Citrus Sinensis ID: 030801

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MGKGNRSAAATAAAAAAFFLIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPGPASPGIYYNFFIHHMYSREGTLFIYF
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHcccccHHHHccccccccccccHHHHHHHcHHcccccccEEccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccHccHHEccccccccccccHHHHHHHHHccccHHHHHEEccccccccEEcHHHHHcccHHccccccccHHcccccccccccccccccccccccccEEEEEEEccccEEEEEc
Coil and Loop (DISEMBL)
MGKGNRSAAATAAAAAAFFLIMVSCigsssgqalapgpsmafgpspspeddcltkvlNMSDClsyvtegsnvtvpdkpccpelaglvesnpiclcqllgknntygikIDITralklpsvcgvttppvnlcslagvpieaptgspgpaspgiyyNFFIHHmysregtlfiyf
Flexible Loop (DISEMBL)
MGKGNRSAAATAAAAAAFFLIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTegsnvtvpdKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPGPASPGIYYNFFIHHMYSREGTLFIYF
Low Complexity Region (SEG)
MGKGNRSaaataaaaaaFFLIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEaptgspgpaspgIYYNFFIHHMYSREGTLFIYF
Disordered region (IsUnstruct)
***********AAAAAAFFLIMVSCIG************************CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEA*********PGIYYNFFIHHMYSREGTLFIY*
Disordered Region (DISOPRED)
*************AAAAFFLIMVSCIGSSSGQAL*********************VLNMSDCLSYVT******VP**PCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPV****************************FIHHMYSREGTLFIYF
Disordered Region (DISEMBL)
***********AAAAAAFFLIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPGPASPGIYYNFFIHHMYSREGTLFIYF
Disordered Region (DISPRO)
*******AAATAAAAAAFFLIMVSCIGSS********************DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLA****************GIYYNFFIHHMYSREGTLFIYF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKGNRSAAATAAAAAAFFLIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPGPASPGIYYNFFIHHMYSREGTLFIYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q9ZVC7	176	Xylogen-like protein 11 O	no	no	0.637	0.619	0.491	4e-19
Q8VYI9	182	Non-specific lipid-transf	no	no	0.666	0.626	0.359	2e-16
Q9ZQI8	169	Non-specific lipid-transf	no	no	0.549	0.556	0.421	9e-16
Q6ASY2	178	Non-specific lipid transf	no	no	0.532	0.511	0.368	4e-09

>sp|Q9ZVC7|XYP11_ARATH Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 75/114 (65%), Gaps = 5/114 (4%)

Query: 30  SGQAL-APGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVE 88
           SGQ+  AP P  A GPS SP + CL  +LN+SDC SYV  GSN   P+  CCPELAG+V+
Sbjct: 19  SGQSPPAPEPIAADGPS-SPVN-CLVSMLNVSDCFSYVQVGSNEIKPEAACCPELAGMVQ 76

Query: 89  SNPICLCQLLGKNNT--YGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAP 140
           S+P C+C L G   +  +G+K+D  RA +L ++CGV  P  +LCS+ G P  +P
Sbjct: 77  SSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFPTISP 130

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYI9|NLTL5_ARATH Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 66/114 (57%)

Query: 37  GPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQ 96
           G S     +P+P  DC T +LNM+DCLS+V+ G  V  P+  CC  L  +++++  CLC+
Sbjct: 28  GASHHHATAPAPSVDCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCE 87

Query: 97  LLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPGPASPG 150
               + + G+ ++IT+A  LP+ C +  P +  C L+  P  AP  +PG A+ G
Sbjct: 88  AFKSSASLGVTLNITKASTLPAACKLHAPSIATCGLSVAPSTAPGLAPGVAAAG 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQI8|NLTL2_ARATH Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 1/95 (1%)

Query: 51  DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDI 110
           DC + +LNM+DCLS+VT GS V  P+  CC  L  +V + P CLC+    + + G+ +D+
Sbjct: 26  DCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTLDL 85

Query: 111 TRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPG 145
           ++A  LPSVC V  PP   C L+ V  + P  +PG
Sbjct: 86  SKAASLPSVCKVAAPPSARCGLS-VSGDPPATAPG 119

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ASY2|NLTL1_ORYSJ Non-specific lipid transfer protein-like 1 OS=Oryza sativa subsp. japonica GN=LTPL1 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 39  SMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNV-TVPDKPCCPELAGLVESNPI--CLC 95
           + A  P+P+P  DC  + L ++DCL YVT G    + P K CC E+ G ++ +    CLC
Sbjct: 27  ATASSPAPAPAVDCTAEALKLADCLDYVTPGKTAPSRPSKLCCGEVKGALKDSAAVGCLC 86

Query: 96  QLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLC 130
                + T  + I+ITRAL LP+ CG      + C
Sbjct: 87  AAF-TSKTLPLPINITRALHLPAACGADASAFSKC 120

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
255561236	211	lipid binding protein, putative [Ricinus	0.654	0.530	0.666	7e-34
223029867	196	non-specific lipid-transfer protein-like	0.690	0.602	0.552	3e-32
225436039	202	PREDICTED: non-specific lipid-transfer p	0.672	0.569	0.6	4e-31
356574517	211	PREDICTED: non-specific lipid-transfer p	0.614	0.497	0.601	4e-30
388508148	200	unknown [Lotus japonicus]	0.654	0.56	0.598	4e-30
388496246	200	unknown [Lotus japonicus]	0.660	0.565	0.603	6e-30
351724697	216	uncharacterized protein LOC100306166 pre	0.596	0.472	0.640	7e-30
357462043	206	Non-specific lipid-transfer protein-like	0.654	0.543	0.568	1e-29
147827003	163	hypothetical protein VITISV_034012 [Viti	0.649	0.680	0.591	1e-28
115464583	210	Os05g0489200 [Oryza sativa Japonica Grou	0.578	0.471	0.601	2e-26

>gi|255561236|ref|XP_002521629.1| lipid binding protein, putative [Ricinus communis] gi|223539141|gb|EEF40736.1| lipid binding protein, putative [Ricinus communis]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 90/117 (76%), Gaps = 5/117 (4%)

Query: 38  PSMAFGPS-PSP-EDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLC 95
           P M  GPS P P  +DCLT +LNMSDCLSYVTE SNVTVPDK CCPELAGL++ NPICLC
Sbjct: 45  PEMPLGPSAPGPATNDCLTPLLNMSDCLSYVTESSNVTVPDKNCCPELAGLLDGNPICLC 104

Query: 96  QLLGKNN---TYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPGPASP 149
           QLLG +N   +YG KID+ RALKLPS+C V+TPPV+LCS+AG P+  P  S    SP
Sbjct: 105 QLLGNSNLTESYGFKIDVNRALKLPSICRVSTPPVSLCSVAGYPVPGPIASEASPSP 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223029867|gb|ACM78615.1| non-specific lipid-transfer protein-like protein [Tamarix hispida]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 91/123 (73%), Gaps = 5/123 (4%)

Query: 20  LIMVSCIGSSSGQAL-APGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKP 78
           ++ V   G   G  + APGP++  G +    + C+T + NMSDCLSY  +GSN+T PDKP
Sbjct: 21  MVTVEVRGQDGGSVVGAPGPAVDSGGA----NHCITALTNMSDCLSYAEKGSNLTKPDKP 76

Query: 79  CCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIE 138
           CCPELAGLV+SNPICLC+LLGK ++YG++ID+ RALKLP  C V TPP+++CS  G+P+ 
Sbjct: 77  CCPELAGLVDSNPICLCELLGKGSSYGLQIDLNRALKLPETCKVDTPPISMCSTVGIPVG 136

Query: 139 APT 141
           APT
Sbjct: 137 APT 139

Source: Tamarix hispida

Species: Tamarix hispida

Genus: Tamarix

Family: Tamaricaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436039|ref|XP_002275145.1| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 10/125 (8%)

Query: 27  GSSSGQALAPGPSMAF-----GPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCP 81
           G SS   +AP P M       GP+P+  DDC+T VLNMSDCLSYV EGSNVTVPDKPCCP
Sbjct: 36  GPSSYAGIAPAPYMGMPPEPMGPAPA-ADDCVTNVLNMSDCLSYVAEGSNVTVPDKPCCP 94

Query: 82  ELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLC--SLAGVPIEA 139
           ELAGL++S+P+CLC LLG  +TYG  +++T+AL LP VCGV TPP+++C  S  G P  +
Sbjct: 95  ELAGLLDSHPLCLCTLLGSASTYG--VNVTKALTLPGVCGVPTPPLSMCPGSPTGSPAGS 152

Query: 140 PTGSP 144
           P GSP
Sbjct: 153 PAGSP 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574517|ref|XP_003555393.1| PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Glycine max]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 87/113 (76%), Gaps = 8/113 (7%)

Query: 45  SPSPEDD-CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNT 103
           +P+PE + CL  + NMSDCL+YV +GS ++ PDK CCPELAGLV+SNPICLC++LGK ++
Sbjct: 35  APAPESNGCLMALANMSDCLTYVEDGSKLSKPDKGCCPELAGLVDSNPICLCEMLGKPDS 94

Query: 104 YGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPI-------EAPTGSPGPASP 149
            GIKID+ +ALKLPSVCGVTTPPV+ CS  GVP+       E P+ +PG  SP
Sbjct: 95  IGIKIDLNKALKLPSVCGVTTPPVSTCSAVGVPVSLPPSMSEGPSIAPGAFSP 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508148|gb|AFK42140.1| unknown [Lotus japonicus]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 86/117 (73%), Gaps = 5/117 (4%)

Query: 30  SGQALAPGPSMAFGPSPSPED-DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVE 88
           S Q+LAP  + A    PSP   DC T + N+SDCL++V  GSN+T PDK CCPE AGL+E
Sbjct: 27  SAQSLAPESASA----PSPAGVDCFTALTNVSDCLTFVEAGSNLTKPDKGCCPEFAGLIE 82

Query: 89  SNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPG 145
           SNPICLCQLLGK +  GIKI++ +A+KLPSVCGV TPPV+ CS+ GVP+  P  S G
Sbjct: 83  SNPICLCQLLGKPDFVGIKINLNKAIKLPSVCGVDTPPVSTCSVIGVPVSLPPSSEG 139

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496246|gb|AFK36189.1| unknown [Lotus japonicus]

 Score =  135 bits (340), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 86/116 (74%), Gaps = 3/116 (2%)

Query: 30  SGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES 89
           S Q+LAP    A  PSP+   DC T + N+SDCL++V  GSN+T PDK CCPE AGL+ES
Sbjct: 27  SAQSLAP--ESASAPSPA-GVDCFTALTNVSDCLTFVEAGSNLTKPDKGCCPEFAGLIES 83

Query: 90  NPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPTGSPG 145
           NPICLCQLLGK +  GIKI++ +A+KLPSVCGV TPPV+ CS+ GVP+  P  S G
Sbjct: 84  NPICLCQLLGKPDFVGIKINLNKAIKLPSVCGVDTPPVSTCSVIGVPVSLPPSSEG 139

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724697|ref|NP_001238602.1| uncharacterized protein LOC100306166 precursor [Glycine max] gi|255627749|gb|ACU14219.1| unknown [Glycine max]

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 81/103 (78%), Gaps = 1/103 (0%)

Query: 50  DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKID 109
           + CL  + NMSDCL+YV +GS +  PDK CCPELAGL++SNPICLC+LLGK ++ GIKID
Sbjct: 51  NGCLMALTNMSDCLTYVEDGSKLAKPDKGCCPELAGLIDSNPICLCELLGKPDSIGIKID 110

Query: 110 ITRALKLPSVCGVTTPPVNLCSLAGVPIEA-PTGSPGPASPGI 151
           + +ALKLPSVCGVTTPPV+ CS  GVP+   P+ S G  SPGI
Sbjct: 111 LNKALKLPSVCGVTTPPVSTCSAVGVPVSLPPSMSEGSLSPGI 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462043|ref|XP_003601303.1| Non-specific lipid-transfer protein-like protein [Medicago truncatula] gi|217069950|gb|ACJ83335.1| unknown [Medicago truncatula] gi|355490351|gb|AES71554.1| Non-specific lipid-transfer protein-like protein [Medicago truncatula] gi|388517453|gb|AFK46788.1| unknown [Medicago truncatula]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 88/116 (75%), Gaps = 4/116 (3%)

Query: 28  SSSGQALAPGPSMAFGPSPSPEDD-CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGL 86
           S++  A +P P  A   +PSP DD CL  + NMSDCL++V +GS +T PDK CCPELAGL
Sbjct: 26  SAAALAQSPAPETAV-LAPSPADDGCLMALTNMSDCLTFVEDGSKLTKPDKGCCPELAGL 84

Query: 87  VESNPICLCQLLGKN--NTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAP 140
           ++ NPICLC+LLG N  +++GIKI++ +ALKLP++CGVTTPPV+ CS  GVP+  P
Sbjct: 85  IDGNPICLCKLLGSNTADSFGIKINVNKALKLPTICGVTTPPVSACSAIGVPVSLP 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147827003|emb|CAN64411.1| hypothetical protein VITISV_034012 [Vitis vinifera]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 87/120 (72%), Gaps = 9/120 (7%)

Query: 27  GSSSGQALAPGPSMAF-----GPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCP 81
           G SS   + P P M       GP+P+  DDC T VLNMSDCLSYV EGSNVTVPDKPCCP
Sbjct: 16  GPSSYXGIXPAPYMGMPPEPMGPAPA-ADDCXTNVLNMSDCLSYVAEGSNVTVPDKPCCP 74

Query: 82  ELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVPIEAPT 141
           ELAGL++S+P+CLC LLG  +TYG  +++T+AL LP VCGV TPP+++C +   PI  PT
Sbjct: 75  ELAGLLDSHPLCLCTLLGSASTYG--VNVTKALTLPGVCGVPTPPLSMCPVL-YPIPRPT 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115464583|ref|NP_001055891.1| Os05g0489200 [Oryza sativa Japonica Group] gi|50511364|gb|AAT77287.1| unknown protein [Oryza sativa Japonica Group] gi|113579442|dbj|BAF17805.1| Os05g0489200 [Oryza sativa Japonica Group] gi|215697282|dbj|BAG91276.1| unnamed protein product [Oryza sativa Japonica Group] gi|218197010|gb|EEC79437.1| hypothetical protein OsI_20416 [Oryza sativa Indica Group] gi|222625463|gb|EEE59595.1| hypothetical protein OsJ_11907 [Oryza sativa Japonica Group]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 78/103 (75%), Gaps = 4/103 (3%)

Query: 49  EDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLL-GKNNTYGIK 107
           +  CLT +LNMSDCL+YV  GS    PDKPCCPELAGLVESNP+CLC+LL G  ++YGI 
Sbjct: 49  DQACLTALLNMSDCLTYVQNGSRARRPDKPCCPELAGLVESNPVCLCELLSGAGDSYGIA 108

Query: 108 IDITRALKLPSVCGVTTPPVNLCSLAG--VPIEAPTGSPGPAS 148
           +D +RAL LP++C V+TPPV+ C+  G  VP+  PT SP PA+
Sbjct: 109 VDYSRALALPAICRVSTPPVSTCAAFGFNVPM-GPTPSPSPAA 150

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2101044	193	LTPG2 "glycosylphosphatidylino	0.660	0.585	0.532	5.2e-26
TAIR|locus:2059242	176	AT2G27130 [Arabidopsis thalian	0.672	0.653	0.458	7.8e-23
TAIR|locus:2043750	169	XYP2 "xylogen protein 2" [Arab	0.485	0.491	0.433	8.6e-17
TAIR|locus:2077001	170	AT3G22600 [Arabidopsis thalian	0.502	0.505	0.426	2.9e-16
TAIR|locus:2164411	182	XYP1 "xylogen protein 1" [Arab	0.672	0.631	0.333	2.9e-16
TAIR|locus:2039366	183	AT2G48130 [Arabidopsis thalian	0.508	0.475	0.366	1.1e-14
TAIR|locus:2034325	256	AT1G36150 [Arabidopsis thalian	0.619	0.414	0.357	2.3e-14
TAIR|locus:2138586	208	AT4G08670 [Arabidopsis thalian	0.561	0.461	0.367	3.8e-14
TAIR|locus:505006466	156	AT4G14815 [Arabidopsis thalian	0.479	0.525	0.388	1.6e-13
UNIPROTKB|Q6ASY2	178	LTPL1 "Non-specific lipid tran	0.549	0.528	0.404	3.4e-13

TAIR|locus:2101044 LTPG2 "glycosylphosphatidylinositol-anchored lipid protein transfer 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 65/122 (53%), Positives = 78/122 (63%)

Query:    20 LIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVT--EGSNVTVPDK 77
             LI+ S  G  S Q +   PS   GPS +P  DC+  ++NM+ CLSYVT  EG     PDK
Sbjct:    11 LIVASLTGHVSAQ-MDMSPSS--GPSGAP--DCMANLMNMTGCLSYVTVGEGGGAAKPDK 65

Query:    78 PCCPELAGLVESNPICLCQLLGKNNT--YGIKIDITRALKLPSVCGVTTPPVNLCSLAGV 135
              CCP LAGLVES+P CLC LL  +     GIKID  +ALKLP VCGV TP  +LCSL G+
Sbjct:    66 TCCPALAGLVESSPQCLCYLLSGDMAAQLGIKIDKAKALKLPGVCGVITPDPSLCSLFGI 125

Query:   136 PI 137
             P+
Sbjct:   126 PV 127

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2059242 AT2G27130 [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 55/120 (45%), Positives = 78/120 (65%)

Query:    20 LIMVSCIGSSSGQAL-APGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKP 78
             ++++  +   SGQ+  AP P  A GPS SP + CL  +LN+SDC SYV  GSN   P+  
Sbjct:     9 VLLLLFLSLCSGQSPPAPEPIAADGPS-SPVN-CLVSMLNVSDCFSYVQVGSNEIKPEAA 66

Query:    79 CCPELAGLVESNPICLCQLLGKNNT--YGIKIDITRALKLPSVCGVTTPPVNLCSLAGVP 136
             CCPELAG+V+S+P C+C L G   +  +G+K+D  RA +L ++CGV  P  +LCS+ G P
Sbjct:    67 CCPELAGMVQSSPECVCNLYGGGASPRFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFP 126

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2043750 XYP2 "xylogen protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 36/83 (43%), Positives = 52/83 (62%)

Query:    51 DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDI 110
             DC + +LNM+DCLS+VT GS V  P+  CC  L  +V + P CLC+    + + G+ +D+
Sbjct:    26 DCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGSLGLTLDL 85

Query:   111 TRALKLPSVCGVTTPPVNLCSLA 133
             ++A  LPSVC V  PP   C L+
Sbjct:    86 SKAASLPSVCKVAAPPSARCGLS 108

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2077001 AT3G22600 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 38/89 (42%), Positives = 58/89 (65%)

Query:    47 SPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLL-GKNNTYG 105
             S +  C   +++MS CL+Y+T   N T P++ CC +L+ +V+S+P CLCQ+L G  +  G
Sbjct:    23 SAQSSCTNALISMSPCLNYIT--GNSTSPNQQCCNQLSRVVQSSPDCLCQVLNGGGSQLG 80

Query:   106 IKIDITRALKLPSVCGVTTPPVNLCSLAG 134
             I ++ T+AL LP  C V TPPV+ C+  G
Sbjct:    81 INVNQTQALGLPRACNVQTPPVSRCNTGG 109

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2164411 XYP1 "xylogen protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 39/117 (33%), Positives = 65/117 (55%)

Query:    20 LIMVSCIGSSSGQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPC 79
             L ++  +  SS   L  G S     +P+P  DC T +LNM+DCLS+V+ G  V  P+  C
Sbjct:    13 LFLIVLLSLSSVSVL--GASHHHATAPAPSVDCSTLILNMADCLSFVSSGGTVAKPEGTC 70

Query:    80 CPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVP 136
             C  L  +++++  CLC+    + + G+ ++IT+A  LP+ C +  P +  C L+  P
Sbjct:    71 CSGLKTVLKADSQCLCEAFKSSASLGVTLNITKASTLPAACKLHAPSIATCGLSVAP 127

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2039366 AT2G48130 [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 33/90 (36%), Positives = 53/90 (58%)

Query:    48 PEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKN-NTYGI 106
             P   C++ +  +S CLSY+T   N T P +PCC  L  +++S+P C+C  +       G+
Sbjct:    26 PSSSCVSTLTTLSPCLSYIT--GNSTTPSQPCCSRLDSVIKSSPQCICSAVNSPIPNIGL 83

Query:   107 KIDITRALKLPSVCGVTTPPVNLCSLAGVP 136
              I+ T+AL+LP+ C + TPP+  C+ A  P
Sbjct:    84 NINRTQALQLPNACNIQTPPLTQCNAATGP 113

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2034325 AT1G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 39/109 (35%), Positives = 58/109 (53%)

Query:    20 LIMVSCIGSSS--GQALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDK 77
             L++ S +  ++  G    P PSMA  P PS   DC + + +M DCLS++T GS    P K
Sbjct:    12 LLLSSSLSDAADFGSPSQP-PSMAPTPQPSNSTDCSSVIYSMVDCLSFLTVGSTDPSPTK 70

Query:    78 PCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPP 126
              CC  +  ++  +P CLC  L  +   G  +D T+AL +P +C V   P
Sbjct:    71 TCCVGVKTVLNYSPKCLCSALESSREMGFVLDDTKALAMPKICNVPIDP 119

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2138586 AT4G08670 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 36/98 (36%), Positives = 53/98 (54%)

Query:    36 PGPSMAFGPSPSPED-DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICL 94
             P  S    P+P P   DC T + +M DCL Y+  GSN T P+K CC  +  +++ NP C+
Sbjct:    31 PAKSPVGAPAPGPSSSDCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCI 90

Query:    95 CQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSL 132
             C  L      GI+++ TRAL  P  C ++  P + C +
Sbjct:    91 CAGLVSAGEMGIELNSTRALATPKACKLSIAPPH-CGI 127

GO:0005886 "plasma membrane" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:505006466 AT4G14815 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 33/85 (38%), Positives = 53/85 (62%)

Query:    47 SPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLL-GKNNTYG 105
             S +  C   +++M+ CLS++T+  N ++P + CC +LA +V  +  CLCQ+L G  +  G
Sbjct:    21 SAQSSCTNVLISMAPCLSFITQ--NTSLPSQQCCNQLAHVVRYSSECLCQVLDGGGSQLG 78

Query:   106 IKIDITRALKLPSVCGVTTPPVNLC 130
             I ++ T+AL LP  C V TPP + C
Sbjct:    79 INVNETQALALPKACHVETPPASRC 103

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

UNIPROTKB|Q6ASY2 LTPL1 "Non-specific lipid transfer protein-like 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 40/99 (40%), Positives = 54/99 (54%)

Query:    41 AFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNV-TVPDKPCCPELAG-LVESNPI-CLCQL 97
             A  P+P+P  DC  + L ++DCL YVT G    + P K CC E+ G L +S  + CLC  
Sbjct:    29 ASSPAPAPAVDCTAEALKLADCLDYVTPGKTAPSRPSKLCCGEVKGALKDSAAVGCLCAA 88

Query:    98 LGKNNTYGIKIDITRALKLPSVCGVTTPPVNLCSLAGVP 136
                + T  + I+ITRAL LP+ CG      + C LA  P
Sbjct:    89 F-TSKTLPLPINITRALHLPAACGADASAFSKC-LAPAP 125

GO:0032578 "aleurone grain membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
cd00010	63	cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit	5e-14
pfam14368	95	pfam14368, LTP_2, Probable lipid transfer	2e-11
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	2e-10
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	7e-09
cd04660	73	cd04660, nsLTP_like, nsLTP_like: Non-specific lipi	2e-04

>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

 Score = 62.8 bits (153), Expect = 5e-14
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 59  MSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIK-IDITRALKLP 117
           ++ CLSY+T G+  T P   CC  L  +V+S+P CLC  L       +   + TRAL LP
Sbjct: 1   LAPCLSYLTGGA--TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALP 58

Query: 118 SVCGV 122
           + CG+
Sbjct: 59  AACGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

>gnl|CDD|222713 pfam14368, LTP_2, Probable lipid transfer

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 33  ALAPGPSMAFGPSPSPEDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPI 92
           A+    + A  P+P+    C      +  CL Y         P   CC  L   V+++  
Sbjct: 3   AVLLASAAAAPPAPASAASCADS---LLPCLGYCYVNGTAA-PSPACCAALKAAVKADVP 58

Query: 93  CLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPP 126
           CLC L+      G  I++TRA+ LP  CG+T+PP
Sbjct: 59  CLCDLVTSPLAAGFGINLTRAVALPKACGLTSPP 92

The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways. Length = 95

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 52  CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIK-IDI 110
           C   +L ++ C  Y+  G  V  P + CC +L  L      C C  + +    GI+ I+ 
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQV--PSQQCCSQLRQL---QAQCRCTAI-RAIVLGIEGINP 54

Query: 111 TRALKLPSVCGVTTPPVNLC 130
             A  LPS+CGV  P    C
Sbjct: 55  QAAASLPSMCGVNVPYGIDC 74

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 50.1 bits (119), Expect = 7e-09
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 52  CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLG---KNNTYGIKI 108
           C   +L ++ CLSY+  GS    P + CC +L GL   +  C C  L            +
Sbjct: 1   CGQVLLQLAPCLSYLVGGSRGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGL 58

Query: 109 DITRALKLPSVCGVTTPPVN 128
           +   A  LPS CGV  P  +
Sbjct: 59  NAQNAASLPSACGVPPPYTD 78

Length = 79

>gnl|CDD|240018 cd04660, nsLTP_like, nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 58  NMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLP 117
            +++C  YVT  +    P + CC  L     ++  CLC+         I  D  +A+ LP
Sbjct: 7   LLAECQPYVTGPNPPPPPSRECCAALRR---ADLPCLCRYKTSLVLQII--DPDKAVYLP 61

Query: 118 SVCGVTTPPVN 128
           + CG+  PP +
Sbjct: 62  AKCGLPLPPSS 72

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	99.55
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	99.47
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	99.47
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	99.3
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	99.29
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	98.96
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	98.43
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	98.24
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	98.09

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=99.55  E-value=4e-15  Score=103.59  Aligned_cols=73  Identities=30%  Similarity=0.664  Sum_probs=60.4

Q ss_pred             chhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCCCCCCC
Q 030801           52 CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVNLC  130 (171)
Q Consensus        52 C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~Pp~s~C  130 (171)
                      |..++..|.+|++|+++++....|+..||++|+++   +..|+|.+++. ..+. .||.++|+.||++||+++++ ++|
T Consensus         1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~-~~~~-~i~~~~a~~Lp~~Cgv~~p~-~~C   73 (73)
T cd04660           1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTS-LVLQ-IIDPDKAVYLPAKCGLPLPP-SSC   73 (73)
T ss_pred             CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCC-Cccc-ccCHHHHHHHHHHcCCCCCC-CCC
Confidence            66677889999999998643346899999999985   56699999875 3333 38999999999999999998 877

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=99.47  E-value=4.5e-15  Score=106.34  Aligned_cols=78  Identities=44%  Similarity=0.933  Sum_probs=49.4

Q ss_pred             CCCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCCCCC
Q 030801           49 EDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTPPVN  128 (171)
Q Consensus        49 ~~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~Pp~s  128 (171)
                      ..+|.+++....+|+.|+.++   ..|+..||++++++.+.+..|||..+++....+++||.++++.||++||++.++ +
T Consensus        19 ~~~c~~~l~~c~~~~~~~~~~---~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~-~   94 (96)
T PF14368_consen   19 CCSCANSLLPCCPCLCYVTGG---PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPP-S   94 (96)
T ss_dssp             TTB-HCCCCHH--HHHHHCC--------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S---
T ss_pred             cchhHHHHhccccchhccCCC---CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCC-C
Confidence            467866654444458888743   689999999999998889999999998643245678999999999999999987 7


Q ss_pred             CC
Q 030801          129 LC  130 (171)
Q Consensus       129 ~C  130 (171)
                      +|
T Consensus        95 ~C   96 (96)
T PF14368_consen   95 KC   96 (96)
T ss_dssp             --
T ss_pred             CC
Confidence            76

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.47  E-value=3.5e-14  Score=101.86  Aligned_cols=78  Identities=32%  Similarity=0.658  Sum_probs=59.6

Q ss_pred             CchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccC-----CCceeceeccCCCccccc-cCHHHHhhhhcccCCCC
Q 030801           51 DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-----NPICLCQLLGKNNTYGIK-IDITRALKLPSVCGVTT  124 (171)
Q Consensus        51 ~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-----~~~CLC~~~~~~~~~gi~-in~trA~~LP~~Cgv~~  124 (171)
                      +|..++..|.+|++|+++++  ..|++.||++++++++.     +..|+|..+++. ..++. ||.+++++||++||+++
T Consensus         2 ~C~~v~~~l~~C~~y~~g~~--~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~-~~~~~~i~~~~a~~LP~~C~v~~   78 (89)
T cd01960           2 SCGQVTSLLAPCLGYLTGGG--PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSA-AAGISGLNPGRAAGLPGKCGVSI   78 (89)
T ss_pred             CHHHHHhhHHhHHHHHhCCC--CCCChHHhhhhHHHhhccCCCCchhhhhhccccc-ccccCCCCHHHHHhChHhcccCC
Confidence            69999999999999999864  67999999999999754     234555444432 22333 89999999999999997


Q ss_pred             C----CCCCCC
Q 030801          125 P----PVNLCS  131 (171)
Q Consensus       125 P----p~s~C~  131 (171)
                      +    +.+||+
T Consensus        79 ~~~i~~~~dC~   89 (89)
T cd01960          79 PYPISPSTDCS   89 (89)
T ss_pred             CCCCCCCCCCC
Confidence            6    345664

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=99.30  E-value=1.1e-12  Score=87.97  Aligned_cols=62  Identities=42%  Similarity=0.893  Sum_probs=51.1

Q ss_pred             cccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCcccccc-CHHHHhhhhcccCC
Q 030801           59 MSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKI-DITRALKLPSVCGV  122 (171)
Q Consensus        59 L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~i-n~trA~~LP~~Cgv  122 (171)
                      |.+|++|+++++  ..|+..||++++++.+.+..|||+.+++.......+ |.++++.||++||+
T Consensus         1 L~~C~~y~~~~~--~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv   63 (63)
T cd00010           1 LAPCLSYLTGGA--TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL   63 (63)
T ss_pred             CcchHHHHcCCC--CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence            589999999763  679999999999998888999999998642211123 79999999999996

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=99.29  E-value=2.2e-12  Score=88.73  Aligned_cols=61  Identities=30%  Similarity=0.643  Sum_probs=52.9

Q ss_pred             cccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCC
Q 030801           57 LNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTP  125 (171)
Q Consensus        57 ~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~P  125 (171)
                      .+|.+|++|++++   ..|+.+||+.|++    +..|||.++++ +.++..||.++|+.|+++||+++|
T Consensus         4 ~~L~~C~~ai~~~---~~Ps~~CC~~Lk~----~~~CLC~y~~~-p~l~~~i~~~~A~~l~~~Cgv~~P   64 (66)
T cd01959           4 TQLSPCLPAILGG---SPPSAACCAKLKE----QQSCLCQYAKN-PSLKQYVNSPNARKVLAACGVPYP   64 (66)
T ss_pred             hhcccCHHHHhCC---CCCCHHHHHHHhc----CCCCeeeeecC-ccHHhhcCcHHHHHHHHHcCCCCC
Confidence            5799999999975   5799999999999    45899999975 455556899999999999999986

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=98.96  E-value=8.2e-10  Score=74.89  Aligned_cols=75  Identities=39%  Similarity=0.782  Sum_probs=58.7

Q ss_pred             chhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccc----cCHHHHhhhhcccCCCCCCC
Q 030801           52 CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIK----IDITRALKLPSVCGVTTPPV  127 (171)
Q Consensus        52 C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~----in~trA~~LP~~Cgv~~Pp~  127 (171)
                      |...+..+.+|++|+++......|+..||++|+.+.  +..|+|.+++.. ..++.    ++..++..||+.||+..+. 
T Consensus         1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~-~~~~~~~~~~~~~~a~~lp~~C~~~~~~-   76 (79)
T smart00499        1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAA-VLGILEIPGVNAQNAASLPSACGVPPPY-   76 (79)
T ss_pred             ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcc-cccccchhhhhHHHHHhhHHhcCCCCCC-
Confidence            667777888999999875223578899999999986  788999998753 22222    5899999999999999864 


Q ss_pred             CCC
Q 030801          128 NLC  130 (171)
Q Consensus       128 s~C  130 (171)
                      +.|
T Consensus        77 ~~C   79 (79)
T smart00499       77 TDC   79 (79)
T ss_pred             CCC
Confidence            444

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=98.43  E-value=4e-09  Score=74.95  Aligned_cols=67  Identities=34%  Similarity=0.793  Sum_probs=53.2

Q ss_pred             cccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccc-----------cccCHHHHhhhhcccCCCCC
Q 030801           57 LNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYG-----------IKIDITRALKLPSVCGVTTP  125 (171)
Q Consensus        57 ~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~g-----------i~in~trA~~LP~~Cgv~~P  125 (171)
                      ..|.+|..|++++.  ..|+..||++|+++   +..|+|..+... ..+           ..++..+|..||+.||+.++
T Consensus        13 ~~l~~c~~~~~~~~--~~~~~~CC~~L~~l---~~~C~C~~i~~~-~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~   86 (90)
T PF00234_consen   13 VRLSPCLPYLQGGC--QQPSQQCCQQLRQL---DPQCRCEAIRQM-VRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPP   86 (90)
T ss_dssp             SHHHGGHHHHTTSS--SHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred             ccccccHHHHhccc--ccchHHHhHHHHHH---hHHhhCHHHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCC
Confidence            34899999999753  46889999999998   889999998743 122           25789999999999999986


Q ss_pred             CCCCC
Q 030801          126 PVNLC  130 (171)
Q Consensus       126 p~s~C  130 (171)
                      . ++|
T Consensus        87 ~-~~C   90 (90)
T PF00234_consen   87 Y-TDC   90 (90)
T ss_dssp             S-S-G
T ss_pred             C-CCC
Confidence            4 455

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=98.24  E-value=9.5e-07  Score=63.67  Aligned_cols=80  Identities=33%  Similarity=0.676  Sum_probs=63.7

Q ss_pred             CCchhhhcccccCHHHhhCCC--CCCCCCcchHHHHHhcccCC-CceeceeccCCCccccccCHHHHhh-hhcccCCCCC
Q 030801           50 DDCLTKVLNMSDCLSYVTEGS--NVTVPDKPCCPELAGLVESN-PICLCQLLGKNNTYGIKIDITRALK-LPSVCGVTTP  125 (171)
Q Consensus        50 ~~C~~~l~~L~pCl~yl~g~~--~~~~Ps~~CC~alk~l~~~~-~~CLC~~~~~~~~~gi~in~trA~~-LP~~Cgv~~P  125 (171)
                      ..|..+..+|..|.+.+....  ....|..+||+.++++.+.+ ..|||..++. +.+|+.+|....++ |-..||...|
T Consensus         2 ~~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaika-n~lgi~~~~pv~l~llln~CGk~~P   80 (85)
T cd01958           2 PTCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKA-NILGISINIPVALSLLLNSCGRNVP   80 (85)
T ss_pred             CCCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeec-cccCcccccChhHHHHHHHHcCcCC
Confidence            358888788999999884211  12457789999999998874 6899999985 67888888888888 7778999999


Q ss_pred             CCCCC
Q 030801          126 PVNLC  130 (171)
Q Consensus       126 p~s~C  130 (171)
                      ++++|
T Consensus        81 ~gf~C   85 (85)
T cd01958          81 PGFTC   85 (85)
T ss_pred             CCCcC
Confidence            88887

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=98.09  E-value=8.8e-07  Score=63.86  Aligned_cols=80  Identities=31%  Similarity=0.681  Sum_probs=61.3

Q ss_pred             CchhhhcccccCHHHhh--CCCCCCCCCcchHHHHHhcccCC-CceeceeccCCCccc-cccCHHHHhh-hhcccCCCCC
Q 030801           51 DCLTKVLNMSDCLSYVT--EGSNVTVPDKPCCPELAGLVESN-PICLCQLLGKNNTYG-IKIDITRALK-LPSVCGVTTP  125 (171)
Q Consensus        51 ~C~~~l~~L~pCl~yl~--g~~~~~~Ps~~CC~alk~l~~~~-~~CLC~~~~~~~~~g-i~in~trA~~-LP~~Cgv~~P  125 (171)
                      +|..+..+|..|.+.+.  +......+...||+.++++.+.+ ..|||..++. +.+| +++|....+. |-..||...|
T Consensus         1 ~CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika-~vlg~i~~~ipv~l~~lln~CGk~~p   79 (85)
T PF14547_consen    1 TCPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKA-NVLGLINVNIPVALNLLLNACGKTVP   79 (85)
T ss_pred             CCCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhh-hcccccccccccHHHHHHHHhCCcCc
Confidence            36767778999999882  11112346789999999998874 6799999885 5677 6666776776 8888999999


Q ss_pred             CCCCCC
Q 030801          126 PVNLCS  131 (171)
Q Consensus       126 p~s~C~  131 (171)
                      ++++|.
T Consensus        80 ~gf~C~   85 (85)
T PF14547_consen   80 SGFTCP   85 (85)
T ss_pred             CCCcCC
Confidence            999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	2e-06
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	2e-06
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	1e-04
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	5e-04
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	6e-04
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	6e-04

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana} Length = 77

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 59  MSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPS 118
           +++C   V+   N T P +PCC  L     ++  CLC            +D   A  LP 
Sbjct: 12  LNECKPAVS-KENPTSPSQPCCTALQH---ADFACLCGYKNSPWLGSFGVDPELASALPK 67

Query: 119 VCGVTTPP 126
            CG+   P
Sbjct: 68  QCGLANAP 75

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Length = 93

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 51  DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVE-----SNPICLCQLLGKNNTYG 105
            C      ++ C+SY       + P   CC  +  L       ++    C  L       
Sbjct: 3   SCGQVASAIAPCISYAR--GQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 106 IKIDITRALKLPSVCGVTTP 125
             ++   A  +PS CGV+ P
Sbjct: 61  SGLNAGNAASIPSKCGVSIP 80

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Length = 90

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 51  DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVE-----SNPICLCQLLGKNNTYG 105
           DC      +  CLSYV  G     P   CC  +  L       S+    C  L       
Sbjct: 2   DCGHVDSLVRPCLSYVQGGPG---PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI 58

Query: 106 IKIDITRALKLPSVCGVTTP 125
             ++   A  +P  CGV  P
Sbjct: 59  HNLNEDNARSIPPKCGVNLP 78

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Length = 91

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 51  DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVE-----SNPICLCQLLGKNNTYG 105
            C     N++ CL+Y+        P   CC  +  LV       +    C  L       
Sbjct: 3   TCGQVTSNLAPCLAYLRNTG----PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58

Query: 106 IKIDITRALKLPSVCGVTTP 125
             I++ +A  LPS CGV  P
Sbjct: 59  SGINLGKAAGLPSTCGVNIP 78

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Length = 91

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 51  DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES--NPICLCQLLGKNNTYGIKI 108
            C     N++ C+ ++ +G  V          +     +  +   +C  L         I
Sbjct: 2   TCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGI 61

Query: 109 DITRALKLPSVCGVTTP 125
           +   A  LP  CGV  P
Sbjct: 62  NPNNAEALPGKCGVNIP 78

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Length = 92

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 51  DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVE-----SNPICLCQLLGKNNTYG 105
            C     +++ C+ YV  G  V      CC  +  +        +    C  L + +   
Sbjct: 3   TCGQVSSSLAPCIPYVRGGGAVPPA---CCNGIRNVNNLARTTPDRQAACNCLKQLSASV 59

Query: 106 IKIDITRALKLPSVCGVTTP 125
             ++   A  LP  CGV+ P
Sbjct: 60  PGVNPNNAAALPGKCGVSIP 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	99.61
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	99.6
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	99.6
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	99.57
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	99.57
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	99.56
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	99.42
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	99.36
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	99.35
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	97.89
3ob4_A	500	Conglutin, maltose ABC transporter periplasmic pro	85.87

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=99.61  E-value=5.5e-17  Score=117.01  Aligned_cols=80  Identities=24%  Similarity=0.498  Sum_probs=66.2

Q ss_pred             CCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhccc-------CCCceeceeccCCCccccccCHHHHhhhhcccCC
Q 030801           50 DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVE-------SNPICLCQLLGKNNTYGIKIDITRALKLPSVCGV  122 (171)
Q Consensus        50 ~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~-------~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv  122 (171)
                      .+|.+++..|.||++|+++++  ..|++.||++|+++++       .+..|+|.+... ..++ .||.++|+.||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~--~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~-~~~~-~in~~~A~~LP~~C~v   77 (93)
T 1afh_A            2 ISCGQVASAIAPCISYARGQG--SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAA-AGVS-GLNAGNAASIPSKCGV   77 (93)
T ss_dssp             CSSHHHHHHHGGGHHHHTTSC--CSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH-TTST-TCCHHHHHHHHHHHHC
T ss_pred             CChHHHHHhccCcHHHHcCCC--CCChHHHHHHHHHHHHhhcCCCCCcccCEeecccc-cccc-CcCHHHHHHHHHHcCC
Confidence            579999999999999999864  5688899999999973       236899997643 3344 6899999999999999


Q ss_pred             CCC----CCCCCCCC
Q 030801          123 TTP----PVNLCSLA  133 (171)
Q Consensus       123 ~~P----p~s~C~~~  133 (171)
                      ++|    +.+||+++
T Consensus        78 ~~p~~is~~~dC~~v   92 (93)
T 1afh_A           78 SIPYTISTSTDCSRV   92 (93)
T ss_dssp             CCSSCCSTTCCSSSC
T ss_pred             CCCCCCCCCCCCccC
Confidence            887    45799875

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=99.60  E-value=3.6e-17  Score=118.31  Aligned_cols=81  Identities=27%  Similarity=0.556  Sum_probs=65.8

Q ss_pred             CCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccC-----CCceeceeccCCCccccccCHHHHhhhhcccCCCC
Q 030801           50 DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-----NPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTT  124 (171)
Q Consensus        50 ~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-----~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~  124 (171)
                      .+|.+++..|.||++|++++   ..|+..||+++++|++.     ++.|+|.-+++....+..||.++|.+||++|||++
T Consensus         2 isC~~v~~~L~pCl~Yv~g~---~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~   78 (93)
T 2ljo_A            2 ISCGAVTSDLSPCLTYLTGG---PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNI   78 (93)
T ss_dssp             CSSHHHHHHHHHHHHHHTTS---SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHhHHHHHcCC---CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCC
Confidence            68999999999999999986   35889999999999764     34677776654322334689999999999999999


Q ss_pred             C----CCCCCCCC
Q 030801          125 P----PVNLCSLA  133 (171)
Q Consensus       125 P----p~s~C~~~  133 (171)
                      |    +.+||+++
T Consensus        79 p~~Is~~~dC~~v   91 (93)
T 2ljo_A           79 PYKISTTTNCNTV   91 (93)
T ss_dssp             SSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCCC
Confidence            8    55799875

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=99.60  E-value=3.4e-17  Score=117.89  Aligned_cols=79  Identities=22%  Similarity=0.501  Sum_probs=65.8

Q ss_pred             CCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcc-------cCCCceeceeccCCCccccccCHHHHhhhhcccCC
Q 030801           50 DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLV-------ESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGV  122 (171)
Q Consensus        50 ~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~-------~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv  122 (171)
                      .+|.+++..|.||++|+++++   .|+..||++|++|+       +.+..|+|.+... +.++ .||.++|+.||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~---~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~-~~~~-~in~~~A~~LP~~Cgv   76 (92)
T 2alg_A            2 ITCGQVSSSLAPCIPYVRGGG---AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLS-ASVP-GVNPNNAAALPGKCGV   76 (92)
T ss_dssp             CCHHHHHHHHGGGHHHHHHCS---CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH-HHST-TCCHHHHHHHHHHTTC
T ss_pred             CChHHHHHhccCcHHHHcCCC---CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcc-cccC-ccChHHHHHHHHHcCC
Confidence            579999999999999999863   48889999999987       3457899997543 4454 6899999999999999


Q ss_pred             CCC----CCCCCCCC
Q 030801          123 TTP----PVNLCSLA  133 (171)
Q Consensus       123 ~~P----p~s~C~~~  133 (171)
                      ++|    +.+||+++
T Consensus        77 ~~p~~is~~~dC~~v   91 (92)
T 2alg_A           77 SIPYKISASTNCATV   91 (92)
T ss_dssp             CCSSCSSTTSCGGGC
T ss_pred             CCCCCCCCCCCCccC
Confidence            987    45799875

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=99.57  E-value=2.1e-16  Score=113.67  Aligned_cols=78  Identities=31%  Similarity=0.616  Sum_probs=64.4

Q ss_pred             CCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccC-------CCceeceeccCCCccccccCHHHHhhhhcccCC
Q 030801           50 DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-------NPICLCQLLGKNNTYGIKIDITRALKLPSVCGV  122 (171)
Q Consensus        50 ~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-------~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv  122 (171)
                      .+|.+++..|.||++|+++++  . |+ .||++|+++++.       +..|+|.+.. ...++ .||.++|+.||++||+
T Consensus         2 ~~C~~v~~~L~pCl~y~~~~~--~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~-~~~~~-~in~~~A~~LP~~C~v   75 (91)
T 1t12_A            2 ITCGQVTSNLAPCLAYLRNTG--P-LG-RCCGGVKALVNSARTTEDRQIACTCLKSA-AGAIS-GINLGKAAGLPSTCGV   75 (91)
T ss_dssp             CCHHHHHHHTHHHHHHHTTSS--C-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHH-HHHCT-TCCHHHHHHHHHHTTC
T ss_pred             CChHHHHHhccCcHHHHcCCC--C-hH-HHHHHHHHHHhhccCCCCCCccCCCcccc-ccccC-CcChhHHHHHHHHcCC
Confidence            579999999999999999864  4 88 999999999764       5799998532 23444 6899999999999999


Q ss_pred             CCC----CCCCCCCC
Q 030801          123 TTP----PVNLCSLA  133 (171)
Q Consensus       123 ~~P----p~s~C~~~  133 (171)
                      ++|    +.+||+++
T Consensus        76 ~~p~~is~~~dC~~v   90 (91)
T 1t12_A           76 NIPYKISPSTDCSKV   90 (91)
T ss_dssp             CCSSCSSSSSCCTTC
T ss_pred             CCCCCCCCCCCCccC
Confidence            887    45799875

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=99.57  E-value=1.7e-16  Score=113.92  Aligned_cols=79  Identities=28%  Similarity=0.472  Sum_probs=63.8

Q ss_pred             CCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccC-------CCceeceeccCCCccccccCHHHHhhhhcccCC
Q 030801           50 DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-------NPICLCQLLGKNNTYGIKIDITRALKLPSVCGV  122 (171)
Q Consensus        50 ~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-------~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv  122 (171)
                      .+|.+++..|.||++|+++++  . |+.+||++|+++++.       +..|+|.+... ..++ .||.++|+.||++||+
T Consensus         1 i~C~~v~~~L~pCl~y~~~~~--~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~-~~~~-~in~~~A~~LP~~C~v   75 (90)
T 1bwo_A            1 IDCGHVDSLVRPCLSYVQGGP--G-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIA-RGIH-NLNEDNARSIPPKCGV   75 (90)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCS--C-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH-TTCT-TCCHHHHHTHHHHHTC
T ss_pred             CCHHHHHHhhcccHHHHcCCC--C-CCHHHhHHHHHHHhhccCCCCCCccCcCccCch-hccC-CcCHHHHHHHHHHcCC
Confidence            369999999999999999863  3 999999999998742       46899975432 3343 6899999999999999


Q ss_pred             CCC----CCCCCCCC
Q 030801          123 TTP----PVNLCSLA  133 (171)
Q Consensus       123 ~~P----p~s~C~~~  133 (171)
                      ++|    +.+||+++
T Consensus        76 ~~p~~is~~~dC~~v   90 (90)
T 1bwo_A           76 NLPYTISLNIDCSRV   90 (90)
T ss_dssp             CCSSCCCTTCCGGGC
T ss_pred             CCCCCCCCCCCCCCC
Confidence            987    44688763

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=99.56  E-value=2.6e-16  Score=113.06  Aligned_cols=79  Identities=23%  Similarity=0.552  Sum_probs=64.4

Q ss_pred             CCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccC-------CCceeceeccCCCccccccCHHHHhhhhcccCC
Q 030801           50 DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-------NPICLCQLLGKNNTYGIKIDITRALKLPSVCGV  122 (171)
Q Consensus        50 ~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-------~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv  122 (171)
                      .+|.+++..|.||++|+++++  . |+..||++|+++++.       +..|+|.+.. ...++ .||.++|+.||++||+
T Consensus         1 i~C~~v~~~L~pCl~yv~~~~--~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~-~~~~~-~in~~~A~~LP~~Cgv   75 (91)
T 1siy_A            1 MTCGQVQGNLAQCIGFLQKGG--V-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAA-AGAVR-GINPNNAEALPGKCGV   75 (91)
T ss_dssp             CCTTTTHHHHHHHHHHHTSCS--C-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHH-TTCCS-SCCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhccCcHHHHhCCC--C-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCc-ccccC-CcCHHHHHHHHHHcCC
Confidence            369999999999999999863  3 999999999998643       4589998532 23443 5899999999999999


Q ss_pred             CCC----CCCCCCCC
Q 030801          123 TTP----PVNLCSLA  133 (171)
Q Consensus       123 ~~P----p~s~C~~~  133 (171)
                      ++|    +.+||+++
T Consensus        76 ~~p~~is~~~dC~~v   90 (91)
T 1siy_A           76 NIPYKISTSTNCNSI   90 (91)
T ss_dssp             CCSSCSCTTSCSSTT
T ss_pred             CCCCCCCCCCCCccC
Confidence            887    45799875

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=99.42  E-value=8.8e-15  Score=101.80  Aligned_cols=72  Identities=28%  Similarity=0.614  Sum_probs=59.8

Q ss_pred             CCCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCC--CccccccCHHHHhhhhcccCCCCCC
Q 030801           49 EDDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKN--NTYGIKIDITRALKLPSVCGVTTPP  126 (171)
Q Consensus        49 ~~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~--~~~gi~in~trA~~LP~~Cgv~~Pp  126 (171)
                      ..+|.+++.+|.+|++|+++++ ...|+..||++|++   .+..|||.++++.  ..+  .||.++|+.||++||+++|+
T Consensus         2 ~~~C~~~~~~L~pC~~yv~~~~-~~~Ps~~CC~~lk~---~~~~ClC~~~~~~~~~~~--gin~~~A~~LP~~Cgv~~p~   75 (77)
T 2rkn_A            2 IDLCGMSQDELNECKPAVSKEN-PTSPSQPCCTALQH---ADFACLCGYKNSPWLGSF--GVDPELASALPKQCGLANAP   75 (77)
T ss_dssp             CCBTTBCHHHHHHHGGGGBSSS-CCCCCHHHHHHHTT---CCHHHHHTTTTCHHHHHH--TBCHHHHHHHHHHTTCSCCC
T ss_pred             cchHHhHHHhHhhCHHHHcCCC-CCCCCHHHHHHHHh---cCcCCcCcccCCcchhhc--CcCHHHHHHHHHHcCCCCCC
Confidence            3679999999999999999742 35799999999998   3679999998742  233  47999999999999999863

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=99.36  E-value=6.4e-14  Score=95.34  Aligned_cols=61  Identities=30%  Similarity=0.614  Sum_probs=52.4

Q ss_pred             cccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCC
Q 030801           57 LNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTP  125 (171)
Q Consensus        57 ~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~P  125 (171)
                      ..|.||++|++++   ..|+.+||++|++    +..|+|.++++ ..++..||.++|+.||++||+++|
T Consensus         5 ~~L~pC~~~v~~~---~~Ps~~CC~~lk~----~~~ClC~~~k~-~~~~~~in~~~A~~Lp~~Cgv~~P   65 (67)
T 1n89_A            5 SQLAVCASAILSG---AKPSGECCGNLRA----QQGCFCQYAKD-PTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             STTHHHHHHHTTC---CCCCHHHHHHHHH----HSSHHHHGGGC-STTHHHHTCHHHHHHHHHHTSCCS
T ss_pred             hhcccCHHHHcCC---CCCCHHHHHhhCC----CCCCCCccccC-cccccccCHHHHHHHHHHcCCCCC
Confidence            5789999999975   3699999999998    47999998876 444556899999999999999986

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=99.35  E-value=7e-14  Score=95.66  Aligned_cols=61  Identities=28%  Similarity=0.631  Sum_probs=52.4

Q ss_pred             cccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCC
Q 030801           57 LNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTP  125 (171)
Q Consensus        57 ~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~P  125 (171)
                      ++|.||++|++++   ..|+.+||++|++    +..|+|.++++ ..++..||.++|+.||++||+++|
T Consensus         6 ~~L~pC~~~v~~~---~~Ps~~CC~~lk~----~~~ClC~~~k~-~~~~~~in~~~A~~Lp~~Cgv~~P   66 (69)
T 1l6h_A            6 GQLTVCTGAIAGG---ARPTAACCSSLRA----QQGCFCQFAKD-PRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             TTHHHHHHHHTTC---CSTTHHHHHHHHH----HHHHHHHHTTC-SSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             hhcccCHHHHcCC---CCCCHHHHHhhCC----CCCCCCccccC-cccccccCHHHHHHHHHHcCCCCC
Confidence            5789999999975   3699999999998    47999998876 444556899999999999999985

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=97.89  E-value=1.9e-06  Score=60.32  Aligned_cols=68  Identities=28%  Similarity=0.637  Sum_probs=55.4

Q ss_pred             ccccCHHHhhCCCCCCCCCcchHHHHHhcccC-CCceeceeccCCCccccccCHHHHhh-hhcccCCCCCCCCCCCC
Q 030801           58 NMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-NPICLCQLLGKNNTYGIKIDITRALK-LPSVCGVTTPPVNLCSL  132 (171)
Q Consensus        58 ~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-~~~CLC~~~~~~~~~gi~in~trA~~-LP~~Cgv~~Pp~s~C~~  132 (171)
                      +|..|.+.+.+.   ..+...||+-++++.+. ...|||..++   .+|+ +|.+.+++ |.+.||...|++++|..
T Consensus        10 kLgvCanvL~g~---~~~~~~CC~Ll~GL~dleAAvCLCtaik---~Lgi-lnlpv~L~llln~Cgk~~P~gF~C~~   79 (80)
T 1hyp_A           10 DLSICLNILGGS---LGTVDDCCALIGGLGDIEAIVCLCIQLR---ALGI-LNLNRNLQLILNSCGRSYPSNATCPR   79 (80)
T ss_dssp             CCGGGGGGGGTC---CTTHHHHHHHHHTSCHHHHHHHHHHHHH---HHTC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhHHHHHhCcC---CCCCCccchhhhCcchhhhhhhhhhhcc---ccce-eecChhHHHHHHHhCCcCcCCCCCCC
Confidence            588999988542   23667899999999877 4689999886   3677 78888888 67799999999999963

>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}

Probab=85.87  E-value=0.041  Score=48.34  Aligned_cols=52  Identities=31%  Similarity=0.700  Sum_probs=34.8

Q ss_pred             cchHHHHHhcccCCCceeceeccCC--Cc--------cccccCHHHHhhhhcccCCCCCCCCCCCC
Q 030801           77 KPCCPELAGLVESNPICLCQLLGKN--NT--------YGIKIDITRALKLPSVCGVTTPPVNLCSL  132 (171)
Q Consensus        77 ~~CC~alk~l~~~~~~CLC~~~~~~--~~--------~gi~in~trA~~LP~~Cgv~~Pp~s~C~~  132 (171)
                      .+||+.|+.+.+ ++.|.|..+...  ..        ..-.+ ..+|..||..||+..|  ..|+-
T Consensus       429 ~~cc~~l~~~~~-~~~c~c~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~p~~c~~~~~--~~c~~  490 (500)
T 3ob4_A          429 ERCCNELNEFEN-NQRCMCEALQQIMENQSDRLQGRQQEQQF-KRELRNLPQQCGLRAP--QRCDL  490 (500)
T ss_dssp             HHHHHHHGGGTT-CHHHHHHHHHHHHHHHHTTCCSSHHHHHH-HHHHHTHHHHTTCCCC--SCCCC
T ss_pred             HHHHHHHHhCCc-ccccccHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhCchhcCCCCC--ccCCc
Confidence            689999999721 179999987542  00        00112 3458899999999853  46873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d1mida_	91	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	5e-15
d1fk5a_	93	a.52.1.1 (A:) Plant non-specific lipid-transfer pr	1e-11

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 91

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 64.9 bits (158), Expect = 5e-15
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 51  DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES--NPICLCQLLGKNNTYGIKI 108
           +C      M  CL+YV  G   +        +L    +S  +   +C  L         +
Sbjct: 2   NCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNL 61

Query: 109 DITRALKLPSVCGVTTP 125
           ++  A  +PS C V  P
Sbjct: 62  NLNNAASIPSKCNVNVP 78

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Length = 93

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

 Score = 55.6 bits (134), Expect = 1e-11
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 51  DCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVE-----SNPICLCQLLGKNNTYG 105
            C      ++ C+SY     +   P   CC  +  L       ++    C  L       
Sbjct: 3   SCGQVASAIAPCISYARGQGSG--PSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60

Query: 106 IKIDITRALKLPSVCGVTTP 125
             ++   A  +PS CGV+ P
Sbjct: 61  SGLNAGNAASIPSKCGVSIP 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	99.58
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	99.56
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	99.01
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	98.94
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	97.66
g1pnb.1	106	Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}	88.97
d1psya_	125	2S albumin RicC3 {Castor bean (Ricinus communis) [	86.26
d1s6da_	103	Methionine-rich 2S protein (albumin 8) {Common sun	80.84

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.58  E-value=3.7e-17  Score=116.32  Aligned_cols=82  Identities=23%  Similarity=0.460  Sum_probs=65.9

Q ss_pred             CCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccC-----CCceeceeccCCCccccccCHHHHhhhhcccCCCC
Q 030801           50 DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-----NPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTT  124 (171)
Q Consensus        50 ~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-----~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~  124 (171)
                      .+|.+++..|.||++|+++++  ..|++.||+++++|++.     ++.|+|.-+++....+.+||.+|+.+||++||+++
T Consensus         2 i~C~~v~~~l~pCl~Yltg~~--~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~l   79 (93)
T d1fk5a_           2 ISCGQVASAIAPCISYARGQG--SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSI   79 (93)
T ss_dssp             CCHHHHHHHHGGGHHHHTTCS--SSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHhhhhHHHHhCCC--CCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCCC
Confidence            689999999999999999864  57999999999999763     45577766654322233689999999999999988


Q ss_pred             C----CCCCCCCC
Q 030801          125 P----PVNLCSLA  133 (171)
Q Consensus       125 P----p~s~C~~~  133 (171)
                      +    +.+||+++
T Consensus        80 ~~pis~~~dCs~i   92 (93)
T d1fk5a_          80 PYTISTSTDCSRV   92 (93)
T ss_dssp             SSCCSTTCCGGGC
T ss_pred             CCCCCCCCCCCcC
Confidence            7    55799875

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.56  E-value=5.8e-17  Score=114.93  Aligned_cols=81  Identities=27%  Similarity=0.490  Sum_probs=65.2

Q ss_pred             CCchhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccC-----CCceeceeccCCCccccccCHHHHhhhhcccCCCC
Q 030801           50 DDCLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-----NPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTT  124 (171)
Q Consensus        50 ~~C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-----~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~  124 (171)
                      .+|.+++..|.||++|++++   ..|+..||+++++|++.     +..|+|+.+++....+..||.+|+.+||++||+++
T Consensus         1 i~C~~v~~~l~pCl~Yl~g~---~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~~   77 (91)
T d1mida_           1 LNCGQVDSKMKPCLTYVQGG---PGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNV   77 (91)
T ss_dssp             CCHHHHHHHHGGGHHHHTTC---SCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHhhHHHHcCC---CCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCCC
Confidence            47999999999999999975   36999999999999763     34677777664322233589999999999999998


Q ss_pred             C----CCCCCCCC
Q 030801          125 P----PVNLCSLA  133 (171)
Q Consensus       125 P----p~s~C~~~  133 (171)
                      |    +.+||+++
T Consensus        78 p~pis~~~dC~~i   90 (91)
T d1mida_          78 PYTISPDIDCSRI   90 (91)
T ss_dssp             CSCCCTTCCGGGC
T ss_pred             CCCCCCCCCCCCC
Confidence            8    45799875

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=99.01  E-value=2.8e-11  Score=80.77  Aligned_cols=61  Identities=30%  Similarity=0.614  Sum_probs=55.0

Q ss_pred             cccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCC
Q 030801           57 LNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTP  125 (171)
Q Consensus        57 ~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~P  125 (171)
                      ..|.+|++.++++   ..||..||+.|++    |..|||+++++ +.+...||..+|..+.+.|||++|
T Consensus         5 ~~L~~C~~Ai~~g---~~PS~~CC~kLke----Q~~ClC~Y~kd-P~~~~yv~spnarkv~~aCgvp~P   65 (67)
T d1tuka1           5 SQLAVCASAILSG---AKPSGECCGNLRA----QQGCFCQYAKD-PTYGQYIRSPHARDTLTSCGLAVP   65 (67)
T ss_dssp             GGGGGGHHHHHHC---CCCCHHHHHHHHH----HGGGHHHHTTC-TTTHHHHTSHHHHHHHHHTTCCCC
T ss_pred             hhccccHHHHhcC---CCCcHHHHHHHHh----cCCccceecCC-ccHHHHcCCHHHHHHHHhcCCCCC
Confidence            4699999999986   4799999999999    78999999996 667668999999999999999996

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.94  E-value=3.2e-11  Score=80.92  Aligned_cols=64  Identities=28%  Similarity=0.649  Sum_probs=56.2

Q ss_pred             chhhhcccccCHHHhhCCCCCCCCCcchHHHHHhcccCCCceeceeccCCCccccccCHHHHhhhhcccCCCCC
Q 030801           52 CLTKVLNMSDCLSYVTEGSNVTVPDKPCCPELAGLVESNPICLCQLLGKNNTYGIKIDITRALKLPSVCGVTTP  125 (171)
Q Consensus        52 C~~~l~~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~~~~CLC~~~~~~~~~gi~in~trA~~LP~~Cgv~~P  125 (171)
                      |+.  ..|.+|++.++++   ..||..||+.|++    |..|||+++++ +.++..||..++..+...|||++|
T Consensus         3 C~p--~~L~~C~~ai~~g---~~PS~~CC~kLke----Q~~ClC~Y~k~-P~~~~yv~spnarkv~~aCgvp~P   66 (69)
T d1l6ha_           3 CNA--GQLTVCTGAIAGG---ARPTAACCSSLRA----QQGCFCQFAKD-PRYGRYVNSPNARKAVSSCGIALP   66 (69)
T ss_dssp             STT--TTHHHHHHHHTTC---CSTTHHHHHHHHH----HHHHHHHHTTC-SSHHHHTTTTTGGGCCCCCSSCSC
T ss_pred             CCh--hhccccHHHHhCC---CCCcHHHHHHHHh----cCCccceeccC-ccHHHHcCCHHHHHHHHhcCCCCC
Confidence            544  4699999999986   4799999999999    77899999986 667668999999999999999997

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=97.66  E-value=3.1e-06  Score=56.90  Aligned_cols=68  Identities=28%  Similarity=0.632  Sum_probs=53.8

Q ss_pred             ccccCHHHhhCCCCCCCCCcchHHHHHhcccC-CCceeceeccCCCccccccCHHHHhh-hhcccCCCCCCCCCCCC
Q 030801           58 NMSDCLSYVTEGSNVTVPDKPCCPELAGLVES-NPICLCQLLGKNNTYGIKIDITRALK-LPSVCGVTTPPVNLCSL  132 (171)
Q Consensus        58 ~L~pCl~yl~g~~~~~~Ps~~CC~alk~l~~~-~~~CLC~~~~~~~~~gi~in~trA~~-LP~~Cgv~~Pp~s~C~~  132 (171)
                      +|..|.+.+.+.   ..+...||.-++++.+. .+.|||..++.   .++ +|...+++ |-..||...|++++|.+
T Consensus         5 Klg~C~nvLg~~---~~~~~~CC~Ll~GL~dleAAvCLCtaika---~~l-lnvpv~l~llln~Cgk~~P~gF~CP~   74 (75)
T d1hypa_           5 DLSICLNILGGS---LGTVDDCCALIGGLGDIEAIVCLCIQLRA---LGI-LNLNRNLQLILNSCGRSYPSNATCPR   74 (75)
T ss_dssp             CCGGGGGGGGTC---CTTHHHHHHHHHTSCHHHHHHHHHHHHHH---HTC-SCHHHHHHHHHHHTTCSSCCCCCCSC
T ss_pred             chhhHHHHhcCc---cCCCCCcchHHhhHHHHHHHHHHHHHHHH---hhh-ccccchHHHHHHHcCCcCcCCCcCCC
Confidence            577888888653   34567899999999887 46899999874   344 67777777 77799999999999975

>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: 2S albumin RicC3
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=86.26  E-value=0.082  Score=37.71  Aligned_cols=73  Identities=25%  Similarity=0.530  Sum_probs=47.9

Q ss_pred             CCCchhhh--cccccCHHHhhCCCC---CCC-----CC-----------cchHHHHHhcccCCCceeceeccCC------
Q 030801           49 EDDCLTKV--LNMSDCLSYVTEGSN---VTV-----PD-----------KPCCPELAGLVESNPICLCQLLGKN------  101 (171)
Q Consensus        49 ~~~C~~~l--~~L~pCl~yl~g~~~---~~~-----Ps-----------~~CC~alk~l~~~~~~CLC~~~~~~------  101 (171)
                      ...|...+  ..|..|..||.....   ...     +.           ..||.-|+.+   +..|.|..+...      
T Consensus        15 ~q~Crqe~q~q~L~sCq~Yl~qq~~~~~~~~~~~~~~~~~~~~~e~~~l~qCC~qL~q~---~~~CrC~~l~~~v~~~~q   91 (125)
T d1psya_          15 SQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQ   91 (125)
T ss_dssp             SSSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTC---CSSHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHhhhHHHHHHHHHHHHhccCCCCcccccccccccccccHHHHHHHHHHHhC---CcCCcCHHHHHHHHHHHH
Confidence            56787753  479999999974210   000     00           2599999997   899999987643      


Q ss_pred             --Ccccccc--CHHHHhhhhcccCCCC
Q 030801          102 --NTYGIKI--DITRALKLPSVCGVTT  124 (171)
Q Consensus       102 --~~~gi~i--n~trA~~LP~~Cgv~~  124 (171)
                        ..-+-.+  =+.+|..||..||+.-
T Consensus        92 q~~~~~~~~~~~~q~Ak~LPs~C~i~~  118 (125)
T d1psya_          92 QGQLHGEESERVAQRAGEIVSSCGVRC  118 (125)
T ss_dssp             HTTCCTTCSHHHHHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHHHHHHHhChhhcCCcc
Confidence              1111100  1456788999999975

>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Seed storage protein, 2S albumin
domain: Methionine-rich 2S protein (albumin 8)
species: Common sunflower (Helianthus annuus) [TaxId: 4232]

Probab=80.84  E-value=0.098  Score=36.20  Aligned_cols=72  Identities=19%  Similarity=0.445  Sum_probs=47.5

Q ss_pred             CCCchhhh---cccccCHHHhhCC---CCCCC------CC-cchHHHHHhcccCCCceeceeccCC--Cccc---cccCH
Q 030801           49 EDDCLTKV---LNMSDCLSYVTEG---SNVTV------PD-KPCCPELAGLVESNPICLCQLLGKN--NTYG---IKIDI  110 (171)
Q Consensus        49 ~~~C~~~l---~~L~pCl~yl~g~---~~~~~------Ps-~~CC~alk~l~~~~~~CLC~~~~~~--~~~g---i~in~  110 (171)
                      ...|...+   ..|..|..||...   .....      +. ..||+.|+.+   ++.|.|..+...  ...+   +.-=.
T Consensus         8 ~q~C~~q~q~qq~L~~Cq~Yl~q~~~~~~~~~~~~~~e~~~~~CC~qL~q~---~~~CrC~~L~~avq~q~~q~~~~~~~   84 (103)
T d1s6da_           8 ESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVM   84 (103)
T ss_dssp             SSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHS---CGGGSSHHHHHHTTSTTCSSTHHHHH
T ss_pred             cccCHHHHHHhHhHHHHHHHHHHHHhccCCCCCccCchHHHHHHHHHHHcC---CCCCcCHHHHHHHHHHHhHHHHHHHH
Confidence            56788665   4799999999631   00111      12 5699999997   899999987643  1111   11123


Q ss_pred             HHHhhhhcccCCC
Q 030801          111 TRALKLPSVCGVT  123 (171)
Q Consensus       111 trA~~LP~~Cgv~  123 (171)
                      ..|.+||..||+.
T Consensus        85 q~Ak~LPs~C~i~   97 (103)
T d1s6da_          85 SMAHNLPIECNLM   97 (103)
T ss_dssp             HHHHHHHHHTTSS
T ss_pred             HHHHhChHhcCCC
Confidence            4577899999997