Citrus Sinensis ID: 030811

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
MRAGMTVAAAAVLLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVENPPPPPSASPIKEKSGTPSTLYRGQLVLPAVFAIGAVWDAFVRFW
cccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHccccEEEccEEEEEEcccccEEEEEcHHHcccccccccccccccccccEEEEccccccEEEEEcccccccccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccHHHHHcccEEEEccEEEEEEcccccEEEEEEcHHHHHcccccccccccccccccEEEccccccEEEEEcccccccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHc
MRAGMTVAAAAVLLVAMTILVpevdatrwivganqgwtnnvnYTIWAkdkhfyngdWLFFVYDrnqmnvlevnktdyescnsdhplhnwttgagrdvvplnvTRHYYFisgkgfcygGMKLAVrvenpppppsaspikeksgtpstlyrgqlvlPAVFAIGAVWDAFVRFW
MRAGMTVAAAAVLLVAMTILVPEVDATRWIVganqgwtnnVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDhplhnwttgagrdVVPLNVTRHYYFISGKGFCYGGMKLAVRVENPPPPPSASPIKEKSGTPSTLYRGQLVLPAVFAIGAVWDAFVRFW
MRAGMTvaaaavllvaMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVENpppppsaspIKEKSGTPSTLYRGQLVLPAVFAIGAVWDAFVRFW
*****TVAAAAVLLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVR***********************************************
************LLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAV******************************LPAVFAIGAVWDAFVRFW
MRAGMTVAAAAVLLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVEN*****************STLYRGQLVLPAVFAIGAVWDAFVRFW
***GMTVAAAAVLLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVENP*******************YRGQLVLPAVFAIGAVWDAFVRFW
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iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRAGMTVAAAAVLLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVENPPPPPSASPIKEKSGTPSTLYRGQLVLPAVFAIGAVWDAFVRFW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query171 2.2.26 [Sep-21-2011]
Q39131172 Lamin-like protein OS=Ara yes no 0.964 0.959 0.536 9e-50
Q41001189 Blue copper protein OS=Pi N/A no 0.649 0.587 0.382 9e-14
Q9SK27182 Early nodulin-like protei no no 0.754 0.708 0.335 2e-12
P80728108 Mavicyanin OS=Cucurbita p N/A no 0.578 0.916 0.384 5e-12
Q9T076 349 Early nodulin-like protei no no 0.654 0.320 0.333 7e-11
Q02917187 Early nodulin-55-2 OS=Gly no no 0.684 0.625 0.330 6e-09
P0030396 Basic blue protein OS=Cuc N/A no 0.532 0.947 0.357 1e-08
P93328180 Early nodulin-16 OS=Medic N/A no 0.654 0.622 0.322 1e-07
Q8LG89129 Basic blue protein OS=Ara no no 0.654 0.868 0.310 1e-07
P00302107 Stellacyanin OS=Toxicoden N/A no 0.567 0.906 0.352 8e-07
>sp|Q39131|LAML_ARATH Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1 Back     alignment and function desciption
 Score =  195 bits (496), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 114/166 (68%), Gaps = 1/166 (0%)

Query: 7   VAAAAVLLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQ 66
           +  A VL   M   +P V A ++ VG N+ W  N+NYTIWA+ KHFY GDWL+FV+DRNQ
Sbjct: 7   LITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQ 66

Query: 67  MNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVE 126
            N+LEVNKTDYE C +DHP+ NWT GAGRD+V LN T+HYY + GKG CYGGMKL+V+VE
Sbjct: 67  HNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVE 126

Query: 127 NPPPPPSASPIKEKSGTPSTLYRGQLVLP-AVFAIGAVWDAFVRFW 171
             PPPP ++P+K            Q ++P ++FA  A+WD   R W
Sbjct: 127 KLPPPPKSAPVKNIGSVSMVTGLAQFMIPVSLFAFPAMWDVISRMW 172

Arabidopsis thaliana (taxid: 3702)
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2 Back     alignment and function description
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1 Back     alignment and function description
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1 Back     alignment and function description
>sp|Q02917|NO552_SOYBN Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1 Back     alignment and function description
>sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus PE=1 SV=1 Back     alignment and function description
>sp|P93328|NO16_MEDTR Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1 Back     alignment and function description
>sp|Q8LG89|BABL_ARATH Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=1 SV=2 Back     alignment and function description
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
224141443176 predicted protein [Populus trichocarpa] 0.964 0.937 0.818 1e-74
225452918171 PREDICTED: lamin-like protein [Vitis vin 0.994 0.994 0.760 1e-68
319433443175 copper binding protein 4 [Gossypium hirs 0.970 0.948 0.782 1e-67
296082966159 unnamed protein product [Vitis vinifera] 0.923 0.993 0.778 3e-66
255584341183 Blue copper protein precursor, putative 0.877 0.819 0.783 1e-64
357496611179 Lamin-like protein [Medicago truncatula] 0.959 0.916 0.682 7e-63
224080137173 predicted protein [Populus trichocarpa] 0.883 0.872 0.754 9e-60
449437808179 PREDICTED: lamin-like protein-like [Cucu 0.976 0.932 0.678 1e-54
388496108176 unknown [Lotus japonicus] 0.970 0.943 0.656 1e-54
388521815176 unknown [Lotus japonicus] 0.970 0.943 0.651 4e-54
>gi|224141443|ref|XP_002324082.1| predicted protein [Populus trichocarpa] gi|118482789|gb|ABK93312.1| unknown [Populus trichocarpa] gi|222867084|gb|EEF04215.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  283 bits (724), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/165 (81%), Positives = 151/165 (91%)

Query: 7   VAAAAVLLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQ 66
           + A AVL+ AM ++VPEV ATRW VG+N GWT+NVNYTIWA+ KHFYNGDWLFFVYDRNQ
Sbjct: 12  MVALAVLVFAMVVMVPEVSATRWTVGSNMGWTSNVNYTIWAQGKHFYNGDWLFFVYDRNQ 71

Query: 67  MNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVE 126
           MN+LEVNKTDYESCNSDHPLHNWT GAGRDVVPLNVTR+YYFISGKGFCYGGMKLAV VE
Sbjct: 72  MNILEVNKTDYESCNSDHPLHNWTRGAGRDVVPLNVTRNYYFISGKGFCYGGMKLAVHVE 131

Query: 127 NPPPPPSASPIKEKSGTPSTLYRGQLVLPAVFAIGAVWDAFVRFW 171
           NPPPPP+ASP+ EKSG+PS+++R Q VLP VFAIGA+WDAFVRFW
Sbjct: 132 NPPPPPTASPLDEKSGSPSSIFRSQYVLPTVFAIGALWDAFVRFW 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225452918|ref|XP_002284104.1| PREDICTED: lamin-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|319433443|gb|ADV57639.1| copper binding protein 4 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|296082966|emb|CBI22267.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584341|ref|XP_002532906.1| Blue copper protein precursor, putative [Ricinus communis] gi|223527340|gb|EEF29486.1| Blue copper protein precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357496611|ref|XP_003618594.1| Lamin-like protein [Medicago truncatula] gi|87240662|gb|ABD32520.1| Blue (type 1) copper domain [Medicago truncatula] gi|355493609|gb|AES74812.1| Lamin-like protein [Medicago truncatula] gi|388499076|gb|AFK37604.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224080137|ref|XP_002306028.1| predicted protein [Populus trichocarpa] gi|222848992|gb|EEE86539.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449437808|ref|XP_004136682.1| PREDICTED: lamin-like protein-like [Cucumis sativus] gi|449494698|ref|XP_004159622.1| PREDICTED: lamin-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388496108|gb|AFK36120.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388521815|gb|AFK48969.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
TAIR|locus:2150951172 ENODL17 "early nodulin-like pr 0.906 0.901 0.519 2.2e-43
TAIR|locus:2102157167 ENODL16 "early nodulin-like pr 0.602 0.616 0.682 4.9e-37
TAIR|locus:2135798141 ENODL19 "early nodulin-like pr 0.619 0.751 0.575 2.3e-32
TAIR|locus:1006230143163 ENODL20 "early nodulin-like pr 0.619 0.650 0.444 1.5e-21
TAIR|locus:2151069187 AT5G26330 [Arabidopsis thalian 0.578 0.529 0.375 1.3e-13
TAIR|locus:2085775203 ENODL9 "early nodulin-like pro 0.614 0.517 0.396 2.7e-13
TAIR|locus:2081952187 AT3G60270 [Arabidopsis thalian 0.619 0.566 0.372 2.7e-13
TAIR|locus:2040164182 ENODL14 "early nodulin-like pr 0.719 0.675 0.328 2.4e-12
TAIR|locus:4010713753106 AT3G17675 [Arabidopsis thalian 0.567 0.915 0.375 2.4e-12
TAIR|locus:2154679 370 ENODL1 "early nodulin-like pro 0.578 0.267 0.384 3e-12
TAIR|locus:2150951 ENODL17 "early nodulin-like protein 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 81/156 (51%), Positives = 103/156 (66%)

Query:    17 MTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTD 76
             M   +P V A ++ VG N+ W  N+NYTIWA+ KHFY GDWL+FV+DRNQ N+LEVNKTD
Sbjct:    17 MAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTD 76

Query:    77 YESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVENXXXXXXXXX 136
             YE C +DHP+ NWT GAGRD+V LN T+HYY + GKG CYGGMKL+V+VE          
Sbjct:    77 YEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAP 136

Query:   137 IKEKSGTPSTLYRGQLVLP-AVFAIGAVWDAFVRFW 171
             +K            Q ++P ++FA  A+WD   R W
Sbjct:   137 VKNIGSVSMVTGLAQFMIPVSLFAFPAMWDVISRMW 172
GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0009055 "electron carrier activity" evidence=IEA
GO:0031225 "anchored to membrane" evidence=TAS
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
TAIR|locus:2102157 ENODL16 "early nodulin-like protein 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135798 ENODL19 "early nodulin-like protein 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230143 ENODL20 "early nodulin-like protein 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151069 AT5G26330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081952 AT3G60270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4010713753 AT3G17675 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154679 ENODL1 "early nodulin-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39131LAML_ARATHNo assigned EC number0.53610.96490.9593yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
PLN03148167 PLN03148, PLN03148, Blue copper-like protein; Prov 1e-40
pfam0229884 pfam02298, Cu_bind_like, Plastocyanin-like domain 3e-30
>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional Back     alignment and domain information 
 Score =  134 bits (338), Expect = 1e-40
 Identities = 64/163 (39%), Positives = 93/163 (57%), Gaps = 9/163 (5%)

Query: 9   AAAVLLVAMTIL--VPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQ 66
           +A +LL     L       AT  IVGAN+GW   +NYT+WA ++ FY GD + F Y + Q
Sbjct: 1   SAHLLLFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQ 60

Query: 67  MNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRVE 126
            NV EVN+T Y++C ++    NWT+  G+D +PLN  + YYFI G G C+ GMK+ + V 
Sbjct: 61  YNVFEVNQTGYDNCTTEGAAGNWTS--GKDFIPLNKAKRYYFICGNGQCFNGMKVTILVH 118

Query: 127 NPPPPPSASPI----KEKSGTPSTLYRGQLVLPA-VFAIGAVW 164
             PPPPS +      K  S  P+  ++G + L   V  + ++W
Sbjct: 119 PLPPPPSHTAAANGAKSHSAAPAAFHKGLVALRGLVLWMASIW 161

Length = 167
>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 171
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 99.97
PRK02710119 plastocyanin; Provisional 98.52
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 98.3
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 98.27
COG3794128 PetE Plastocyanin [Energy production and conversio 98.22
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 98.07
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 98.06
TIGR0265783 amicyanin amicyanin. Members of this family are am 96.97
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 96.74
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 96.65
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 95.74
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 94.3
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 93.98
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 91.08
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 91.03
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 90.82
COG4454158 Uncharacterized copper-binding protein [Inorganic 88.79
PRK10378 375 inactive ferrous ion transporter periplasmic prote 86.1
TIGR02376 311 Cu_nitrite_red nitrite reductase, copper-containin 84.12
PRK02888635 nitrous-oxide reductase; Validated 80.54
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.3e-50  Score=319.18  Aligned_cols=146  Identities=40%  Similarity=0.825  Sum_probs=128.5

Q ss_pred             HhhccccceeEEEecCCCCCCCCCCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCccee
Q 030811           18 TILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDV   97 (171)
Q Consensus        18 ~~~~~~a~A~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~   97 (171)
                      +++...+.|++|+|||+.||+.+.||++|+++++|++||+|+|+|++++|||+||+|++|++|+.++|+..+++|+  +.
T Consensus        12 ~~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~--d~   89 (167)
T PLN03148         12 LFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGK--DF   89 (167)
T ss_pred             HHhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCC--cE
Confidence            3445678899999999999999999999999999999999999999999999999999999999999999999987  99


Q ss_pred             EEcccCceEEEEeCcCcCcCCCeEEEEeeCCCCCCCCCCCCCCCCCCccc----------ccCchhHHHHHHHHHHHh
Q 030811           98 VPLNVTRHYYFISGKGFCYGGMKLAVRVENPPPPPSASPIKEKSGTPSTL----------YRGQLVLPAVFAIGAVWD  165 (171)
Q Consensus        98 v~L~~~g~~YFic~~gHC~~GmKl~I~V~~~~~~p~~~p~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  165 (171)
                      |+|+++|+|||||+.+||++||||+|+|.+.+|||++++....+.+|++.          .++|++.+++|+++++|+
T Consensus        90 v~L~~~G~~YFIcg~ghC~~GmKl~I~V~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (167)
T PLN03148         90 IPLNKAKRYYFICGNGQCFNGMKVTILVHPLPPPPSHTAAANGAKSHSAAPAAFHKGLVALRGLVLWMASIWFGSGWI  167 (167)
T ss_pred             EEecCCccEEEEcCCCccccCCEEEEEEcCCCCCCCCccccCCCCCCCCcccccccchhhhhhhhhHHHHHHhhcccC
Confidence            99999999999999999999999999999877666655544344344433          678888899999988885

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
1ws7_A109 Crystal Structure Of Mavicyanin From Cucurbita Pepo 3e-13
1f56_A91 Spinach Plantacyanin Length = 91 2e-10
2cbp_A96 Cucumber Basic Protein, A Blue Copper Protein Lengt 3e-10
1x9r_A116 Umecyanin From Horse Raddish- Crystal Structure Of 1e-04
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109 Back     alignment and structure 
Iteration: 1

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 5/104 (4%)
Query: 26  ATRWIVGANQGWTNNV--NYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSD 83
           AT   VG + GWT  V  +Y  WA    F+ GD L F Y+    NVL+V++  ++SCNS 
Sbjct: 2   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 84  HPLHNWTTGAGRDVVPLNVTRHYYFISG-KGFCYGGMKLAVRVE 126
            P  ++T+GA  D +PL     +YF+ G  G C  G K+ ++V+
Sbjct: 62  SPAASYTSGA--DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVD 103
>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91 Back     alignment and structure
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96 Back     alignment and structure
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 2e-35
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 6e-35
1jer_A138 Cucumber stellacyanin; electron transport, copper, 3e-34
2cbp_A96 Cucumber basic protein; electron transport, phytoc 7e-33
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 3e-32
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
 Score =  119 bits (299), Expect = 2e-35
 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 29  WIVGANQGWTNNVN---YTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHP 85
           + VG +  W    +   Y  WA  K F  GD L F +     +V  V K  +++C  ++P
Sbjct: 4   YDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENP 63

Query: 86  LHNWTTGAGRDVVPLNVTRHYYFISG-KGFCYGGMKLAVRVENPPPPPSASP 136
           + + TT      + LN T   Y+I      C  G KL++ V         + 
Sbjct: 64  ISHMTT--PPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGAT 113
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 100.0
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 100.0
2cbp_A96 Cucumber basic protein; electron transport, phytoc 100.0
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 100.0
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 99.2
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.2
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 99.02
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.02
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 98.99
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 98.89
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 98.88
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 98.86
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 98.85
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 98.85
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 98.81
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 98.81
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 98.8
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 98.8
1byp_A99 Protein (plastocyanin); electron transfer, photosy 98.77
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 98.76
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 98.6
3c75_A132 Amicyanin; copper proteins, electron transfer comp 98.3
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 98.3
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 97.99
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 97.96
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 97.88
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 97.87
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 97.8
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 97.77
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 97.69
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 97.4
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 97.37
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 97.34
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 97.09
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 96.91
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 96.71
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 96.34
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 96.11
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 96.09
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 95.51
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 95.35
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 94.68
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 93.46
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 92.79
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 91.16
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 90.21
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 87.39
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
Probab=100.00  E-value=2e-42  Score=268.39  Aligned_cols=110  Identities=30%  Similarity=0.491  Sum_probs=98.7

Q ss_pred             ceeEEEecCCCCCCCC---CCccccccCCceeeCCEEEEEeecCCceEEEE-ccccCCCcCCCCCCccccCCCcceeEEc
Q 030811           25 DATRWIVGANQGWTNN---VNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEV-NKTDYESCNSDHPLHNWTTGAGRDVVPL  100 (171)
Q Consensus        25 ~A~~~~VGg~~GW~~~---~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V-~~~~Y~~C~~~~p~~~~~~G~g~~~v~L  100 (171)
                      +|++|+|||+.||+.+   .||++|+++++|+|||+|+|+|+++.|+|+|| ++++|+.|+.++++..+++|+  ++|+|
T Consensus         2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~--~~v~L   79 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTS--PVIER   79 (138)
T ss_dssp             CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCS--CEEEE
T ss_pred             CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCC--eEEEe
Confidence            5789999999999998   78999999999999999999999999999999 999999999999999898876  89999


Q ss_pred             -ccCceEEEEeCc-CcCcCCCeEEEEeeCCCCCCCCCC
Q 030811          101 -NVTRHYYFISGK-GFCYGGMKLAVRVENPPPPPSASP  136 (171)
Q Consensus       101 -~~~g~~YFic~~-gHC~~GmKl~I~V~~~~~~p~~~p  136 (171)
                       +++|++||||++ +||++||||+|+|....++++++|
T Consensus        80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~~p  117 (138)
T 1jer_A           80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPP  117 (138)
T ss_dssp             CCSSEEEEEECCSTTTGGGTCEEEEEEECCC-------
T ss_pred             ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCCCC
Confidence             999999999999 999999999999998776444333
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 171
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 9e-35
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 1e-30
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 2e-29
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 1e-26
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  115 bits (289), Expect = 9e-35
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 29  WIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHN 88
           ++VG + GWT   N   W K K F  GD L F Y+ +  NV+ VN+  + +CN+      
Sbjct: 3   YVVGGSGGWT--FNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60

Query: 89  WTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAVRV 125
           +T+  GRD + L   + Y+  +  G C  GMK+AV  
Sbjct: 61  YTS--GRDQIKLPKGQSYFICNFPGHCQSGMKIAVNA 95
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 100.0
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 99.98
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 99.03
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 98.99
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 98.9
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 98.84
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 98.83
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 98.81
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 98.8
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 98.8
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 98.76
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 98.75
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.61
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.6
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.47
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.4
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.32
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 98.08
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 97.78
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 97.38
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 97.06
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 96.49
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 96.49
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 96.43
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 96.2
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 95.49
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 95.22
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 94.9
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 94.58
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 94.33
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 93.44
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 92.79
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 89.84
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 86.66
d2q9oa1162 Laccase {Melanocarpus albomyces [TaxId: 204285]} 85.38
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 82.9
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 81.85
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

Probab=100.00  E-value=4.4e-39  Score=234.22  Aligned_cols=95  Identities=37%  Similarity=0.688  Sum_probs=89.7

Q ss_pred             eEEEecCCCCCCCCCCccccccCCceeeCCEEEEEeecCCceEEEEccccCCCcCCCCCCccccCCCcceeEEcccCceE
Q 030811           27 TRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHY  106 (171)
Q Consensus        27 ~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~Y~~C~~~~p~~~~~~G~g~~~v~L~~~g~~  106 (171)
                      +.|+|||+.||++  +|++||++++|++||+|+|+|+++.|+|+||+|++|++|+.++|+..+++|+  +.|+|++ |++
T Consensus         1 A~y~VGg~~GW~~--~y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~--~~v~L~~-G~~   75 (96)
T d2cbpa_           1 AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGR--DQIKLPK-GQS   75 (96)
T ss_dssp             CEEETTGGGCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSE--EEEECCS-EEE
T ss_pred             CEEEcCCCCCCCc--CHHHHhCCCcEecCCEEEEecCCCCceEEEEChHHcCccCCCCCcccccCCC--eEEEeCC-CCC
Confidence            4799999999985  6999999999999999999999999999999999999999999999898876  8999986 999


Q ss_pred             EEEeCc-CcCcCCCeEEEEee
Q 030811          107 YFISGK-GFCYGGMKLAVRVE  126 (171)
Q Consensus       107 YFic~~-gHC~~GmKl~I~V~  126 (171)
                      ||||+. +||++||||+|+|.
T Consensus        76 YFic~~~~hC~~G~Kl~V~Vl   96 (96)
T d2cbpa_          76 YFICNFPGHCQSGMKIAVNAL   96 (96)
T ss_dssp             EEECCSTTTGGGTCEEEEEEC
T ss_pred             EEEeCCCCcCcCCCEEEEEEC
Confidence            999999 99999999999984
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure