Citrus Sinensis ID: 030806

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccEEEEEEEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccEEEEEEEEEcccccccccccccccEEcccccccccccccc
Coil and Loop (DISEMBL)
MAMSVSIVAVVTALHLIAFVFAVgaerrrstakvvpdqydemtycvystdastvyGLSAFGLLLISQAVVNGVTRCLcfgkglvtgtsstTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGSILYYWAHtradtggwekhrneglgmamqqqqpgndfeka
Flexible Loop (DISEMBL)
MAMSVSIVAVVTALHLIAFVfavgaerrrstakvvpdqydeMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGSILYYWAHTRADTGGWEKHRNEGLGmamqqqqpgndfeka
Low Complexity Region (SEG)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA
Disordered region (IsUnstruct)
****VSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGSILYYWAHTRADTGGW************************
Disordered Region (DISOPRED)
***SVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFG*******SSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGSILYYWAHT*******************************
Disordered Region (DISEMBL)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGSILYYWAHTRADTGGWEKHRNEGLGMAM************
Disordered Region (DISPRO)
**MSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGSILYYWAHTRADTGGWEKHRNEGLGMA*************
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGGGSILYYWAHTRADTGGWEKHRNEGLGMAMQQQQPGNDFEKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
224111620	199	predicted protein [Populus trichocarpa]	0.994	0.854	0.676	4e-70
225424071	193	PREDICTED: uncharacterized protein LOC10	0.976	0.865	0.687	6e-69
297838579	201	hypothetical protein ARALYDRAFT_475940 [	0.994	0.845	0.62	4e-64
18408976	201	uncharacterized protein [Arabidopsis tha	0.994	0.845	0.625	1e-63
224099405	184	predicted protein [Populus trichocarpa]	0.842	0.782	0.721	2e-63
388501328	193	unknown [Medicago truncatula]	0.970	0.860	0.604	5e-60
356575582	196	PREDICTED: uncharacterized protein LOC10	0.994	0.867	0.619	3e-57
356536286	195	PREDICTED: uncharacterized protein LOC10	0.994	0.871	0.622	8e-57
449458763	202	PREDICTED: uncharacterized protein LOC10	0.947	0.801	0.583	4e-53
371721838	200	unknown [Allium sativum]	0.970	0.83	0.515	3e-49

>gi|224111620|ref|XP_002315922.1| predicted protein [Populus trichocarpa] gi|222864962|gb|EEF02093.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 134/198 (67%), Positives = 154/198 (77%), Gaps = 28/198 (14%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SVSI+AV+T+LHLIAFV A+GAERRRSTAKVVPDQYDE TYCVY TDASTVYGL+AF
Sbjct: 1   MAVSVSILAVITSLHLIAFVLAIGAERRRSTAKVVPDQYDERTYCVYDTDASTVYGLAAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GL+LISQ ++NGVTRCLCFGKGLVTG+ STT A+ FFI SW+SFLGAEACLLAGSARNAY
Sbjct: 61  GLILISQMILNGVTRCLCFGKGLVTGSCSTTCAIIFFIFSWLSFLGAEACLLAGSARNAY 120

Query: 121 HTKYRKIFGG-------------------------GSILYYWAHTRADTGGWEKHRNEGL 155
           HTKYR +F                           GSILYY+AH+RADTGGWEKH+N G+
Sbjct: 121 HTKYRGLFNQGELSCATLRKGVFAAGAALTLLSLIGSILYYFAHSRADTGGWEKHQNVGV 180

Query: 156 GM---AMQQQQPGNDFEK 170
           GM   +  QQQ  ++FEK
Sbjct: 181 GMTSASYPQQQQTSEFEK 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424071|ref|XP_002282799.1| PREDICTED: uncharacterized protein LOC100249231 [Vitis vinifera] gi|147792362|emb|CAN76984.1| hypothetical protein VITISV_027945 [Vitis vinifera] gi|297737776|emb|CBI26977.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 134/195 (68%), Positives = 152/195 (77%), Gaps = 28/195 (14%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SVS++A++ +LHLIAFV AVG+ERRRSTAKVVPD+YDE TYCVYSTDASTVYGL+AF
Sbjct: 1   MAVSVSLMAIIISLHLIAFVLAVGSERRRSTAKVVPDKYDERTYCVYSTDASTVYGLTAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GLLLISQ V+NGVT+CLCFG+GL+ G  STT AVFFFI SWVSFLGAEACLLAGSA+NAY
Sbjct: 61  GLLLISQTVLNGVTKCLCFGRGLI-GGGSTTCAVFFFIFSWVSFLGAEACLLAGSAKNAY 119

Query: 121 HTKYRKIFGGGS-------------------------ILYYWAHTRADTGGWEKHRNEGL 155
           HTKYR +FGG                           ILYYWAH+RADTGGWEKHR+EGL
Sbjct: 120 HTKYRGVFGGQDLSCATLRKGVFAAGAALSLLSLLGSILYYWAHSRADTGGWEKHRSEGL 179

Query: 156 GMAMQQQQPGNDFEK 170
           GM  QQQ   N+F K
Sbjct: 180 GMTQQQQN--NEFGK 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838579|ref|XP_002887171.1| hypothetical protein ARALYDRAFT_475940 [Arabidopsis lyrata subsp. lyrata] gi|297333012|gb|EFH63430.1| hypothetical protein ARALYDRAFT_475940 [Arabidopsis lyrata subsp. lyrata]

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/200 (62%), Positives = 146/200 (73%), Gaps = 30/200 (15%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SVSI+ VVTALHL+AFVFA GAERRRSTA  VPDQYDE T+C Y T+ASTVYG+SAF
Sbjct: 1   MAVSVSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTFCKYGTEASTVYGMSAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GLLL+SQA+VNGVT+CLCFGKGLVTGTS T WA+ FF+VSW+SFLGAEACLLAGSARNAY
Sbjct: 61  GLLLVSQALVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWISFLGAEACLLAGSARNAY 120

Query: 121 HTKYRKIFGG-------------------------GSILYYWAHTRADTGGWEKHRNEGL 155
           HTK   I+ G                          +ILYY AH++ADTGGWEKH+N+G+
Sbjct: 121 HTKSEGIYKGKEISCAVLPVGVFAAGAAFTLMSLIATILYYLAHSKADTGGWEKHQNDGI 180

Query: 156 GMAMQ-----QQQPGNDFEK 170
            + M       +Q   +F K
Sbjct: 181 NIGMTTPSDAPKQQNTEFNK 200

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408976|ref|NP_564925.1| uncharacterized protein [Arabidopsis thaliana] gi|12325326|gb|AAG52607.1|AC016447_16 unknown protein; 73543-72303 [Arabidopsis thaliana] gi|14596227|gb|AAK68841.1| Unknown protein [Arabidopsis thaliana] gi|18377450|gb|AAL66891.1| unknown protein [Arabidopsis thaliana] gi|21592439|gb|AAM64390.1| unknown [Arabidopsis thaliana] gi|332196645|gb|AEE34766.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 125/200 (62%), Positives = 144/200 (72%), Gaps = 30/200 (15%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SVSI+ VVTALHL+AFVFA GAERRRSTA  VPDQYDE T C Y T+ASTVYG+SAF
Sbjct: 1   MAVSVSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GLLL+SQAVVNGVT+CLCFGKGLVTGTS T WA+ FF+VSWVSFLGAEACLL GSARNAY
Sbjct: 61  GLLLVSQAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAY 120

Query: 121 HTKYRKIFGG-------------------------GSILYYWAHTRADTGGWEKHRNEGL 155
           HTK   I+ G                          +ILYY AH++ADTGGWEKH+N+G+
Sbjct: 121 HTKSEGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYLAHSKADTGGWEKHQNDGI 180

Query: 156 GMAMQ-----QQQPGNDFEK 170
            + M       +Q   +F K
Sbjct: 181 NIGMTTPSDAPKQQNTEFNK 200

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099405|ref|XP_002311471.1| predicted protein [Populus trichocarpa] gi|222851291|gb|EEE88838.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/169 (72%), Positives = 132/169 (78%), Gaps = 25/169 (14%)

Query: 14  LHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGV 73
           LHL+AFV A+GAE RRSTAKVVPDQYDE TYCVY TDASTVYGL+AFGLLLISQ +VNGV
Sbjct: 11  LHLVAFVLAIGAESRRSTAKVVPDQYDESTYCVYDTDASTVYGLAAFGLLLISQMIVNGV 70

Query: 74  TRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIFGG--- 130
           TRCLCFGKGLVTG+ STT A+ FFIVSW+SFLGAEACLLAGSARNAYHTKYR  F     
Sbjct: 71  TRCLCFGKGLVTGSCSTTCAIIFFIVSWLSFLGAEACLLAGSARNAYHTKYRGFFRQGDL 130

Query: 131 ----------------------GSILYYWAHTRADTGGWEKHRNEGLGM 157
                                 GSILYYWAH+RADTGGWEKH+NEG+GM
Sbjct: 131 SCATLRRGVFAAGAALTLLSLIGSILYYWAHSRADTGGWEKHQNEGVGM 179

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501328|gb|AFK38730.1| unknown [Medicago truncatula]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 140/192 (72%), Gaps = 26/192 (13%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           M +SV+I+ ++ +LHL+AFVFA+GAERRRS AKVVPD+YDE T+CVY+TDASTVYG++AF
Sbjct: 1   MGVSVTIIVLIISLHLLAFVFAIGAERRRSEAKVVPDEYDERTFCVYTTDASTVYGVAAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
            LLL+SQ V+N VTRCLC GKGL++G  STT AV FFI+SW  FL AEACLLAGSARNAY
Sbjct: 61  SLLLLSQTVLNAVTRCLCCGKGLISG-CSTTCAVIFFILSWTGFLAAEACLLAGSARNAY 119

Query: 121 HTKYR---------------KIFGGG----------SILYYWAHTRADTGGWEKHRNEGL 155
           HTKYR                +F  G          SILYYWAH +ADTG WEKH+NEG+
Sbjct: 120 HTKYRGNFVAHDLSCATLRKGVFAAGAALTLFSMLASILYYWAHAKADTGFWEKHQNEGI 179

Query: 156 GMAMQQQQPGND 167
           G+A     P +D
Sbjct: 180 GLATHNHGPESD 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575582|ref|XP_003555918.1| PREDICTED: uncharacterized protein LOC100781729 [Glycine max]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 146/197 (74%), Gaps = 27/197 (13%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SV+I+ ++ ALHLIAFVFA+GAERRRS AKVVPD+YD+ T+CVY+TDAS+VYGL+A 
Sbjct: 1   MAVSVTILVLIIALHLIAFVFAIGAERRRSEAKVVPDEYDDRTFCVYTTDASSVYGLAAV 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
            LLL+S  V+NGVTRCLC GKGLV+G S+T  AVF FI+SW+SFL AEACLLAGSARNAY
Sbjct: 61  ALLLLSHTVLNGVTRCLCCGKGLVSGCSATC-AVFSFILSWISFLAAEACLLAGSARNAY 119

Query: 121 HTKYR---------------KIFGGG----------SILYYWAHTRADTGGWEKHRNEGL 155
           HTKYR                +F  G          +ILYYWAH++ADTG WEKHRNEGL
Sbjct: 120 HTKYRGYFVKHDLSCATLRKGVFAAGAALTLLSMLTAILYYWAHSKADTGFWEKHRNEGL 179

Query: 156 GMAMQ-QQQPGNDFEKA 171
           G+A Q     G D +KA
Sbjct: 180 GLATQHHHHQGPDSDKA 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536286|ref|XP_003536670.1| PREDICTED: uncharacterized protein LOC100808582 [Glycine max]

 Score =  224 bits (572), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 122/196 (62%), Positives = 144/196 (73%), Gaps = 26/196 (13%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA+SV+I+ ++ ALHLIAFVFAVGAERRRS AKVVPD+YD+ T+C Y+TDASTVYGLSA 
Sbjct: 1   MAVSVTILVLIIALHLIAFVFAVGAERRRSEAKVVPDEYDDQTFCHYTTDASTVYGLSAV 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
            LLL+S  V+NGVTRCLC GKGLV+G S+T+ AV  FI+SW+SFL AEACLLAGSARNAY
Sbjct: 61  ALLLLSHTVLNGVTRCLCCGKGLVSGCSATS-AVISFILSWISFLAAEACLLAGSARNAY 119

Query: 121 HTKYR---------------KIFGGG----------SILYYWAHTRADTGGWEKHRNEGL 155
           HTKYR                +F  G          +ILYYWAH++ADTG WEKH NEGL
Sbjct: 120 HTKYRGYFVNHDLSCATLRKGVFAAGAALTLLSMLTAILYYWAHSKADTGFWEKHHNEGL 179

Query: 156 GMAMQQQQPGNDFEKA 171
           G+A Q    G D +KA
Sbjct: 180 GLATQHHHQGPDSDKA 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458763|ref|XP_004147116.1| PREDICTED: uncharacterized protein LOC101217379 [Cucumis sativus] gi|449520990|ref|XP_004167515.1| PREDICTED: uncharacterized LOC101217379 [Cucumis sativus]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 131/192 (68%), Gaps = 30/192 (15%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           MA S+ ++ ++ +LHLIAFVFA+GAE RRSTA VVPD+YDE TYCVY +DASTVYGL AF
Sbjct: 1   MATSLFVIVIIASLHLIAFVFAIGAEMRRSTAAVVPDKYDETTYCVYDSDASTVYGLVAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
           GLLLISQ V+  VTRCLC GKGL +G  ST  AV FFI+SW  FLGAE+ LLAGS RNAY
Sbjct: 61  GLLLISQTVLMVVTRCLCCGKGLRSG-GSTVCAVIFFIISWHLFLGAESLLLAGSVRNAY 119

Query: 121 HTKYRKIFGGG-------------------------SILYYWAHTRADTGGWEKHRNEGL 155
           HTKYR +                             SILYY  H+RADTGGW+KH+NEG+
Sbjct: 120 HTKYRSVLPLNNLSCAMLRRGVFAAAAALTFLSLVFSILYYSMHSRADTGGWQKHQNEGI 179

Query: 156 GMA----MQQQQ 163
           GM      QQ+Q
Sbjct: 180 GMGPSNLPQQEQ 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|371721838|gb|AEX55242.1| unknown [Allium sativum]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 135/196 (68%), Gaps = 30/196 (15%)

Query: 1   MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
           M +S+ +VAV+ +LH++AFV A+GAE+RRST KV PD+YD+ TYCVY TDASTVYGLSAF
Sbjct: 1   MGVSLPLVAVICSLHIMAFVLAIGAEKRRSTGKVQPDEYDDRTYCVYDTDASTVYGLSAF 60

Query: 61  GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
            L+L+SQ  VNGVTRCLCFGK ++   +S   AV FFI+SW+SF+ AEACL+AGSARNAY
Sbjct: 61  MLVLVSQVAVNGVTRCLCFGKRVLASGASKKCAVLFFIISWLSFIVAEACLIAGSARNAY 120

Query: 121 HTKY----------------RKIFGGGSIL----------YYWAHTRADTGGWEKHRNEG 154
           HTKY                + +F   + +          YY ++ +ADTGGW KH+N+ 
Sbjct: 121 HTKYVGYYAKKDLSSCATLRKGVFAASAAMILISLISLLSYYHSYAKADTGGWVKHQNDS 180

Query: 155 -LGM---AMQQQQPGN 166
            +GM   A ++++ GN
Sbjct: 181 EVGMAEHAPEKREYGN 196

Source: Allium sativum

Species: Allium sativum

Genus: Allium

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2199332	201	AT1G68220 "AT1G68220" [Arabido	0.760	0.646	0.8	1.8e-62
TAIR|locus:2009922	188	AT1G13380 "AT1G13380" [Arabido	0.701	0.638	0.479	9.1e-29
TAIR|locus:505006522	173	AT4G27435 "AT4G27435" [Arabido	0.730	0.722	0.527	4.5e-27
TAIR|locus:505006194	180	AT1G61065 "AT1G61065" [Arabido	0.742	0.705	0.480	9.4e-27
TAIR|locus:2090156	175	AT3G15480 "AT3G15480" [Arabido	0.707	0.691	0.491	2.5e-26
TAIR|locus:2011556	175	AT1G52910 "AT1G52910" [Arabido	0.707	0.691	0.483	3.2e-26
TAIR|locus:2167200	209	AT5G17210 "AT5G17210" [Arabido	0.695	0.569	0.291	1.2e-08

TAIR|locus:2199332 AT1G68220 "AT1G68220" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 104/130 (80%), Positives = 114/130 (87%)

Query:     1 MAMSVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAF 60
             MA+SVSI+ VVTALHL+AFVFA GAERRRSTA  VPDQYDE T C Y T+ASTVYG+SAF
Sbjct:     1 MAVSVSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAF 60

Query:    61 GLLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAY 120
             GLLL+SQAVVNGVT+CLCFGKGLVTGTS T WA+ FF+VSWVSFLGAEACLL GSARNAY
Sbjct:    61 GLLLVSQAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAY 120

Query:   121 HTKYRKIFGG 130
             HTK   I+ G
Sbjct:   121 HTKSEGIYKG 130

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2009922 AT1G13380 "AT1G13380" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 58/121 (47%), Positives = 84/121 (69%)

Query:     4 SVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLL 63
             S  +  +V AL L+AF F++ AERRRS  K + D     T+CVY +D +T YG+ AF  L
Sbjct:     7 STLVFILVVALSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLFL 66

Query:    64 LISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123
             L S++++  VT+C+CFG+ L  G S   W++ +FI SW++FL AEAC++AG+ +NAYHTK
Sbjct:    67 LSSESLLMSVTKCMCFGRPLAPG-SDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTK 125

Query:   124 Y 124
             Y
Sbjct:   126 Y 126

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006522 AT4G27435 "AT4G27435" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 67/127 (52%), Positives = 83/127 (65%)

Query:     3 MSVSIV-AVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFG 61
             M+  IV A+V   +LIAF  AV AE+RRSTA+VV D   +  YCVY +D +T YG+ AF 
Sbjct:     1 MASKIVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFL 60

Query:    62 LLLISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYH 121
               + SQ ++  V+RC C GK L  G  S   A+  FIVSW+ FL AE CLLAGS  NAYH
Sbjct:    61 FSVASQILIMLVSRCFCCGKPLKPG-GSRALALILFIVSWMFFLIAEICLLAGSVENAYH 119

Query:   122 TKYRKIF 128
             TKYR +F
Sbjct:   120 TKYRTMF 126

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:505006194 AT1G61065 "AT1G61065" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 62/129 (48%), Positives = 85/129 (65%)

Query:     4 SVSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLL 63
             SV ++ +V    LIAF  AV AE+RR+T ++  +  D ++YCVY  D +T  G+ +F +L
Sbjct:     3 SVLLLLLVFVFDLIAFGLAVAAEQRRTTWQISRESRD-LSYCVYDKDIATGLGVGSFLVL 61

Query:    64 LISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123
             L SQ ++   +RCLC G+ L T + S +WA+F FI +WV F  A+ CLLAGS RNAYHTK
Sbjct:    62 LASQLLIMVASRCLCCGRAL-TPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHTK 120

Query:   124 YRKIFGGGS 132
             YR  FG  S
Sbjct:   121 YRVYFGNTS 129

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090156 AT3G15480 "AT3G15480" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 60/122 (49%), Positives = 77/122 (63%)

Query:     7 IVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLIS 66
             +V +V  L LIA   A+ AE+RRS  KV  D+  +  YCVY TD +T YG  AF LL +S
Sbjct:     6 VVIIVFILDLIAVGLAIAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFVLLFVS 65

Query:    67 QAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRK 126
             Q ++   +RC C GK L  G  S   A+  F++ WV FL AE CLLA S RNAYHT+YRK
Sbjct:    66 QVLIMAASRCFCCGKSLNPG-GSRACAIILFLICWVFFLIAEMCLLAASIRNAYHTQYRK 124

Query:   127 IF 128
             ++
Sbjct:   125 MW 126

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2011556 AT1G52910 "AT1G52910" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 59/122 (48%), Positives = 76/122 (62%)

Query:     7 IVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLIS 66
             ++ +V  L LIA   A+ AE+RRS  KVVPD   E  +C Y +D +T YG  AF LL IS
Sbjct:     6 VIIIVFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFVLLFIS 65

Query:    67 QAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRK 126
             Q ++   +RC C GK L  G  S    +  F++ WV FL AE CLLAGS RNAYHT YR+
Sbjct:    66 QVIIMVASRCFCCGKALKPG-GSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHTTYRR 124

Query:   127 IF 128
             ++
Sbjct:   125 MW 126

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167200 AT5G17210 "AT5G17210" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 35/120 (29%), Positives = 61/120 (50%)

Query:     5 VSIVAVVTALHLIAFVFAVGAERRR-STAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLL 63
             + +  V+  L L++ V A  AE  R   ++V     D +T C Y    +   G ++   L
Sbjct:     6 IVMCGVLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGFTSALFL 65

Query:    64 LISQAVVNGVTRCLCFGKGLVTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTK 123
             +++Q +V+  + C C  KG     S+   ++  F+VSW +F+ A   LL+G+A N  HT+
Sbjct:    66 MMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLSGAALNDEHTE 125


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.134   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       171   0.00090  108 3  11 22  0.48    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  161 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.64u 0.17s 14.81t   Elapsed:  00:00:00
  Total cpu time:  14.64u 0.17s 14.81t   Elapsed:  00:00:00
  Start:  Thu May  9 22:26:11 2013   End:  Thu May  9 22:26:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam06749	97	pfam06749, DUF1218, Protein of unknown function (D	1e-20

>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218)

 Score = 80.8 bits (200), Expect = 1e-20
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 13/89 (14%)

Query: 59  AFGLLLISQAVVNGVTRCLCFGKGLVTG-TSSTTWAVFFFIVSWVSFLGAEACLLAGSAR 117
           A   L ++Q V N V  C C GK L          AV  F++SW++F+ A A LLAG+AR
Sbjct: 2   AAVFLAVAQVVGNVVGGCCCCGKALPPKSGRKRALAVVCFVLSWIAFVIAFALLLAGAAR 61

Query: 118 NAYHTKYRK------------IFGGGSIL 134
           NAYHT+Y              +F  G++L
Sbjct: 62  NAYHTRYNVHFRPSCYTLKKGVFAAGAVL 90

This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PF06749	97	DUF1218: Protein of unknown function (DUF1218); In	99.85
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	91.3
cd07912	418	Tweety_N N-terminal domain of the protein encoded	89.12
PF07344	155	Amastin: Amastin surface glycoprotein; InterPro: I	88.87

>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function

Probab=99.85  E-value=1.9e-21  Score=143.41  Aligned_cols=71  Identities=44%  Similarity=0.668  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHhcceeccCCCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceee
Q 030806           58 SAFGLLLISQAVVNGVTRCLCFGKGLVT-GTSSTTWAVFFFIVSWVSFLGAEACLLAGSARNAYHTKYRKIF  128 (171)
Q Consensus        58 ~A~v~Ll~aqvi~~~a~~C~Cc~~~~~~-s~~~r~~av~~~v~SWi~f~IA~~lLl~Ga~~N~~~~~~~g~f  128 (171)
                      +|++||+++|+++|+++||+||+++.+| ++.+|+++++||++||++|+||+++|++|+++|++|+++++++
T Consensus         1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~   72 (97)
T PF06749_consen    1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF   72 (97)
T ss_pred             CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            4899999999999999999999988777 6689999999999999999999999999999999998876554

Family members contain a number of conserved cysteine residues.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=91.30  E-value=0.76  Score=45.08  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=45.7

Q ss_pred             eeecCCChhh-HhHHHHHHHHHHHHHHHHHHhcceecc-C-CCCCCC-------cchH---HHHHHHHHHHHHHHHHHHH
Q 030806           44 YCVYSTDAST-VYGLSAFGLLLISQAVVNGVTRCLCFG-K-GLVTGT-------SSTT---WAVFFFIVSWVSFLGAEAC  110 (171)
Q Consensus        44 ~C~Yps~~A~-~lGi~A~v~Ll~aqvi~~~a~~C~Cc~-~-~~~~s~-------~~r~---~av~~~v~SWi~f~IA~~l  110 (171)
                      +-+|.++.-. +++++..++|++  ++.....-|.||| + +..|++       +.+.   -..+.|++||+..+++.+.
T Consensus       406 ~~~y~~yR~~~~lil~~~llLIv--~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~  483 (806)
T PF05478_consen  406 YEKYDSYRWIVGLILCCVLLLIV--LCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFY  483 (806)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555443 445555555554  3344555678898 3 223322       2332   2356789999999999999


Q ss_pred             HHHHhhhcc
Q 030806          111 LLAGSARNA  119 (171)
Q Consensus       111 Ll~Ga~~N~  119 (171)
                      |+.|.....
T Consensus       484 Fl~G~~~~~  492 (806)
T PF05478_consen  484 FLVGGNTYT  492 (806)
T ss_pred             HHHHhhhhe
Confidence            999998744

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=89.12  E-value=2.1  Score=39.33  Aligned_cols=64  Identities=14%  Similarity=0.033  Sum_probs=30.0

Q ss_pred             hhHh-HHHHHHHHHHHHHHHHHHhcceeccCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030806           52 STVY-GLSAFGLLLISQAVVNGVTRCLCFGKGL---VTGTSSTTWAVFFFIVSWVSFLGAEACLLAGSA  116 (171)
Q Consensus        52 A~~l-Gi~A~v~Ll~aqvi~~~a~~C~Cc~~~~---~~s~~~r~~av~~~v~SWi~f~IA~~lLl~Ga~  116 (171)
                      |+++ |..|++.+++.=+...+...|.||.++.   .+....+...+.+.+++-+++ +|.+....|-.
T Consensus        38 Sv~~~a~iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~-aaIi~~f~GN~  105 (418)
T cd07912          38 SLLILASIPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKWSLVIATLLCC-AAIGVGLYGND  105 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHHHHHHHHHHHH-HHHHHHhhccH
Confidence            5554 5566666656656666556666554332   222122233333333333333 35555555443

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long)

Probab=88.87  E-value=2.7  Score=33.03  Aligned_cols=89  Identities=16%  Similarity=0.039  Sum_probs=57.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhcccceeeccCCCCcceeecCCChhhHhHHHHHHHHHHHHHHHHHHhcceeccCCCC
Q 030806            5 VSIVAVVTALHLIAFVFAVGAERRRSTAKVVPDQYDEMTYCVYSTDASTVYGLSAFGLLLISQAVVNGVTRCLCFGKGLV   84 (171)
Q Consensus         5 ~~v~~vv~~lgliAfiLgi~AE~~r~~a~~v~~~~~~~~~C~Yps~~A~~lGi~A~v~Ll~aqvi~~~a~~C~Cc~~~~~   84 (171)
                      -...++..+++..|+++|+..=...                ...+-+...|.+.+++++++.=++....=.=.-|+ ..+
T Consensus        66 ~afaIisi~~~~~a~v~g~~~l~~~----------------~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~  128 (155)
T PF07344_consen   66 QAFAIISIFVYGAAFVLGVLLLCCC----------------SCLRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALK  128 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-Ccc
Confidence            3456777888999999998864432                22234567788888888777665443332223444 222


Q ss_pred             CCCcch-HHHHHHHHHHHHHHHHHHHHH
Q 030806           85 TGTSST-TWAVFFFIVSWVSFLGAEACL  111 (171)
Q Consensus        85 ~s~~~r-~~av~~~v~SWi~f~IA~~lL  111 (171)
                      +. ..+ ..+-.+++.+|+..+|+.+.|
T Consensus       129 ~~-~~~yg~GF~L~v~aw~l~~i~ii~L  155 (155)
T PF07344_consen  129 SR-GYKYGAGFALFVAAWCLDIINIIFL  155 (155)
T ss_pred             CC-CcccCccHHHHHHHHHHHHHHHHhC
Confidence            22 223 367889999999999988764

In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00