Citrus Sinensis ID: 030800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccccccccccEEEccccccccccHHcccccccccEEEEcccccccHHHHHHHHHHccccccccccccEEEEccccccHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHHcccccccccHHHHcccEEEEccEEEEHHHcEEEEEEEccEEEEEEccHHHHHHHHHHHHccccccccEEcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MEAAIVALSRELTKlrtgraspgmlDHIIVEtggvkmplnHLAVVSVldsktlsinpydpntlKELESAIvssplglnprvdGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKkagsslpkdQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG
Flexible Loop (DISEMBL)
MEAAIVALSRELtklrtgraspgmLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVaktsedvkqSIRRSRQKALDMMkkagsslpkdqmKRLEKEVDELTKKYVKSADDVCKAKEKEINEG
Low Complexity Region (SEG)
MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG
Disordered region (IsUnstruct)
*********************PGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVA*****************************************************************
Disordered Region (DISOPRED)
***AIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKK***********RLEKEVDELTKKYVKSADDVCKAKEKEINE*
Disordered Region (DISEMBL)
MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG
Disordered Region (DISPRO)
****IVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQxxxxxxxxxxxxxxxxxxxxxVCKAKEKEINEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
B8DSA1	186	Ribosome-recycling factor	yes	no	0.994	0.913	0.424	6e-31
Q9KA66	185	Ribosome-recycling factor	yes	no	0.994	0.918	0.430	7e-31
P81101	185	Ribosome-recycling factor	yes	no	0.994	0.918	0.412	5e-30
Q5WFT1	185	Ribosome-recycling factor	yes	no	0.994	0.918	0.418	8e-30
Q67PB4	185	Ribosome-recycling factor	yes	no	0.994	0.918	0.406	2e-29
Q895K9	183	Ribosome-recycling factor	yes	no	0.982	0.918	0.416	2e-29
Q97I63	185	Ribosome-recycling factor	yes	no	0.982	0.908	0.435	3e-29
Q3A398	185	Ribosome-recycling factor	yes	no	0.994	0.918	0.395	3e-29
A7Z4S3	185	Ribosome-recycling factor	yes	no	0.994	0.918	0.395	3e-29
A4IMC6	185	Ribosome-recycling factor	yes	no	0.994	0.918	0.395	4e-29

>sp|B8DSA1|RRF_DESVM Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=frr PE=3 SV=1

 Score =  133 bits (334), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 111/172 (64%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME A+ +L RE  KLRTGRAS  ++D+I V+  G   P++ LA VSV DS+TL+I P+D 
Sbjct: 14  MEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSRTLTIQPWDR 73

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +  + +E AI+ S LGLNP  DG+ +  +IP LT+E  + + KV  K +E+ K ++R  R
Sbjct: 74  SAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEEAKVAVRNVR 133

Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A D +KK   G  + +D +++   +V +LT ++V  +D+ C AKEKEI E
Sbjct: 134 RDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEIME 185

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) (taxid: 883)

>sp|Q9KA66|RRF_BACHD Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=frr PE=3 SV=3

 Score =  133 bits (334), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 108/172 (62%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M  A  AL REL KLR GRA+P MLD I VE  G + PLN LA +SV +++ L I P+D 
Sbjct: 13  MTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVIQPFDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +++ ++E AI  S LGL P  DG  +   IP LT+E  + + K+V K++E+ K ++R  R
Sbjct: 73  SSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVAVRNIR 132

Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A D +KK      L +D ++R+ ++V +LT KY++  D   +AKEKEI E
Sbjct: 133 RDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQIDQKAEAKEKEIME 184

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

>sp|P81101|RRF_BACSU Ribosome-recycling factor OS=Bacillus subtilis (strain 168) GN=frr PE=1 SV=2

 Score =  130 bits (326), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 106/172 (61%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME AI A  REL  +R GRA+P +LD + VE  G + PLN L+ ++V +++ L I PYD 
Sbjct: 13  MEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
             + ++E AI+ + LGL P  DG  +  AIPALT+E  + + KVV K +E+ K ++R  R
Sbjct: 73  TAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132

Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A D +KK      + +D+++   ++V +LT +YV   D V K KEKEI E
Sbjct: 133 RDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTKDKEKEIME 184

Plays a role in sporulation.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q5WFT1|RRF_BACSK Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1

 Score =  129 bits (324), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 107/172 (62%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ AI  LSREL KLR GRA+P +LD + VE  G + PLN LA V+V +++ L I PYD 
Sbjct: 13  MDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
             +  +E AI+ S LGL P  DGQ +  AIP LT+E  + + ++V+KT+E+ K ++R  R
Sbjct: 73  TAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEESKVAVRNIR 132

Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A D +KK      + +D+++    ++ +LT  YV   D+  K KE+EI E
Sbjct: 133 RDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEIIE 184

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Bacillus clausii (strain KSM-K16) (taxid: 66692)

>sp|Q67PB4|RRF_SYMTH Ribosome-recycling factor OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=frr PE=3 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 110/172 (63%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ A+    +EL  +R  RA+P +LD + VE  G ++P+N++A + V D +TL I P+D 
Sbjct: 13  MKKAVEVFRQELAGMRANRATPALLDKVRVEAYGSEVPVNNVATIEVPDPRTLVIKPWDR 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + +K +E AI +S LGLNP  DGQ +  +IP +T+E  + + KVVAK +E+ + +IR  R
Sbjct: 73  SLIKAIERAINASDLGLNPTNDGQVIRLSIPPMTEERRRELVKVVAKRTEEQRVAIRNIR 132

Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A + +KK     ++ +D+ KR + EV +LT KY+K  D +  AKEKEI E
Sbjct: 133 RDANEQIKKLEKDKAVSEDESKRAQDEVQKLTDKYIKEVDQLMAAKEKEIME 184

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Symbiobacterium thermophilum (taxid: 2734)

>sp|Q895K9|RRF_CLOTE Ribosome-recycling factor OS=Clostridium tetani (strain Massachusetts / E88) GN=frr PE=3 SV=1

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 103/168 (61%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M  A++AL ++L  L+ GRA+P MLD I  E  G   PL+ LA +SV +++ L I P+D 
Sbjct: 13  MSKALLALKKDLASLKAGRANPAMLDKIEAEYYGTMTPLSQLANISVPEARILQIQPWDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           ++LK +E AI+ S LGLNP  DG  +   IP LT+E  + + K V K  ED K +IR  R
Sbjct: 73  SSLKAIEKAILVSDLGLNPNNDGTIIRLIIPELTEETRRNIVKTVKKYGEDTKIAIRSVR 132

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           +   D +K   S + +D +K+ E+E+ ++T  YVK  D++   KEKEI
Sbjct: 133 RDGNDKIKDLKSDMSEDDIKKAEEEIQKITDNYVKKVDEMIDIKEKEI 180

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Clostridium tetani (strain Massachusetts / E88) (taxid: 212717)

>sp|Q97I63|RRF_CLOAB Ribosome-recycling factor OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=frr PE=3 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M  +I AL +ELT ++ GRA+P MLD I V+  G   PLN LA +SV +S+ L I P+D 
Sbjct: 13  MTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + +K +E AI+ S LGLNP  DG  +   IP LT+E  + + K V K  ED K ++R  R
Sbjct: 73  SAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGKVALRAIR 132

Query: 121 QKALDMMK--KAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A D +K  K  +S+ +D+MK  E ++ + T  YVK  D + +AKEKEI
Sbjct: 133 RDANDKVKSLKKDNSITEDEMKSAENDIQKKTDSYVKEIDKMVEAKEKEI 182

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

>sp|Q3A398|RRF_PELCD Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=frr PE=3 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ A+ +L +++TK+RTGRAS  +LD ++V+  G   PLN +  ++V + + ++I P++ 
Sbjct: 13  MDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQPWEK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
             L ++E AI  + LGLNP  DG  +   IP +T+E  + M KVV K  ED K  +R +R
Sbjct: 73  KLLADIERAIFKADLGLNPTSDGNLIRLVIPPMTEERRKEMGKVVRKMGEDAKVGVRSAR 132

Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A D MKK      + +D +KR EKE+ ++T  YV   DD+   KEKEI E
Sbjct: 133 RDANDGMKKLEKNKEISEDDLKRGEKEIQDVTDSYVAKIDDLVSQKEKEIME 184

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963)

>sp|A7Z4S3|RRF_BACA2 Ribosome-recycling factor OS=Bacillus amyloliquefaciens (strain FZB42) GN=frr PE=3 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME A+ A SREL  +R GRA+P +LD + VE  G + PLN L+ ++V +++ L + PYD 
Sbjct: 13  MEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
             + ++E AI+ + LG+ P  DG  +  AIPALT+E  + + KVV K +E+ K ++R  R
Sbjct: 73  TAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVR 132

Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + + D +KK      + +D+++   ++V +LT +YV   D V K KEKEI E
Sbjct: 133 RDSNDDLKKLEKNGDITEDELRASSEDVQKLTDEYVSKIDSVTKDKEKEIME 184

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Bacillus amyloliquefaciens (strain FZB42) (taxid: 326423)

>sp|A4IMC6|RRF_GEOTN Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=frr PE=3 SV=1

 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 107/172 (62%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ A+ A SREL  +R GRA+ G+L+ + V+  GV  P+N LA +SV +++ L I PYD 
Sbjct: 13  MDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQPYDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + +KE+E AI++S LG+ P  DG  +   IP LT+E  + + K+V K SE+ K ++R  R
Sbjct: 73  SVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAKVAVRNIR 132

Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A D +KK    S + +D+++    EV +LT  ++   D + K KEKE+ E
Sbjct: 133 RDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKEKEKEVME 184

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Geobacillus thermodenitrificans (strain NG80-2) (taxid: 420246)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
42563413	267	ribosome recycling factor [Arabidopsis t	1.0	0.640	0.824	1e-78
51971543	267	putative ribosome recycling factor [Arab	1.0	0.640	0.824	1e-78
225452150	258	PREDICTED: ribosome-recycling factor [Vi	1.0	0.662	0.830	1e-75
147840489	258	hypothetical protein VITISV_018268 [Viti	1.0	0.662	0.824	6e-75
255536967	262	ribosome recycling factor, putative [Ric	1.0	0.652	0.801	4e-74
224055693	273	predicted protein [Populus trichocarpa]	1.0	0.626	0.766	4e-72
6091742	284	putative ribosome recycling factor [Arab	1.0	0.602	0.714	1e-71
449495268	263	PREDICTED: ribosome-recycling factor-lik	1.0	0.650	0.766	1e-71
363807224	261	uncharacterized protein LOC100814905 [Gl	1.0	0.655	0.766	3e-71
449441416	263	PREDICTED: ribosome-recycling factor-lik	1.0	0.650	0.760	1e-70

>gi|42563413|ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana] gi|34146850|gb|AAQ62433.1| At3g01800 [Arabidopsis thaliana] gi|51970776|dbj|BAD44080.1| putative ribosome recycling factor [Arabidopsis thaliana] gi|62319213|dbj|BAD94407.1| putative ribosome recycling factor [Arabidopsis thaliana] gi|332640195|gb|AEE73716.1| ribosome recycling factor [Arabidopsis thaliana]

 Score =  297 bits (760), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/171 (82%), Positives = 163/171 (95%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           MEAAI ALSR+LTKLRTGRA+PGMLDHI+VETGGVKMPLNHLA+VSVLD KTLS+NPYDP
Sbjct: 97  MEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDP 156

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +T+KELE AIV+SPLGLNP++DGQRL+A+IPALTKEHIQAMCK+V K+SE VKQSIRR+R
Sbjct: 157 DTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRAR 216

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG 171
           QKALD +KKAGSSLPKD++KRLEKEVDELTKK+VKSA+D+CK+KEKEI E 
Sbjct: 217 QKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITEA 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971543|dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis thaliana]

 Score =  296 bits (759), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/171 (82%), Positives = 163/171 (95%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           MEAAI ALSR+LTKLRTGRA+PGMLDHI+VETGGVKMPLNHLA+VSVLD KTLS+NPYDP
Sbjct: 97  MEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDP 156

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +T+KELE AIV+SPLGLNP++DGQRL+A+IPALTKEHIQAMCK+V K+SE VKQSIRR+R
Sbjct: 157 DTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRAR 216

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG 171
           QKALD +KKAGSSLPKD++KRLEKEVDELTKK+VKSA+D+CK+KEKEI E 
Sbjct: 217 QKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITEA 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452150|ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis vinifera] gi|296090242|emb|CBI40061.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 158/171 (92%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+AA+VALSREL+KLRTGRAS GMLDHIIVETGGVKMPL+ LAVVSVLD KTLS+ PYD 
Sbjct: 88  MDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLSVTPYDL 147

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + LK+LE+AIVSSPLGLNP+ DG+RLIA IP LTKEHIQAMCKVVAK+ EDVKQSIRR+R
Sbjct: 148 DALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQSIRRAR 207

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG 171
           QKALDM+KKAGSSLPKD  KRLEKEVDELTKK+VKSA+D+CKAKEKEI EG
Sbjct: 208 QKALDMIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMCKAKEKEIAEG 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840489|emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera]

 Score =  285 bits (728), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 141/171 (82%), Positives = 157/171 (91%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+AA+VALSREL+KLRTGRAS GMLDHIIVETGGVKMPL+ LAVVSVLD KTLS+ PYD 
Sbjct: 88  MDAAVVALSRELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLSVTPYDL 147

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + LK+LE+AIVSSPLGLNP+ DG+RLIA IP LTKEHIQAMCKVVAK+ EDVKQSIRR+R
Sbjct: 148 DALKQLENAIVSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQSIRRAR 207

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG 171
           QKALD +KKAGSSLPKD  KRLEKEVDELTKK+VKSA+D+CKAKEKEI EG
Sbjct: 208 QKALDXIKKAGSSLPKDVAKRLEKEVDELTKKFVKSAEDMCKAKEKEIAEG 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536967|ref|XP_002509550.1| ribosome recycling factor, putative [Ricinus communis] gi|223549449|gb|EEF50937.1| ribosome recycling factor, putative [Ricinus communis]

 Score =  282 bits (721), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 137/171 (80%), Positives = 155/171 (90%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           MEAAIV+LSRELTKLRTGRAS GMLDHIIVET GVKMPLN LAVV+V+D KTLS+NPYDP
Sbjct: 92  MEAAIVSLSRELTKLRTGRASAGMLDHIIVETDGVKMPLNRLAVVAVMDPKTLSVNPYDP 151

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N +  LE AIVSSPLGLNPRVDG+RLIA+IP LTKEH+QAMCKVV K+ E+VKQS+RR+R
Sbjct: 152 NMVSALEKAIVSSPLGLNPRVDGERLIASIPPLTKEHMQAMCKVVGKSCEEVKQSVRRAR 211

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG 171
           QKALD +KKAGS+L KD +KRLEKEVDELTKK+VKSA+D+CKAKEKEI  G
Sbjct: 212 QKALDTIKKAGSNLSKDDVKRLEKEVDELTKKFVKSAEDICKAKEKEITVG 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055693|ref|XP_002298606.1| predicted protein [Populus trichocarpa] gi|222845864|gb|EEE83411.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (703), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 152/171 (88%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+AA+VALSREL KLRTGRAS GMLDHIIVET GVK+PLN  AVVSV+D+KTLS+NPYDP
Sbjct: 103 MDAAVVALSRELQKLRTGRASAGMLDHIIVETDGVKLPLNRSAVVSVMDAKTLSVNPYDP 162

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           NTLK+LE+AIVSSPLGLNP+ DG RLIAAIP LTKEH QAMCKVVAK+ ED +QSIRR+R
Sbjct: 163 NTLKQLENAIVSSPLGLNPQRDGDRLIAAIPPLTKEHTQAMCKVVAKSCEDCRQSIRRAR 222

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG 171
           QKA+D +KKAGSS PKD  K+LEKE++E+TKK+VKSA+D+C  KEKEI  G
Sbjct: 223 QKAMDTVKKAGSSFPKDDAKKLEKEIEEMTKKFVKSAEDMCNNKEKEIKTG 273

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6091742|gb|AAF03454.1|AC010797_30 putative ribosome recycling factor [Arabidopsis thaliana]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 135/189 (71%), Positives = 158/189 (83%), Gaps = 18/189 (9%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           MEAAI ALSR+LTKLRTGRA+PGMLDHI+VETGGVKMPLNHLA+VSVLD KTLS+NPYDP
Sbjct: 96  MEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDP 155

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKE------------------HIQAMC 102
           +T+KELE AIV+SPLGLNP++DGQRL+A+IPA                       +QAMC
Sbjct: 156 DTVKELEKAIVASPLGLNPKLDGQRLVASIPAYESSSLSNFISLRLSLDPIYLYELQAMC 215

Query: 103 KVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCK 162
           K+V K+SE VKQSIRR+RQKALD +KKAGSSLPKD++KRLEKEVDELTKK+VKSA+D+CK
Sbjct: 216 KIVTKSSEVVKQSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCK 275

Query: 163 AKEKEINEG 171
           +KEKEI E 
Sbjct: 276 SKEKEITEA 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495268|ref|XP_004159783.1| PREDICTED: ribosome-recycling factor-like [Cucumis sativus]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 151/171 (88%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           MEA+IVALS EL+KLRTGRASPGMLDHIIVET GVK+PLN +A VSVLDSKTLSINPYDP
Sbjct: 93  MEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDP 152

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +TLK LE+AI+SSPLG+ PRVDG+RLIA IP LTKEHIQAMCK+V K  ED +QSIRR+R
Sbjct: 153 STLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRAR 212

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG 171
           QKA+D +KK  SS PKD +KRLEKEVDELTKK++KSA+++CK KEKEI  G
Sbjct: 213 QKAMDTVKKISSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKEITGG 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807224|ref|NP_001242099.1| uncharacterized protein LOC100814905 [Glycine max] gi|255644392|gb|ACU22701.1| unknown [Glycine max]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 154/171 (90%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           MEAA+ ALS EL+KLRTGRASPGMLDHIIVET G+KMPLN LAVVSVLD KTLS+NPYDP
Sbjct: 91  MEAAMAALSTELSKLRTGRASPGMLDHIIVETSGLKMPLNRLAVVSVLDPKTLSVNPYDP 150

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
            TLK+LE+AIVSSPLGLNP+ DG+RLIA IP LTKEH+QAM K+VAK+ ED +QSIRR+R
Sbjct: 151 ETLKQLENAIVSSPLGLNPKSDGERLIAVIPPLTKEHMQAMTKLVAKSCEDARQSIRRAR 210

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG 171
           Q+A+D +KK  SSLPKD +KRLEKEVD+LTKK++KSA D+CKAKEKEI++G
Sbjct: 211 QQAMDAIKKLYSSLPKDDIKRLEKEVDDLTKKFIKSAKDICKAKEKEISQG 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441416|ref|XP_004138478.1| PREDICTED: ribosome-recycling factor-like [Cucumis sativus]

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/171 (76%), Positives = 150/171 (87%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           MEA+IVALS EL+KLRTGRASPGMLDHIIVET GVK+PLN +A VSVLDSKTLSINPYDP
Sbjct: 93  MEASIVALSGELSKLRTGRASPGMLDHIIVETSGVKLPLNQIAAVSVLDSKTLSINPYDP 152

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +TLK LE+AI+SSPLG+ PRVDG+RLIA IP LTKEHIQAMCK+V K  ED +QSIRR+ 
Sbjct: 153 STLKNLETAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRAP 212

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINEG 171
           QKA+D +KK  SS PKD +KRLEKEVDELTKK++KSA+++CK KEKEI  G
Sbjct: 213 QKAMDTVKKISSSYPKDDIKRLEKEVDELTKKFIKSAEELCKGKEKEITGG 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2082309	267	AT3G01800 [Arabidopsis thalian	0.994	0.636	0.829	2e-72
TIGR_CMR|GSU_1918	185	GSU_1918 "ribosome recycling f	0.994	0.918	0.389	1.5e-28
TIGR_CMR|CHY_1784	185	CHY_1784 "ribosome recycling f	0.982	0.908	0.394	1.9e-28
TIGR_CMR|DET_0374	185	DET_0374 "ribosome recycling f	0.994	0.918	0.383	1.3e-27
TIGR_CMR|BA_3962	185	BA_3962 "ribosome recycling fa	0.994	0.918	0.377	5.7e-27
UNIPROTKB|P66734	185	frr "Ribosome-recycling factor	0.988	0.913	0.358	4e-26
DICTYBASE|DDB_G0268518	263	DDB_G0268518 "Ribosome-recycli	0.970	0.631	0.386	1.8e-25
TIGR_CMR|SO_1632	185	SO_1632 "ribosome recycling fa	0.994	0.918	0.377	4.6e-25
TAIR|locus:2077254	275	RRF ""ribosome recycling facto	0.976	0.607	0.374	2.6e-24
TIGR_CMR|CJE_0285	185	CJE_0285 "ribosome recycling f	0.976	0.902	0.360	3.3e-24

TAIR|locus:2082309 AT3G01800 [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 141/170 (82%), Positives = 163/170 (95%)

Query:     1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
             MEAAI ALSR+LTKLRTGRA+PGMLDHI+VETGGVKMPLNHLA+VSVLD KTLS+NPYDP
Sbjct:    97 MEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDP 156

Query:    61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
             +T+KELE AIV+SPLGLNP++DGQRL+A+IPALTKEHIQAMCK+V K+SE VKQSIRR+R
Sbjct:   157 DTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRAR 216

Query:   121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
             QKALD +KKAGSSLPKD++KRLEKEVDELTKK+VKSA+D+CK+KEKEI E
Sbjct:   217 QKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEITE 266

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006412 "translation" evidence=IEA;ISS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TIGR_CMR|GSU_1918 GSU_1918 "ribosome recycling factor" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 67/172 (38%), Positives = 108/172 (62%)

Query:     1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
             ME ++ +L RE  K+RTGRA+ G+LD I V+  G   PLN +A ++V + +T++I P++ 
Sbjct:    13 MEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITIQPWET 72

Query:    61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
               +  +E AI+++ LG  P  DG+ +  ++P LT+E  + + K + KT+ED K +IR  R
Sbjct:    73 KMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIAIRNIR 132

Query:   121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
             + A+D +KK      + +D +KR EKEV ++T  YV   D+V   KEKE+ E
Sbjct:   133 RDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEVLAHKEKEVME 184

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|CHY_1784 CHY_1784 "ribosome recycling factor" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 67/170 (39%), Positives = 104/170 (61%)

Query:     1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
             M+ AI  L +E   +R GRA+P +L+ ++VE  G +MP+N LA +S  + + L I P+D 
Sbjct:    13 MQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVIQPWDK 72

Query:    61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
               L  +E AI+ S LG+ P  DG  +  AIP LT+E  Q + KV  K +E+ + +IR  R
Sbjct:    73 GALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVAIRNIR 132

Query:   121 QKALDMMK--KAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
             + A D +K  +    + +D+ KR + EV +LT K++K+ D++ KAKE EI
Sbjct:   133 RDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLKAKEDEI 182

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|DET_0374 DET_0374 "ribosome recycling factor" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 66/172 (38%), Positives = 107/172 (62%)

Query:     1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
             M A++  LS+EL+ +RTGR+SP +++HI VE  GV  P+NHLA ++  D + ++I P+D 
Sbjct:    13 MAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWDR 72

Query:    61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
             + L  +E AI+ S LGL P  DG  +   IP L++E  Q M K+V+K  E+ K ++R  R
Sbjct:    73 SCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNVR 132

Query:   121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
             + A+D MKK   S  + +D +KR   ++ ++T  ++  AD +   KE E+ +
Sbjct:   133 RDAMDEMKKLEKSKEISQDDLKRGSDQLQKITDSFIAKADKLGADKETELKQ 184

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|BA_3962 BA_3962 "ribosome recycling factor" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 65/172 (37%), Positives = 103/172 (59%)

Query:     1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
             ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD 
Sbjct:    13 MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 72

Query:    61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
              ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R
Sbjct:    73 TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 132

Query:   121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
             +   D +KK      + +D ++   +++ + T KY+   D++ K KEKEI E
Sbjct:   133 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 184

GO:0006415 "translational termination" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

UNIPROTKB|P66734 frr "Ribosome-recycling factor" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 62/173 (35%), Positives = 105/173 (60%)

Query:     1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
             ME A+     +L+ +RTGRA+PGM   I ++  G   P+  LA ++V +++ + I PY+ 
Sbjct:    13 MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEA 72

Query:    61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
             N L+ +E+AI +S LG+NP  DG  +  A+P LT+E  + + K      E+ K S+R  R
Sbjct:    73 NQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIR 132

Query:   121 QKALDMM---KKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
             +KA++ +   +K G +  +D++ R EK++D+ T +YV   D++ K KE E+ E
Sbjct:   133 RKAMEELHRIRKEGEA-GEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE 184

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006415 "translational termination" evidence=IDA

GO:0008079 "translation termination factor activity" evidence=IDA

GO:0040007 "growth" evidence=IMP

DICTYBASE|DDB_G0268518 DDB_G0268518 "Ribosome-recycling factor, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 65/168 (38%), Positives = 99/168 (58%)

Query:     2 EAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPN 61
             +  I  +SREL  +R GR  P +L+ I VET    + L H+A++++ DS TL+I  YD +
Sbjct:    96 DKTIEYVSRELGNIRFGRVGPELLERINVETPSGNLLLPHMAMITIKDSLTLNITLYDSS 155

Query:    62 TLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
              L  +E A+ +S LGLNP+     +  ++P  T++  Q + K V   SED K SIRR R+
Sbjct:   156 LLSNVERALTNSGLGLNPQTFDTTIRVSLPKPTQDLRQKLIKQVNTISEDAKVSIRRHRK 215

Query:   122 KALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEIN 169
               +D++K+    L KD  K LEK + ++T  Y+KS   + + K KEIN
Sbjct:   216 DGMDILKRY--KLTKDDEKTLEKNIQKITDDYIKSITKITETKLKEIN 261

GO:0006412 "translation" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|SO_1632 SO_1632 "ribosome recycling factor" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 65/172 (37%), Positives = 98/172 (56%)

Query:     1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
             M   + A   ++ K+RTGRA P +LD I V   G   PLN +A V V D++TLS+  +D 
Sbjct:    13 MGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLSVTVFDR 72

Query:    61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
             + ++ +E AI+SS LGLNP   G  L   +PALT+E  +   KVV   +E  + +IR  R
Sbjct:    73 SAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVAIRNVR 132

Query:   121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
             + A+  +KK        +D ++R E EV + T  ++K  D++  AKE E+ E
Sbjct:   133 RDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEILAAKEIELME 184

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TAIR|locus:2077254 RRF ""ribosome recycling factor, chloroplast precursor"" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 64/171 (37%), Positives = 99/171 (57%)

Query:     1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
             ME  I  L      +RTGR++  MLD I VE  G  + L  +A +S  D  +L + PYD 
Sbjct:   103 MEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDK 162

Query:    61 NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVK---QSIR 117
             ++LK +E AIV+S LG+ P  DG  +  ++P LT +  + + KVVAK SE+ K   ++IR
Sbjct:   163 SSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIR 222

Query:   118 RSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
             R   K+ D ++K    L +D +K L  ++ +L   Y+K  +++ K KEKE+
Sbjct:   223 RDALKSYDKLEKE-KKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKEL 272

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0032544 "plastid translation" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TIGR_CMR|CJE_0285 CJE_0285 "ribosome recycling factor" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/169 (36%), Positives = 95/169 (56%)

Query:     2 EAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPN 61
             E ++ AL ++ T LRTG+ +  +LDHI V+  G + PLN +A V   D+ T+SI P++  
Sbjct:    14 EKSLEALKKDFTTLRTGKVNTHILDHITVDYYGTQTPLNQVATVLASDASTISITPWEKP 73

Query:    62 TLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQ 121
              LK +ESAI ++ +G+NP  DG+ +    P +T+E  +   K      E  K SIR  R+
Sbjct:    74 LLKTIESAIAAANIGVNPNNDGESVKLFFPPMTREQREENVKQAKAMGEKAKVSIRNIRK 133

Query:   122 KALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
              A D +KK     ++ +D+ K+   EV +LT  Y    D+  K KE E+
Sbjct:   134 DANDAVKKLEKDKAISEDEAKKAYDEVQKLTDTYTTKIDESVKNKESEL 182

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8MHH2	RRF_ALKOO	No assigned EC number	0.3895	0.9941	0.9189	yes	no
B1MZ62	RRF_LEUCK	No assigned EC number	0.4107	0.9766	0.9226	yes	no
Q3A398	RRF_PELCD	No assigned EC number	0.3953	0.9941	0.9189	yes	no
B1II63	RRF_CLOBK	No assigned EC number	0.4142	0.9824	0.9130	yes	no
P61304	RRF_GEOSL	No assigned EC number	0.3895	0.9941	0.9189	yes	no
Q185S5	RRF_CLOD6	No assigned EC number	0.3779	0.9941	0.9189	yes	no
Q9WX76	RRF_THET8	No assigned EC number	0.3882	0.9824	0.9081	yes	no
Q895K9	RRF_CLOTE	No assigned EC number	0.4166	0.9824	0.9180	yes	no
Q67PB4	RRF_SYMTH	No assigned EC number	0.4069	0.9941	0.9189	yes	no
P61303	RRF_CORDI	No assigned EC number	0.4012	0.9356	0.8648	yes	no
Q97I63	RRF_CLOAB	No assigned EC number	0.4352	0.9824	0.9081	yes	no
B8DSA1	RRF_DESVM	No assigned EC number	0.4244	0.9941	0.9139	yes	no
Q5WFT1	RRF_BACSK	No assigned EC number	0.4186	0.9941	0.9189	yes	no
A0LV51	RRF_ACIC1	No assigned EC number	0.3988	0.9883	0.9135	yes	no
A4J5Z0	RRF_DESRM	No assigned EC number	0.3846	0.9824	0.9130	yes	no
B8FGE3	RRF_DESAA	No assigned EC number	0.4104	0.9883	0.9135	yes	no
Q5L0J9	RRF_GEOKA	No assigned EC number	0.3953	0.9941	0.9189	yes	no
B1XJ13	RRF_SYNP2	No assigned EC number	0.3882	0.9824	0.9230	yes	no
B8FRG2	RRF_DESHD	No assigned EC number	0.4069	0.9941	0.9189	yes	no
A0LXJ3	RRF_GRAFK	No assigned EC number	0.375	0.9707	0.9071	yes	no
A9VT62	RRF_BACWK	No assigned EC number	0.3779	0.9941	0.9189	yes	no
Q24UG0	RRF_DESHY	No assigned EC number	0.4011	0.9941	0.9189	yes	no
Q72KE0	RRF_THET2	No assigned EC number	0.3882	0.9824	0.9081	yes	no
Q9RU82	RRF_DEIRA	No assigned EC number	0.3869	0.9766	0.9125	yes	no
A4IMC6	RRF_GEOTN	No assigned EC number	0.3953	0.9941	0.9189	yes	no
B1KWM1	RRF_CLOBM	No assigned EC number	0.4142	0.9824	0.9130	yes	no
Q2JHW2	RRF_SYNJB	No assigned EC number	0.4117	0.9824	0.9230	yes	no
Q65JJ6	RRF_BACLD	No assigned EC number	0.3953	0.9941	0.9189	yes	no
Q313G7	RRF_DESDG	No assigned EC number	0.4127	0.9941	0.9239	yes	no
Q3AB80	RRF_CARHZ	No assigned EC number	0.3941	0.9824	0.9081	yes	no
A1R4W2	RRF_ARTAT	No assigned EC number	0.4046	0.9883	0.9135	yes	no
Q3Z9H9	RRF_DEHE1	No assigned EC number	0.3837	0.9941	0.9189	yes	no
A8FDB6	RRF_BACP2	No assigned EC number	0.4011	0.9941	0.9189	yes	no
Q9KA66	RRF_BACHD	No assigned EC number	0.4302	0.9941	0.9189	yes	no
C5D9B8	RRF_GEOSW	No assigned EC number	0.3779	0.9941	0.9189	yes	no
A7Z4S3	RRF_BACA2	No assigned EC number	0.3953	0.9941	0.9189	yes	no
Q038L5	RRF_LACC3	No assigned EC number	0.3855	0.9590	0.8864	yes	no
B3WES5	RRF_LACCB	No assigned EC number	0.3855	0.9590	0.8864	yes	no
A7GRF4	RRF_BACCN	No assigned EC number	0.3837	0.9941	0.9189	yes	no
A1VFB2	RRF_DESVV	No assigned EC number	0.3941	0.9824	0.9032	yes	no
A7GG20	RRF_CLOBL	No assigned EC number	0.4082	0.9824	0.9130	yes	no
O86770	RRF_STRCO	No assigned EC number	0.3930	0.9883	0.9135	yes	no
C1FSK2	RRF_CLOBJ	No assigned EC number	0.4142	0.9824	0.9130	yes	no
B5EHV8	RRF_GEOBB	No assigned EC number	0.3837	0.9941	0.9189	yes	no
B8HL79	RRF_CYAP4	No assigned EC number	0.3859	0.9883	0.9285	yes	no
Q1IZI9	RRF_DEIGD	No assigned EC number	0.3928	0.9766	0.9125	yes	no
C3L0C9	RRF_CLOB6	No assigned EC number	0.4142	0.9824	0.9130	yes	no
P81101	RRF_BACSU	No assigned EC number	0.4127	0.9941	0.9189	yes	no
Q72DQ9	RRF_DESVH	No assigned EC number	0.3941	0.9824	0.9032	yes	no
Q8EQV0	RRF_OCEIH	No assigned EC number	0.3895	0.9941	0.9189	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam01765	165	pfam01765, RRF, Ribosome recycling factor	2e-62
PRK00083	185	PRK00083, frr, ribosome recycling factor; Reviewed	2e-56
COG0233	187	COG0233, Frr, Ribosome recycling factor [Translati	6e-51
cd00520	179	cd00520, RRF, Ribosome recycling factor (RRF)	1e-44
TIGR00496	176	TIGR00496, frr, ribosome recycling factor	2e-42

>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor

 Score =  189 bits (483), Expect = 2e-62
 Identities = 75/164 (45%), Positives = 110/164 (67%), Gaps = 2/164 (1%)

Query: 7   ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKEL 66
           AL +EL+K+RTGRA+P +LD I V+  G   PLN LA +SV +++TL I P+D + +K +
Sbjct: 1   ALKKELSKIRTGRANPSLLDGIRVDYYGSPTPLNQLASISVPEARTLLITPWDKSLIKAI 60

Query: 67  ESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDM 126
           E AI++S LGLNP+ DGQ +   IP LT+E  + + K   K +E+ K +IR  R+ A D 
Sbjct: 61  EKAILASDLGLNPQNDGQVIRIPIPPLTEERRKELVKQAKKLAEEAKVAIRNIRRDANDK 120

Query: 127 MKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           +KK      + +D++KR EKE+ +LT KY+K  D++ K KEKEI
Sbjct: 121 LKKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEKEI 164

The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis. Length = 165

>gnl|CDD|178850 PRK00083, frr, ribosome recycling factor; Reviewed

 Score =  174 bits (445), Expect = 2e-56
 Identities = 79/172 (45%), Positives = 111/172 (64%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME A+ AL REL K+RTGRA+P +LD I V+  G   PLN +A +SV +++TL I P+D 
Sbjct: 13  MEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + LK +E AI +S LGLNP  DG  +   IP LT+E  + + K V K +E+ K +IR  R
Sbjct: 73  SMLKAIEKAIRASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIR 132

Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A D +KK      + +D++KR E E+ +LT KY+K  D++  AKEKEI E
Sbjct: 133 RDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELLAAKEKEIME 184

Length = 185

>gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

 Score =  161 bits (409), Expect = 6e-51
 Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME A+ AL  EL+K+RTGRA+P +LD I VE  G   PLN LA +SV +++TL I P+D 
Sbjct: 15  MEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDK 74

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + +K +E AI++S LGLNP  DG  +   +P LT+E  + + KV  K +E+ K ++R  R
Sbjct: 75  SMVKAIEKAILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIR 134

Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A D +KK      + +D++K+ E+E+ +LT +Y+K  D++ K KEKEI
Sbjct: 135 RDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELLKDKEKEI 184

Length = 187

>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF)

 Score =  145 bits (367), Expect = 1e-44
 Identities = 71/170 (41%), Positives = 111/170 (65%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME ++ AL  EL K+RTGRA+P +LD I VE  G   PLN LA +SV + +T+ INP+D 
Sbjct: 9   MEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDK 68

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + +K +E AI++S LGLNP  DG  +   +P LT+E  + + K   K +E+ K +IR  R
Sbjct: 69  SAIKAIEKAILNSDLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIR 128

Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A D +KK      + +D++K+ E+++ +LT +Y+K  D++ K+KEKE+
Sbjct: 129 RDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKEL 178

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. Length = 179

>gnl|CDD|129587 TIGR00496, frr, ribosome recycling factor

 Score =  139 bits (352), Expect = 2e-42
 Identities = 71/170 (41%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ +I AL REL+K+RTGRA+P +LD I+VE  G   PL  LA V+V D++TL I P+D 
Sbjct: 4   MDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDK 63

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + +  +E AI  S LGLNP  DG  +    P LT+E  + + K   K +E  K ++R  R
Sbjct: 64  SNINAIEKAIQRSDLGLNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVR 123

Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A D +KK      + +D+ +RL++E+ +LT +Y+K  D++ K KEKE+
Sbjct: 124 RDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEILKDKEKEL 173

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily [Protein synthesis, Translation factors]. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
COG0233	187	Frr Ribosome recycling factor [Translation, riboso	100.0
PRK00083	185	frr ribosome recycling factor; Reviewed	100.0
TIGR00496	176	frr ribosome recycling factor. This model finds on	100.0
cd00520	179	RRF Ribosome recycling factor (RRF). Ribosome recy	100.0
PF01765	165	RRF: Ribosome recycling factor; InterPro: IPR02358	100.0
KOG4759	263	consensus Ribosome recycling factor [Translation,	100.0

>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-64  Score=397.77  Aligned_cols=170  Identities=44%  Similarity=0.686  Sum_probs=167.4

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|||||||++||+|.|+|||+++||+|||+|+++++|+|+|+|||++.+++|++||+.||||+||.
T Consensus        15 M~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~IekaI~~snLglnP~   94 (187)
T COG0233          15 MEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEKAILASNLGLNPN   94 (187)
T ss_pred             HHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHHHHHHcCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      +||+.|||+||++|+|+|++|+|.|++++|++|++|||+||++++.+||+.  +.||||+.++++++||++||+|+++||
T Consensus        95 ~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD  174 (187)
T COG0233          95 NDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKID  174 (187)
T ss_pred             cCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999985  459999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      ++++.||||||+
T Consensus       175 ~~~~~KEkEim~  186 (187)
T COG0233         175 ELLKDKEKEIME  186 (187)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999997

>PRK00083 frr ribosome recycling factor; Reviewed

Probab=100.00  E-value=5.9e-63  Score=393.46  Aligned_cols=170  Identities=46%  Similarity=0.681  Sum_probs=167.3

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+.+|+++|+||+||++||+|+|+|||+++||++||+|+++||++|+|+|||++++++|++||++||||+||+
T Consensus        13 m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI~~s~lgl~P~   92 (185)
T PRK00083         13 MEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAIRASDLGLNPS   92 (185)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHHHCCCCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      .||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++.  +++|||+.++++++||++||+|+++||
T Consensus        93 ~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQkltd~~i~~id  172 (185)
T PRK00083         93 NDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQKLTDKYIKKID  172 (185)
T ss_pred             cCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999973  569999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       173 ~~~~~Kekeim~  184 (185)
T PRK00083        173 ELLAAKEKEIME  184 (185)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999996

>TIGR00496 frr ribosome recycling factor

Probab=100.00  E-value=1e-62  Score=389.34  Aligned_cols=170  Identities=42%  Similarity=0.675  Sum_probs=167.4

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+||+||++||+|+|+|||+++||++||||++++|++|+|+|||++++++|++||++||||+||+
T Consensus         4 M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lglnP~   83 (176)
T TIGR00496         4 MDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLNPN   83 (176)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      .||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++++|+++  +++|||+.++++++||++||+|+++||
T Consensus        84 ~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id  163 (176)
T TIGR00496        84 NDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKKID  163 (176)
T ss_pred             cCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874  579999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       164 ~~~~~Kekeim~  175 (176)
T TIGR00496       164 EILKDKEKELME  175 (176)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999997

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.

>cd00520 RRF Ribosome recycling factor (RRF)

Probab=100.00  E-value=3.4e-61  Score=381.82  Aligned_cols=169  Identities=42%  Similarity=0.670  Sum_probs=166.4

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++||++|+|+|||++++++|++||++|+||+||+
T Consensus         9 m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s~l~l~P~   88 (179)
T cd00520           9 MEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNSDLGLNPN   88 (179)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      +||+.|+|+||+||+|+|++++|.||+++|+||++|||+|+++++++|+++  +.+|||+.++++++||++||+|++++|
T Consensus        89 ~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id  168 (179)
T cd00520          89 NDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKID  168 (179)
T ss_pred             cCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999985  459999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 030800          159 DVCKAKEKEIN  169 (171)
Q Consensus       159 ~l~~~KeKel~  169 (171)
                      ++++.||||||
T Consensus       169 ~~~~~Kekeim  179 (179)
T cd00520         169 ELLKSKEKELL  179 (179)
T ss_pred             HHHHHHHHhhC
Confidence            99999999997

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.

>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []

Probab=100.00  E-value=3.6e-56  Score=348.78  Aligned_cols=163  Identities=46%  Similarity=0.698  Sum_probs=157.2

Q ss_pred             HHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcccCCCeE
Q 030800            7 ALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRL   86 (171)
Q Consensus         7 ~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~~dg~~i   86 (171)
                      ||+++|+++|+||+||++||+|+|+|||+.+||++||||+++||++|+|+|||++++++|++||++|++|+||+.||+.|
T Consensus         1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i   80 (165)
T PF01765_consen    1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI   80 (165)
T ss_dssp             HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred             ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800           87 IAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAK  164 (171)
Q Consensus        87 ~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id~l~~~K  164 (171)
                      +|+||+||+|+|++++|.||+++|+||++||++|+++++.+|+++  +.+|+|+.++++++||++||+|++++|++++.|
T Consensus        81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k  160 (165)
T PF01765_consen   81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK  160 (165)
T ss_dssp             EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999985  459999999999999999999999999999999


Q ss_pred             HHhhh
Q 030800          165 EKEIN  169 (171)
Q Consensus       165 eKel~  169 (171)
                      |||||
T Consensus       161 ekell  165 (165)
T PF01765_consen  161 EKELL  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHhhC
Confidence            99997

Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....

>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.5e-48  Score=320.25  Aligned_cols=170  Identities=42%  Similarity=0.647  Sum_probs=167.7

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecC-CCcHHHHHHHHhcCCCCCCc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD-PNTLKELESAIVSSPLGLNP   79 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d-~~~i~~I~kAI~~s~l~~~p   79 (171)
                      |+++++.|+++|.++++||+||++||.|.|.+||.+.||++||+||.+||++|+|+||| |..|++|++||.+|+||+||
T Consensus        92 mek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn~~d~p~~ikai~kAI~~S~lnltP  171 (263)
T KOG4759|consen   92 MEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILINPFDFPVDIKAILKAIEASGLNLTP  171 (263)
T ss_pred             HHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEecccCchHHHHHHHHHHhCCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 030800           80 RVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADD  159 (171)
Q Consensus        80 ~~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id~  159 (171)
                      ++||..|+|+|||+|.|+|++++|.+++++|++|.+||++|+++++.+++.++.+++|++++++.++|+++|.|++++|+
T Consensus       172 ~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~~~~D~vkkae~~l~~l~k~~v~~ld~  251 (263)
T KOG4759|consen  172 NLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKSLSEDEVKKAEAELQKLAKDAVNKLDD  251 (263)
T ss_pred             CCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999877799999999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 030800          160 VCKAKEKEINE  170 (171)
Q Consensus       160 l~~~KeKel~~  170 (171)
                      +|+.|||||++
T Consensus       252 llkskeKellk  262 (263)
T KOG4759|consen  252 LLKSKEKELLK  262 (263)
T ss_pred             HHHHHHHHHhc
Confidence            99999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
1eh1_A	185	Ribosome Recycling Factor From Thermus Thermophilus		2e-28
4gfq_A	209	2.65 Angstrom Resolution Crystal Structure Of Ribos		1e-27
1wqf_A	185	Crystal Structure Of Ribosome Recycling Factor From		2e-26
1dd5_A	185	Crystal Structure Of Thermotoga Maritima Ribosome R		3e-24
1ek8_A	185	Crystal Structure Of The Ribosome Recycling Factor		2e-22
4gd1_Y	183	Structures Of The Bacterial Ribosome In Classical A		3e-22
1is1_A	185	Crystal Structure Of Ribosome Recycling Factor From		2e-21
1ise_A	185	Crystal Structure Of A Mutant Of Ribosome Recycling		2e-21
1ge9_A	184	Solution Structure Of The Ribosome Recycling Factor		2e-16

>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus Length = 185

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 2/170 (1%)
Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ ++  L   L  LRTGRA+P +L H+ VE  G  +PLN +A V+  D +TL +  +D 
Sbjct: 14  MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQ 73
Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N LK +E AI  S LGLNP   G  L   IP LT+E  + + + V + +E+ + +IR  R
Sbjct: 74  NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIR 133
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           ++ALD +KK      L +D+ KR E E+ ++T +++  AD + + KE+EI
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183

>pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome Recycling Factor (Frr) From Bacillus Anthracis Length = 209

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD 
Sbjct: 37  MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 96
Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
            ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R
Sbjct: 97  TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 156
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           +   D +KK      + +D ++   +++ + T KY+   D++ K KEKEI E
Sbjct: 157 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIME 208

>pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis Length = 185

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME A+     +L+ +RTGRA+PGM   I ++  G   P+  LA ++V +++ + I PY+ 
Sbjct: 13  MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEA 72
Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N L+ +E+AI +S LG+NP  DG  +  A+P LT+E  + + K      E+ K S+R  R
Sbjct: 73  NQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIR 132
Query: 121 QKALDMM---KKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           +KA++ +   +K G +  +D++ R EK++D+ T +YV   D++ K KE E+ E
Sbjct: 133 RKAMEELHRIRKEGEA-GEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGELLE 184

>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Recycling Factor, Rrf Length = 185

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+  +  +  EL K+RTG+ SP +L+ I V+  GV  P+N LA +S+ + +TL I P+D 
Sbjct: 13  MKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDK 72
Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + L  +E AI +S LGLNP  DG  +    P+ T E  +   K   +  E+ K +IR  R
Sbjct: 73  SVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIR 132
Query: 121 QKALDMMKKAGSS--LPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           ++ L  +K+      +P+D  KRLE E+ +LT ++++  D+V + K++EI E
Sbjct: 133 REILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIME 184

>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf) From Escherichia Coli Length = 185

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D 
Sbjct: 13  MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 72
Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +    +E AI++S LGLNP   G  +   +P LT+E  + + K+V   +E  + ++R  R
Sbjct: 73  SMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A D +K       + +D  +R + +V +LT   +K  +     KE E+
Sbjct: 133 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182

>pdb|4GD1|Y Chain Y, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 183

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D 
Sbjct: 13  MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 72
Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +    +E AI++S LGLNP   G  +   +P LT+E  + + K+V   +E  + ++R  R
Sbjct: 73  SMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A D +K       + +D  +R + +V +LT   +K  +     KE E+
Sbjct: 133 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182

>pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio Parahaemolyticus Length = 185

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ ++ AL   L+K+RTGRA P +L  I VE  G   PLN +A V   D++TL+I  +D 
Sbjct: 13  MDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDK 72
Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
              +++E AI+ S LGLNP   G  +   +P LT+E  + + K+V   +E  + ++R  R
Sbjct: 73  ELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIR 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A + +K       + +D+ ++ ++E+ +LT   VK  D+V  AKEKE+ E
Sbjct: 133 RDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKELME 184

>pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Escherichia Coli, Arg132gly Length = 185

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 2/170 (1%)
Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D 
Sbjct: 13  MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 72
Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +    +E AI++S LGLNP   G  +   +P LT+E  + + K+V   +E  + ++R   
Sbjct: 73  SMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVG 132
Query: 121 QKALDMMKK--AGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A D +K       + +D  +R + +V +LT   +K  +     KE E+
Sbjct: 133 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182

>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor Length = 184

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ A+     E+  LRT RAS  +++ I VE  G K+P+  L  +SV +   + I  +D 
Sbjct: 16  MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQ 75
Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N +  +E AI    L LNP V G  +   +P LT+E  + + +++ K +E+ +  +R  R
Sbjct: 76  NAVPAIEKAI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVR 134
Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           ++A +M+++    + +D+ KR  + + +LT KY+   + + +AKEKEI
Sbjct: 135 REAKEMIEEL-EGISEDEKKRALERLQKLTDKYIDEINKLMEAKEKEI 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	5e-55
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	5e-55
1wqg_A	185	Ribosome recycling factor; translation factor, tri	6e-55
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	6e-55
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	8e-55
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	8e-55
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	2e-53
1wih_A	84	Mitochondrial ribosome recycling factor; structura	4e-28
3lhp_S	123	4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun	3e-27
3lf9_A	121	4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu	1e-22

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis} Length = 209

 Score =  171 bits (436), Expect = 5e-55
 Identities = 64/170 (37%), Positives = 102/170 (60%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME A+ A SREL  +R GRAS  +LD + V+  G   P+  LA ++V +++ L I PYD 
Sbjct: 37  MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDK 96

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
            ++ ++E AI+ + LGLNP  DG  +  A PALT+E  + + KVV K +E+ K ++R  R
Sbjct: 97  TSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVR 156

Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           +   D +KK      + +D ++   +++ + T KY+   D++ K KEKEI
Sbjct: 157 RDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEI 206

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C Length = 185

 Score =  170 bits (434), Expect = 5e-55
 Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+  +  +  EL K+RTG+ SP +L+ I V+  GV  P+N LA +S+ + +TL I P+D 
Sbjct: 13  MKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + L  +E AI +S LGLNP  DG  +    P+ T E  +   K   +  E+ K +IR  R
Sbjct: 73  SVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIR 132

Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           ++ L  +K+      +P+D  KRLE E+ +LT ++++  D+V + K++EI E
Sbjct: 133 REILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIME 184

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A Length = 185

 Score =  170 bits (434), Expect = 6e-55
 Identities = 59/170 (34%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME A+     +L+ +RTGRA+PGM   I ++  G   P+  LA ++V +++ + I PY+ 
Sbjct: 13  MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEA 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N L+ +E+AI +S LG+NP  DG  +  A+P LT+E  + + K      E+ K S+R  R
Sbjct: 73  NQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIR 132

Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           +KA++ + +        +D++ R EK++D+ T +YV   D++ K KE E+
Sbjct: 133 RKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGEL 182

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G Length = 185

 Score =  170 bits (434), Expect = 6e-55
 Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ ++  L   L  LRTGRA+P +L H+ VE  G  +PLN +A V+  D +TL +  +D 
Sbjct: 14  MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQ 73

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N LK +E AI  S LGLNP   G  L   IP LT+E  + + + V + +E+ + +IR  R
Sbjct: 74  NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIR 133

Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           ++ALD +KK      L +D+ KR E E+ ++T +++  AD + + KE+EI
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8 Length = 185

 Score =  170 bits (433), Expect = 8e-55
 Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D 
Sbjct: 13  MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +    +E AI++S LGLNP   G  +   +P LT+E  + + K+V   +E  + ++R   
Sbjct: 73  SMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVG 132

Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           + A D +K       + +D  +R + +V +LT   +K  +     KE E+ +
Sbjct: 133 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELMQ 184

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y Length = 185

 Score =  170 bits (433), Expect = 8e-55
 Identities = 60/170 (35%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ ++ AL   L+K+RTGRA P +L  I VE  G   PLN +A V   D++TL+I  +D 
Sbjct: 13  MDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
              +++E AI+ S LGLNP   G  +   +P LT+E  + + K+V   +E  + ++R  R
Sbjct: 73  ELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIR 132

Query: 121 QKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A + +K       + +D+ ++ ++E+ +LT   VK  D+V  AKEKE+
Sbjct: 133 RDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKEL 182

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1 Length = 184

 Score =  166 bits (424), Expect = 2e-53
 Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 2/168 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ A+     E+  LRT RAS  +++ I VE  G K+P+  L  +SV +   + I  +D 
Sbjct: 16  MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQ 75

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N +  +E AI    L LNP V G  +   +P LT+E  + + +++ K +E+ +  +R  R
Sbjct: 76  NAVPAIEKAIREE-LNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVR 134

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           ++A +M+++    + +D+ KR  + + +LT KY+   + + +AKEKEI
Sbjct: 135 REAKEMIEELE-GISEDEKKRALERLQKLTDKYIDEINKLMEAKEKEI 181

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1 Length = 84

 Score = 99.3 bits (248), Expect = 4e-28
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 18 GRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD-PNTLKELESAIVSSPLG 76
          G +    LDHI V T   K+ LN +  +S+   + + +N    P        AI  S + 
Sbjct: 1  GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 77 LNPRVDGQRLIAAIPALTKE 96
          LNP V+G  +   IP +T  
Sbjct: 61 LNPEVEGTLIRVPIPKVTSG 80

>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8 Length = 123

 Score = 98.0 bits (245), Expect = 3e-27
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 52  TLSINPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSED 111
             SI+    +    ++ A+ +    L+      R +   P  T+E I+   K+V   +E 
Sbjct: 6   HGSISDIRKDAEVRMDKAVEAFKNKLDKFKAAVRKV--FP--TEERIKDWLKIVRGEAEQ 61

Query: 112 VKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEIN 169
            + ++R   + A D     G    +    + +   +V +LT   +K  +      E  + 
Sbjct: 62  ARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIEAALADMEAWLT 121

Query: 170 EG 171
           +G
Sbjct: 122 QG 123

>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene} Length = 121

 Score = 86.5 bits (215), Expect = 1e-22
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 55  INPYDPNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQ 114
           IN    +  + ++ ++ +    L+    G          T+E  + + K+V   +E  + 
Sbjct: 2   INEIKKDAQERMDKSVEALKNNLSKVRTG-------GGGTEERRKDLVKIVRGEAEGGRV 54

Query: 115 SIRRSRQKALDMMKKA--GSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           ++R   + A + +        +    + +   E+ +LT   VK  D+V  AKEKE+
Sbjct: 55  AVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKEL 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	100.0
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	100.0
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	100.0
1wqg_A	185	Ribosome recycling factor; translation factor, tri	100.0
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	100.0
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	100.0
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	100.0
1wih_A	84	Mitochondrial ribosome recycling factor; structura	100.0
3lhp_S	123	4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun	99.96
3lf9_A	121	4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu	99.96
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	85.78

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C

Probab=100.00  E-value=7.4e-66  Score=408.08  Aligned_cols=170  Identities=36%  Similarity=0.584  Sum_probs=167.4

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||+.|+||+||+
T Consensus        13 M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~   92 (185)
T 1dd5_A           13 MKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPI   92 (185)
T ss_dssp             HHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHHHSSSCCCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      +||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++.  +.+|||+.++++++||++||+|+++||
T Consensus        93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id  172 (185)
T 1dd5_A           93 NDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLD  172 (185)
T ss_dssp             ECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999974  469999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       173 ~~~~~KEkEim~  184 (185)
T 1dd5_A          173 EVFEIKKEEIME  184 (185)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999999997

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8

Probab=100.00  E-value=8.1e-66  Score=407.85  Aligned_cols=170  Identities=35%  Similarity=0.541  Sum_probs=167.3

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++|+||+||+
T Consensus        13 M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~   92 (185)
T 1ise_A           13 MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPN   92 (185)
T ss_dssp             HHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHHTTCTTCCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHHHHcCCCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      +||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++.  +.+|||+.++++++||++||+|+++||
T Consensus        93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id  172 (185)
T 1ise_A           93 SAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIE  172 (185)
T ss_dssp             ESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999974  469999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       173 ~~~~~KEkEim~  184 (185)
T 1ise_A          173 AALADKEAELMQ  184 (185)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999999996

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y

Probab=100.00  E-value=1.2e-65  Score=406.99  Aligned_cols=170  Identities=36%  Similarity=0.529  Sum_probs=167.3

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++|+||+||+
T Consensus        13 M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~   92 (185)
T 1is1_A           13 MDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPM   92 (185)
T ss_dssp             HHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHTTSSCCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      +||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++.  +.+|||+.++++++||++||+|+++||
T Consensus        93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id  172 (185)
T 1is1_A           93 SAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKID  172 (185)
T ss_dssp             EETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999973  469999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       173 ~~~~~KEkEim~  184 (185)
T 1is1_A          173 EVLAAKEKELME  184 (185)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999999997

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A

Probab=100.00  E-value=1.2e-65  Score=407.06  Aligned_cols=170  Identities=35%  Similarity=0.614  Sum_probs=167.3

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++|+||+||+
T Consensus        13 M~kai~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~   92 (185)
T 1wqg_A           13 MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPT   92 (185)
T ss_dssp             HHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHHHSTTCCCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHHHcCCCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      +||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++.  +.+|||+.++++++||++||+|+++||
T Consensus        93 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id  172 (185)
T 1wqg_A           93 NDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQID  172 (185)
T ss_dssp             ECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999973  469999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       173 ~~~~~KEkEim~  184 (185)
T 1wqg_A          173 ELVKHKEGELLE  184 (185)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999999996

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}

Probab=100.00  E-value=1.8e-65  Score=411.43  Aligned_cols=170  Identities=38%  Similarity=0.620  Sum_probs=167.5

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++|+++|+.+|++||+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++|+||+||+
T Consensus        37 M~kaie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI~~S~LglnP~  116 (209)
T 4gfq_A           37 MEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPS  116 (209)
T ss_dssp             HHHHHHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHHHHHTSSCCCE
T ss_pred             HHHHHHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHHHHcCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      +||+.|+|+||+||+|+|++|+|.|++.+|+||++|||+|+++++.+|+++  +.+|||+.++++++||++||+|+++||
T Consensus       117 ~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD  196 (209)
T 4gfq_A          117 NDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVD  196 (209)
T ss_dssp             ECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999974  579999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       197 ~~l~~KEkEim~  208 (209)
T 4gfq_A          197 EIAKNKEKEIME  208 (209)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcc
Confidence            999999999996

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G

Probab=100.00  E-value=9.3e-66  Score=407.51  Aligned_cols=170  Identities=39%  Similarity=0.617  Sum_probs=167.1

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||+.|+||+||+
T Consensus        14 M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~   93 (185)
T 1eh1_A           14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPS   93 (185)
T ss_dssp             HHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHHHSSSTTCCCEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCCHhHHHHHHHHHHHcCCCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      +||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++.  +.+|||+.++++++||++||+|+++||
T Consensus        94 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id  173 (185)
T 1eh1_A           94 NKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKAD  173 (185)
T ss_dssp             EETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999974  469999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       174 ~~~~~KEkEim~  185 (185)
T 1eh1_A          174 QLAEKKEQEILG  185 (185)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999999995

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1

Probab=100.00  E-value=4.2e-65  Score=403.44  Aligned_cols=168  Identities=32%  Similarity=0.538  Sum_probs=166.3

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+|||||++||+|+|+|||+++||+|||+|++++||+|+|+|||++++++|++||++ +||+||+
T Consensus        16 M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~-dLglnP~   94 (184)
T 1ge9_A           16 MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAIRE-ELNLNPT   94 (184)
T ss_dssp             HHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHHHH-HHCSCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHHHh-CCCCCcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDV  160 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id~l  160 (171)
                      +||+.|+|+||+||+|+|++++|.|++++|+||++|||+|+++++.+|++.+ +|||+.++++++||++||+|+++||++
T Consensus        95 ~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~k-iseD~~k~~e~~iQkltd~~i~~id~~  173 (184)
T 1ge9_A           95 VQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELEG-ISEDEKKRALERLQKLTDKYIDEINKL  173 (184)
T ss_dssp             EETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875 999999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 030800          161 CKAKEKEINE  170 (171)
Q Consensus       161 ~~~KeKel~~  170 (171)
                      +++||||||+
T Consensus       174 ~~~KEkEim~  183 (184)
T 1ge9_A          174 MEAKEKEIMS  183 (184)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            9999999996

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1

Probab=100.00  E-value=1.9e-36  Score=211.47  Aligned_cols=82  Identities=29%  Similarity=0.413  Sum_probs=80.7

Q ss_pred             CCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecC-CCcHHHHHHHHhcCCCCCCcccCCCeEEEeCCCCCHH
Q 030800           18 GRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD-PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKE   96 (171)
Q Consensus        18 gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d-~~~i~~I~kAI~~s~l~~~p~~dg~~i~v~iP~~T~E   96 (171)
                      |||||++||+|+|+|||+++||+|+|+|+++++|+|+|+||| ++++++|++||++|+||+||++||+.|||+||++|+|
T Consensus         1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeE   80 (84)
T 1wih_A            1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG   80 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred             CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChh
Confidence            899999999999999999999999999999999999999988 8999999999999999999999999999999999999


Q ss_pred             HHH
Q 030800           97 HIQ   99 (171)
Q Consensus        97 ~R~   99 (171)
                      +|+
T Consensus        81 rR~   83 (84)
T 1wih_A           81 PSS   83 (84)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            996

>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8

Probab=99.96  E-value=1.1e-29  Score=187.29  Aligned_cols=89  Identities=19%  Similarity=0.224  Sum_probs=84.0

Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      ..++.|+|+||  |+|+|++|+|.|++++|+||++|||+|+++++.+|++.  +.+|||+.++++++||++||+|+++||
T Consensus        33 ~~~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLTDkyIkkID  110 (123)
T 3lhp_S           33 KFKAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIE  110 (123)
T ss_dssp             HHHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999  99999999999999999999999999999999999983  469999999999999999999999999


Q ss_pred             HHHHHHHHhhhcC
Q 030800          159 DVCKAKEKEINEG  171 (171)
Q Consensus       159 ~l~~~KeKel~~~  171 (171)
                      +++++||||||+|
T Consensus       111 ~ll~~KEKEIm~~  123 (123)
T 3lhp_S          111 AALADMEAWLTQG  123 (123)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999998

>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}

Probab=99.96  E-value=3.7e-28  Score=177.92  Aligned_cols=80  Identities=26%  Similarity=0.288  Sum_probs=76.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030800           91 PALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI  168 (171)
Q Consensus        91 P~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id~l~~~KeKel  168 (171)
                      .|||+|+|++|+|.|++++|+||++|||+|+++++.+|++.  +.+|||+.++++++||++||+|+++||+++++|||||
T Consensus        31 ~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyIkkID~ll~~KEKEI  110 (121)
T 3lf9_A           31 GGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKEL  110 (121)
T ss_dssp             SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999999999999983  4699999999999999999999999999999999999


Q ss_pred             hc
Q 030800          169 NE  170 (171)
Q Consensus       169 ~~  170 (171)
                      |+
T Consensus       111 ~~  112 (121)
T 3lf9_A          111 ME  112 (121)
T ss_dssp             HC
T ss_pred             HH
Confidence            96

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=85.78  E-value=3.2  Score=28.56  Aligned_cols=57  Identities=11%  Similarity=0.212  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHH------HHHHHHHHHhcCCCCChHHHHH-HHHHHHHHHH
Q 030800           90 IPALTKEHIQAMCKVVAKTSEDVKQS-------IRRS------RQKALDMMKKAGSSLPKDQMKR-LEKEVDELTK  151 (171)
Q Consensus        90 iP~~T~E~R~~l~K~ak~~~e~~K~~-------iR~i------R~~~~~~lKk~~~~iseD~~~~-~~~~iq~ltd  151 (171)
                      +|..+.|.|+..++.+....++|..-       +|++      |..++.+|+..+     -++.+ ++.++++++|
T Consensus        24 ~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk-----~dl~~~lk~~lk~l~d   94 (97)
T 3onj_A           24 APSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK-----KTIQSDIKRPLQSLVD   94 (97)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHHHHHTHHHHHHHHH
T ss_pred             HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhh
Confidence            45778899999999999888888775       4444      555555665432     24444 5555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d1eh1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	5e-45
d1wqga1	183	d.67.3.1 (A:2-184) Ribosome recycling factor, RRF	1e-44
d1dd5a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	6e-43
d1is1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibr	4e-42
d1ek8a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Esch	4e-41
d1ge9a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Aqui	1e-40
d1wiha_	84	d.67.3.1 (A:) Ribosome recycling factor, RRF {Mous	2e-24

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

 Score =  144 bits (364), Expect = 5e-45
 Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ ++  L   L  LRTGRA+P +L H+ VE  G  +PLN +A V+  D +TL +  +D 
Sbjct: 14  MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQ 73

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N LK +E AI  S LGLNP   G  L   IP LT+E  + + + V + +E+ + +IR  R
Sbjct: 74  NALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIR 133

Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           ++ALD +KK      L +D+ KR E E+ ++T +++  AD + + KE+EI
Sbjct: 134 REALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKEQEI 183

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  143 bits (361), Expect = 1e-44
 Identities = 59/170 (34%), Positives = 101/170 (59%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           ME A+     +L+ +RTGRA+PGM   I ++  G   P+  LA ++V +++ + I PY+ 
Sbjct: 12  MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEA 71

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N L+ +E+AI +S LG+NP  DG  +  A+P LT+E  + + K      E+ K S+R  R
Sbjct: 72  NQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIR 131

Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           +KA++ + +        +D++ R EK++D+ T +YV   D++ K KE E+
Sbjct: 132 RKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGEL 181

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

 Score =  139 bits (351), Expect = 6e-43
 Identities = 62/172 (36%), Positives = 101/172 (58%), Gaps = 2/172 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+  +  +  EL K+RTG+ SP +L+ I V+  GV  P+N LA +S+ + +TL I P+D 
Sbjct: 12  MKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDK 71

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           + L  +E AI +S LGLNP  DG  +    P+ T E  +   K   +  E+ K +IR  R
Sbjct: 72  SVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIR 131

Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEINE 170
           ++ L  +K+      +P+D  KRLE E+ +LT ++++  D+V + K++EI E
Sbjct: 132 REILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEEIME 183

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

 Score =  137 bits (345), Expect = 4e-42
 Identities = 60/170 (35%), Positives = 99/170 (58%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ ++ AL   L+K+RTGRA P +L  I VE  G   PLN +A V   D++TL+I  +D 
Sbjct: 13  MDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDK 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
              +++E AI+ S LGLNP   G  +   +P LT+E  + + K+V   +E  + ++R  R
Sbjct: 73  ELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIR 132

Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A + +K       + +D+ ++ ++E+ +LT   VK  D+V  AKEKE+
Sbjct: 133 RDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKEL 182

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

 Score =  134 bits (339), Expect = 4e-41
 Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 2/170 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D 
Sbjct: 13  MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDR 72

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           +    +E AI++S LGLNP   G  +   +P LT+E  + + K+V   +E  + ++R  R
Sbjct: 73  SMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVR 132

Query: 121 QKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           + A D +K       + +D  +R + +V +LT   +K  +     KE E+
Sbjct: 133 RDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAEL 182

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

 Score =  133 bits (335), Expect = 1e-40
 Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 2/168 (1%)

Query: 1   MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDP 60
           M+ A+     E+  LRT RAS  +++ I VE  G K+P+  L  +SV +   + I  +D 
Sbjct: 16  MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQ 75

Query: 61  NTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSR 120
           N +  +E AI    L LNP V G  +   +P LT+E  + + +++ K +E+ +  +R  R
Sbjct: 76  NAVPAIEKAIR-EELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVR 134

Query: 121 QKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDVCKAKEKEI 168
           ++A +M+++    + +D+ KR  + + +LT KY+   + + +AKEKEI
Sbjct: 135 REAKEMIEEL-EGISEDEKKRALERLQKLTDKYIDEINKLMEAKEKEI 181

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 84

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

 Score = 88.7 bits (220), Expect = 2e-24
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 18 GRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD-PNTLKELESAIVSSPLG 76
          G +    LDHI V T   K+ LN +  +S+   + + +N    P        AI  S + 
Sbjct: 1  GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 77 LNPRVDGQRLIAAIPALTKE 96
          LNP V+G  +   IP +T  
Sbjct: 61 LNPEVEGTLIRVPIPKVTSG 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1is1a_	185	Ribosome recycling factor, RRF {Vibrio parahaemoly	100.0
d1wqga1	183	Ribosome recycling factor, RRF {Mycobacterium tube	100.0
d1dd5a_	184	Ribosome recycling factor, RRF {Thermotoga maritim	100.0
d1ek8a_	185	Ribosome recycling factor, RRF {Escherichia coli [	100.0
d1eh1a_	185	Ribosome recycling factor, RRF {Thermus thermophil	100.0
d1ge9a_	184	Ribosome recycling factor, RRF {Aquifex aeolicus [	100.0
d1wiha_	84	Ribosome recycling factor, RRF {Mouse (Mus musculu	99.97
d1iwga6	88	Multidrug efflux transporter AcrB TolC docking dom	80.47

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=100.00  E-value=2.2e-62  Score=387.30  Aligned_cols=170  Identities=36%  Similarity=0.529  Sum_probs=167.3

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++|+++|+++|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++||++|+||+||+
T Consensus        13 M~kai~~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI~~s~lglnp~   92 (185)
T d1is1a_          13 MDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPM   92 (185)
T ss_dssp             HHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHTTSSCCCE
T ss_pred             HHHHHHHHHHHHHHhhcCCCCHHHhCCeEEEECCCCccHHHHhhhccCCCceEEEEecccchHHHHHHHHHhcccccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      .||+.|+|+||+||+|+|++++|.||+++|+||++||++|+++++.+|++.  +++|+|+.++++++||++||+|+++||
T Consensus        93 ~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~k~~~iseD~~k~~~~~iq~ltd~~~~~id  172 (185)
T d1is1a_          93 SAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKID  172 (185)
T ss_dssp             EETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceeeecCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999873  679999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       173 ~~~~~KekEim~  184 (185)
T d1is1a_         173 EVLAAKEKELME  184 (185)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcc
Confidence            999999999996

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.3e-62  Score=385.75  Aligned_cols=170  Identities=35%  Similarity=0.614  Sum_probs=167.0

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++|+++|+.+|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++||++||||+||+
T Consensus        12 M~kai~~l~~el~~irtGRasp~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI~~s~lglnP~   91 (183)
T d1wqga1          12 MEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPT   91 (183)
T ss_dssp             HHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHHHSTTCCCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHhhhccCcceEEEeecchhhHHHHHHHHHHcCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      .||+.|+|+||+||+|+|++++|.||+++|+||++||++|+++++.+|+++  +.+|+|+.++++++||++||+|+++||
T Consensus        92 ~dg~~Irv~iP~lT~E~R~elvK~ak~~~E~aKv~iRniR~~~~~~lk~~~k~~~iseD~~~~~~~~iq~ltd~~~~~id  171 (183)
T d1wqga1          92 NDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQID  171 (183)
T ss_dssp             ECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874  569999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       172 ~~~~~KekEil~  183 (183)
T d1wqga1         172 ELVKHKEGELLE  183 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC
Confidence            999999999984

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.9e-62  Score=385.04  Aligned_cols=170  Identities=36%  Similarity=0.584  Sum_probs=167.4

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++||++|+||+||+
T Consensus        12 M~~ai~~l~~el~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~I~kAI~~s~lglnp~   91 (184)
T d1dd5a_          12 MKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPI   91 (184)
T ss_dssp             HHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHHHSSSCCCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHCceEEeeCCCcccHHHHhhhccCCcceeEeeccchhhHHHHHHHHHhcccCCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      .||+.|+|+||+||+|+|++++|.||+.+|+||++||++|+++++.+|+++  +++|||+.++++++||++||+|+++||
T Consensus        92 ~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~k~~~iseD~~k~~~~~iq~ltd~~~~~id  171 (184)
T d1dd5a_          92 NDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLD  171 (184)
T ss_dssp             ECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874  579999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       172 ~~~~~Kekeim~  183 (184)
T d1dd5a_         172 EVFEIKKEEIME  183 (184)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999999996

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.5e-62  Score=383.68  Aligned_cols=170  Identities=35%  Similarity=0.552  Sum_probs=167.5

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++|+++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++||++|+|+|||++.+++|++||++||||+||+
T Consensus        13 M~k~ie~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI~~s~lgl~p~   92 (185)
T d1ek8a_          13 MDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPN   92 (185)
T ss_dssp             HHHHHHHHHHHHHTCCCSSCCTTTTTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHHHTCSSCCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHhCeeEEeeCCCcccHHHHhhhccCcchheeeeechHhhHHHHHHHHHhccCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      .||+.|+|+||+||+|+|++++|.||+++|+||++||++|+++++.+|+++  +++|+|+.++++++||++||+|+++||
T Consensus        93 ~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~~kv~iR~iRr~~~~~ik~~~k~~~iseD~~k~~~~~iq~ltd~~~~~id  172 (185)
T d1ek8a_          93 SAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIE  172 (185)
T ss_dssp             EETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874  679999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++||||||+
T Consensus       173 ~~~~~Kekeil~  184 (185)
T d1ek8a_         173 AALADKEAELMQ  184 (185)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            999999999996

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.1e-62  Score=384.09  Aligned_cols=170  Identities=39%  Similarity=0.617  Sum_probs=167.2

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++++++|++||++|+||+||+
T Consensus        14 M~k~i~~l~~~l~~irtGra~p~lld~i~V~~~g~~~pL~~lA~Isv~~~~~l~I~~~D~~~v~~I~kAI~~s~l~l~p~   93 (185)
T d1eh1a_          14 MQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPS   93 (185)
T ss_dssp             HHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHHHSSSTTCCCEE
T ss_pred             HHHHHHHHHHHHHHhhcCCCCHHHcCCeEEeeCCCcccHHHHhhhccCCcceEEeeccchHHHHHHHHHHHhcCcccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAG--SSLPKDQMKRLEKEVDELTKKYVKSAD  158 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~--~~iseD~~~~~~~~iq~ltd~~i~~id  158 (171)
                      .||+.|+|+||+||+|+|++++|.||+.+|+||++||++|+++++.+|++.  +++|||+.++++++||++||+|++++|
T Consensus        94 ~dg~~Irv~iP~lT~E~R~elvK~~k~~~E~akv~iR~iR~~~~~~ikk~~k~~~iseD~~k~~~~eiq~ltd~~~~~id  173 (185)
T d1eh1a_          94 NKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKAD  173 (185)
T ss_dssp             EETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccceeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874  579999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 030800          159 DVCKAKEKEINE  170 (171)
Q Consensus       159 ~l~~~KeKel~~  170 (171)
                      +++++|||||||
T Consensus       174 ~~~~~KekEilg  185 (185)
T d1eh1a_         174 QLAEKKEQEILG  185 (185)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999996

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=1.4e-60  Score=376.69  Aligned_cols=168  Identities=32%  Similarity=0.542  Sum_probs=164.9

Q ss_pred             CHHHHHHHHHHHhhhccCCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecCCCcHHHHHHHHhcCCCCCCcc
Q 030800            1 MEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLNPR   80 (171)
Q Consensus         1 M~~~v~~l~~~l~~ir~gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d~~~i~~I~kAI~~s~l~~~p~   80 (171)
                      |++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|++++|++|+|+|||++.+++|++|| .|+||+||+
T Consensus        16 m~k~i~~l~~el~~irtGRasp~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~i~~~D~~~v~~IekAI-~s~lglnp~   94 (184)
T d1ge9a_          16 MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAI-REELNLNPT   94 (184)
T ss_dssp             HHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHH-HHHHCSCCE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHHhhcCCcceeeeecccHHHHHHHHHHH-hccCCCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999 569999999


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030800           81 VDGQRLIAAIPALTKEHIQAMCKVVAKTSEDVKQSIRRSRQKALDMMKKAGSSLPKDQMKRLEKEVDELTKKYVKSADDV  160 (171)
Q Consensus        81 ~dg~~i~v~iP~~T~E~R~~l~K~ak~~~e~~K~~iR~iR~~~~~~lKk~~~~iseD~~~~~~~~iq~ltd~~i~~id~l  160 (171)
                      .+|+.|+|+||+||+|+|++++|.||+.+|+||++||++|+++++.+|+++ ++|||+.++++++||++||+|++++|++
T Consensus        95 ~~g~~Iri~iP~lT~E~R~~lvK~ak~~~E~aKv~iRniR~~~~~~lKk~k-~iseD~~k~~~~~iqkltd~~~~~id~~  173 (184)
T d1ge9a_          95 VQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE-GISEDEKKRALERLQKLTDKYIDEINKL  173 (184)
T ss_dssp             EETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceeccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999984 6999999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 030800          161 CKAKEKEINE  170 (171)
Q Consensus       161 ~~~KeKel~~  170 (171)
                      +++||||||+
T Consensus       174 ~~~Kekeim~  183 (184)
T d1ge9a_         174 MEAKEKEIMS  183 (184)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcc
Confidence            9999999996

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

Probab=99.97  E-value=2e-33  Score=194.91  Aligned_cols=82  Identities=29%  Similarity=0.413  Sum_probs=80.0

Q ss_pred             CCCCcCCCcceEEeeCCccccccceeeEEecCCcEEEEeecC-CCcHHHHHHHHhcCCCCCCcccCCCeEEEeCCCCCHH
Q 030800           18 GRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYD-PNTLKELESAIVSSPLGLNPRVDGQRLIAAIPALTKE   96 (171)
Q Consensus        18 gr~~p~~ld~i~V~~~g~~~pL~~lA~I~v~~~~~l~I~p~d-~~~i~~I~kAI~~s~l~~~p~~dg~~i~v~iP~~T~E   96 (171)
                      |||||++||+|+|+|||+++||+|||+|+++++++|+|+||| ++.+++|++||++||||+||+.||+.|||+||+||.|
T Consensus         1 Gra~p~lld~I~V~~yg~~~pL~qlA~Isv~~~~~l~I~~~D~~~~~~~i~kAI~~S~LglnP~~dG~~Iri~iP~lT~~   80 (84)
T d1wiha_           1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG   80 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred             CCCChHHcCceEEEECCCcccHHHHhhhhcCCCceEEEEEeecccccHHHHHHHHhcCCCCCcccCCCEEEEECCCCCCC
Confidence            899999999999999999999999999999999999999999 8999999999999999999999999999999999998


Q ss_pred             HHH
Q 030800           97 HIQ   99 (171)
Q Consensus        97 ~R~   99 (171)
                      .|+
T Consensus        81 ~~~   83 (84)
T d1wiha_          81 PSS   83 (84)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            763

>d1iwga6 d.225.1.1 (A:725-812) Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
superfamily: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
family: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
domain: Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
species: Escherichia coli [TaxId: 562]

Probab=80.47  E-value=0.29  Score=31.06  Aligned_cols=30  Identities=17%  Similarity=0.237  Sum_probs=25.7

Q ss_pred             CCCCcCCCcceEEee-CCccccccceeeEEe
Q 030800           18 GRASPGMLDHIIVET-GGVKMPLNHLAVVSV   47 (171)
Q Consensus        18 gr~~p~~ld~i~V~~-~g~~~pL~~lA~I~v   47 (171)
                      .|.+++-|.++.|.. .|..+||++||+|..
T Consensus        55 ~r~~~~~L~~l~i~~~~G~~vpLs~va~v~~   85 (88)
T d1iwga6          55 YRMLPDDIGDWYVRAADGQMVPFSAFSSSRW   85 (88)
T ss_dssp             GSSSGGGGTTCEECCTTSCCEEGGGTCCEEE
T ss_pred             HcCCHHHHHhcccCCCCCCEEEhhHEEEEEE
Confidence            378999999999987 467899999999974