD   98 (118)
T ss_dssp             HHSCCSSCEEEETTEE-EESHHH
T ss_pred             HhCCCCcCEEEECCEE-EEcHHH
Confidence            4688999999999984 666543

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=87.63  E-value=0.84  Score=30.07  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=25.2

Q ss_pred             hCCCCcccEEEE--CCee--eeccCC-------CHHHHHHHHHHH
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQ-------PPEVYLRAFQVA  169 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~-------~~~~~~~~l~~~  169 (171)
                      +++|.++|||++  +|+.  .+.|..       +.+.+++.|.+.
T Consensus        75 ~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           75 HYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             SCCSSCCSEEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            699999999987  4542  346765       678888888764

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=87.41  E-value=0.58  Score=30.64  Aligned_cols=64  Identities=11%  Similarity=0.062  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE-C--CeeeeccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL-N--GKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv-~--~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      +.+.+.+++++.|++..  .+.+..   ..+.   ....+||.++|++++ +  |+ .+.+..+.+.+.+.|++..
T Consensus        74 ~~~~~~~~~~~~~~~~~--~~~d~~---~~~~---~~~~~~v~~~P~~~lid~~G~-i~~~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A           74 NREEWATKAVYMPQGWI--VGWNKA---GDIR---TRQLYDIRATPTIYLLDGRKR-VILKDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CHHHHHHHHTTSCTTCE--EEECTT---CHHH---HTTCSCCCSSSEEEEECTTCB-EEECSCCHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHcCCCcc--eeeCCc---cchh---hHHHcCCCCCCeEEEECCCCC-EEecCCCHHHHHHHHHHHc
Confidence            56677788888787643  222211   1111   124689999998765 3  55 4567778999999887653

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=87.40  E-value=1.1  Score=33.83  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             hhCCCCcc--cEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGV--PHFVLNGKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gv--Ptfvv~~~~~i~G~~~~~~~~~~l~~~  169 (171)
                      ...|..+|  |.++|||+..+.|. +.+.+.++|.++
T Consensus       106 ~~~G~~tVyTPqI~Ing~~~v~G~-d~~~l~~~l~~~  141 (270)
T 2axo_A          106 RALGRNGVYTPQAILNGRDHVKGA-DVRGIYDRLDAF  141 (270)
T ss_dssp             HHTTCSCCCSSEEEETTTEEEETT-CHHHHHHHHHHH
T ss_pred             HHhCCCcccCCEEEECCEEeecCC-CHHHHHHHHHHh
Confidence            46799888  99999998556675 578888888754

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=87.39  E-value=2.8  Score=29.09  Aligned_cols=71  Identities=17%  Similarity=0.168  Sum_probs=43.5

Q ss_pred             CHHHHHHHH-HHcCCchhHhhhc---CCCCChHHHHHHHHHhhCCCCccc-------EEEEC--Cee--eeccCCCHHHH
Q 030793           98 DKEFLVECA-RKVGVEGAAEFLD---DPNSGLNEVHEELKKYSANISGVP-------HFVLN--GKH--ELSGGQPPEVY  162 (171)
Q Consensus        98 ~~~~L~~ia-~~~Gld~~~~~~~---~~~~~~~~v~~~~~~~~~gv~gvP-------tfvv~--~~~--~i~G~~~~~~~  162 (171)
                      +.+.+.+++ ++.|++-.  .+.   ........+...+.....|+.|+|       +|+|+  |+.  ...|..+.+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~p--~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l  176 (190)
T 2vup_A           99 NEEEIKEFVCTKFKAEFP--IMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDI  176 (190)
T ss_dssp             CHHHHHHHHHHHHCCCSC--BBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHH
T ss_pred             CHHHHHHHHHHhcCCCeE--EEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHH
Confidence            677888888 78888643  221   111111112222223357999999       77885  542  34577888999


Q ss_pred             HHHHHHHh
Q 030793          163 LRAFQVAA  170 (171)
Q Consensus       163 ~~~l~~~~  170 (171)
                      .+.|+++.
T Consensus       177 ~~~i~~ll  184 (190)
T 2vup_A          177 EKKLIPLL  184 (190)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888764

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=86.88  E-value=0.58  Score=29.81  Aligned_cols=36  Identities=11%  Similarity=0.064  Sum_probs=25.6

Q ss_pred             hhCCCCcccEEEEC--Ce--eeeccC----CCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVLN--GK--HELSGG----QPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv~--~~--~~i~G~----~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++-  |+  ..+.|.    .+.+.|.+.|+++.
T Consensus        69 ~~~~v~~~Pt~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l  112 (122)
T 3aps_A           69 QKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKL  112 (122)
T ss_dssp             HHTTCCSSSEEEEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHH
T ss_pred             HHcCCCccceEEEEeCCCccceeeccccCcCCHHHHHHHHHHHH
Confidence            36899999999873  22  124454    78889988887653

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=86.86  E-value=0.94  Score=29.36  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=26.2

Q ss_pred             hhCCC---CcccEEEE---CCee--eecc-------CCCHHHHHHHHHHHh
Q 030793          135 YSANI---SGVPHFVL---NGKH--ELSG-------GQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv---~gvPtfvv---~~~~--~i~G-------~~~~~~~~~~l~~~~  170 (171)
                      .++||   .|+||+++   +|+.  ...|       ..+.+.+.+.|+++.
T Consensus        82 ~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           82 QAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             HHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             HHhCCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            36899   99999986   3552  2345       568888888888764

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=86.69  E-value=0.35  Score=30.28  Aligned_cols=20  Identities=15%  Similarity=0.308  Sum_probs=16.0

Q ss_pred             hCCCCcccEEEECCeeeeccC
Q 030793          136 SANISGVPHFVLNGKHELSGG  156 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~  156 (171)
                      ..|+.++|+++++|++ +.|.
T Consensus        63 ~~g~~~vP~i~~~g~~-i~g~   82 (105)
T 1kte_A           63 LTGARTVPRVFIGKEC-IGGC   82 (105)
T ss_dssp             HHSCCCSCEEEETTEE-EESH
T ss_pred             HhCCCCcCeEEECCEE-Eecc
Confidence            4689999999999984 5553

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=86.32  E-value=0.57  Score=30.38  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=25.3

Q ss_pred             hCCCCcccEEEE--CCe----eeec-cCCCHHHHHHHHHHHh
Q 030793          136 SANISGVPHFVL--NGK----HELS-GGQPPEVYLRAFQVAA  170 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~----~~i~-G~~~~~~~~~~l~~~~  170 (171)
                      +++|.|+||+++  +|+    ..+. |..+.+.|.+.|++..
T Consensus        76 ~~~v~~~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A           76 QYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHA  117 (133)
T ss_dssp             SCCCSSSSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHS
T ss_pred             hcCCCcCCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhc
Confidence            589999999987  232    1234 5578888998888753

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=85.92  E-value=1.2  Score=27.31  Aligned_cols=54  Identities=9%  Similarity=0.024  Sum_probs=32.5

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCC--CCcccEEEECCeeeeccCCCH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSAN--ISGVPHFVLNGKHELSGGQPP  159 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~g--v~gvPtfvv~~~~~i~G~~~~  159 (171)
                      ....++..+.|++-..-.++..    ...++.+.. ..|  ...+|.++++|++ +.|..+.
T Consensus        22 ~~ak~~L~~~~i~~~~~di~~~----~~~~~~l~~-~~g~~~~~vP~ifi~g~~-igG~d~l   77 (93)
T 1t1v_A           22 SEVTRILDGKRIQYQLVDISQD----NALRDEMRT-LAGNPKATPPQIVNGNHY-CGDYELF   77 (93)
T ss_dssp             HHHHHHHHHTTCCCEEEETTSC----HHHHHHHHH-HTTCTTCCSCEEEETTEE-EEEHHHH
T ss_pred             HHHHHHHHHCCCceEEEECCCC----HHHHHHHHH-HhCCCCCCCCEEEECCEE-EeCHHHH
Confidence            4566677788887552223221    344444433 246  7799999999984 6665433

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=85.82  E-value=0.74  Score=29.93  Aligned_cols=59  Identities=15%  Similarity=0.147  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE-C--Cee--eeccCCCHHHHHHHH
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL-N--GKH--ELSGGQPPEVYLRAF  166 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv-~--~~~--~i~G~~~~~~~~~~l  166 (171)
                      +.+.+.++.++.|++..  .+.+..   ..+     ...+|+.++|++++ +  |+.  ...|..+.+.|.+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~--~~~d~~---~~~-----~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A           81 NQQVVEDFIKANKLTFP--IVLDSK---GEL-----MKEYHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CHHHHHHHHHHTTCCSC--EEECSS---SHH-----HHHTTCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCcee--EEEcCc---hhH-----HHhcCcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            56677777777777643  222211   122     13589999999765 3  442  457888999988876

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=85.61  E-value=0.65  Score=29.72  Aligned_cols=34  Identities=12%  Similarity=0.174  Sum_probs=23.8

Q ss_pred             hhCCCCcccEEEE--C----Cee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--N----GKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~----~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +    |+.  .+.|..+ +.+.+.+++.
T Consensus        70 ~~~~i~~~Pt~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~  111 (118)
T 2f51_A           70 DAYGVSSIPALFFVKKEGNEIKTLDQFVGADV-SRIKADIEKF  111 (118)
T ss_dssp             HHTTCCSSSEEEEEEEETTEEEEEEEEESCCH-HHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEeCCCCcceEEEeecCCCH-HHHHHHHHHh
Confidence            3689999999987  3    442  3567764 5588877753

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=85.56  E-value=1.1  Score=28.72  Aligned_cols=58  Identities=24%  Similarity=0.221  Sum_probs=32.3

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPE  160 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~  160 (171)
                      .....+..+.|++-..-.++. .....++++.+.. ..|..++|+++++|+ .+.|..+..
T Consensus        31 ~~ak~~L~~~~i~~~~~dvd~-~~~~~~~~~~l~~-~~g~~tvP~vfi~g~-~igG~d~l~   88 (114)
T 3h8q_A           31 TRVKELFSSLGVECNVLELDQ-VDDGARVQEVLSE-ITNQKTVPNIFVNKV-HVGGCDQTF   88 (114)
T ss_dssp             HHHHHHHHHTTCCCEEEETTT-STTHHHHHHHHHH-HHSCCSSCEEEETTE-EEESHHHHH
T ss_pred             HHHHHHHHHcCCCcEEEEecC-CCChHHHHHHHHH-HhCCCccCEEEECCE-EEeCHHHHH
Confidence            345566677777654111221 0111334444432 357899999999998 476654433

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=85.55  E-value=1.5  Score=27.91  Aligned_cols=52  Identities=17%  Similarity=0.328  Sum_probs=31.7

Q ss_pred             HHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCC
Q 030793          100 EFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP  158 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~  158 (171)
                      ....++..+.|++-. ..+..+     ..+++.+.. ..|..++|.++|||+ .|.|..+
T Consensus        37 ~~ak~~L~~~gi~~~~~dI~~~-----~~~~~~l~~-~~g~~tvP~ifi~g~-~iGG~d~   89 (109)
T 3ipz_A           37 NTVVQILKNLNVPFEDVNILEN-----EMLRQGLKE-YSNWPTFPQLYIGGE-FFGGCDI   89 (109)
T ss_dssp             HHHHHHHHHTTCCCEEEEGGGC-----HHHHHHHHH-HHTCSSSCEEEETTE-EEECHHH
T ss_pred             HHHHHHHHHcCCCcEEEECCCC-----HHHHHHHHH-HHCCCCCCeEEECCE-EEeCHHH
Confidence            346667777788754 222222     344444443 237789999999998 4666543

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=85.35  E-value=0.77  Score=27.87  Aligned_cols=51  Identities=12%  Similarity=0.143  Sum_probs=28.3

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCC
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ  157 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~  157 (171)
                      .+..+..+.|++-..-.++. +   ....+++.. ..|+.++|+++++|+ .+.|..
T Consensus        21 ~~~~~L~~~~i~~~~~di~~-~---~~~~~~l~~-~~~~~~vP~l~~~g~-~i~g~~   71 (92)
T 2khp_A           21 RAKALLARKGAEFNEIDASA-T---PELRAEMQE-RSGRNTFPQIFIGSV-HVGGCD   71 (92)
T ss_dssp             HHHHHHHHTTCCCEEEESTT-S---HHHHHHHHH-HHTSSCCCEEEETTE-EEESHH
T ss_pred             HHHHHHHHcCCCcEEEECCC-C---HHHHHHHHH-HhCCCCcCEEEECCE-EEcCHH
Confidence            34555666677654111221 1   233333332 358899999999997 465543

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=85.24  E-value=0.54  Score=31.84  Aligned_cols=63  Identities=19%  Similarity=0.323  Sum_probs=38.6

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCccc-EEEEC--Cee--eeccCCCHHHHHHHHHHH
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVP-HFVLN--GKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvP-tfvv~--~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      +.+.+.+++++.|++... .+.+..   ..+.     ..+||.|+| +|+|+  |+.  ...|..+.+.+.+.|+++
T Consensus        91 ~~~~~~~~~~~~~~~~~~-~~~d~~---~~~~-----~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~  158 (168)
T 2b1k_A           91 DRQKAISWLKELGNPYAL-SLFDGD---GMLG-----LDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL  158 (168)
T ss_dssp             CHHHHHHHHHHHCCCCSE-EEEETT---CHHH-----HHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHH
T ss_pred             ChHHHHHHHHHcCCCCce-eeECcc---hHHH-----HHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            466777777777776431 111211   1121     357899999 67775  542  346888888888776654

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=84.88  E-value=1.1  Score=32.05  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=27.7

Q ss_pred             hhCCCCcccEEEE--CCee-eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH-ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~-~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+. ...|..+.+.+.+.|.+.
T Consensus       198 ~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~l~~~  235 (241)
T 3idv_A          198 KRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQ  235 (241)
T ss_dssp             HHTTCCSSSEEEEEETTEEEECCSCCSHHHHHHHHHHH
T ss_pred             HHcCCcccCEEEEEECCeEEEecCCCCHHHHHHHHHhh
Confidence            4799999999987  5653 347888999999988764

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=84.70  E-value=0.52  Score=31.22  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=17.4

Q ss_pred             hCCCCcccEEEECCeeeeccCCCH
Q 030793          136 SANISGVPHFVLNGKHELSGGQPP  159 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~~~  159 (171)
                      ..|..+||+++++|++ +.|..+.
T Consensus        89 ~~g~~tVP~vfi~g~~-igG~d~l  111 (129)
T 3ctg_A           89 ISGQKTVPNVYINGKH-IGGNSDL  111 (129)
T ss_dssp             HHSCCSSCEEEETTEE-EESHHHH
T ss_pred             HhCCCCCCEEEECCEE-EcCHHHH
Confidence            3588999999999984 6665433

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=84.40  E-value=1.5  Score=28.60  Aligned_cols=64  Identities=17%  Similarity=0.075  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCeeeeccCCCHHHHHHHHHHHh
Q 030793           99 KEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        99 ~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+.+.+.+++.|++..  .+.+.......+.     ..+|+.++|++++   +|+. +....+.+.+.+.|+++.
T Consensus        79 ~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~-----~~~~v~~~P~~~lid~~G~i-~~~~~~~~~l~~~l~~ll  145 (148)
T 3fkf_A           79 REAWETAIKKDTLSWD--QVCDFTGLSSETA-----KQYAILTLPTNILLSPTGKI-LARDIQGEALTGKLKELL  145 (148)
T ss_dssp             HHHHHHHHHHTTCCSE--EECCSCGGGCHHH-----HHTTCCSSSEEEEECTTSBE-EEESCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCce--EEEccCCcchHHH-----HhcCCCCcCEEEEECCCCeE-EEecCCHHHHHHHHHHHH
Confidence            4456666677777653  2222110011111     3589999999765   3552 332338888999888765

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.13  E-value=1.1  Score=29.49  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=16.1

Q ss_pred             hCCCCcccEEEECCeeeeccC
Q 030793          136 SANISGVPHFVLNGKHELSGG  156 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~  156 (171)
                      ..|+.++|+++++|+ .+.|.
T Consensus        75 ~~g~~~vP~l~i~G~-~igg~   94 (130)
T 2cq9_A           75 MTGERTVPRIFVNGT-FIGGA   94 (130)
T ss_dssp             HHSSCCSSEEEETTE-EEEEH
T ss_pred             HhCCCCcCEEEECCE-EEcCh
Confidence            468999999999998 46554

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=83.96  E-value=1.2  Score=29.00  Aligned_cols=34  Identities=15%  Similarity=0.094  Sum_probs=24.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCC-------CHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQ-------PPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~-------~~~~~~~~l~~  168 (171)
                      .+++|.++|||++  +|+.  .+.|..       +.+.++..|.+
T Consensus        67 ~~~~v~~~PT~~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           67 QHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             TTCCGGGCSEEEEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             HHCCCCCCCEEEEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            4799999999987  5652  345654       57778877764

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=83.82  E-value=1.1  Score=28.48  Aligned_cols=57  Identities=18%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCC
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP  158 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~  158 (171)
                      ..+..+..+.|++-..-.++.......++++.+.. ..|..++|+++++|+ .|.|..+
T Consensus        33 ~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~-~~g~~tvP~ifi~g~-~igG~~~   89 (113)
T 3rhb_A           33 TEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLER-LTGQHTVPNVFVCGK-HIGGCTD   89 (113)
T ss_dssp             HHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHH-HHSCCSSCEEEETTE-EEESHHH
T ss_pred             HHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHH-HhCCCCcCEEEECCE-EEcCcHH
Confidence            34566777778765411111100011233333332 358899999999998 4666543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=83.79  E-value=1.4  Score=31.60  Aligned_cols=35  Identities=17%  Similarity=0.361  Sum_probs=27.1

Q ss_pred             hhCCCCcccEEEE--CCe-eeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~-~~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++  +|+ ....|..+.+.+.+.+.+.
T Consensus        83 ~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~  120 (241)
T 3idv_A           83 SRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREV  120 (241)
T ss_dssp             HHTTCCSSSEEEEEETTEEEECCSCSCHHHHHHHHHHH
T ss_pred             HhcCCCcCCEEEEEcCCCcccccCcccHHHHHHHHhhc
Confidence            4699999999987  454 2346888999999888765

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=83.76  E-value=1.6  Score=28.79  Aligned_cols=58  Identities=3%  Similarity=-0.114  Sum_probs=35.3

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhh-------CCCCcccEEEECCeeeeccCCCHHHH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYS-------ANISGVPHFVLNGKHELSGGQPPEVY  162 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~-------~gv~gvPtfvv~~~~~i~G~~~~~~~  162 (171)
                      .....+....|++-.+-.++..    .+.++++....       .|...+|.++++|+| +.|..+...+
T Consensus        20 ~~aK~lL~~kgV~feEidI~~d----~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~-iGG~Dd~~~l   84 (121)
T 1u6t_A           20 QDVLGFLEANKIGFEEKDIAAN----EENRKWMRENVPENSRPATGYPLPPQIFNESQY-RGDYDAFFEA   84 (121)
T ss_dssp             HHHHHHHHHTTCCEEEEECTTC----HHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEE-EEEHHHHHHH
T ss_pred             HHHHHHHHHCCCceEEEECCCC----HHHHHHHHHhccccccccCCCcCCCEEEECCEE-EechHHHHHh
Confidence            3566788888987653223321    34444444321       288899999999985 7665544444

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=83.67  E-value=1.1  Score=31.84  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=24.3

Q ss_pred             hhCCCCcccEEEE--CCe---eeeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK---HELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~---~~i~G~~~~~~~~~~l~~  168 (171)
                      .++||.++||+++  +|+   ....|..+.+.+...+..
T Consensus        72 ~~~~v~~~Pt~~~~~~g~~~~~~~~G~~~~~~l~~~l~~  110 (226)
T 1a8l_A           72 KRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFLED  110 (226)
T ss_dssp             HHTTCCSSSEEEEEETTBCCSEEEESCCCTTHHHHHHHH
T ss_pred             HHcCCCcCceEEEEcCCceeeEEEeccCcHHHHHHHHHH
Confidence            4799999999998  563   345687766666665554

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=83.66  E-value=1.2  Score=26.90  Aligned_cols=55  Identities=13%  Similarity=-0.034  Sum_probs=30.5

Q ss_pred             HHHHHHHHcCCchhHhhhcC-CCCChHHHHHHHHHhhCCCC-----cccEEEE-CCeeeeccCC
Q 030793          101 FLVECARKVGVEGAAEFLDD-PNSGLNEVHEELKKYSANIS-----GVPHFVL-NGKHELSGGQ  157 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~-~~~~~~~v~~~~~~~~~gv~-----gvPtfvv-~~~~~i~G~~  157 (171)
                      ....+..+.|++-..-.++. +.....+.++++.. ..|..     ++|.+++ +|++ +.|..
T Consensus        19 ~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~-~~g~~~~~~~tvP~v~i~~g~~-igG~d   80 (87)
T 1aba_A           19 NAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLT-KLGRDTQIGLTMPQVFAPDGSH-IGGFD   80 (87)
T ss_dssp             HHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHH-HHTCSCCTTCCSCEEECTTSCE-EESHH
T ss_pred             HHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHH-HhCCCCCCCCccCEEEEECCEE-EeCHH
Confidence            45567777888755211221 00011345454443 23666     8999999 8884 66643

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=83.27  E-value=1.2  Score=30.13  Aligned_cols=20  Identities=25%  Similarity=0.451  Sum_probs=16.2

Q ss_pred             hCCCCcccEEEECCeeeeccC
Q 030793          136 SANISGVPHFVLNGKHELSGG  156 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~  156 (171)
                      ..|+.++|+++++|+ .+.|.
T Consensus        97 ~~g~~tvP~ifi~G~-~igG~  116 (146)
T 2ht9_A           97 MTGERTVPRIFVNGT-FIGGA  116 (146)
T ss_dssp             HHSCCCSCEEEETTE-EEESH
T ss_pred             HhCCCCcCeEEECCE-EEeCc
Confidence            478999999999998 46554

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=83.25  E-value=1.3  Score=29.33  Aligned_cols=65  Identities=14%  Similarity=0.065  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCeeeeccCCCHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      +.+.+.+..++.|++..  .+.+.    ......+ ...+||.++|++++   +|+. +....+.+.+.+.|+++.
T Consensus        73 ~~~~~~~~~~~~~~~~~--~~~d~----~~~~~~~-~~~~~v~~~P~~~lid~~G~i-~~~~~~~~~l~~~l~~l~  140 (152)
T 2lrn_A           73 REEDWKKAIEEDKSYWN--QVLLQ----KDDVKDV-LESYCIVGFPHIILVDPEGKI-VAKELRGDDLYNTVEKFV  140 (152)
T ss_dssp             CHHHHHHHHHHHTCCSE--EEEEC----HHHHHHH-HHHTTCCSSCEEEEECTTSEE-EEECCCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCe--EEecc----cchhHHH-HHHhCCCcCCeEEEECCCCeE-EEeeCCHHHHHHHHHHHH
Confidence            34556666666676543  22221    1111111 23689999999654   3552 322245667777777654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=83.17  E-value=0.94  Score=31.21  Aligned_cols=65  Identities=11%  Similarity=0.216  Sum_probs=40.5

Q ss_pred             CCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCccc-EEEEC--Cee--eeccCCCHHHHHHHHHHHh
Q 030793           97 GDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVP-HFVLN--GKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvP-tfvv~--~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+.+.+.+++++.|++... .+.+..   ..+.     ..+|+.++| +|+|+  |+.  ...|..+.+.+.+.|+++.
T Consensus        97 d~~~~~~~~~~~~~~~~~~-~~~d~~---~~~~-----~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A           97 DDNAAAIKWLNELHNPYLL-SISDAD---GTLG-----LDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             CCHHHHHHHHHHTTCCCSE-EEEETT---CHHH-----HHHTCCSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHcCCCCce-EEECCc---chHH-----HHcCCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            4677888888888876431 122211   1222     257899999 56665  542  3468888888887776643

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=82.97  E-value=0.48  Score=28.71  Aligned_cols=21  Identities=14%  Similarity=0.308  Sum_probs=16.2

Q ss_pred             hC-CCCcccEEEECCeeeeccCC
Q 030793          136 SA-NISGVPHFVLNGKHELSGGQ  157 (171)
Q Consensus       136 ~~-gv~gvPtfvv~~~~~i~G~~  157 (171)
                      .. |+.++|+++++|+ .+.|..
T Consensus        49 ~~~~~~~vP~l~~~g~-~i~g~~   70 (89)
T 2klx_A           49 RANGRNTFPQIFIGDY-HVGGCD   70 (89)
T ss_dssp             HHHSSCCSCEEEETTE-ECCSHH
T ss_pred             HhCCCCCcCEEEECCE-EEeChH
Confidence            35 8999999999998 365543

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=82.90  E-value=2.2  Score=27.26  Aligned_cols=52  Identities=23%  Similarity=0.393  Sum_probs=31.3

Q ss_pred             HHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCC
Q 030793          100 EFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQP  158 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~  158 (171)
                      ....++..+.|++-. ..+..+     ..+++.+... .|...+|.++|+|+ .|.|..+
T Consensus        35 ~~ak~~L~~~gi~y~~~di~~d-----~~~~~~l~~~-~g~~tvP~ifi~g~-~iGG~d~   87 (111)
T 3zyw_A           35 KQMVEILHKHNIQFSSFDIFSD-----EEVRQGLKAY-SSWPTYPQLYVSGE-LIGGLDI   87 (111)
T ss_dssp             HHHHHHHHHTTCCCEEEEGGGC-----HHHHHHHHHH-HTCCSSCEEEETTE-EEECHHH
T ss_pred             HHHHHHHHHcCCCeEEEECcCC-----HHHHHHHHHH-HCCCCCCEEEECCE-EEecHHH
Confidence            345566777788754 222222     3444444432 37789999999998 4666543

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.46  E-value=1.4  Score=28.25  Aligned_cols=53  Identities=9%  Similarity=-0.064  Sum_probs=32.2

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhh-------CCCCcccEEEECCeeeeccCCC
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYS-------ANISGVPHFVLNGKHELSGGQP  158 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~-------~gv~gvPtfvv~~~~~i~G~~~  158 (171)
                      ....+..+.|++-..-.+...    ...++.+...-       .|...+|.++|+|++ |.|..+
T Consensus        29 ~ak~~L~~~gi~y~~vdI~~~----~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~-iGG~d~   88 (111)
T 2ct6_A           29 DVVRFLEANKIEFEEVDITMS----EEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRY-CGDYDS   88 (111)
T ss_dssp             HHHHHHHHTTCCEEEEETTTC----HHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEE-EEEHHH
T ss_pred             HHHHHHHHcCCCEEEEECCCC----HHHHHHHHHHhcccccccCCCCCCCEEEECCEE-EeCHHH
Confidence            466777888887552222221    34444444321       288899999999984 666443

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=81.60  E-value=2.2  Score=28.55  Aligned_cols=53  Identities=23%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             HHHHHHHHHcCCchh-HhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCH
Q 030793          100 EFLVECARKVGVEGA-AEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPP  159 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~-~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~  159 (171)
                      .....+..+.|++-. ..+..+     ..+++.+.. ..|..++|.++|+|++ |.|..+.
T Consensus        54 ~~ak~~L~~~gv~y~~vdI~~d-----~~~~~~L~~-~~G~~tvP~VfI~G~~-iGG~d~l  107 (135)
T 2wci_A           54 AQAVQALAACGERFAYVDILQN-----PDIRAELPK-YANWPTFPQLWVDGEL-VGGCDIV  107 (135)
T ss_dssp             HHHHHHHHTTCSCCEEEEGGGC-----HHHHHHHHH-HHTCCSSCEEEETTEE-EESHHHH
T ss_pred             HHHHHHHHHcCCceEEEECCCC-----HHHHHHHHH-HHCCCCcCEEEECCEE-EEChHHH
Confidence            345556666677654 222222     234444433 2477899999999984 6665433

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=81.39  E-value=2.1  Score=28.06  Aligned_cols=63  Identities=17%  Similarity=0.181  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEE-EEC--Cee--eeccCC--CHHHHHHHHHHHh
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHF-VLN--GKH--ELSGGQ--PPEVYLRAFQVAA  170 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtf-vv~--~~~--~i~G~~--~~~~~~~~l~~~~  170 (171)
                      +.+.+.++.++.|++..  .+.+..   ..+     ...+|+.++|++ +|+  |+.  ...|..  +.+.+.+.|++..
T Consensus        72 ~~~~~~~~~~~~~~~~~--~~~d~~---~~~-----~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~  141 (152)
T 3gl3_A           72 KTGDAMKFLAQVPAEFT--VAFDPK---GQT-----PRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL  141 (152)
T ss_dssp             SHHHHHHHHHHSCCCSE--EEECTT---CHH-----HHHTTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCCCc--eeECCc---chh-----HHHcCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence            45667777777777643  222211   112     135899999995 553  542  345654  4578998888764

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=80.63  E-value=2  Score=28.03  Aligned_cols=36  Identities=14%  Similarity=0.103  Sum_probs=27.3

Q ss_pred             hhCCCCc--ccEEEE-C---C-eeeec--cCCCHHHHHHHHHHHh
Q 030793          135 YSANISG--VPHFVL-N---G-KHELS--GGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~g--vPtfvv-~---~-~~~i~--G~~~~~~~~~~l~~~~  170 (171)
                      ..+||.+  +||+++ +   | +|.+.  |..+.+.+.+.|++..
T Consensus        70 ~~~gi~~~~iPtl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l  114 (133)
T 2djk_A           70 GNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             TTTTCCSSSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHH
T ss_pred             HHcCCCcccCCEEEEEecCcCcccCCCCccccCHHHHHHHHHHHH
Confidence            4799999  999976 2   3 25554  9999999988887643

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=80.20  E-value=2.3  Score=33.21  Aligned_cols=36  Identities=22%  Similarity=0.248  Sum_probs=28.2

Q ss_pred             hhCCCCcccEEEE--CCee---eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH---ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~---~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.   ...|..+.+.+.+.|.+..
T Consensus        76 ~~~~v~~~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~  116 (382)
T 2r2j_A           76 QRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQK  116 (382)
T ss_dssp             HHTTCCEESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHH
T ss_pred             HhcCCCcCCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhc
Confidence            3699999999987  5663   2578889999998887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d1r4wa_	221	c.47.1.13 (A:) Mitochondrial class kappa glutathio	8e-10

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.4 bits (127), Expect = 8e-10
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 3   LRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTG--NT 60
           L+  P  L       G        +K     + I          + +  +  G      T
Sbjct: 36  LKLRPALLAGIMKDSGNQPPAMVPHKGQYILKEIPLLKQLFQVPMSVPKDFFGEHVKKGT 95

Query: 61  LDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGAAEFLDD 120
           +++ R L     +  +    ++ EL++  +++ + I + + ++  A K G+  A      
Sbjct: 96  VNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLL 155

Query: 121 PNSGLNEVHEELKK-----YSANISGVPHFVLN--GKHELSGGQ 157
                  V  +L++           G+P  V +  GK  +  G 
Sbjct: 156 NKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTYMLFGS 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	99.88
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	99.67
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	99.4
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	99.2
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.98
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.6
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.55
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.27
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.53
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.33
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.32
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.85
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.75
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	95.91
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	95.79
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.77
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	95.73
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	95.73
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	95.65
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	95.2
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	94.96
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	94.84
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	94.83
d1wjka_	100	Thioredoxin-like structure containing protein C330	94.81
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.66
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	94.42
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	93.98
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	93.92
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	93.82
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	93.74
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	93.5
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	92.38
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	92.18
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	91.71
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	90.39
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	90.34
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	90.3
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	89.7
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	89.45
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	89.24
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	88.22
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	86.92
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	86.15
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	85.98
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	85.69
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	85.47
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	83.15
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	82.86
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	82.42
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	82.0
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	81.97
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	80.64

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.5e-23  Score=151.72  Aligned_cols=164  Identities=15%  Similarity=0.205  Sum_probs=121.5

Q ss_pred             CeEEEeecccCCCCCCCCCCHHHHHHHhhCChHHHHHHHHHHHHHhcCCccccCCC------CCCcHHHHHHHHHHHhcC
Q 030793            1 MILRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGL------TGNTLDSHRLLYLAGQQG   74 (171)
Q Consensus         1 ~~v~~~P~~L~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~~------~~~s~~a~r~~~~a~~~g   74 (171)
                      ++|+||||+|+|.++.+|.........    +..+...+..+++...++++..+..      +.++..++++..++...+
T Consensus        34 v~i~~rP~~L~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T d1r4wa_          34 IKLKLRPALLAGIMKDSGNQPPAMVPH----KGQYILKEIPLLKQLFQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQ  109 (221)
T ss_dssp             EEEEEEECCHHHHHHHTTCCCTTSSHH----HHHHHHHHHHHHHHHHTCCCCCCSSTTTHHHHHCSHHHHHHHHHHHHHC
T ss_pred             CEEEEEEEeccccchhccccchhhhhh----hhhhhHHHHHHHHHhhhhhhccccccccccccccchhHHHHHHHHHHhc
Confidence            479999999999888777543322221    5567888889999999988876532      345666666655555544


Q ss_pred             cchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCchh--HhhhcC--CCCChHHHHHHHHH-hhCCCCcccEEEECC
Q 030793           75 LDKQHNLAEELFLGYFTQGKYIGDKEFLVECARKVGVEGA--AEFLDD--PNSGLNEVHEELKK-YSANISGVPHFVLNG  149 (171)
Q Consensus        75 ~~~~~~~~~~l~~a~~~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~--~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~  149 (171)
                      .+...++++++|+++|.+|.||+|.++|.+++.++|++.+  .+.+..  ++..++.++++.+. .+.||+||||||||+
T Consensus       110 ~~~~~~~~~~l~~a~~~~g~di~d~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~k~~l~~~~~~A~~~GvfGvPtfvi~~  189 (221)
T d1r4wa_         110 PEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHV  189 (221)
T ss_dssp             GGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHTTCCSSCEEEEEE
T ss_pred             cchHHHHHHHHHHHHhccCCcccchHHHHHHHHHhCccccccccccccccCHHHHHHHHHHHHHHHHCCCeECCEEEEcc
Confidence            4489999999999999999999999999999999999986  333322  12344555555443 789999999999974


Q ss_pred             --e-eeeccCCCHHHHHHHHHH
Q 030793          150 --K-HELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       150 --~-~~i~G~~~~~~~~~~l~~  168 (171)
                        + ..+.|....+.+++.|.+
T Consensus       190 ~~~~e~f~G~Drl~~l~~~L~~  211 (221)
T d1r4wa_         190 DGKTYMLFGSDRMELLAYLLGE  211 (221)
T ss_dssp             TTEEEEEESTTCHHHHHHHHTC
T ss_pred             CCCcceeecccCHHHHHHHHhc
Confidence              2 356788888888887754

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=99.67  E-value=2e-16  Score=111.83  Aligned_cols=146  Identities=12%  Similarity=0.073  Sum_probs=113.9

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHhcCCcccc----CCC--CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCC
Q 030793           21 KKDFYENKFGSQNQGIIARMTEVFRGLGLEYNM----SGL--TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK   94 (171)
Q Consensus        21 ~~~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~----~~~--~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~   94 (171)
                      ..+|....|+ .|+.+.+.+..+-+.++-...+    .++  ...+..+.+++.++...+  ....++..++..++..+.
T Consensus        22 Ivef~d~~Cp-~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   98 (181)
T d1beda_          22 VSEFFSFYCP-HCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALE--VEDKMVPVMFNRIHTLRK   98 (181)
T ss_dssp             EEEEECTTCH-HHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSCC
T ss_pred             EEEEECCCCc-cchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhc--chhhHHHHHHHHHHHhcc
Confidence            4466666664 8988888899988887644332    223  233455556665556667  788999999999999999


Q ss_pred             CCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeee--ccCCCHHHHHHHHHHH
Q 030793           95 YIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHEL--SGGQPPEVYLRAFQVA  169 (171)
Q Consensus        95 ~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i--~G~~~~~~~~~~l~~~  169 (171)
                      ++.+.+.|..++...|+|.+  .+++++ .++.+.++++.+. ...||+|||||+|||+|.+  .|..+++.|.++|+.+
T Consensus        99 ~~~~~~~l~~~~~~~gvd~~~~~~~~~~-~~~~~~v~~~~~~~~~~gi~gTPt~~InGk~~v~~~~~~~~~~l~~~i~~L  177 (181)
T d1beda_          99 PPKDEQELRQIFLDEGIDAAKFDAAYNG-FAVDSMVRRFDKQFQDSGLTGVPAVVVNNRYLVQGQSVKSLDEYFDLVNYL  177 (181)
T ss_dssp             CCCSHHHHHHHHHTTTCCHHHHHHHHTS-HHHHHHHHHHHHHHHHHTCCSSSEEEETTTEEECGGGCCSHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCCHHHHHHHHhC-hHHHHHHHHHHHHHHHhCCccccEEEECCEEeeCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999987  678877 3566677776654 6899999999999999866  6788999999999876


Q ss_pred             h
Q 030793          170 A  170 (171)
Q Consensus       170 ~  170 (171)
                      .
T Consensus       178 ~  178 (181)
T d1beda_         178 L  178 (181)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=5.6e-13  Score=94.49  Aligned_cols=130  Identities=17%  Similarity=0.171  Sum_probs=89.3

Q ss_pred             CHHHHHHHhhCChHHHHHHHH---HHHHHhcCC--ccccCCC--CC--CcHHHHHHHHHHHhcCcchHHHHHHHHHHHHh
Q 030793           20 NKKDFYENKFGSQNQGIIARM---TEVFRGLGL--EYNMSGL--TG--NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYF   90 (171)
Q Consensus        20 ~~~~~~~~~~g~~~~~~~~~~---~~~a~~~g~--~~~~~~~--~~--~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~   90 (171)
                      ...+|+...|+ +|+.+.+.+   .++.+..+.  .+.+..+  ..  .+..+.+++.++...+  ....++..++...+
T Consensus        21 ~VvEffdy~Cp-~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~   97 (188)
T d1fvka_          21 QVLEFFSFFCP-HCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG--VEDKVTVPLFEGVQ   97 (188)
T ss_dssp             SEEEEECTTCH-HHHHHHHTTCHHHHHHTTSCTTCCEEEEECSSSSHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCh-hhHHHHHHHHHHHHHhhccCCceEEEEEecCcCCChhHHHHHHHHHHHHHHh--hhhhHHHHHHHHhh
Confidence            34566666675 788877655   444444433  3333222  22  2334445555555667  67788888777765


Q ss_pred             hcCCCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeec
Q 030793           91 TQGKYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELS  154 (171)
Q Consensus        91 ~~g~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~  154 (171)
                      .. .+..+.+.+..++...|+|.+  ..+++++ ++.+.+.++.+. .+.||+|||||+|||||.+.
T Consensus        98 ~~-~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~-~~~~~v~~~~~~a~~~gI~gTPt~vInGky~i~  162 (188)
T d1fvka_          98 KT-QTIRSASDIRDVFINAGIKGEEYDAAWNSF-VVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN  162 (188)
T ss_dssp             TS-CCCCSHHHHHHHHHHTTCCHHHHHHHHHCH-HHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             hh-cccchHHHHHHHHHHccCCHHHHHhhhccH-HHHHHHHHHHHHHHHcCCccccEEEECCEEEec
Confidence            54 466778899999999999987  5788884 566777776654 68999999999999999885

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2e-11  Score=87.49  Aligned_cols=60  Identities=20%  Similarity=0.273  Sum_probs=51.3

Q ss_pred             CCCCCHHHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeec
Q 030793           94 KYIGDKEFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELS  154 (171)
Q Consensus        94 ~~i~~~~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~  154 (171)
                      +.|++.+.|.+++.++|||.+  ..+++|+ .....++++.+. .++||+|||||||||+|.|+
T Consensus         1 q~i~s~~~i~~~~~~~Gld~~~f~~~~~s~-~~~~~v~~~~~~a~~~gi~GtPtfiVnGky~v~   63 (195)
T d1un2a_           1 QTIRSASDIRDVFINAGIKGEEYDAAWNSF-VVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN   63 (195)
T ss_dssp             CCCSSHHHHHHHHHHHTCCHHHHHHHHTSH-HHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             CCCCCHHHHHHHHHHcCCCHHHHHHHHcCH-HHHHHHHHHHHHHHHhCCCcCCEEEECCeeeec
Confidence            468899999999999999998  6788884 567777776664 78999999999999999885

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.98  E-value=8.7e-10  Score=76.46  Aligned_cols=135  Identities=10%  Similarity=0.004  Sum_probs=79.9

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCC--cccc--CC--CCC-CcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCC
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGL--EYNM--SG--LTG-NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKY   95 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~--~~~~--~~--~~~-~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~   95 (171)
                      +|....|+ .|..+.+.+..+.+.++-  .+.+  .+  +.. ....+..+..++...+++..+.+++.++...-.... 
T Consensus        30 ef~d~~Cp-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  107 (172)
T d1z6ma1          30 EFINVRCP-YCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDEWGN-  107 (172)
T ss_dssp             EEECTTCH-HHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHHHTT-
T ss_pred             EEECCCCH-hHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhccccch-
Confidence            44455554 888888888887766532  2222  12  222 333333322222333444666777777765433222 


Q ss_pred             CCCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHH
Q 030793           96 IGDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQV  168 (171)
Q Consensus        96 i~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~  168 (171)
                       .+.   .+++..++++   .++.+ ......++++.+. .++||+|||||+|||+ .+.|..+.++|.++|++
T Consensus       108 -~~~---~~~~~~~~~~---~~~~~-~~~~~~i~~~~~~a~~~gI~gTPt~~Ing~-~~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         108 -LTL---EEVATYAEKN---LGLKE-QKDATLVSAVIAEANAAHIQFVPTIIIGEY-IFDESVTEEELRGYIEK  172 (172)
T ss_dssp             -SCH---HHHHHHHHHT---SCCCC-CCCHHHHHHHHHHHHHHTCCSSCEEEETTE-EECTTCCHHHHHHHHTC
T ss_pred             -HHH---HHHHHHHHhh---hhhhh-HHHHHHHHHHHHHHHHcCCCcCCEEEECCE-EecCCCCHHHHHHHHcC
Confidence             222   3333333333   23444 3466677776664 6799999999999998 58899999999999863

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=2.4e-08  Score=68.48  Aligned_cols=43  Identities=26%  Similarity=0.432  Sum_probs=35.1

Q ss_pred             HHHHHHHH-hhCCCCcccEEEE-CCeeeeccCCCHHHHHHHHHHHh
Q 030793          127 EVHEELKK-YSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       127 ~v~~~~~~-~~~gv~gvPtfvv-~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+.++.+. .++||.||||||+ ||+ .+.|+.|++.|.++|+++.
T Consensus       106 ~i~~~~~la~~lgv~GTPt~~~~nG~-~v~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         106 DIADHYALGVQLGVSGTPAVVLSNGT-LVPGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CHHHHHHHHHHHTCCSSSEEECTTSC-EEESCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCcCCCEEEEeCCe-EecCCCCHHHHHHHHHHHH
Confidence            35555543 6899999999888 666 6899999999999999865

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=1.5e-08  Score=70.47  Aligned_cols=117  Identities=6%  Similarity=-0.064  Sum_probs=72.1

Q ss_pred             HHHHHhhCChHHHHHHHHHHHHHhcCCccccCC---CCCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHhhcCCCCCCH
Q 030793           23 DFYENKFGSQNQGIIARMTEVFRGLGLEYNMSG---LTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDK   99 (171)
Q Consensus        23 ~~~~~~~g~~~~~~~~~~~~~a~~~g~~~~~~~---~~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~~~g~~i~~~   99 (171)
                      .|.+..|+ .|+.+...++.+.+...+.+.+.+   +.++|..+++.+.++.+.+  +.+.+++                
T Consensus        42 vF~D~~CP-~C~~~~~~l~~l~~~~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~--~~~~~~~----------------  102 (169)
T d1v58a1          42 VFADPFCP-YCKQFWQQARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPA--KTWQQYE----------------  102 (169)
T ss_dssp             EEECTTCH-HHHHHHHHHHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHH--HHHHHHH----------------
T ss_pred             EEECCCCc-chHHHHHHHHHHHhccceeEEEEecccCCcchHHHHHHHHhhhCHH--HHHHHHH----------------
Confidence            34455554 899999999998887777766644   3467777777766654433  3333322                


Q ss_pred             HHHHHHHHHcCCchh--HhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECC---ee-eeccCCCHHHHHHHHH
Q 030793          100 EFLVECARKVGVEGA--AEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNG---KH-ELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~--~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~---~~-~i~G~~~~~~~~~~l~  167 (171)
                              ..|.+..  .....+ ....+.+.++... ..+||.||||||+++   +. .+.|+.+.+.|.++|.
T Consensus       103 --------~~~~~~~~~~~~~~~-~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~il~  168 (169)
T d1v58a1         103 --------ASGGKLKLNVPANVS-TEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMG  168 (169)
T ss_dssp             --------HTTTCCCCCCCSSCC-HHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHTT
T ss_pred             --------Hhhhcccccccchhh-HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhc
Confidence                    2222211  111112 1233456555554 679999999999954   22 4789999999888763

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.27  E-value=2.8e-07  Score=62.57  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=37.3

Q ss_pred             ChHHHHHHHHH-hhCCCCcccEEEE-CCeeeeccCCCHHHHHHHHHHH
Q 030793          124 GLNEVHEELKK-YSANISGVPHFVL-NGKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       124 ~~~~v~~~~~~-~~~gv~gvPtfvv-~~~~~i~G~~~~~~~~~~l~~~  169 (171)
                      ....++++.+. ..+||+|||||++ ||+ .+.|+.+.+.|+++|+++
T Consensus       103 ~~~~i~~~~~la~~lGv~GTPt~~~~nG~-~i~G~~~~~~l~~~l~~~  149 (150)
T d1t3ba1         103 TPNIVKKHYELGIQFGVRGTPSIVTSTGE-LIGGYLKPADLLRALEET  149 (150)
T ss_dssp             CSSHHHHHHHHHHHHTCCSSCEEECTTSC-CCCSCCCHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHhcCcCCCCEEEEcCCc-EecCCCCHHHHHHHHHhh
Confidence            34567777664 7899999999888 666 689999999999999875

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.53  E-value=4e-05  Score=46.38  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=32.9

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .++||.|+||++++|+....|..+.+.|.+.|+++.+
T Consensus        49 ~~~~V~~~Pt~~~~~~~~~~G~~~~~~l~~~i~~~l~   85 (85)
T d1nhoa_          49 IEYGLMAVPAIAINGVVRFVGAPSREELFEAINDEME   85 (85)
T ss_dssp             GGTCSSCSSEEEETTTEEEECSSCCHHHHHHHHHHCC
T ss_pred             HhcCceEeCEEEECCcEEEEcCCCHHHHHHHHHHhhC
Confidence            4799999999999988777899999999999998753

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.33  E-value=9e-05  Score=45.89  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=28.5

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQ  167 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~  167 (171)
                      .++||.|+||+++||+....|..+.++|.+.|+
T Consensus        62 ~~~~I~~vPt~~~ng~~~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          62 TERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             HHTTCCSSSEEEETTEEEEESCCCHHHHHHHHC
T ss_pred             hhcccccccEEEECCEEEEecCCCHHHHHHHHh
Confidence            368999999999999976689999999888764

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.32  E-value=9.8e-05  Score=44.38  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=30.7

Q ss_pred             hhCCCCcccEEEECCeeeeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVLNGKHELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+||+++++.-.+.|..+.+.|.+.|++.
T Consensus        50 ~~~~V~~~Pt~~i~~~g~~~G~~~~~~l~~~i~~~   84 (85)
T d1fo5a_          50 MEYGIMAVPTIVINGDVEFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             TSTTTCCSSEEEETTEEECCSSSSSHHHHHHHHHH
T ss_pred             ccCCceEeeEEEEECCcEEECCCCHHHHHHHHHhc
Confidence            47999999999998776778999999999999875

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.85  E-value=0.00091  Score=41.60  Aligned_cols=37  Identities=27%  Similarity=0.525  Sum_probs=30.4

Q ss_pred             hhCCCCcccEEEEC--Ce--eeeccCCCHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVLN--GK--HELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv~--~~--~~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .++||.|+||+++.  |+  ..+.|..+.+.|.+.|.++.+
T Consensus        67 ~~~~V~~vPTi~i~~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          67 DQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             HHTTCCSSCEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             cccccccceEEEEEeCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            46999999999874  54  346799999999999998864

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.75  E-value=0.00067  Score=40.09  Aligned_cols=57  Identities=14%  Similarity=0.366  Sum_probs=39.2

Q ss_pred             HHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCC-CHHHHHHHH
Q 030793          100 EFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQ-PPEVYLRAF  166 (171)
Q Consensus       100 ~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~-~~~~~~~~l  166 (171)
                      +...+++++.|++.+-.-+.+   . .++      .++||-+||.++|||+..++|.. +.+++.+.|
T Consensus        19 ~~v~~a~~e~gi~a~v~kv~d---~-~ei------~~ygVmstPalvIdg~vv~~G~vPs~~ei~~~L   76 (77)
T d1iloa_          19 KNAREAVKELGIDAEFEKIKE---M-DQI------LEAGLTALPGLAVDGELKIMGRVASKEEIKKIL   76 (77)
T ss_dssp             HHHHHHHHHTTCCEEEEEECS---H-HHH------HHHTCSSSSCEEETTEEEECSSCCCHHHHHHHC
T ss_pred             HHHHHHHHHcCCceEEEEeCC---H-HHH------HHcCCcCCCEEEECCEEEEEecCCCHHHHHHHh
Confidence            456667788899865212222   1 111      35999999999999998889965 677777654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=95.91  E-value=0.0026  Score=39.28  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=29.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .++||.|+|||++  +|+.  .+.|..+.+.|.+.|+++.+
T Consensus        65 ~~~~V~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~L~  105 (105)
T d1nw2a_          65 SQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             HHTTCCBSSEEEEEETTEEEEEEESCCCHHHHHHHTTTTCC
T ss_pred             HHCCcceeeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhC
Confidence            3699999999987  5652  46799999999998887653

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=95.79  E-value=0.0049  Score=38.12  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .+++|.|+||+++  +|+.  .+.|..+.+.|.+.|++..+
T Consensus        67 ~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          67 SEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             HHHTCCSSCEEEEESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             HHhcccceEEEEEEECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            3689999999987  4552  35799999999999998753

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.77  E-value=0.0066  Score=37.23  Aligned_cols=35  Identities=20%  Similarity=0.410  Sum_probs=28.6

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+|||++  +|+.  .+.|..+.+.|.+.|++.
T Consensus        65 ~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          65 TQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred             hhcceeeeeEEEEEEcCeEEEEEeCCCCHHHHHHHHHHh
Confidence            3699999999987  4652  467999999999999875

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=95.73  E-value=0.0089  Score=36.90  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=30.0

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHhC
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAAN  171 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~~  171 (171)
                      .+++|.|+||+++  +|+.  .+.|..+.+.|.+.|++..+
T Consensus        68 ~~~~I~~~Pt~~~~~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          68 KKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             HHhcccCCCEEEEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            3689999999987  5652  35799999999999988653

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.73  E-value=0.013  Score=37.20  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=29.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.++|||++  +|+.  .+.|..+.+.+.+.|+++.
T Consensus        79 ~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          79 DRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             HTTTCCSSSEEEEESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             HhcCcCcceEEEEEEcCeEEEEeeCCCCHHHHHHHHHHHh
Confidence            5799999999987  4552  4689999999999999875

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0094  Score=36.76  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=29.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+.|.+.|++.+
T Consensus        68 ~~~~v~~~PT~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHhCCCcEEEEEEEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            3699999999987  5653  3679999999999998754

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.019  Score=37.04  Aligned_cols=36  Identities=14%  Similarity=0.149  Sum_probs=30.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+||+++  +|+.  .+.|..+.++|.+.|+++.
T Consensus        85 ~~~~V~~~PT~~~~~~G~~v~~~~G~~~~~~l~~~i~~ll  124 (132)
T d2hfda1          85 DRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_dssp             HHHTCCSCCEEEEEETTEEEEEECCCSCHHHHHHHHHHHH
T ss_pred             HhhccCcceeEEEEEcCcEeeeecCCCCHHHHHHHHHHHh
Confidence            5799999999987  6763  4689999999999998764

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.018  Score=35.28  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=26.4

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .++||.|+|||++  +|+.  .+.|. +.+.+.+.|+++
T Consensus        67 ~~~~V~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          67 SECEVKCMPTFQFFKKGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             HHTTCCBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             HHcCceEEEEEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence            3689999999987  5652  35686 678899988875

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.017  Score=35.97  Aligned_cols=34  Identities=18%  Similarity=0.413  Sum_probs=26.8

Q ss_pred             hhCCCCcccEEEE-C--Cee----eeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL-N--GKH----ELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv-~--~~~----~i~G~~~~~~~~~~l~~  168 (171)
                      .++||.|+||+++ +  |+.    .+.|..+.+.|.+.|++
T Consensus        76 ~~~~v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          76 KHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             HHTTCCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             hhhehhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            4799999999986 2  442    35799999999998874

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.0022  Score=44.55  Aligned_cols=69  Identities=14%  Similarity=0.067  Sum_probs=49.8

Q ss_pred             CHHHHHHHhhCChHHHHHHHH---HHHHHhcCCcccc--CC--C--CCCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHh
Q 030793           20 NKKDFYENKFGSQNQGIIARM---TEVFRGLGLEYNM--SG--L--TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYF   90 (171)
Q Consensus        20 ~~~~~~~~~~g~~~~~~~~~~---~~~a~~~g~~~~~--~~--~--~~~s~~a~r~~~~a~~~g~~~~~~~~~~l~~a~~   90 (171)
                      ...+++.+.|+ +|..+.+.+   .+|.+.++-..++  ..  +  ...+..+.+++.+|..+|  +.++++++||++++
T Consensus       116 ~VvEffsy~Cp-~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~A~a~~aA~~~g--~~~~~h~alF~aIh  192 (195)
T d1un2a_         116 QVLEFFSFFCP-HCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG--VEDKVTVPLFEGVQ  192 (195)
T ss_dssp             SEEEEECTTCH-HHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSSSHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred             eEEEEEecCCc-cccccchhhhHHHHHHhhcCCCcEEEEEecCcCCCcchHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence            45567766665 888887755   4777776644333  22  2  234678899999999999  89999999999986


Q ss_pred             h
Q 030793           91 T   91 (171)
Q Consensus        91 ~   91 (171)
                      .
T Consensus       193 k  193 (195)
T d1un2a_         193 K  193 (195)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.81  E-value=0.011  Score=36.23  Aligned_cols=34  Identities=15%  Similarity=0.229  Sum_probs=29.2

Q ss_pred             hCCCCcccEEEECCeeeeccCCCHHHHHHHHHHHh
Q 030793          136 SANISGVPHFVLNGKHELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       136 ~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~l~~~~  170 (171)
                      ++|+. +|+++|+|+..+.|..+.+.|.+.|+++.
T Consensus        62 ~y~~~-VPvl~idg~~~~~g~~d~~~L~~~L~~l~   95 (100)
T d1wjka_          62 RYKFD-IPVFHLNGQFLMMHRVNTSKLEKQLRKLS   95 (100)
T ss_dssp             HSSSS-CSEEEESSSEEEESSCCHHHHHHHHHSSS
T ss_pred             Hhccc-CCceeecCceEEeCCCCHHHHHHHHHHHh
Confidence            57776 99999999888889999999999998653

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.66  E-value=0.019  Score=35.78  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=27.1

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|+ ..+.+.+.|+++.
T Consensus        73 ~~~~V~~~Pt~~~~k~G~~v~~~~G~-~~~~l~e~i~~~~  111 (112)
T d1f9ma_          73 KELGIRVVPTFKILKENSVVGEVTGA-KYDKLLEAIQAAR  111 (112)
T ss_dssp             HHHCCSSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             hheeeccCCEEEEEECCEEEEEEeCC-CHHHHHHHHHHcc
Confidence            3689999999987  5663  36787 5678889998875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.035  Score=34.22  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=27.2

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.++|||++  +|+-  .+.|+ +.+.|.+.|++..
T Consensus        68 ~~~~v~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~l  106 (107)
T d1gh2a_          68 ATNNISATPTFQFFRNKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             hhcCceeceEEEEEECCEEEEEEeCC-CHHHHHHHHHHhh
Confidence            3689999999987  5652  35785 7889999988764

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.98  E-value=0.042  Score=34.12  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=26.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|. +.+.|.+.|++..
T Consensus        75 ~~~~V~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          75 SDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             cccceeeeEEEEEEECCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            3699999999986  5652  35675 6789999888753

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=93.92  E-value=0.036  Score=34.37  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=26.5

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|. +.+.+.+.|++..
T Consensus        72 ~~~~v~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~i~k~~  110 (112)
T d1ep7a_          72 EAAGITAMPTFHVYKDGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             HHHTCCBSSEEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             ccccccCCCEEEEEECCEEEEEEeCc-CHHHHHHHHHHHh
Confidence            3689999999987  4652  35675 7889999988753

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.82  E-value=0.038  Score=34.41  Aligned_cols=35  Identities=17%  Similarity=0.413  Sum_probs=26.3

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~~  170 (171)
                      .++||.|+|||++  +|+.  .+.|+ ..+.+.+.|+++.
T Consensus        73 ~~~~V~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~l~~~i  111 (113)
T d1r26a_          73 SKCRVLQLPTFIIARSGKMLGHVIGA-NPGMLRQKLRDII  111 (113)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             HHccccCCCEEEEEECCEEEEEEeCC-CHHHHHHHHHHHh
Confidence            3699999999987  5653  35686 4678888888765

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=93.74  E-value=0.14  Score=28.96  Aligned_cols=57  Identities=14%  Similarity=0.163  Sum_probs=35.8

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHHHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYLRA  165 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~~~  165 (171)
                      ...+++.+.|++-..-.++..    .+..+.+  ...|..++|+++++|+ .|.|.. .+.+.++
T Consensus        16 ~ak~~L~~~~i~~~~~~i~~~----~~~~~~~--~~~g~~tvP~i~i~g~-~igGf~-~d~l~~L   72 (74)
T d1r7ha_          16 ATKKALDRAGLAYNTVDISLD----DEARDYV--MALGYVQAPVVEVDGE-HWSGFR-PERIKQL   72 (74)
T ss_dssp             HHHHHHHHTTCCCEEEETTTC----HHHHHHH--HHTTCBCCCEEEETTE-EEESCC-HHHHHHH
T ss_pred             HHHHHHHHcCCceEEEEccCC----HHHHHHH--HHhCCCCcCEEEECCE-EEeCCC-HhHHHHh
Confidence            456677888987652223331    2333322  2468999999999998 477764 5666553

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.50  E-value=0.043  Score=33.31  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=25.0

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~  168 (171)
                      .++||.|+||+++  +|+.  .+.|. +.+.+.+.|++
T Consensus        65 ~~~~V~~~Pt~i~~k~G~~v~~~~G~-~~~~l~~~i~k  101 (103)
T d1syra_          65 EKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEK  101 (103)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESC-CHHHHHHHHHT
T ss_pred             eeeeeecceEEEEEECCEEEEEEeCc-CHHHHHHHHHh
Confidence            3689999999987  6762  35675 67888888875

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.38  E-value=0.058  Score=33.43  Aligned_cols=32  Identities=19%  Similarity=0.185  Sum_probs=25.0

Q ss_pred             hhCCCCcccEEEE--CCee--eeccCCCHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKH--ELSGGQPPEVYLRAF  166 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l  166 (171)
                      .++||.|+||+++  +|+.  .+.|..+.+++.+.|
T Consensus        78 ~~~~V~~~PTli~~~~gk~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          78 SRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             HHHTCCSSCEEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred             cccccccccEEEEEECCEEEEEEcCCCCHHHHHHHH
Confidence            4689999999986  5653  357888998888765

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=92.18  E-value=0.038  Score=34.27  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=25.2

Q ss_pred             hCCCCcccEEEE--CCee--eeccCCCHHHHHHHHHHH
Q 030793          136 SANISGVPHFVL--NGKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      ++||.|+|||++  +|+.  .+.|. +.+.|.+.|++-
T Consensus        74 ~~~I~~~Pt~~~~k~G~~v~~~~G~-~~~~l~~~i~k~  110 (113)
T d1ti3a_          74 EWNVEAMPTFIFLKDGKLVDKTVGA-DKDGLPTLVAKH  110 (113)
T ss_dssp             HHHCSSTTEEEEEETTEEEEEEECC-CTTHHHHHHHHH
T ss_pred             cCeecccceEEEEECCEEEEEEcCC-CHHHHHHHHHHH
Confidence            578999999987  5652  35674 678899988864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.71  E-value=0.13  Score=31.46  Aligned_cols=33  Identities=30%  Similarity=0.528  Sum_probs=23.8

Q ss_pred             hhCCCCcccEEEE--CCe--eeeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK--HELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~--~~i~G~~~~~~~~~~l~~  168 (171)
                      .++||.++|||++  +|+  ..+.|.. .+.+.+.|++
T Consensus        73 ~~~~V~~~Pt~~~~~~G~~v~~~~G~~-~~~l~~~I~~  109 (111)
T d1xwaa_          73 MEYNISSMPTFVFLKNGVKVEEFAGAN-AKRLEDVIKA  109 (111)
T ss_dssp             HHTTCCSSSEEEEEETTEEEEEEESCC-HHHHHHHHHH
T ss_pred             hcCCCccccEEEEEECCEEEEEEeCCC-HHHHHHHHHh
Confidence            3699999999987  564  2356764 5678887764

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=90.39  E-value=0.17  Score=32.30  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=24.2

Q ss_pred             hCCCCcccEEEE-C--Ce--eeeccCCCHHHHHHHHHHH
Q 030793          136 SANISGVPHFVL-N--GK--HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       136 ~~gv~gvPtfvv-~--~~--~~i~G~~~~~~~~~~l~~~  169 (171)
                      .+|+.|+||+++ +  |+  +...|..+.+.+.+.|++.
T Consensus       101 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~  139 (144)
T d1knga_         101 EWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQ  139 (144)
T ss_dssp             HTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred             hcCccccceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            589999997765 3  44  2457888888877766553

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.34  E-value=0.21  Score=31.15  Aligned_cols=36  Identities=6%  Similarity=0.063  Sum_probs=28.2

Q ss_pred             hhCCCCcccEEEE--CCe-eeeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGK-HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~-~~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+++|.|+||+++  +|+ ....|..+.+.|.+-|.++.
T Consensus        83 ~~~~I~~yPTi~~f~~g~~~~y~G~r~~~~l~~fi~~~l  121 (124)
T d1a8ya1          83 KKLGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVL  121 (124)
T ss_dssp             HTTTCCSTTCEEEEESSSEEECCSCCSHHHHHHHHHHHH
T ss_pred             hccccccCCcEEEeccCccEEeeCCCCHHHHHHHHHHhc
Confidence            4699999999976  454 23479999999999887764

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=0.27  Score=27.92  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=33.9

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccCCCHHHHH
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGGQPPEVYL  163 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~~~~~~~~  163 (171)
                      .+.+++.+.|++-..-.++..    .+..+.+  ...|..++|.++++|+ .+.|.. ++.+.
T Consensus        16 ~ak~~L~~~~i~y~~~~i~~~----~~~~~~~--~~~g~~tvP~i~i~~~-~i~Gf~-~d~i~   70 (76)
T d1h75a_          16 ATKRAMENRGFDFEMINVDRV----PEAAEAL--RAQGFRQLPVVIAGDL-SWSGFR-PDMIN   70 (76)
T ss_dssp             HHHHHHHHTTCCCEEEETTTC----HHHHHHH--HHTTCCSSCEEEETTE-EEESCC-HHHHG
T ss_pred             HHHHHHHhcCceeEEEeecCC----HHHHHHH--HhcCCCCCCEEEECCE-EEECCC-HHHHH
Confidence            456677888987652223221    2333333  2478999999999998 477754 45443

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=89.70  E-value=0.15  Score=32.18  Aligned_cols=34  Identities=18%  Similarity=0.366  Sum_probs=23.8

Q ss_pred             hCCCCcccEEE-EC--Cee--eeccCCCHHHHHHHHHHH
Q 030793          136 SANISGVPHFV-LN--GKH--ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       136 ~~gv~gvPtfv-v~--~~~--~i~G~~~~~~~~~~l~~~  169 (171)
                      .+|+.|+|+.+ |+  |+.  ...|..+.+.+.+.|+++
T Consensus        89 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          89 DLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL  127 (136)
T ss_dssp             HHTCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHH
T ss_pred             hcccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHH
Confidence            47899999665 54  542  357888888777766654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.45  E-value=0.28  Score=30.73  Aligned_cols=34  Identities=12%  Similarity=0.284  Sum_probs=26.9

Q ss_pred             hCCCCcccEEEE---CCee-eeccCCCHHHHHHHHHHH
Q 030793          136 SANISGVPHFVL---NGKH-ELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       136 ~~gv~gvPtfvv---~~~~-~i~G~~~~~~~~~~l~~~  169 (171)
                      .+|+.|+|++++   +|+. .+.|..+.+++.+.|+++
T Consensus        96 ~~~v~~~P~~~iiD~~G~i~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          96 NFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             HTTCCSSSEEEEECTTCCEEEEESCCCHHHHHHHHHHH
T ss_pred             hcCCCccCeEEEECCCCeEEEEECCCCHHHHHHHHHhh
Confidence            589999999987   3542 246888999999999875

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.24  E-value=0.3  Score=30.11  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=27.5

Q ss_pred             hhCCCCcccEEEE--CCee----eeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL--NGKH----ELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~----~i~G~~~~~~~~~~l~~~~  170 (171)
                      .+++|.|+||+++  +|+.    ...|..+.+.|.+.|++..
T Consensus        76 ~~~~v~~~Pti~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          76 MEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             HHTTCCSSSEEEEEETTCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             HHhccccCCeEEEEECCEEeeeEEecCCCCHHHHHHHHHHhh
Confidence            3689999999987  5532    2458889999999888754

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=88.22  E-value=0.31  Score=30.81  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=26.9

Q ss_pred             hCCCCcccEEEE-C--Ce--eeeccCCCHHHHHHHHHHH
Q 030793          136 SANISGVPHFVL-N--GK--HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus       136 ~~gv~gvPtfvv-~--~~--~~i~G~~~~~~~~~~l~~~  169 (171)
                      .+|+.|+|++++ +  |+  +...|..+.+.+.+.|++.
T Consensus       101 ~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1         101 SLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             HcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence            689999999987 3  54  2457999999999988754

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=86.92  E-value=0.36  Score=30.64  Aligned_cols=62  Identities=16%  Similarity=0.241  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE---CCe--eeeccCCCHHHHHHHHHHH
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL---NGK--HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv---~~~--~~i~G~~~~~~~~~~l~~~  169 (171)
                      +.+.+.+.+++.|++-.  .+.+.+   ..+.     ..+|+.++|++++   +|+  +...|..+.+.+.+.|+++
T Consensus        77 ~~~~~~~~~~~~~~~~p--~~~D~~---~~~~-----~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l  143 (143)
T d2b5xa1          77 DPGKIKETAAEHDITQP--IFVDSD---HALT-----DAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV  143 (143)
T ss_dssp             SHHHHHHHHHHTTCCSC--EEECSS---CHHH-----HHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred             chhhhhhHHHhhccCcc--ccccCc---cchH-----HHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence            45678888888888753  222211   1222     2589999998665   354  2446888999999998864

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.15  E-value=0.29  Score=30.06  Aligned_cols=33  Identities=18%  Similarity=0.394  Sum_probs=24.6

Q ss_pred             hCCCCcccEEEE--CCee----eeccCCCHHHHHHHHHH
Q 030793          136 SANISGVPHFVL--NGKH----ELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~~----~i~G~~~~~~~~~~l~~  168 (171)
                      +++|.|+||+++  +|+.    ...|..+.+.|.+.|++
T Consensus        76 ~~~i~~~Pt~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~  114 (120)
T d1meka_          76 QYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKK  114 (120)
T ss_dssp             HHTCCSSSEEEEEESSCSSSCEECCCCSSHHHHHHHHHT
T ss_pred             HhCCccCCeEEEEECCeEeeeEEecCCCCHHHHHHHHHH
Confidence            578999999865  4531    24677888899888875

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.98  E-value=0.6  Score=27.52  Aligned_cols=59  Identities=7%  Similarity=-0.024  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHH-hhCCCCcccEEEECCeeeeccCCCHHHH
Q 030793           99 KEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKK-YSANISGVPHFVLNGKHELSGGQPPEVY  162 (171)
Q Consensus        99 ~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~-~~~gv~gvPtfvv~~~~~i~G~~~~~~~  162 (171)
                      -..+..+....|++-..-.++..    ...++.+.. ...+..-+|-++|+|+| |.|+.+..++
T Consensus        21 ~~r~~~lL~~~~I~y~~iDi~~d----~~~~~~~~~~~g~~~~t~Pqifv~~~~-iGg~del~~~   80 (93)
T d1t1va_          21 QSEVTRILDGKRIQYQLVDISQD----NALRDEMRTLAGNPKATPPQIVNGNHY-CGDYELFVEA   80 (93)
T ss_dssp             HHHHHHHHHHTTCCCEEEETTSC----HHHHHHHHHHTTCTTCCSCEEEETTEE-EEEHHHHHHH
T ss_pred             HHHHHHHHHHCCCceEEEEecCc----hhHHHHHHHhccCCCceeEEEEECCEE-EecHHHHHHH
Confidence            45577788888998652223221    344444443 33466678999999984 7665444433

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=85.69  E-value=0.45  Score=27.23  Aligned_cols=50  Identities=20%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccC
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGG  156 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~  156 (171)
                      .+.+++.+.|++-..-.+++.    ...++.+.. ..|..+||.++++|++ |.|.
T Consensus        16 ~ak~~L~~~~i~y~~~di~~~----~~~~~~~~~-~~g~~tvP~i~i~~~~-IGG~   65 (82)
T d1fova_          16 RAKALLSSKGVSFQELPIDGN----AAKREEMIK-RSGRTTVPQIFIDAQH-IGGY   65 (82)
T ss_dssp             HHHHHHHHHTCCCEEEECTTC----SHHHHHHHH-HHSSCCSCEEEETTEE-EESH
T ss_pred             HHHHHHHHcCCCeEEEeccch----HHHHHHHHH-HhCCCCCCeEEECCEE-EecH
Confidence            455677788887652223331    123333332 3577899999999984 7664

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.47  E-value=0.47  Score=30.28  Aligned_cols=35  Identities=9%  Similarity=0.090  Sum_probs=24.0

Q ss_pred             hhCCCCcccEEEE--CCeeee--cc----------CCCHHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGKHEL--SG----------GQPPEVYLRAFQVA  169 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~~~i--~G----------~~~~~~~~~~l~~~  169 (171)
                      ..++|.|+||+++  +|+...  .|          ..+.+.|.+.++.+
T Consensus        70 ~~~~I~~~PT~~~f~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          70 KMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             TSSCSCSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             hhcCeeeEEEEEEEeCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            3699999999986  565321  12          24677888887765

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=83.15  E-value=0.94  Score=28.20  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=40.0

Q ss_pred             CCHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEE-EC--Ce--eeeccCCCHHHHHHHHHHH
Q 030793           97 GDKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFV-LN--GK--HELSGGQPPEVYLRAFQVA  169 (171)
Q Consensus        97 ~~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfv-v~--~~--~~i~G~~~~~~~~~~l~~~  169 (171)
                      .+.+.+.+.+++.|++..  .+.+..   ..+     ...+|+.|+|+++ ++  |+  +...|..+.+.+.+.|+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~--~~~d~~---~~~-----~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_          68 ESKIAVHNFMKSYGVNFP--VVLDTD---RQV-----LDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             CCHHHHHHHHHHTTCCSC--EEEETT---SHH-----HHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHcCCCcc--cccccc---chh-----hhhhhccccceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence            356778888888888753  222211   112     1358999999665 44  44  3456888888888877654

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=82.86  E-value=0.76  Score=27.73  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=24.7

Q ss_pred             hCCCCcccEEEE--CCe----eeeccCCCHHHHHHHHHH
Q 030793          136 SANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       136 ~~gv~gvPtfvv--~~~----~~i~G~~~~~~~~~~l~~  168 (171)
                      ..+|.|+||+++  +|+    ....|..+.+.|.+.|++
T Consensus        71 ~~~v~~~Pti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~  109 (116)
T d2djja1          71 PDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE  109 (116)
T ss_dssp             SSCCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHH
T ss_pred             cccccCCCEEEEEECCccCceEEecCCCCHHHHHHHHHH
Confidence            578999999965  342    134688889999988875

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.42  E-value=0.74  Score=29.62  Aligned_cols=36  Identities=8%  Similarity=0.001  Sum_probs=26.4

Q ss_pred             hhCCCCcccEEEE-C---Ce-eeeccCCCHHHHHHHHHHHh
Q 030793          135 YSANISGVPHFVL-N---GK-HELSGGQPPEVYLRAFQVAA  170 (171)
Q Consensus       135 ~~~gv~gvPtfvv-~---~~-~~i~G~~~~~~~~~~l~~~~  170 (171)
                      ..++|.|+||++| +   |+ ....|..+.+.|.+.|++..
T Consensus        95 ~~y~v~~~Pti~~idp~~ge~v~~~~~~~~~~fl~~L~~fl  135 (147)
T d2dlxa1          95 QFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFL  135 (147)
T ss_dssp             HHHTCCSSSEEEEECTTTCCCCEEESSCCHHHHHHHHHHHH
T ss_pred             hheecCceeEEEEEeCCCCeEecccCCCCHHHHHHHHHHHH
Confidence            3688999999865 3   43 23467789999998887653

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=82.00  E-value=0.63  Score=26.01  Aligned_cols=49  Identities=16%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             HHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEECCeeeeccC
Q 030793          101 FLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVLNGKHELSGG  156 (171)
Q Consensus       101 ~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv~~~~~i~G~  156 (171)
                      .+..+..+.|++-..-.++.. ...+.+.     ...|..++|.++++|+ .|.|.
T Consensus        20 ~ak~lL~~~~i~~~~~~v~~~-~~~~~~~-----~~~~~~tvP~i~i~g~-~IGG~   68 (74)
T d1nm3a1          20 KAKQLLHDKGLSFEEIILGHD-ATIVSVR-----AVSGRTTVPQVFIGGK-HIGGS   68 (74)
T ss_dssp             HHHHHHHHHTCCCEEEETTTT-CCHHHHH-----HHTCCSSSCEEEETTE-EEESH
T ss_pred             HHHHHHHHcCCCeEEEEccCc-HHHHHHH-----HHhCCccCCEEEECCE-EEECh
Confidence            355677788887652223221 1211111     2478899999999998 46664

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.97  E-value=0.9  Score=28.57  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=25.8

Q ss_pred             hhCCCCcccEEEE--CCe----eeeccCCCHHHHHHHHHH
Q 030793          135 YSANISGVPHFVL--NGK----HELSGGQPPEVYLRAFQV  168 (171)
Q Consensus       135 ~~~gv~gvPtfvv--~~~----~~i~G~~~~~~~~~~l~~  168 (171)
                      .+++|.|+|||++  +|+    +...|..+.+.|.+.|++
T Consensus        79 ~~~~v~~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~  118 (140)
T d2b5ea1          79 RGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE  118 (140)
T ss_dssp             SSCCCSSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHH
T ss_pred             cccccccCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHH
Confidence            3689999999986  342    124688899999888875

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.64  E-value=1  Score=27.99  Aligned_cols=61  Identities=15%  Similarity=0.176  Sum_probs=39.2

Q ss_pred             CHHHHHHHHHHcCCchhHhhhcCCCCChHHHHHHHHHhhCCCCcccEEEE-C--Ceee----eccCCCHHHHHHHHHH
Q 030793           98 DKEFLVECARKVGVEGAAEFLDDPNSGLNEVHEELKKYSANISGVPHFVL-N--GKHE----LSGGQPPEVYLRAFQV  168 (171)
Q Consensus        98 ~~~~L~~ia~~~Gld~~~~~~~~~~~~~~~v~~~~~~~~~gv~gvPtfvv-~--~~~~----i~G~~~~~~~~~~l~~  168 (171)
                      +.+.+.+.+++.|++-.  .+.+.+   ..+.     ..+|+.++|++++ +  |+..    ..|..+.+++.+.|.+
T Consensus        66 ~~~~~~~~~~~~~~~~p--~~~d~~---~~~~-----~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          66 DVGAMQSFVSKYNLNFT--NLNDAD---GVIW-----ARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             CHHHHHHHHHHHTCCSE--EEECTT---SHHH-----HHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             chhhhhhhhhhhccccc--eeeCch---HHHH-----HHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            56677788888888653  233321   1221     3589999999876 3  4322    2467788999998875