Citrus Sinensis ID: 030798

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHEEEEEEEEcccccccccHHEEHHHHHHcccccccEEEEEEEccccccccccccccccccccccEEEEEEEEEEHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEHEEEEcccHHHccccHHHEEEEEHEEEcccccccEEcHHHHcHHHEccccHHHHccccccEEEEEHEHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAvgilpsgvwlpfmqwcgRTLFFLVTACEIVQVHYVHSTISyrstwgnvtpkpsisIYEREKYLCKflcwppfqllqccpgcicdvsicldQTLLTYAQATGFKTG
Flexible Loop (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHStisyrstwgnvtpKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Low Complexity Region (SEG)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Disordered region (IsUnstruct)
*******IKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQAT*****
Disordered Region (DISOPRED)
*****QP**LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGF***
Disordered Region (DISEMBL)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Disordered Region (DISPRO)
****RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATG****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAHQRQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQLLQCCPGCICDVSICLDQTLLTYAQATGFKTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q2KIP8	254	Very-long-chain (3R)-3-hy	yes	no	0.590	0.397	0.297	0.0001
Q7SY06	359	Very-long-chain (3R)-3-hy	no	no	0.573	0.272	0.321	0.0001
Q5RBK3	255	Very-long-chain (3R)-3-hy	yes	no	0.590	0.396	0.297	0.0002
Q6Y1H2	254	Very-long-chain (3R)-3-hy	yes	no	0.590	0.397	0.297	0.0002
Q9D3B1	254	Very-long-chain (3R)-3-hy	no	no	0.590	0.397	0.297	0.0002
Q9QY80	281	Very-long-chain (3R)-3-hy	no	no	0.736	0.448	0.255	0.0007

>sp|Q2KIP8|HACD2_BOVIN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Bos taurus GN=PTPLB PE=2 SV=2

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTW 111
           PS V L  +Q   R          + +V    S + +   W
Sbjct: 101 PSSVVLTSIQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAW 141

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.
Bos taurus (taxid: 9913)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q7SY06|HADC_DANRE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase OS=Danio rerio GN=ptplad1 PE=2 SV=2

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 9   KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
           K +LF YN +Q  G  WI     +   +L   S   TF +  ++++  Q  A +EV++ A
Sbjct: 144 KGFLFMYNLVQFLGYSWIFVNMTVRLFILGQDSFYDTFHTIADVMYFCQMLAIMEVINPA 203

Query: 67  VGILPSGVWLPFMQWCGRT--LFFLVTACEIVQ-------VHYVHSTIS 106
           VG++ +GV   F+Q  GR   LF +  + E +Q       V Y+ STI 
Sbjct: 204 VGLVKTGVMPAFIQVMGRNFILFVIFGSLEDMQNKPVVFFVFYLWSTIE 252

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis. Involved in Rac1-signaling pathways leading to the modulation of gene expression.

Danio rerio (taxid: 7955)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RBK3|HACD2_PONAB Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Pongo abelii GN=PTPLB PE=2 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 42  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 101

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTW 111
           PS V L   Q   R          + +V    S + +   W
Sbjct: 102 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAW 142

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q6Y1H2|HACD2_HUMAN Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Homo sapiens GN=PTPLB PE=1 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTW 111
           PS V L   Q   R          + +V    S + +   W
Sbjct: 101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAW 141

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9D3B1|HACD2_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2 OS=Mus musculus GN=Ptplb PE=2 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 44/101 (43%)

Query: 11  YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
           YL  YN +  AGW+V    L+   L+  S    + S    +   QT A LE++H A+GI+
Sbjct: 41  YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIV 100

Query: 71  PSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTW 111
           PS V L   Q   R          + +V    S + +   W
Sbjct: 101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAW 141

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9QY80|HACD1_MOUSE Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1 OS=Mus musculus GN=Ptpla PE=2 SV=1

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 15  YNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGV 74
           YN    AGW+V    ++   +   +  G + S  + +   QT A LEVVH  +GI+P+ V
Sbjct: 72  YNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEVVHCLIGIVPTSV 131

Query: 75  WLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYERE--KYLCKF 132
            +  +Q   R     +    I  +    S + +  +W  VT     S Y      +L  F
Sbjct: 132 LVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSW-TVTEITRYSFYTFSLLDHLPHF 190

Query: 133 LCWPPFQLL 141
           + W  + L 
Sbjct: 191 IKWARYNLF 199

Responsible for the dehydration step in very long-chain fatty acids (VLCFAs) synthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2174319	272	AT5G59770 "AT5G59770" [Arabido	0.432	0.272	0.486	1.1e-14
UNIPROTKB|Q2KIP8	254	PTPLB "Very-long-chain (3R)-3-	0.654	0.440	0.292	1.1e-06
UNIPROTKB|Q6Y1H2	254	PTPLB "Very-long-chain (3R)-3-	0.654	0.440	0.292	1.8e-06
MGI|MGI:1918007	254	Ptplb "protein tyrosine phosph	0.654	0.440	0.292	3.1e-06
MGI|MGI:1353592	281	Ptpla "protein tyrosine phosph	0.754	0.459	0.257	1.8e-05
UNIPROTKB|H3BMZ1	139	PTPLAD1 "Very-long-chain (3R)-	0.520	0.640	0.301	0.0001
ZFIN|ZDB-GENE-040426-1200	404	ptplad1 "protein tyrosine phos	0.567	0.240	0.324	0.00014
UNIPROTKB|Q4W1W1	249	PTPLA "Very-long-chain (3R)-3-	0.730	0.502	0.25	0.00014
WB|WBGene00020517	218	hpo-8 [Caenorhabditis elegans	0.461	0.362	0.329	0.00087

TAIR|locus:2174319 AT5G59770 "AT5G59770" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 36/74 (48%), Positives = 52/74 (70%)

Query:    25 VAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGR 84
             +++ ++L++ LS K+I   +ASAG +I + QTAA LEV+HGA+GI+PSG   P MQW GR
Sbjct:    73 ISLLIILNSFLSNKTIISAYASAGFLISLFQTAAILEVLHGAIGIVPSGFLSPLMQWSGR 132

Query:    85 TLFFLVTACEIVQV 98
             T F L    +I +V
Sbjct:   133 THFILAIVGQIKEV 146

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2KIP8 PTPLB "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 33/113 (29%), Positives = 50/113 (44%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIY 123
             PS V L  +Q   R          + +V    S + +   W  +T     S Y
Sbjct:   101 PSSVVLTSIQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAW-TITEIIRYSFY 152

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|Q6Y1H2 PTPLB "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 2" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 33/113 (29%), Positives = 49/113 (43%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S  + +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIEKPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIY 123
             PS V L   Q   R          + +V    S + +   W  +T     S Y
Sbjct:   101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAW-TITEIIRYSFY 152

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1918007 Ptplb "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 33/113 (29%), Positives = 48/113 (42%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             YL  YN +  AGW+V    L+   L+  S    + S    +   QT A LE++H A+GI+
Sbjct:    41 YLVIYNVVMTAGWLVIAVGLVRAYLAKGSYHSLYYSIERPLKFFQTGALLEILHCAIGIV 100

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIY 123
             PS V L   Q   R          + +V    S + +   W  +T     S Y
Sbjct:   101 PSSVVLTSFQVMSRVFLIWAVTHSVKEVQSEDSVLLFVIAW-TITEIIRYSFY 152

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

MGI|MGI:1353592 Ptpla "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a" [Mus musculus (taxid:10090)]

 Score = 116 (45.9 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 34/132 (25%), Positives = 56/132 (42%)

Query:    11 YLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGIL 70
             +L  YN    AGW+V    ++   +   +  G + S  + +   QT A LEVVH  +GI+
Sbjct:    68 WLTFYNIAMTAGWLVLAIAMVRFYMEKGTHRGLYKSIQKTLKFFQTFALLEVVHCLIGIV 127

Query:    71 PSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYERE--KY 128
             P+ V +  +Q   R     +    I  +    S + +  +W  VT     S Y      +
Sbjct:   128 PTSVLVTGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVSW-TVTEITRYSFYTFSLLDH 186

Query:   129 LCKFLCWPPFQL 140
             L  F+ W  + L
Sbjct:   187 LPHFIKWARYNL 198

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|H3BMZ1 PTPLAD1 "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 3" [Homo sapiens (taxid:9606)]

 Score = 99 (39.9 bits), Expect = 0.00010, P = 0.00010
 Identities = 28/93 (30%), Positives = 45/93 (48%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K YLF YN +Q  G  WI     +   +L  +S   TF +  ++++  Q  A +E ++ A
Sbjct:    30 KGYLFMYNLVQFLGFSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAA 89

Query:    67 VGILPSGVWLPFMQWCGRT--LFFLVTACEIVQ 97
             +G+  S V    +Q  GR   LF +    E +Q
Sbjct:    90 IGVTTSPVLPSLIQLLGRNFILFIIFGTMEEMQ 122

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0007254 "JNK cascade" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

ZFIN|ZDB-GENE-040426-1200 ptplad1 "protein tyrosine phosphatase-like A domain containing 1" [Danio rerio (taxid:7955)]

 Score = 112 (44.5 bits), Expect = 0.00014, P = 0.00014
 Identities = 35/108 (32%), Positives = 55/108 (50%)

Query:     9 KLYLFGYNSLQAAG--WIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGA 66
             K +LF YN +Q  G  WI     +   +L   S   TF +  ++++  Q  A +EV++ A
Sbjct:   144 KGFLFMYNLVQFLGYSWIFVNMTVRLFILGQDSFYDTFHTIADVMYFCQMLAIMEVINPA 203

Query:    67 VGILPSGVWLPFMQWCGRT--LFFLVTACEIVQ-------VHYVHSTI 105
             VG++ +GV   F+Q  GR   LF +  + E +Q       V Y+ STI
Sbjct:   204 VGLVKTGVMPAFIQVMGRNFILFVIFGSLEDMQNKPVVFFVFYLWSTI 251

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|Q4W1W1 PTPLA "Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 109 (43.4 bits), Expect = 0.00014, P = 0.00014
 Identities = 32/128 (25%), Positives = 54/128 (42%)

Query:    10 LYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGI 69
             ++L  YN    AGW+V    ++   +   +  G + S  + +   QT A LE+VH  +GI
Sbjct:    35 VWLTFYNIAMTAGWLVLAIAMVRFYMEKGTHKGLYKSIQKTLKFFQTFALLEIVHCLIGI 94

Query:    70 LPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYERE--K 127
             +P+ V +  +Q   R     +    I  +    S + +   W  VT     S Y      
Sbjct:    95 VPTSVIVAGVQVSSRIFMVWLITHSIKPIQNEESVVLFLVAW-TVTEITRYSFYTFSLLD 153

Query:   128 YLCKFLCW 135
             +L  F+ W
Sbjct:   154 HLPYFIKW 161

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0004864 "protein phosphatase inhibitor activity" evidence=IEA

WB|WBGene00020517 hpo-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 102 (41.0 bits), Expect = 0.00087, P = 0.00087
 Identities = 26/79 (32%), Positives = 38/79 (48%)

Query:     8 IKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAV 67
             ++ YL  YN LQ  GW   +   +  L +  +    + S    + I QTAA LEV+H  V
Sbjct:     3 VQTYLVAYNVLQILGWSAILVKTVLGLANGLTWPQLYESVEFELKIFQTAAILEVIHAIV 62

Query:    68 GILPSGVWLPFMQWCGRTL 86
             G++ S V    MQ   R +
Sbjct:    63 GLVRSPVGTTAMQVTSRVV 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.140   0.474    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       171   0.00090  108 3  11 22  0.44    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  176 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.30u 0.08s 15.38t   Elapsed:  00:00:01
  Total cpu time:  15.30u 0.08s 15.38t   Elapsed:  00:00:01
  Start:  Mon May 20 19:06:32 2013   End:  Mon May 20 19:06:33 2013

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam04387	161	pfam04387, PTPLA, Protein tyrosine phosphatase-lik	1e-07
PLN02838	221	PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase	0.001

>gnl|CDD|202993 pfam04387, PTPLA, Protein tyrosine phosphatase-like protein, PTPLA

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 55  QTAAFLEVVHGAVGILPSGVWLPFMQWCGRT--LFFLVTACEIVQVHYV 101
           QT A LE++H A G++ S V   F+Q   R   ++ ++ +   VQ    
Sbjct: 1   QTLAVLEILHAAFGLVRSPVLTTFLQVSSRLFVVWGILYSLPEVQASPA 49

This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types. Length = 161

>gnl|CDD|166479 PLN02838, PLN02838, 3-hydroxyacyl-CoA dehydratase subunit of elongase

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 9  KLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVG 68
          +LYL  YN +   GW   +++ ++ L  +   A  +A+    + + QTAA LE++HG VG
Sbjct: 10 RLYLTVYNWVVFIGWAQVLYLAVTTLKESGHEA-VYAAVERPLQLAQTAAVLEILHGLVG 68

Query: 69 ILPSGV 74
          ++ S V
Sbjct: 69 LVRSPV 74

Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PLN02838	221	3-hydroxyacyl-CoA dehydratase subunit of elongase	100.0
KOG3187	223	consensus Protein tyrosine phosphatase-like protei	100.0
COG5198	209	Ptpl Protein tyrosine phosphatase-like protein (co	99.97
PF04387	164	PTPLA: Protein tyrosine phosphatase-like protein,	99.96

>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase

Probab=100.00  E-value=2.7e-45  Score=305.74  Aligned_cols=159  Identities=21%  Similarity=0.327  Sum_probs=144.0

Q ss_pred             CCcchhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHhhhhcccccCCcchhhHhhhhc
Q 030798            5 RQPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGR   84 (171)
Q Consensus         5 ~~l~~~YL~~YN~~q~~gW~~iL~~~i~~~l~~g~~~~~y~~v~~~l~~~Qt~AvLEIlHsa~GLVrS~v~tT~~QV~sR   84 (171)
                      ++++|.||++||++|++||+++|++++.++.++|+ ++.|+++++.++++|++|++||+|+++|+||||+.+|++||+||
T Consensus         6 ~~l~~~YL~~YN~~~~~gW~~il~~~~~~~~~~~~-~~~~~~v~~~l~~~QtlAilEilHa~~GlVrS~v~~T~~QV~sR   84 (221)
T PLN02838          6 SLLRRLYLTVYNWVVFIGWAQVLYLAVTTLKESGH-EAVYAAVERPLQLAQTAAVLEILHGLVGLVRSPVSATLPQIGSR   84 (221)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcchHHHHHHHH
Confidence            35889999999999999999999999999988773 46799999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeeccccccchhhhhhhhhhhcchhhhhhhhhcccc---cceeeeccccccccc--cCCCceeeeeeeehhhh
Q 030798           85 TLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREK---YLCKFLCWPPFQLLQ--CCPGCICDVSICLDQTL  159 (171)
Q Consensus        85 l~ivw~I~~~~p~~~~~~~~~~ll~aWSitEpiiRYsfY~~~~---~~~~~l~W~~~~~l~--~~~g~~~~~~~~~~~~~  159 (171)
                      ++++|+|++..||++++++++.|++|||++| +|||+||+++.   ..|+||+|+||+.++  +|.|..+|+..+.  .-
T Consensus        85 ~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tE-vIRY~yY~~~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~i~--~a  161 (221)
T PLN02838         85 LFLTWGILWSFPEVRSHILVTSLVISWSITE-IIRYSFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLIY--IA  161 (221)
T ss_pred             HHHHHHHhhcCcchhcccHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcHHHHHHHHhccceecchHHHHHHHHHH--Hh
Confidence            9999999999999999999999999999999 99999998873   358899999988544  8889988887654  47


Q ss_pred             hhhHhhhC
Q 030798          160 LTYAQATG  167 (171)
Q Consensus       160 ~~~~~~~~  167 (171)
                      |||+++++
T Consensus       162 l~~~~~~~  169 (221)
T PLN02838        162 LPYMKASE  169 (221)
T ss_pred             chhhhccc
Confidence            88888765

>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]

Probab=100.00  E-value=2e-39  Score=269.85  Aligned_cols=159  Identities=23%  Similarity=0.280  Sum_probs=145.3

Q ss_pred             CcchhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHhhhhcccccCCcchhhHhhhhce
Q 030798            6 QPIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRT   85 (171)
Q Consensus         6 ~l~~~YL~~YN~~q~~gW~~iL~~~i~~~l~~g~~~~~y~~v~~~l~~~Qt~AvLEIlHsa~GLVrS~v~tT~~QV~sRl   85 (171)
                      .+++.||++||.+|++||++++..+......+|+.++.||++++.++++|++|++|++|+++|+||||+++|++||.||+
T Consensus         7 ~~~~~yL~~YNl~~fvgw~~~~l~~~~~~~~~~~~~~~y~si~~~l~~~Qtla~lEi~~~~~g~v~S~~v~t~~Qv~sRl   86 (223)
T KOG3187|consen    7 MLKKSYLFLYNLVSFVGWIVLLLATVVLYLTKGSPAVLYDSIEKVLKFCQTLALLEIINASFGLVKSSPVVTLFQVSSRL   86 (223)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeeeeeecccc
Confidence            47899999999999999999999999999998988889999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeccccccchhhhhhhhhhhcchhhhhhhhhcccc--cceeeeccccccc--cccCCCceeeeeeeehhhhhh
Q 030798           86 LFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREK--YLCKFLCWPPFQL--LQCCPGCICDVSICLDQTLLT  161 (171)
Q Consensus        86 ~ivw~I~~~~p~~~~~~~~~~ll~aWSitEpiiRYsfY~~~~--~~~~~l~W~~~~~--l~~~~g~~~~~~~~~~~~~~~  161 (171)
                      +++|++++..|++++++++..++++|++|| ++||+||+++.  ..|++++|.||+.  +-+|.|+.||.....  -.+|
T Consensus        87 ~il~~i~~~~~~~~~~~~~~~l~~~ws~tE-IiRY~fY~f~~~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i~--~al~  163 (223)
T KOG3187|consen   87 FILWGIFHMCSIIQASAVVFFLLIAWSLTE-IIRYSFYAFNLLGVLPKLLTWLRYTLFILLYPIGITSELLTLY--AALP  163 (223)
T ss_pred             eehhhhhhccchhhccchHHHHHHHHHHHH-HHHHHHHHHHhccCCchhhhHhhhhhheeeecceehhhHHHHH--HHHH
Confidence            999999999999999999999999999999 99999999996  6789999999983  338999999987553  3466


Q ss_pred             hHhhhC
Q 030798          162 YAQATG  167 (171)
Q Consensus       162 ~~~~~~  167 (171)
                      +++.+|
T Consensus       164 ~~~~~~  169 (223)
T KOG3187|consen  164 AAGETE  169 (223)
T ss_pred             Hhcccc
Confidence            666654

>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]

Probab=99.97  E-value=6.3e-32  Score=217.67  Aligned_cols=146  Identities=16%  Similarity=0.141  Sum_probs=129.2

Q ss_pred             cchhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHhhhhcccccCCcchhhHhhhhcee
Q 030798            7 PIKLYLFGYNSLQAAGWIVAIFMLLSNLLSTKSIAGTFASAGEIIWILQTAAFLEVVHGAVGILPSGVWLPFMQWCGRTL   86 (171)
Q Consensus         7 l~~~YL~~YN~~q~~gW~~iL~~~i~~~l~~g~~~~~y~~v~~~l~~~Qt~AvLEIlHsa~GLVrS~v~tT~~QV~sRl~   86 (171)
                      ++-.||-+||.+++.+|.+++.....-+-..++++ .+++......++|++|++|+.|+.+|.|+|+++||.+||.||++
T Consensus         5 l~isyl~lYN~~s~f~w~~vlll~~lv~~kt~dpa-~f~et~~va~lvQt~ai~E~~ns~~g~v~S~~LtTv~Qv~SRl~   83 (209)
T COG5198           5 LPISYLRLYNTASCFIWCIVLLLASLVFYKTMDPA-VFHETLRVAGLVQTFAIMEAANSSAGKVNSRYLTTVMQVISRLF   83 (209)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhhhccChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchhHHHHHHHHHH
Confidence            34589999999999999999998887777777776 68888999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeccccccchhhhhhhhhhhcchhhhhhhhhcccc-cceeeecccccc--ccccCCCceeeeeee
Q 030798           87 FFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREK-YLCKFLCWPPFQ--LLQCCPGCICDVSIC  154 (171)
Q Consensus        87 ivw~I~~~~p~~~~~~~~~~ll~aWSitEpiiRYsfY~~~~-~~~~~l~W~~~~--~l~~~~g~~~~~~~~  154 (171)
                      ++||++...-..-++|.++.+.+|||+|| ++||.||+++. ..|++++|.|||  +.-+|+|..-|+-+.
T Consensus        84 ivwgvf~p~~~~i~s~~y~s~~~aWsite-ivRYafY~F~lng~p~~l~~lRYNlFlilyPiG~~sE~~~~  153 (209)
T COG5198          84 IVWGVFYPYCGIINSWTYPSITTAWSITE-IVRYAFYTFRLNGIPNTLRVLRYNLFLILYPIGFVSEMYCL  153 (209)
T ss_pred             HHHhhhhccccccccchHHHHHHHHHHHH-HHHHHHHHHHhcCCchhhhhhhhhhhhhhcchHHHHHHHHH
Confidence            99999965555445899999999999999 99999999995 799999999999  345889988776543

>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=99.96  E-value=9.6e-32  Score=215.27  Aligned_cols=110  Identities=21%  Similarity=0.287  Sum_probs=96.8

Q ss_pred             HHHHHHHHhhhhcccccCCcchhhHhhhhceeeeeeeeeeccccccchhhhhhhhhhhcchhhhhhhhhcccc--cceee
Q 030798           55 QTAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVHYVHSTISYRSTWGNVTPKPSISIYEREK--YLCKF  132 (171)
Q Consensus        55 Qt~AvLEIlHsa~GLVrS~v~tT~~QV~sRl~ivw~I~~~~p~~~~~~~~~~ll~aWSitEpiiRYsfY~~~~--~~~~~  132 (171)
                      |++|++||+|+++|+||||+.+|++||+||++++|++++..||.++++++++|++|||++| +|||+||+++.  ..+++
T Consensus         1 Q~~a~lEi~h~~~Glv~S~~~~t~~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~E-viRY~yY~~~l~~~~p~~   79 (164)
T PF04387_consen    1 QTLAVLEILHAALGLVRSPVLTTFMQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTE-VIRYPYYALKLLGIVPYW   79 (164)
T ss_pred             CchHHHHHHHHHhccccCccHHHHHHHHHHHHeehhhhccccccccccchhhHHHHHHhhh-cchhHHHHHHhcCCCchH
Confidence            8999999999999999999999999999999999999999999999999999999999999 99999999996  46778


Q ss_pred             ecccccccc--ccCCCceeeeeeeehhhhhhhHhhhC
Q 030798          133 LCWPPFQLL--QCCPGCICDVSICLDQTLLTYAQATG  167 (171)
Q Consensus       133 l~W~~~~~l--~~~~g~~~~~~~~~~~~~~~~~~~~~  167 (171)
                      ++|+||+.+  -+|.|..+|+...  +.-+|+.++++
T Consensus        80 L~WLRYs~FivLYPlG~~~E~~~~--~~al~~~~~~~  114 (164)
T PF04387_consen   80 LTWLRYSAFIVLYPLGILSELLLI--YRALPYIKETK  114 (164)
T ss_pred             HHHHHHhhHhhccchHHHHHHHHH--HHhCcccccCC
Confidence            888887722  2889999887654  45567766554

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00