Citrus Sinensis ID: 030827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQASIRG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHccccccccccccccccccccEEcc
Coil and Loop (DISEMBL)
MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETlgrsynvpddidedelMGELDALeadmgmedeagvpsylqpdkepdldaelnlptapsghasaqhdrpqasirg
Flexible Loop (DISEMBL)
mrpgpaqeaIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTapsghasaqhdrpqasirg
Low Complexity Region (SEG)
MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQASIRG
Disordered region (IsUnstruct)
***********************YEGQRDMLYNQTFNLDQVAFASE*****************************************************************************************************************************
Disordered Region (DISOPRED)
***************RVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQE***********IDEDELMGELDAL***************************************************
Disordered Region (DISEMBL)
*********IKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTA******************
Disordered Region (DISPRO)
****PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM***A*VPS*******PDLDA*LNL*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGxxxxxxxxxxxxxxxxxxxxxMKTVKIQDxxxxxxxxxxxxxxxxxxxxxLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQASIRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q54JK4	215	Charged multivesicular bo	yes	no	0.830	0.660	0.486	4e-34
Q4QQV8	219	Charged multivesicular bo	yes	no	0.900	0.703	0.441	1e-27
Q9D7S9	219	Charged multivesicular bo	yes	no	0.900	0.703	0.441	1e-27
Q9VVI9	226	Charged multivesicular bo	yes	no	0.883	0.668	0.379	4e-27
Q5RBR3	219	Charged multivesicular bo	yes	no	0.900	0.703	0.435	5e-27
Q9NZZ3	219	Charged multivesicular bo	yes	no	0.900	0.703	0.435	5e-27
Q7T339	220	Charged multivesicular bo	no	no	0.672	0.522	0.5	6e-26
Q5FW29	219	Charged multivesicular bo	yes	no	0.672	0.525	0.5	1e-25
Q6DD52	219	Charged multivesicular bo	N/A	no	0.672	0.525	0.491	8e-25
O74422	210	Uncharacterized protein C	yes	no	0.801	0.652	0.379	2e-17

>sp|Q54JK4|CHMP5_DICDI Charged multivesicular body protein 5 OS=Dictyostelium discoideum GN=chmp5 PE=3 SV=1

 Score =  144 bits (362), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/144 (48%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQ AIK +A+RVL+QK+MYE QRD + + +FN++Q  FA+E ++D   T++A+K  
Sbjct: 52  RPGPAQNAIKQKAIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQG 111

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
            K++K  +K +KI+D+D++QDEM DL+D ++EIQE+LGR+Y  PD +DE EL  EL ++ 
Sbjct: 112 AKDMKTQLKHIKIEDVDDMQDEMQDLLDYNNEIQESLGRAYQTPDTLDESELEAELMSMG 171

Query: 122 ADMGMEDEAGVPSYLQPDKEPDLD 145
            +  +E EA +PSYL     P  D
Sbjct: 172 EE--LELEASMPSYLMTPSVPTTD 193

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.
Dictyostelium discoideum (taxid: 44689)

>sp|Q4QQV8|CHMP5_RAT Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 16/170 (9%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE LGRSY  P ++DED+L  ELDAL
Sbjct: 112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDAL 170

Query: 121 ------EADMGMEDEA--------GVPSYLQPDKEPDLDAELNLPTAPSG 156
                 + D    DEA        GVP+  + +K+  L  E  LP  P+ 
Sbjct: 171 GDELLADEDSSYLDEAASAPAIPEGVPTDTK-NKDGVLVDEFGLPQIPAS 219

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7S9|CHMP5_MOUSE Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=2 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 16/170 (9%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE LGRSY  P ++DED+L  ELDAL
Sbjct: 112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTP-ELDEDDLEAELDAL 170

Query: 121 ------EADMGMEDEA--------GVPSYLQPDKEPDLDAELNLPTAPSG 156
                 + D    DEA        GVP+  + +K+  L  E  LP  P+ 
Sbjct: 171 GDELLADEDSSYLDEAASAPAIPEGVPTDTK-NKDGVLVDEFGLPQIPAS 219

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis. ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Mus musculus (taxid: 10090)

>sp|Q9VVI9|CHMP5_DROME Charged multivesicular body protein 5 OS=Drosophila melanogaster GN=CG6259 PE=1 SV=2

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 107/174 (61%), Gaps = 23/174 (13%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+ ++K +A+RVLKQK+ YE Q + L NQ+FN++Q  +A++ +KD Q T+ A+K 
Sbjct: 52  MREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKD 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             K++K   K + I  I+++QD+M D+ + + E+QE LGR+Y +P ++D+D+L  ELDAL
Sbjct: 112 GVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALGRTYGMP-EVDDDDLQAELDAL 170

Query: 121 EADMGMEDEAGVPSYL--------QPDKEPDLDA-----------ELNLPTAPS 155
             ++ ++D+    SYL         P +EP  D+           E  LP  P+
Sbjct: 171 GDEIALDDDT---SYLDDVVKAPEAPSREPGADSIVPGKSTIETDEFGLPKIPT 221

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q5RBR3|CHMP5_PONAB Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2 SV=1

 Score =  120 bits (300), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 16/170 (9%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P ++DED+L  ELDAL
Sbjct: 112 GVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDAL 170

Query: 121 ------EADMGMEDEA--------GVPSYLQPDKEPDLDAELNLPTAPSG 156
                 + D    DEA        GVP+  + +K+  L  E  LP  P+ 
Sbjct: 171 GDELLADEDSSYLDEAASAPAIPEGVPTDTK-NKDGVLVDEFGLPQIPAS 219

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4.

Pongo abelii (taxid: 9601)

>sp|Q9NZZ3|CHMP5_HUMAN Charged multivesicular body protein 5 OS=Homo sapiens GN=CHMP5 PE=1 SV=1

 Score =  120 bits (300), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 105/170 (61%), Gaps = 16/170 (9%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P ++DED+L  ELDAL
Sbjct: 112 GVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTP-ELDEDDLEAELDAL 170

Query: 121 ------EADMGMEDEA--------GVPSYLQPDKEPDLDAELNLPTAPSG 156
                 + D    DEA        GVP+  + +K+  L  E  LP  P+ 
Sbjct: 171 GDELLADEDSSYLDEAASAPAIPEGVPTDTK-NKDGVLVDEFGLPQIPAS 219

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, possibly in conjunction with the AAA ATPase VPS4. Involved in HIV-1 p6- and p9-dependent virus release.

Homo sapiens (taxid: 9606)

>sp|Q7T339|CHMP5_DANRE Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2 SV=1

 Score =  116 bits (291), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GP++  +K +AMRVLKQKRMYEGQRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MRDGPSKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKI 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGE 116
             KE+K   K VKI  I++LQD++ D+M+ ++E+QE L RSY  P +IDED+L  E
Sbjct: 112 GAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYGTP-EIDEDDLEAE 166

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Danio rerio (taxid: 7955)

>sp|Q5FW29|CHMP5_XENTR Charged multivesicular body protein 5 OS=Xenopus tropicalis GN=chmp5 PE=2 SV=1

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GP++  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +A + +KD + T+ A+K 
Sbjct: 52  MREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKV 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGE 116
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P +IDED+L  E
Sbjct: 112 GAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP-EIDEDDLEAE 166

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DD52|CHMP5_XENLA Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1

 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 82/116 (70%), Gaps = 1/116 (0%)

Query: 1   MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
           MR GP++  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct: 52  MREGPSKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKV 111

Query: 61  ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGE 116
             KE+K   K VKI  I++LQD++ D+M+ ++EIQE L RSY  P +IDED+L  E
Sbjct: 112 GAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTP-EIDEDDLEAE 166

Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids.

Xenopus laevis (taxid: 8355)

>sp|O74422|YQ56_SCHPO Uncharacterized protein C162.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC162.06c PE=3 SV=1

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 8/145 (5%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGP Q A+K RAM VL+QK++YE Q   L  Q+FN++Q A  +E +K+   T+  ++  
Sbjct: 53  RPGPGQTALKQRAMNVLRQKKIYESQLQQLQQQSFNMEQAAMTTESLKNTMATVQTMQET 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL- 120
            ++LK   K V I+ I+ LQDE+ D MD + E+ E LG++     DI+ DE   + +   
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEVLGQNMT---DINVDEEELDAELEA 169

Query: 121 ----EADMGMEDEAGVPSYLQPDKE 141
                + +G +  A  PSYL P  E
Sbjct: 170 LQQESSWLGDQSTAEKPSYLMPSNE 194

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
255555154	237	Charged multivesicular body protein, put	0.994	0.717	0.821	1e-79
388500300	237	unknown [Lotus japonicus]	0.970	0.700	0.892	5e-79
224113397	236	predicted protein [Populus trichocarpa]	0.994	0.720	0.820	4e-78
449434524	237	PREDICTED: charged multivesicular body p	0.994	0.717	0.810	5e-78
224097586	236	predicted protein [Populus trichocarpa]	0.923	0.669	0.893	2e-77
255627689	250	unknown [Glycine max]	0.970	0.664	0.880	2e-77
225440700	237	PREDICTED: charged multivesicular body p	0.964	0.696	0.847	2e-77
351727308	247	uncharacterized protein LOC100527083 [Gl	0.970	0.672	0.880	4e-77
30681419	235	charged multivesicular body protein 5 [A	0.994	0.723	0.786	1e-75
12322781	221	unknown protein; 22452-23721 [Arabidopsi	0.982	0.760	0.828	1e-75

>gi|255555154|ref|XP_002518614.1| Charged multivesicular body protein, putative [Ricinus communis] gi|223542213|gb|EEF43756.1| Charged multivesicular body protein, putative [Ricinus communis]

 Score =  300 bits (768), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 152/185 (82%), Positives = 163/185 (88%), Gaps = 15/185 (8%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTM+ALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMSALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS+EIQETLGRSYN+PDDIDE+ELMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNIPDDIDEEELMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDR--------------PQ 166
           ADMG+E E  GVPSYLQPDKEPDLD+ELNLP+AP+G A+    R              P+
Sbjct: 173 ADMGLEIEGDGVPSYLQPDKEPDLDSELNLPSAPTGQAAGPAGRNNAQAEDELGLPAVPR 232

Query: 167 ASIRG 171
           ASIRG
Sbjct: 233 ASIRG 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500300|gb|AFK38216.1| unknown [Lotus japonicus]

 Score =  298 bits (763), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 149/167 (89%), Positives = 155/167 (92%), Gaps = 1/167 (0%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQV FA+EGIKDAQQTMTALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVQFAAEGIKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS+EIQETLGRSYNVPDDIDEDELMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDELMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA 167
            DMG E EA GVPSYLQPDKEPDLDAELNLP+AP+G  +  H R  A
Sbjct: 173 LDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRFNA 219

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113397|ref|XP_002316482.1| predicted protein [Populus trichocarpa] gi|222865522|gb|EEF02653.1| predicted protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 164/184 (89%), Gaps = 14/184 (7%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMR+LKQKRMYEGQRDMLYNQT+NLDQVAFASEGIKDAQQTM+ALKSA
Sbjct: 53  RPGPAQEAVKARAMRILKQKRMYEGQRDMLYNQTYNLDQVAFASEGIKDAQQTMSALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS+EIQETLGRSYNVPDDIDE+ELMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHAS------AQHD-------RPQA 167
           ADMGME E+ GVPSYLQPDKE DLDAELNLP+AP+G  +      AQ +        P+A
Sbjct: 173 ADMGMETESDGVPSYLQPDKESDLDAELNLPSAPTGQGAPASRYNAQAEDELGLPAVPRA 232

Query: 168 SIRG 171
           S+RG
Sbjct: 233 SLRG 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434524|ref|XP_004135046.1| PREDICTED: charged multivesicular body protein 5-like [Cucumis sativus] gi|449522013|ref|XP_004168023.1| PREDICTED: charged multivesicular body protein 5-like [Cucumis sativus]

 Score =  295 bits (755), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 150/185 (81%), Positives = 158/185 (85%), Gaps = 15/185 (8%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTM+ALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMSALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTV+IQDIDNLQDEMMDLMDVS+EIQETLGRSYNVPDDIDEDEL+GELDALE
Sbjct: 113 NKELKGMMKTVRIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDELLGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDR--------------PQ 166
           ADMG E EA GVPSYLQPDKE D + ELNLP AP GHA+    R              P 
Sbjct: 173 ADMGFETEADGVPSYLQPDKESDFEGELNLPAAPIGHAAVPAGRNNAQAEDELGLPAVPH 232

Query: 167 ASIRG 171
           AS+RG
Sbjct: 233 ASLRG 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097586|ref|XP_002310998.1| predicted protein [Populus trichocarpa] gi|222850818|gb|EEE88365.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (749), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 142/159 (89%), Positives = 154/159 (96%), Gaps = 1/159 (0%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+K+RAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQT++ALKSA
Sbjct: 53  RPGPAQEAVKSRAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTVSALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS EIQETLGRSY+VPDDIDE++LMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSSEIQETLGRSYSVPDDIDEEDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHAS 159
           ADM ME E+ GVPSYLQPDKEPD D+ELNLP+AP+GHA+
Sbjct: 173 ADMAMETESDGVPSYLQPDKEPDFDSELNLPSAPTGHAA 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255627689|gb|ACU14189.1| unknown [Glycine max]

 Score =  293 bits (749), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/167 (88%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQV FA+EGIKDAQQTMTALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVQFAAEGIKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS+EIQETLGRSYNVPDDIDED+LMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA 167
            DMG E EA GVPSYLQPDKEPDLDAELNLP AP+G  +    R  A
Sbjct: 173 LDMGNETEADGVPSYLQPDKEPDLDAELNLPPAPTGQTAVPPGRSNA 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440700|ref|XP_002280464.1| PREDICTED: charged multivesicular body protein 5 [Vitis vinifera] gi|297740204|emb|CBI30386.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 144/170 (84%), Positives = 160/170 (94%), Gaps = 5/170 (2%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQV+FA+EGIKDAQQTMTALK+A
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVSFAAEGIKDAQQTMTALKAA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKI+DID++QDEMMDLMDVS EIQE+LGRSYNVPDDIDED+LMGELDALE
Sbjct: 113 NKELKGMMKTVKIEDIDSMQDEMMDLMDVSSEIQESLGRSYNVPDDIDEDDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHA----SAQHDRPQ 166
           ADMGME E+ GVP+YLQPDKEPDLDAEL+LP+AP+GH     S Q+ RP+
Sbjct: 173 ADMGMETESTGVPAYLQPDKEPDLDAELSLPSAPTGHGAVPPSRQNARPE 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727308|ref|NP_001238436.1| uncharacterized protein LOC100527083 [Glycine max] gi|255631516|gb|ACU16125.1| unknown [Glycine max]

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 147/167 (88%), Positives = 153/167 (91%), Gaps = 1/167 (0%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQKRMYEGQRDMLYNQTFNLDQV FA+EGIKDAQQTMTALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVQFAAEGIKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS+EIQETLGRSYNVPDDIDED+LMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEDDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA 167
            DMG E EA GVPSYLQPDKEPDLDAELNLP AP+G  +    R  A
Sbjct: 173 LDMGNETEADGVPSYLQPDKEPDLDAELNLPPAPTGQTAVPPGRFNA 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681419|ref|NP_187675.2| charged multivesicular body protein 5 [Arabidopsis thaliana] gi|8567798|gb|AAF76370.1| unknown protein [Arabidopsis thaliana] gi|29028830|gb|AAO64794.1| At3g10640 [Arabidopsis thaliana] gi|110736412|dbj|BAF00173.1| hypothetical protein [Arabidopsis thaliana] gi|332641416|gb|AEE74937.1| charged multivesicular body protein 5 [Arabidopsis thaliana]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 144/183 (78%), Positives = 158/183 (86%), Gaps = 13/183 (7%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS EIQE+LGRSYN+PD +DED+LMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSSEIQESLGRSYNIPDGLDEDDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDR------------PQAS 168
           ADMG E EA G+PSYLQPD E D D+ELNLP AP+GH  A H R            P+AS
Sbjct: 173 ADMGNETEADGMPSYLQPDTETDYDSELNLPAAPTGHNGAPHGRAQAEDEFGLPAVPRAS 232

Query: 169 IRG 171
           +RG
Sbjct: 233 LRG 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322781|gb|AAG51378.1|AC011560_10 unknown protein; 22452-23721 [Arabidopsis thaliana]

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 153/169 (90%), Gaps = 1/169 (0%)

Query: 2   RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
           RPGPAQEA+KARAMRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSA
Sbjct: 53  RPGPAQEAVKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSA 112

Query: 62  NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           NKELKGMMKTVKIQDIDNLQDEMMDLMDVS EIQE+LGRSYN+PD +DED+LMGELDALE
Sbjct: 113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSSEIQESLGRSYNIPDGLDEDDLMGELDALE 172

Query: 122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQASI 169
           ADMG E EA G+PSYLQPD E D D+ELNLP AP+GH  A H R Q + 
Sbjct: 173 ADMGNETEADGMPSYLQPDTETDYDSELNLPAAPTGHNGAPHGRAQVNF 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2075800	235	VPS60.1 [Arabidopsis thaliana	0.970	0.706	0.844	1.1e-71
DICTYBASE|DDB_G0287993	215	vps60 "SNF7 family protein" [D	0.830	0.660	0.486	3.6e-34
ZFIN|ZDB-GENE-060503-60	251	chmp5a "charged multivesicular	0.900	0.613	0.420	3.8e-30
ZFIN|ZDB-GENE-040426-1374	220	chmp5b "charged multivesicular	0.748	0.581	0.488	7.9e-30
CGD|CAL0004860	218	CTA1 [Candida albicans (taxid:	0.871	0.683	0.426	3.4e-29
UNIPROTKB|Q5A4P1	218	CTA1 "Putative uncharacterized	0.871	0.683	0.426	3.4e-29
MGI|MGI:1924209	219	Chmp5 "charged multivesicular	0.900	0.703	0.446	5.6e-29
RGD|1305968	219	Chmp5 "charged multivesicular	0.900	0.703	0.446	5.6e-29
FB|FBgn0036740	226	CG6259 [Drosophila melanogaste	0.847	0.641	0.397	9.1e-29
UNIPROTKB|E1BSI4	219	CHMP5 "Uncharacterized protein	0.771	0.602	0.477	2.4e-28

TAIR|locus:2075800 VPS60.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 141/167 (84%), Positives = 153/167 (91%)

Query:     2 RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
             RPGPAQEA+KARAMRVLKQK+MYEGQRDMLYNQTFNLDQV+FA+EG+KDAQQTMTALKSA
Sbjct:    53 RPGPAQEAVKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSA 112

Query:    62 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
             NKELKGMMKTVKIQDIDNLQDEMMDLMDVS EIQE+LGRSYN+PD +DED+LMGELDALE
Sbjct:   113 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSSEIQESLGRSYNIPDGLDEDDLMGELDALE 172

Query:   122 ADMGMEDEA-GVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDRPQA 167
             ADMG E EA G+PSYLQPD E D D+ELNLP AP+GH  A H R QA
Sbjct:   173 ADMGNETEADGMPSYLQPDTETDYDSELNLPAAPTGHNGAPHGRAQA 219

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

DICTYBASE|DDB_G0287993 vps60 "SNF7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 70/144 (48%), Positives = 104/144 (72%)

Query:     2 RPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSA 61
             RPGPAQ AIK +A+RVL+QK+MYE QRD + + +FN++Q  FA+E ++D   T++A+K  
Sbjct:    52 RPGPAQNAIKQKAIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQG 111

Query:    62 NKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
              K++K  +K +KI+D+D++QDEM DL+D ++EIQE+LGR+Y  PD +DE EL  EL ++ 
Sbjct:   112 AKDMKTQLKHIKIEDVDDMQDEMQDLLDYNNEIQESLGRAYQTPDTLDESELEAELMSMG 171

Query:   122 ADMGMEDEAGVPSYLQPDKEPDLD 145
              ++  E EA +PSYL     P  D
Sbjct:   172 EEL--ELEASMPSYLMTPSVPTTD 193

GO:0015031 "protein transport" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

ZFIN|ZDB-GENE-060503-60 chmp5a "charged multivesicular body protein 5a" [Danio rerio (taxid:7955)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 71/169 (42%), Positives = 108/169 (63%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GP++  +K +AMRVLKQKRMYEGQRD L  Q+FN++Q  +  + ++D + T+ A+K 
Sbjct:    83 MRDGPSKNTVKQKAMRVLKQKRMYEGQRDQLSQQSFNMEQANYTIQSLRDTKTTVEAMKI 142

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VK+  I++LQD++ D+M+ ++E+QE L RSY  P+ IDEDEL  ELDAL
Sbjct:   143 GAKEMKKAYKQVKMDQIEDLQDQLEDMMEEANEVQEALSRSYGTPE-IDEDELEAELDAL 201

Query:   121 EADMGMEDEA--------------GVPSYLQPDKEPDLDAELNLPTAPS 155
               ++ ++D++              G+PS  + +K+  L  E  LP  P+
Sbjct:   202 GDELLLDDDSSYLDEASSAPSIPEGMPSDTKTNKDGVLVDEFGLPQIPA 250

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-040426-1374 chmp5b "charged multivesicular body protein 5b" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 63/129 (48%), Positives = 93/129 (72%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GP++  +K +AMRVLKQKRMYEGQRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MRDGPSKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKI 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I++LQD++ D+M+ ++E+QE L RSY  P+ IDED+L  ELDAL
Sbjct:   112 GAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYGTPE-IDEDDLEAELDAL 170

Query:   121 EADMGMEDE 129
               ++ ++D+
Sbjct:   171 GDELLLDDD 179

GO:0015031 "protein transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

CGD|CAL0004860 CTA1 [Candida albicans (taxid:5476)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 67/157 (42%), Positives = 103/157 (65%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GP + A+K +A+++L+Q++  E Q+D L NQ++N+ Q +  ++ +++   T+ A+K+
Sbjct:    51 MRDGPGKSALKQKAIKLLRQRKQIEAQKDQLENQSWNMTQASMTTDNLQNTMVTINAMKT 110

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             ANK LK     + I ++++LQDEM+DL+D S+E+QE L  SY+VPDDI E EL  EL+AL
Sbjct:   111 ANKSLKQTYGKINIDELEDLQDEMLDLIDKSNELQEALSTSYDVPDDISESELDAELEAL 170

Query:   121 EADMGMEDEA-----GVPSYLQPDKEPDLDAELNLPT 152
               ++  E+E      G PSYL  D EP   A   LPT
Sbjct:   171 GEEIDFENEMAESGIGAPSYLN-DTEPT--AADKLPT 204

GO:0003674 "molecular_function" evidence=ND

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=TAS

GO:0035690 "cellular response to drug" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0032511 "late endosome to vacuole transport via multivesicular body sorting pathway" evidence=IEA

GO:0030447 "filamentous growth" evidence=IEA

UNIPROTKB|Q5A4P1 CTA1 "Putative uncharacterized protein VPS60" [Candida albicans SC5314 (taxid:237561)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 67/157 (42%), Positives = 103/157 (65%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GP + A+K +A+++L+Q++  E Q+D L NQ++N+ Q +  ++ +++   T+ A+K+
Sbjct:    51 MRDGPGKSALKQKAIKLLRQRKQIEAQKDQLENQSWNMTQASMTTDNLQNTMVTINAMKT 110

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
             ANK LK     + I ++++LQDEM+DL+D S+E+QE L  SY+VPDDI E EL  EL+AL
Sbjct:   111 ANKSLKQTYGKINIDELEDLQDEMLDLIDKSNELQEALSTSYDVPDDISESELDAELEAL 170

Query:   121 EADMGMEDEA-----GVPSYLQPDKEPDLDAELNLPT 152
               ++  E+E      G PSYL  D EP   A   LPT
Sbjct:   171 GEEIDFENEMAESGIGAPSYLN-DTEPT--AADKLPT 204

GO:0003674 "molecular_function" evidence=ND

GO:0035690 "cellular response to drug" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=TAS

MGI|MGI:1924209 Chmp5 "charged multivesicular body protein 5" [Mus musculus (taxid:10090)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 75/168 (44%), Positives = 104/168 (61%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I++LQD++ D+M+ ++EIQE LGRSY  P+ +DED+L  ELDAL
Sbjct:   112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTPE-LDEDDLEAELDAL 170

Query:   121 ------EADMGMEDEAG----VPSYLQPD-KEPD--LDAELNLPTAPS 155
                   + D    DEA     +P  +  D K  D  L  E  LP  P+
Sbjct:   171 GDELLADEDSSYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPA 218

GO:0001919 "regulation of receptor recycling" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007040 "lysosome organization" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1305968 Chmp5 "charged multivesicular body protein 5" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 75/168 (44%), Positives = 104/168 (61%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKL 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I++LQD++ D+M+ ++EIQE LGRSY  P+ +DED+L  ELDAL
Sbjct:   112 GVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQEALGRSYGTPE-LDEDDLEAELDAL 170

Query:   121 ------EADMGMEDEAG----VPSYLQPD-KEPD--LDAELNLPTAPS 155
                   + D    DEA     +P  +  D K  D  L  E  LP  P+
Sbjct:   171 GDELLADEDSSYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPA 218

GO:0001919 "regulation of receptor recycling" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005829 "cytosol" evidence=IEA

GO:0007040 "lysosome organization" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0010008 "endosome membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

FB|FBgn0036740 CG6259 [Drosophila melanogaster (taxid:7227)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 60/151 (39%), Positives = 101/151 (66%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+ ++K +A+RVLKQK+ YE Q + L NQ+FN++Q  +A++ +KD Q T+ A+K 
Sbjct:    52 MREGPAKNSVKQKALRVLKQKKAYEQQAESLRNQSFNMEQANYAAQSLKDTQATVAAMKD 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               K++K   K + I  I+++QD+M D+ + + E+QE LGR+Y +P+ +D+D+L  ELDAL
Sbjct:   112 GVKQMKTEYKKINIDQIEDIQDDMADMFEQADEVQEALGRTYGMPE-VDDDDLQAELDAL 170

Query:   121 EADMGMEDEAG-----VPSYLQPDKEPDLDA 146
               ++ ++D+       V +   P +EP  D+
Sbjct:   171 GDEIALDDDTSYLDDVVKAPEAPSREPGADS 201

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E1BSI4 CHMP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 65/136 (47%), Positives = 94/136 (69%)

Query:     1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKS 60
             MR GPA+  +K +A+RVLKQKRMYE QRD L  Q+FN++Q  +  + +KD + T+ A+K 
Sbjct:    52 MREGPAKNTVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQALKDTKTTVDAMKL 111

Query:    61 ANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDAL 120
               KE+K   K VKI  I+++QD++ D+M+ ++E+QE L RSY  P+ IDED+L  ELDAL
Sbjct:   112 GVKEMKKAYKQVKIDQIEDIQDQLEDMMEEANEVQEALSRSYGTPE-IDEDDLEAELDAL 170

Query:   121 EADMGMEDEAGVPSYL 136
               ++ + DE    SYL
Sbjct:   171 GDEL-LADEDN--SYL 183

GO:0015031 "protein transport" evidence=IEA

GO:0001919 "regulation of receptor recycling" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
PTZ00464	211	PTZ00464, PTZ00464, SNF-7-like protein; Provisiona	1e-44
pfam03357	169	pfam03357, Snf7, Snf7	4e-34
PTZ00446	191	PTZ00446, PTZ00446, vacuolar sorting protein SNF7-	2e-04

>gnl|CDD|240425 PTZ00464, PTZ00464, SNF-7-like protein; Provisional

 Score =  146 bits (369), Expect = 1e-44
 Identities = 63/128 (49%), Positives = 91/128 (71%)

Query: 3   PGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSAN 62
            G  Q   K RAM++L+QKRMY+ Q+DM+  Q FN+DQ+ F +E +KD +  + A+K A 
Sbjct: 52  RGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAA 111

Query: 63  KELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA 122
           K LK   K + +  +++LQDE+ DL + + EIQE +GR+Y+VPDDIDEDE++GELDAL+ 
Sbjct: 112 KTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDF 171

Query: 123 DMGMEDEA 130
           DM  E +A
Sbjct: 172 DMEKEADA 179

Length = 211

>gnl|CDD|146145 pfam03357, Snf7, Snf7

 Score =  117 bits (296), Expect = 4e-34
 Identities = 52/125 (41%), Positives = 73/125 (58%)

Query: 11  KARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK 70
           K  A+ +LKQK+ YE Q D L  Q  NL+QV  A E  K  Q+ + A+K   K +K M K
Sbjct: 40  KDAALILLKQKKRYEKQLDQLDGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNK 99

Query: 71  TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEA 130
            + I  ID+L DE+ D M+ + EI E L  + +  D+ DE+EL  ELDAL  ++G E+  
Sbjct: 100 NMDIDKIDDLMDEIEDQMEKADEISEMLSDTLDDADEEDEEELDAELDALLDEIGDEELV 159

Query: 131 GVPSY 135
            +PS 
Sbjct: 160 ELPSA 164

This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function, vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins, such as activated cell surface receptors to the lumen of the vacuole/lysosome, either for degradation/downregulation, or in the case of hydrolases, for proper localisation, requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process, a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome, thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex, or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore, the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family. Length = 169

>gnl|CDD|240422 PTZ00446, PTZ00446, vacuolar sorting protein SNF7-like; Provisional

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 17  VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQD 76
           +LK+K++YE + + + N    L+      E +   +  + AL  A    K +   +  Q 
Sbjct: 72  LLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQK 131

Query: 77  IDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALE 121
           ++ + D + +  D+  EI + L  S+N+ +++D+DE+  ELD L+
Sbjct: 132 VEKIIDTIQENKDIQEEINQAL--SFNLLNNVDDDEIDKELDLLK 174

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PTZ00464	211	SNF-7-like protein; Provisional	100.0
KOG1656	221	consensus Protein involved in glucose derepression	100.0
KOG2910	209	consensus Uncharacterized conserved protein predic	99.97
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	99.97
KOG1655	218	consensus Protein involved in vacuolar protein sor	99.97
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	99.91
KOG2911	439	consensus Uncharacterized conserved protein [Funct	99.9
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	98.81
KOG3229	227	consensus Vacuolar sorting protein VPS24 [Intracel	98.37
KOG3231	208	consensus Predicted assembly/vacuolar sorting prot	98.01
KOG3232	203	consensus Vacuolar assembly/sorting protein DID2 [	97.55
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	96.72
PRK10698	222	phage shock protein PspA; Provisional	96.6
PF03357	171	Snf7: Snf7; InterPro: IPR005024 This is a family o	96.32
KOG1656	221	consensus Protein involved in glucose derepression	96.13
PTZ00464	211	SNF-7-like protein; Provisional	96.03
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	95.95
KOG1655	218	consensus Protein involved in vacuolar protein sor	94.07
COG5491	204	VPS24 Conserved protein implicated in secretion [C	93.64
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	92.75
KOG2910	209	consensus Uncharacterized conserved protein predic	92.53
KOG3230	224	consensus Vacuolar assembly/sorting protein DID4 [	88.82
PF05852	146	DUF848: Gammaherpesvirus protein of unknown functi	86.66
PTZ00446	191	vacuolar sorting protein SNF7-like; Provisional	85.29
COG5491	204	VPS24 Conserved protein implicated in secretion [C	82.02
PF08651	78	DASH_Duo1: DASH complex subunit Duo1; InterPro: IP	81.38

>PTZ00464 SNF-7-like protein; Provisional

Probab=100.00  E-value=3.1e-34  Score=234.98  Aligned_cols=152  Identities=45%  Similarity=0.741  Sum_probs=132.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (171)
Q Consensus         5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei   84 (171)
                      +.+++.|++|+.|||+||+||++++++.++++||++++++|+++++|.+||+||+.|+++||.+|++|++|+|+++||+|
T Consensus        54 ~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei  133 (211)
T PTZ00464         54 MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDEL  133 (211)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            66677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCC-CCCCcccccCCCCCCCCCCCCCCC
Q 030827           85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPD-KEPDLDAELNLPTAPSGHASAQHD  163 (171)
Q Consensus        85 ~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~~-~~~~~~~~~~lp~~p~~~~~~~~~  163 (171)
                      +|+++.++||+++|++++++++++||+||++||++|+.++..+.   +|+|+... ..|    .=.||.+|.....-+.|
T Consensus       134 ~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e~---~~~~l~~~~~~p----~~~~~~~~~~~~~~~~~  206 (211)
T PTZ00464        134 ADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKEA---DASYLADALAVP----GTKLPDVPTDEKQQAEG  206 (211)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccc---cchhhhccccCC----CCCCCCCCCcccccccc
Confidence            99999999999999998876668999999999999999876433   57777332 122    12677777766554444

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.9e-33  Score=222.27  Aligned_cols=142  Identities=30%  Similarity=0.410  Sum_probs=125.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 030827            9 AIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLM   88 (171)
Q Consensus         9 g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~   88 (171)
                      ++|+.|+.||||||+||++|.++.+.+.+|+.++..||+|..|.+|+++|..|+++||.+|+.||||+|+++||+|.|+.
T Consensus        58 kNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQq  137 (221)
T KOG1656|consen   58 KNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQ  137 (221)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 030827           89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQ  161 (171)
Q Consensus        89 e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~~~~~~~~~~~~lp~~p~~~~~~~  161 (171)
                      +.++||+++||.+++++.++|||||.+||++|+.+......-.++.       |  +  +.||+||+..++..
T Consensus       138 e~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~-------p--~--v~LP~vPs~~lPa~  199 (221)
T KOG1656|consen  138 EVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRA-------P--P--VPLPDVPSIALPAK  199 (221)
T ss_pred             HHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCC-------C--C--CCCCCCCccccCcc
Confidence            9999999999999998778999999999999998766544322221       1  1  26777777666544

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=99.97  E-value=1.6e-30  Score=207.79  Aligned_cols=150  Identities=30%  Similarity=0.438  Sum_probs=137.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (171)
Q Consensus         5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei   84 (171)
                      -+|.|.|.+|+.+||+|+++|..|.++++++.||++++..||++...+.|+++|+.||.+||++++.|++|+|+++|||.
T Consensus        49 lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt  128 (209)
T KOG2910|consen   49 LIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDT  128 (209)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc-cCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 030827           85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME-DEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQH  162 (171)
Q Consensus        85 ~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e-~~~~~p~~~~~~~~~~~~~~~~lp~~p~~~~~~~~  162 (171)
                      +|.+++++||+++|++.++.   .|+++|++||++|+.+...+ ..|.||+..     |.+|....+|++|+.+.++.+
T Consensus       129 ~ea~~YQ~Ein~~L~~~ls~---~dEddi~~EldaLese~~~e~e~PevPs~e-----p~lPek~~~~~~~~k~~~~~~  199 (209)
T KOG2910|consen  129 QEAIEYQDEINAILSGSLSA---EDEDDILAELDALESELEVEAELPEVPSTE-----PELPEKEDLEDVPEKEPAASE  199 (209)
T ss_pred             HHHHHHHHHHHHHHHhhccc---ccHHHHHHHHHHHHHHhhhhhhcCCCCCCC-----CCcccccccccccccccchhh
Confidence            99999999999999998874   79999999999999998874 559999754     334457789999998877664

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=99.97  E-value=2.3e-30  Score=209.00  Aligned_cols=118  Identities=22%  Similarity=0.361  Sum_probs=111.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 030827            6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM   85 (171)
Q Consensus         6 ~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~   85 (171)
                      .++|+|++|+.||||||+||++|+++.++++||++++++||+|++|.+||.||+.|+++||.+|+.|++|+||++||+|+
T Consensus        61 ~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~  140 (191)
T PTZ00446         61 VEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQ  140 (191)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            47788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhc
Q 030827           86 DLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMG  125 (171)
Q Consensus        86 E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~  125 (171)
                      |+++.++||+++|++++.  +++||+||++||++|+.+-.
T Consensus       141 E~~e~~~EIseaLs~~~~--~~~DEdELe~ELe~Le~e~l  178 (191)
T PTZ00446        141 ENKDIQEEINQALSFNLL--NNVDDDEIDKELDLLKEQTM  178 (191)
T ss_pred             HHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHHHHHH
Confidence            999999999999998643  46999999999999998643

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.5e-29  Score=201.67  Aligned_cols=162  Identities=51%  Similarity=0.751  Sum_probs=143.6

Q ss_pred             CCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 030827            1 MRPGPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNL   80 (171)
Q Consensus         1 ~~~g~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~l   80 (171)
                      ||+|+.++--|++|+++||+||+||.+.+.+.+|.||+++..+++++.+.+..+|.|||.|++.||..++.|+||+|+++
T Consensus        52 ~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~Iedl  131 (218)
T KOG1655|consen   52 TRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDL  131 (218)
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc--c-CCCCCCCCCCCCCCCcc-cccCCCCCCCC
Q 030827           81 QDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME--D-EAGVPSYLQPDKEPDLD-AELNLPTAPSG  156 (171)
Q Consensus        81 mdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e--~-~~~~p~~~~~~~~~~~~-~~~~lp~~p~~  156 (171)
                      .|+|.|.++..+||+++|+++++.+ ++|+++|++||++|..|..--  . ....|||+.|+..|..+ .+...|..|.+
T Consensus       132 QDem~Dlmd~a~EiQE~Lgr~y~~p-eide~dL~aELdaL~~E~d~~~~~~~~~~psyl~p~~~~~~~~de~~~~~~~~~  210 (218)
T KOG1655|consen  132 QDEMEDLMDQADEIQEVLGRNYNTP-DIDEADLDAELDALGQELDMLEEDENYLMPSYLAPANEPPAFIDEENAEGAEVD  210 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCC-CcCHHHHHHHHHHHHhHhhcccccccccchhhhCCCCCCCCCcccccCCCcccc
Confidence            9999999999999999999999987 599999999999997664422  2 25689999999876554 35566666666


Q ss_pred             CCCCCCC
Q 030827          157 HASAQHD  163 (171)
Q Consensus       157 ~~~~~~~  163 (171)
                      +--.|++
T Consensus       211 ~~g~p~~  217 (218)
T KOG1655|consen  211 EFGLPSG  217 (218)
T ss_pred             ccCCCCC
Confidence            5544443

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=99.91  E-value=8e-25  Score=170.63  Aligned_cols=124  Identities=34%  Similarity=0.479  Sum_probs=99.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (171)
Q Consensus         5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei   84 (171)
                      +.++|+|..|+.|||++|.++++++++.+++.+|++++.+|+++..+..|+.+|+.|+++|+++++.|++++|+++|++|
T Consensus        34 ~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~  113 (171)
T PF03357_consen   34 AIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALKKINKQINLDKVEKLMDDF  113 (171)
T ss_dssp             HHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhcccc
Q 030827           85 MDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMED  128 (171)
Q Consensus        85 ~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~  128 (171)
                      ++.++.+++|+++|++.++..+++||+||++||++|+.|...+.
T Consensus       114 ~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~  157 (171)
T PF03357_consen  114 QEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE  157 (171)
T ss_dssp             HHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred             HHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999997743246899999999999999988654

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG2911 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.90  E-value=4.3e-23  Score=181.82  Aligned_cols=124  Identities=21%  Similarity=0.311  Sum_probs=116.8

Q ss_pred             ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHH
Q 030827            4 GPAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK-TVKIQDIDNLQD   82 (171)
Q Consensus         4 g~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~-~~~id~Ve~lmd   82 (171)
                      .+.|.|.|+.|+.|||+||++||.++++..++.||++++++|.+|++|+.|+.||++|+.|||.+++ ..+.|+||++||
T Consensus       265 ~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ld  344 (439)
T KOG2911|consen  265 QALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLD  344 (439)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHH
Confidence            3578999999999999999999999999999999999999999999999999999999999999998 458999999999


Q ss_pred             HHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030827           83 EMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME  127 (171)
Q Consensus        83 ei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e  127 (171)
                      ++.|.++.++||+++|+.+...+.+++|++||+||+.|+.+..+.
T Consensus       345 ev~et~d~~~EV~~~la~~~~~~~d~~de~lEkEL~~L~~D~~k~  389 (439)
T KOG2911|consen  345 EVNETLDRQEEVEDALASYNVNNIDFEDEDLEKELEDLEADEKKN  389 (439)
T ss_pred             HHHHHHhhHHHHHHHHhcCCCCCCccchHHHHHHHHHHHhccccC
Confidence            999999999999999999875557899999999999999988764

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.2e-07  Score=77.02  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=100.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 030827            6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM   85 (171)
Q Consensus         6 ~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~   85 (171)
                      .++|+-..++..-|.--+...++.+..++..+|+.+...|...+++..+..+|+.++++|..+|+.|++-.+.++|.+++
T Consensus        50 AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFe  129 (224)
T KOG3230|consen   50 AKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFE  129 (224)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence            45666555555555555666778889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030827           86 DLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME  127 (171)
Q Consensus        86 E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e  127 (171)
                      .+.+.++...++|+...+  +.++++|=|+|-++|.+.+.+|
T Consensus       130 kQse~Mdm~~Emm~daID--dal~~~edEEEtd~lvnqVLDE  169 (224)
T KOG3230|consen  130 KQSEIMDMKEEMMDDAID--DALGDDEDEEETDDLVNQVLDE  169 (224)
T ss_pred             HHHHHHHHHHHHHHHHHH--HhhcccchhHHHHHHHHHHHHH
Confidence            999999999999988654  2345555678888888776665

>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=2e-05  Score=64.53  Aligned_cols=131  Identities=17%  Similarity=0.182  Sum_probs=114.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (171)
Q Consensus         5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei   84 (171)
                      ++++|++..++.+-|.--...+...+++.....|-.+.+.+..+-....+...|..+..+||.+++-+.+=.+-.+|-++
T Consensus        51 aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrel  130 (227)
T KOG3229|consen   51 AAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMREL  130 (227)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            57888999999888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhccCCC-CC-CCCCHHHHHHHHHHHHHhhccccCCCCCCC
Q 030827           85 MDLMDVSHEIQETLGRSYN-VP-DDIDEDELMGELDALEADMGMEDEAGVPSY  135 (171)
Q Consensus        85 ~E~~e~~~EI~eaLs~~~~-~~-~~~DedELe~EL~~Le~E~~~e~~~~~p~~  135 (171)
                      .-.+.+.--|.+++...+. +. .+..+++.+.|.+.+..++..+..+++|..
T Consensus       131 SkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p~a  183 (227)
T KOG3229|consen  131 SKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAPLA  183 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCCcc
Confidence            9999999999998886542 11 223567788888888889888887777753

>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00029  Score=56.29  Aligned_cols=129  Identities=13%  Similarity=0.123  Sum_probs=101.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 030827            6 AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMM   85 (171)
Q Consensus         6 ~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~   85 (171)
                      ...|++..|+.+-|+--.+.+|-.++++....+..+-.+-....++..+-.||-...+.|+.+|+.|+++++-..|-+++
T Consensus        49 Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~~~tmr~FQ  128 (208)
T KOG3231|consen   49 AAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKTLQTMRNFQ  128 (208)
T ss_pred             HHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhccCCCC--CCCCCHHHHHHHHHHHHHhhcccc---CCCCCC
Q 030827           86 DLMDVSHEIQETLGRSYNV--PDDIDEDELMGELDALEADMGMED---EAGVPS  134 (171)
Q Consensus        86 E~~e~~~EI~eaLs~~~~~--~~~~DedELe~EL~~Le~E~~~e~---~~~~p~  134 (171)
                      -...+++--.+++...++.  ...-|++|-.+=.++...|+.-|.   ..++|+
T Consensus       129 ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~~P~  182 (208)
T KOG3231|consen  129 KANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAKAPS  182 (208)
T ss_pred             HHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhccCCc
Confidence            8887776555555543210  012355555555555555555443   267775

>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.02  Score=46.20  Aligned_cols=117  Identities=14%  Similarity=0.197  Sum_probs=83.3

Q ss_pred             hhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 030827            5 PAQEAIKARAMR----VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNL   80 (171)
Q Consensus         5 ~~~~g~K~~Al~----~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~l   80 (171)
                      ++++|+.+.|..    +.|+|.    +--++......+..+...+++|.+...|-..|....+.|....+.||+++|-.+
T Consensus        42 Ai~kgN~dvArIyAeNAIRkkn----e~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~  117 (203)
T KOG3232|consen   42 AIQKGNMDVARIYAENAIRKKN----EAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQL  117 (203)
T ss_pred             HHHhcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            566677666654    344443    333455667788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHh----ccCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030827           81 QDEMMDLMDVSHEIQETL----GRSYNVPDDIDEDELMGELDALEADMGME  127 (171)
Q Consensus        81 mdei~E~~e~~~EI~eaL----s~~~~~~~~~DedELe~EL~~Le~E~~~e  127 (171)
                      ||.+.-+-++.+--...+    +++...  ..+.++++.=+.+...|...|
T Consensus       118 MDkFE~qFedldvqt~~me~~m~~st~l--~tpq~~Vd~Lmq~vADeaGlE  166 (203)
T KOG3232|consen  118 MDKFEKQFEDLDVQTEVMEKAMSGSTAL--STPQGDVDSLMQQVADEAGLE  166 (203)
T ss_pred             HHHHHHHhhhhhhHHHHHHHhccCcccc--cCChhHHHHHHHHHHHHhchh
Confidence            999999888877655555    443322  245555444444444444433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=96.72  E-value=0.073  Score=43.35  Aligned_cols=113  Identities=18%  Similarity=0.194  Sum_probs=82.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 030827            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLD-----------QVAFASEGIKDAQQTMTALKSANKELKGMMK---   70 (171)
Q Consensus         5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe-----------~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~---   70 (171)
                      ++++|+-..|+.+|.+|+.++.++..+..++..+.           .+-.+|...+.....+.+-....++.++++.   
T Consensus        77 Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~  156 (221)
T PF04012_consen   77 ALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALA  156 (221)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46788999999999999999998888777765444           4555667778888888888888888888875   


Q ss_pred             cCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHH
Q 030827           71 TVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA  122 (171)
Q Consensus        71 ~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~  122 (171)
                      .++++.....++.|.+.++..+--.++......     +...++.+|+++..
T Consensus       157 ~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~~-----~~~~~e~~l~~~~~  203 (221)
T PF04012_consen  157 SFSVSSAMDSFERMEEKIEEMEARAEASAELAD-----SDQDLEAELEELER  203 (221)
T ss_pred             cCCccchHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccHHHHHHHhcC
Confidence            456677777777777777776666666654321     12237777777654

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10698 phage shock protein PspA; Provisional

Probab=96.60  E-value=0.11  Score=42.97  Aligned_cols=121  Identities=15%  Similarity=0.156  Sum_probs=80.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-
Q 030827            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNL-----------DQVAFASEGIKDAQQTMTALKSANKELKGMMKTV-   72 (171)
Q Consensus         5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nL-----------e~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~-   72 (171)
                      ++.+|+-.-|+.+|.+|+.++..+..+..++...           ..+..+|+.++.-..++.+=..+..+.++++..+ 
T Consensus        78 Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~  157 (222)
T PRK10698         78 ALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD  157 (222)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678999999999999999998877776665544           4455668888999999999999999999988654 


Q ss_pred             --ChhHHHHHHHHHHHHHHhHHHHHHHhccCC--CCCCCC----CHHHHHHHHHHHHHhhc
Q 030827           73 --KIQDIDNLQDEMMDLMDVSHEIQETLGRSY--NVPDDI----DEDELMGELDALEADMG  125 (171)
Q Consensus        73 --~id~Ve~lmdei~E~~e~~~EI~eaLs~~~--~~~~~~----DedELe~EL~~Le~E~~  125 (171)
                        +.+.--.-++.|.+-++..+--.+++.-..  ++.+.+    .++++++||+.|-..+.
T Consensus       158 ~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~LK~~~~  218 (222)
T PRK10698        158 SGKLDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAALKAKMK  218 (222)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHHHHHHhc
Confidence              443333444445555555554444542210  110000    12357788888877654

>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7

Probab=96.32  E-value=0.0026  Score=49.17  Aligned_cols=132  Identities=22%  Similarity=0.233  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH--
Q 030827           10 IKARAMRVLKQK-----RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQD--   82 (171)
Q Consensus        10 ~K~~Al~~LkrK-----K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmd--   82 (171)
                      .+..|+.++|+.     +.|=+.+-.+..++.++..+..+++......+.......-..+|+...+.|.  ++..-++  
T Consensus        27 ~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk--~~~~~i~~~  104 (171)
T PF03357_consen   27 LEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALK--KINKQINLD  104 (171)
T ss_dssp             CHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHH--HHHHSTTSC
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhh
Confidence            355666666643     3455667777888888888888888888888888888888888887766552  3332222  


Q ss_pred             HHHHHHHhHHHHHH---HhccCCCCCCCCC--HHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 030827           83 EMMDLMDVSHEIQE---TLGRSYNVPDDID--EDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGH  157 (171)
Q Consensus        83 ei~E~~e~~~EI~e---aLs~~~~~~~~~D--edELe~EL~~Le~E~~~e~~~~~p~~~~~~~~~~~~~~~~lp~~p~~~  157 (171)
                      ++.+.++...+..+   .++..++.  .++  ++.-++||++..+++..+......        +    ...||++|+++
T Consensus       105 ~v~~~~d~~~e~~e~~~ei~~~l~~--~~~~~~~~dd~ele~eL~~l~~e~~~~~~--------~----~~~lp~~P~~~  170 (171)
T PF03357_consen  105 KVEKLMDDFQEEMEDQDEISEALSD--SMDQVDDVDDEELEEELEQLEDEIEEEEE--------E----KQQLPSVPSTE  170 (171)
T ss_dssp             CHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--------------SS-SS---HH-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHc--cccCCCCCCHHHHHHHHHHHHHHHhhhhh--------c----cccCCcCCCCC
Confidence            33344433333333   33343432  232  566778888887777766543222        1    33789999875

The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.

>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=0.089  Score=43.36  Aligned_cols=103  Identities=18%  Similarity=0.228  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccC-ChhHHHHHHHHHHHHHHhHHH
Q 030827           17 VLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKG--MMKTV-KIQDIDNLQDEMMDLMDVSHE   93 (171)
Q Consensus        17 ~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~--~~~~~-~id~Ve~lmdei~E~~e~~~E   93 (171)
                      |=+.--.+...++++.-|+..|+..-.+.|....-..--+|||.....|--  +..-| +|.+-.+++.+      .++-
T Consensus        73 ~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~e------IseA  146 (221)
T KOG1656|consen   73 YEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEE------ISEA  146 (221)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH------HHHH
Confidence            334445566777888888888888888888777777777788877666532  32333 23333334443      4456


Q ss_pred             HHHHhccCCCCCCCCCHHHHHHHHH--HHHHhhcc
Q 030827           94 IQETLGRSYNVPDDIDEDELMGELD--ALEADMGM  126 (171)
Q Consensus        94 I~eaLs~~~~~~~~~DedELe~EL~--~Le~E~~~  126 (171)
                      |+.=++-+..+ |+.+-..=.+||+  +|..++..
T Consensus       147 iS~Pvg~~a~~-DEDEL~~ELdeLeqeeld~~ll~  180 (221)
T KOG1656|consen  147 ISAPVGFGADF-DEDELMAELDELEQEELDKELLD  180 (221)
T ss_pred             HhCcccccccc-CHHHHHHHHHHHHHHHHHHHHhc
Confidence            67766643333 2333222245555  45555554

>PTZ00464 SNF-7-like protein; Provisional

Probab=96.03  E-value=0.31  Score=40.23  Aligned_cols=130  Identities=15%  Similarity=0.109  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hh---HHHHHHHHHHHHHHhHHHHHHHhc
Q 030827           24 YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-IQ---DIDNLQDEMMDLMDVSHEIQETLG   99 (171)
Q Consensus        24 ~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~-id---~Ve~lmdei~E~~e~~~EI~eaLs   99 (171)
                      +-+..-.+..++.++...+++++...+..+....=.....+|+.-++.|. +.   +|++ ++++.+.+.++-+.++=|+
T Consensus        66 ~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~-Vd~l~Dei~E~~e~~~EI~  144 (211)
T PTZ00464         66 LLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDK-VEDLQDELADLYEDTQEIQ  144 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence            33445556777888888888888888888877777777777877766552 11   1333 2445555555555566666


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCC
Q 030827          100 RSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSGHASAQHDR  164 (171)
Q Consensus       100 ~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~~~~~~~~~~~~lp~~p~~~~~~~~~~  164 (171)
                      ..++.+-.+.++.=+.||++=..++..+..    -...|+-      --..|.||++.++..++.
T Consensus       145 e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~----~e~~~~~------l~~~~~~p~~~~~~~~~~  199 (211)
T PTZ00464        145 EIMGRAYDVPDDIDEDEMLGELDALDFDME----KEADASY------LADALAVPGTKLPDVPTD  199 (211)
T ss_pred             HHHhCCCCCCCCCCHHHHHHHHHHHHHHHh----ccccchh------hhccccCCCCCCCCCCCc
Confidence            666543222233224444444444443321    1112222      225788888887766654

>TIGR02977 phageshock_pspA phage shock protein A

Probab=95.95  E-value=0.74  Score=37.77  Aligned_cols=94  Identities=9%  Similarity=0.038  Sum_probs=60.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 030827            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQ-----------VAFASEGIKDAQQTMTALKSANKELKGMMKT--   71 (171)
Q Consensus         5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~-----------~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~--   71 (171)
                      ++++|+-..|+.+|.+|+.++.++..+..++..+..           +-..|+.++.....+.+=.....+.+.++..  
T Consensus        78 Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~  157 (219)
T TIGR02977        78 ALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLD  157 (219)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567899999999999999999998777766665544           4444555666666665555566666666543  


Q ss_pred             -CChhHHHHHHHHHHHHHHhHHHHHHHh
Q 030827           72 -VKIQDIDNLQDEMMDLMDVSHEIQETL   98 (171)
Q Consensus        72 -~~id~Ve~lmdei~E~~e~~~EI~eaL   98 (171)
                       ++.+.--..++.|.+-++..+--.++.
T Consensus       158 ~~~~~~a~~~fer~e~ki~~~ea~aea~  185 (219)
T TIGR02977       158 SGRSDEAMARFEQYERRVDELEAQAESY  185 (219)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence             455544455555554444444333333

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.07  E-value=0.87  Score=37.47  Aligned_cols=110  Identities=20%  Similarity=0.204  Sum_probs=80.0

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----ChhHHHHHHHHHHHHH
Q 030827           14 AMRVLKQKRM-YEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTV----KIQDIDNLQDEMMDLM   88 (171)
Q Consensus        14 Al~~LkrKK~-~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~----~id~Ve~lmdei~E~~   88 (171)
                      |+..||+|.+ .-++.-.+.++..+|.++-+..+.|....+-++--.....|||.-++.|    .-=+|++| ++++|.|
T Consensus        57 aq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~I-edlQDem  135 (218)
T KOG1655|consen   57 AQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKI-EDLQDEM  135 (218)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHH-HHHHHHH
Confidence            5666776654 3466777899999999999999999999999998888899999888765    44456654 6777777


Q ss_pred             HhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 030827           89 DVSHEIQETLGRSYNVPDDIDEDELMGELDALEADM  124 (171)
Q Consensus        89 e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~  124 (171)
                      ++.=+..+=|...++-..+.-|.+..+.+++|....
T Consensus       136 ~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~  171 (218)
T KOG1655|consen  136 EDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALG  171 (218)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHH
Confidence            777777777777676544555655444444554433

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=93.64  E-value=3  Score=34.38  Aligned_cols=106  Identities=11%  Similarity=0.103  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHhHHH-------
Q 030827           22 RMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-IQDIDNLQDEMMDLMDVSHE-------   93 (171)
Q Consensus        22 K~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~-id~Ve~lmdei~E~~e~~~E-------   93 (171)
                      +.+-+.+-++..+...|...+..+.+.......--+|.....-+......|+ +..|.++++.+.-+....+-       
T Consensus        38 ~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~  117 (204)
T COG5491          38 RRLAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLET  117 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445566666666666666666655544444445555555555545554 56666666655444433333       


Q ss_pred             HHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 030827           94 IQETLGRSYNVPDDIDEDELMGELDALEADMGME  127 (171)
Q Consensus        94 I~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e  127 (171)
                      +.+.+.-..+.+...+.+++++++..+..|...+
T Consensus       118 m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~le  151 (204)
T COG5491         118 MDELMDVVVGDPVLEDLEELDELVNKVLPEIGLE  151 (204)
T ss_pred             HHHHhccCccchhhhhHHHHHHHHHhhchhhhhh
Confidence            3333333222111234555555555555555444

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=92.75  E-value=5.1  Score=33.40  Aligned_cols=114  Identities=14%  Similarity=0.091  Sum_probs=77.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 030827            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQV-----------AFASEGIKDAQQTMTALKSANKELKGMMKT--   71 (171)
Q Consensus         5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~-----------~~~IE~a~~n~~v~~alk~g~~aLK~~~~~--   71 (171)
                      ++.+|+-.-|..+|-+++.|++++..+..++..+...           -.+|......+.++.+=....++-+++++.  
T Consensus        78 Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~  157 (225)
T COG1842          78 ALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLG  157 (225)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567888999999999999999888777666554443           345666777888888888888888777753  


Q ss_pred             -CChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHH
Q 030827           72 -VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEA  122 (171)
Q Consensus        72 -~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~  122 (171)
                       ++.+.-...++.|.+-++....-.++.+.-. .   ...++|+.||+.+..
T Consensus       158 ~~s~~sa~~~fer~e~kiee~ea~a~~~~el~-~---~~~~dl~~e~a~~~~  205 (225)
T COG1842         158 GGSSSSAMAAFERMEEKIEEREARAEAAAELA-E---GSGDDLDKEFAQAGA  205 (225)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHhHHhh-c---cCcccHHHHHHHhcc
Confidence             4555566666666666666665555555310 0   233456666666654

>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]

Probab=92.53  E-value=4.7  Score=33.11  Aligned_cols=37  Identities=14%  Similarity=-0.018  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030827           33 NQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMM   69 (171)
Q Consensus        33 ~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~   69 (171)
                      .-+.+....+.+||+..++.+.-..-+..-..||.=|
T Consensus        70 ~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN  106 (209)
T KOG2910|consen   70 ELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGN  106 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555556666666555555554444444444433

>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.82  E-value=12  Score=30.90  Aligned_cols=117  Identities=16%  Similarity=0.325  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcc-CChhHHHHHHHH
Q 030827           10 IKARAMRVLKQKRMYEGQ---RDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKG--MMKT-VKIQDIDNLQDE   83 (171)
Q Consensus        10 ~K~~Al~~LkrKK~~Ek~---L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~--~~~~-~~id~Ve~lmde   83 (171)
                      -|-.|+-+.|-|.+..+.   ..++.+....++++.++-..++.-+-+-+||..-|+-|.-  +.+- +.+++--++||-
T Consensus        58 ~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm  137 (224)
T KOG3230|consen   58 VKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDM  137 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHH
Confidence            467888999988887765   4566777788899999999999999999999998887653  3332 378888888888


Q ss_pred             HHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccc---cCCCCCC
Q 030827           84 MMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGME---DEAGVPS  134 (171)
Q Consensus        84 i~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e---~~~~~p~  134 (171)
                      -+|.+.  +-|+++|+.      +.||+|-++=-++...|+.-.   .+.+.|+
T Consensus       138 ~~Emm~--daIDdal~~------~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~  183 (224)
T KOG3230|consen  138 KEEMMD--DAIDDALGD------DEDEEETDDLVNQVLDEIGVDLASQLSSLPS  183 (224)
T ss_pred             HHHHHH--HHHHHhhcc------cchhHHHHHHHHHHHHHHcccHHHHhccCcc
Confidence            777765  457777764      356777776667777666543   2356666

>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae

Probab=86.66  E-value=13  Score=29.20  Aligned_cols=28  Identities=25%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             CChhHHHHHHHHHHHHHHhHHHHHHHhc
Q 030827           72 VKIQDIDNLQDEMMDLMDVSHEIQETLG   99 (171)
Q Consensus        72 ~~id~Ve~lmdei~E~~e~~~EI~eaLs   99 (171)
                      ..++.+|++.|.+.|..++.+..-+.+.
T Consensus        86 ~kv~~~E~L~d~v~eLkeel~~el~~l~  113 (146)
T PF05852_consen   86 KKVEDLEKLTDRVEELKEELEFELERLQ  113 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678888888888777766665555554

>PTZ00446 vacuolar sorting protein SNF7-like; Provisional

Probab=85.29  E-value=17  Score=29.70  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-h---hHHHHHHHHHHHHHHhHHHHHHHhccCC
Q 030827           27 QRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVK-I---QDIDNLQDEMMDLMDVSHEIQETLGRSY  102 (171)
Q Consensus        27 ~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~-i---d~Ve~lmdei~E~~e~~~EI~eaLs~~~  102 (171)
                      .--.+..++.++..++++++......+....=.....+|+.-++.|. +   =+||+ +|++.|.++++-+.++=++..+
T Consensus        75 rKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idk-Vd~lmDei~E~~e~~~EIseaL  153 (191)
T PTZ00446         75 RKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQK-VEKIIDTIQENKDIQEEINQAL  153 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            33445556666666666666666666655555555555555554431 1   11222 2444444445555555555554


Q ss_pred             C
Q 030827          103 N  103 (171)
Q Consensus       103 ~  103 (171)
                      +
T Consensus       154 s  154 (191)
T PTZ00446        154 S  154 (191)
T ss_pred             c
Confidence            3

>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]

Probab=82.02  E-value=27  Score=28.78  Aligned_cols=75  Identities=8%  Similarity=-0.037  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-C-ChhHHHHHHHHHHHHHHhHHHHHHH
Q 030827           23 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMK--T-V-KIQDIDNLQDEMMDLMDVSHEIQET   97 (171)
Q Consensus        23 ~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~--~-~-~id~Ve~lmdei~E~~e~~~EI~ea   97 (171)
                      .+.++.++++.....|+.+-..+........|...|..++..+..+..  . + -++.+...|+-.+.-++...+..+.
T Consensus        46 ~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v  124 (204)
T COG5491          46 KLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDV  124 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            456677788888888888888888888888888877777777774432  1 1 2344444444444333444443333

>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []

Probab=81.38  E-value=10  Score=26.49  Aligned_cols=65  Identities=11%  Similarity=0.132  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHhHHHHHHHhccCC
Q 030827           23 MYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSY  102 (171)
Q Consensus        23 ~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~  102 (171)
                      .+++.|+.+...-..++.+...|+.+..+...|..               .++.-..++|..-.-+..++.++++|..+.
T Consensus         2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~---------------~~~~t~~LLd~w~~IlSQte~~~~Ll~dp~   66 (78)
T PF08651_consen    2 ALEKELEQLRKINPVIEGLIETLRSAKSNMNRVQE---------------TVESTNTLLDKWIRILSQTEHTQRLLLDPE   66 (78)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            35677777777777777777777777766554431               133555566666666777788888887653

In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	4e-05
3uly_B	69	Charged multivesicular BODY protein 5; beta-hairpi	3e-04

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens} Length = 104

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 72  VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAG 131
           + I  +D L  ++ D  +++ EI   + +     ++ DEDELM EL+ LE +   ++   
Sbjct: 3   MDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLE 62

Query: 132 VPS 134
           +  
Sbjct: 63  ISG 65

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 36/159 (22%)

Query: 8   EAIKARAMRVLKQKRMYEGQRDMLYN--QTFNLDQVAFASEGIKDAQQTMTALKSANKEL 65
             IK    +     RMY  QRD LYN  Q F    V+          Q    L+ A  EL
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--------RLQPYLKLRQALLEL 147

Query: 66  K--------GMM---KTVKIQDIDNLQDEMMDLMDVSHEIQETL-GRSY--NVPDDIDED 111
           +        G++   KT     +D             +++Q  +  + +  N+ +    +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVA--LDVCLS---------YKVQCKMDFKIFWLNLKNCNSPE 196

Query: 112 ELMGELDALEADMGMEDEAGV-PSYLQPDKEPDLDAELN 149
            ++  L  L   +     +    S     +   + AEL 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Length = 179

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 6   AQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKEL 65
           A++  K   + + K+          LY    +++ V    +      +   +L+ + + +
Sbjct: 48  AKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVM 107

Query: 66  KGMMKTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDID--EDELMGELDALEAD 123
           K M   VKI +I     E+   M  +  I+E L  ++   DD +  E+E   E+D +  +
Sbjct: 108 KAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFE 167

Query: 124 MGMEDEAGVPS 134
           +        PS
Sbjct: 168 ITAGALGKAPS 178

>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B Length = 69

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 12/57 (21%)

Query: 100 RSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELNLPTAPSG 156
           RSY  P+ +DED+L  ELDAL  ++  +++    SY        LD   + P  P G
Sbjct: 1   RSYGTPE-LDEDDLEAELDALGDELLADED---SSY--------LDEAASAPAIPEG 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
3um3_B	104	Charged multivesicular BODY protein 4B; alpha-heli	99.67
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	99.51
2luh_B	59	Vacuolar protein-sorting-associated protein 60; VT	99.26
3frt_A	218	Charged multivesicular BODY protein 3; ESCRT, ESCR	99.04
2lxm_B	57	Charged multivesicular BODY protein 5; MIT, protei	98.85
4abm_A	79	Charged multivesicular BODY protein 4B; cell cycle	98.79
3uly_B	69	Charged multivesicular BODY protein 5; beta-hairpi	98.54
2gd5_A	179	Charged multivesicular BODY protein 3; CHMP3, ESCR	86.42

>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}

Probab=99.67  E-value=2.1e-16  Score=115.60  Aligned_cols=83  Identities=25%  Similarity=0.482  Sum_probs=66.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcccccC
Q 030827           70 KTVKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQPDKEPDLDAELN  149 (171)
Q Consensus        70 ~~~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~~~~~~~~~~~~  149 (171)
                      ++|+||+|+++||+++|++++++||+++|+++++++.++|++||++||++|+.+...+....++.   +.       .+.
T Consensus         1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~---~~-------~~~   70 (104)
T 3um3_B            1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISG---PE-------TVP   70 (104)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCC---CC-------CCC
Confidence            36899999999999999999999999999999876678999999999999999876554433331   11       236


Q ss_pred             CCCCCCCCCCCCC
Q 030827          150 LPTAPSGHASAQH  162 (171)
Q Consensus       150 lp~~p~~~~~~~~  162 (171)
                      ||+||++.++..+
T Consensus        71 LP~vP~~~lp~~p   83 (104)
T 3um3_B           71 LPNVPSIALPSKP   83 (104)
T ss_pred             CCCCCCCcCCCCc
Confidence            8888888766443

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=99.51  E-value=1.7e-15  Score=119.90  Aligned_cols=116  Identities=18%  Similarity=0.238  Sum_probs=83.5

Q ss_pred             hhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 030827            5 PAQEAIKA----RAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNL   80 (171)
Q Consensus         5 ~~~~g~K~----~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~l   80 (171)
                      +.++|++.    .|+.++|.||+    ..++..+..+|+.+.++++++.++..|..+|+.++++|+.+|+.|++++|..+
T Consensus        47 a~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~  122 (179)
T 2gd5_A           47 AAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQAT  122 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34555544    68888888875    67778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 030827           81 QDEMMDLMDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGM  126 (171)
Q Consensus        81 mdei~E~~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~  126 (171)
                      |+++.++++++++|+++|+.+++.  ..|+++.++|.+++...+..
T Consensus       123 M~e~~~e~~~~~~~~E~m~d~~~~--~~~~~~~eee~d~~v~kVl~  166 (179)
T 2gd5_A          123 MRELSKEMMKAGIIEEMLEDTFES--MDDQEEMEEEAEMEIDRILF  166 (179)
T ss_dssp             HHHHHHHHHHHTSCC---------------------CTTHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh--cccCCCcHHHHHHHHHHHHH
Confidence            999999999999999999988753  12334444555555544443

>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}

Probab=99.26  E-value=1e-12  Score=86.33  Aligned_cols=54  Identities=41%  Similarity=0.617  Sum_probs=50.3

Q ss_pred             CChhHHHHHHHHHHHHHHhHHHHHHHhccCCCCC--CCCCHHHHHHHHHHHHHhhc
Q 030827           72 VKIQDIDNLQDEMMDLMDVSHEIQETLGRSYNVP--DDIDEDELMGELDALEADMG  125 (171)
Q Consensus        72 ~~id~Ve~lmdei~E~~e~~~EI~eaLs~~~~~~--~~~DedELe~EL~~Le~E~~  125 (171)
                      |+||+|++++|+|.+.++.++||+++|++++++|  +++|++||++||++|..|-+
T Consensus         1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~~   56 (59)
T 2luh_B            1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQEDF   56 (59)
T ss_dssp             CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcccc
Confidence            5799999999999999999999999999999887  47999999999999998754

>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}

Probab=99.04  E-value=1.1e-10  Score=95.20  Aligned_cols=131  Identities=18%  Similarity=0.202  Sum_probs=92.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 030827            5 PAQEAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASEGIKDAQQTMTALKSANKELKGMMKTVKIQDIDNLQDEM   84 (171)
Q Consensus         5 ~~~~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE~a~~n~~v~~alk~g~~aLK~~~~~~~id~Ve~lmdei   84 (171)
                      ++++|++..|+.|-|---...++..+++....+|..+.+++.++.++..|..+|+.++++|+.+|+.|++.+|..+|++|
T Consensus        47 aakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~ef  126 (218)
T 3frt_A           47 AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMREL  126 (218)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56788888888888877777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhccCCCC--CCCCCHHHHHHHHHHHHHhhccccCCCCCCC
Q 030827           85 MDLMDVSHEIQETLGRSYNV--PDDIDEDELMGELDALEADMGMEDEAGVPSY  135 (171)
Q Consensus        85 ~E~~e~~~EI~eaLs~~~~~--~~~~DedELe~EL~~Le~E~~~e~~~~~p~~  135 (171)
                      ..++++.+-+.++|...++.  .++.+++|.+.|.+....|+.....+.+|+.
T Consensus       127 ekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~~l~~~p~~  179 (218)
T 3frt_A          127 SKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSK  179 (218)
T ss_dssp             HHHHHHHSCC----------------CTTSTTTHHHHHHHTC-----------
T ss_pred             HHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHhHhhcCCCC
Confidence            99999988888888876542  1223456777888888888876666666643

>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}

Probab=98.85  E-value=1.9e-10  Score=75.11  Aligned_cols=47  Identities=45%  Similarity=0.720  Sum_probs=26.5

Q ss_pred             HHhHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 030827           88 MDVSHEIQETLGRSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQP  138 (171)
Q Consensus        88 ~e~~~EI~eaLs~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~~  138 (171)
                      ++..+||+++|+++++++ ++||+||++||++|+.|...+   ..|||+..
T Consensus         1 ~e~a~EIqealsr~~g~~-diDEdEL~aELe~LeqE~~~~---~~~syL~~   47 (57)
T 2lxm_B            1 MEDANEINEALSRSYGTP-ELDEDDLEAELDALGDELLAD---EDSSYLDE   47 (57)
T ss_dssp             ---------------CCC-CCCHHHHHHHHHHHHHHHHHC---SCCHHHHH
T ss_pred             CchHHHHHHHHcCCCCCC-CCCHHHHHHHHHHHHHHHhhc---ccchHHHH
Confidence            467899999999999887 799999999999999987643   57888743

>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}

Probab=98.79  E-value=5.8e-09  Score=72.57  Aligned_cols=39  Identities=26%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030827            8 EAIKARAMRVLKQKRMYEGQRDMLYNQTFNLDQVAFASE   46 (171)
Q Consensus         8 ~g~K~~Al~~LkrKK~~Ek~L~k~~~~l~nLe~~~~~IE   46 (171)
                      .++|.+|+.||||||+||++|++++++++||++++++||
T Consensus        41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE   79 (79)
T 4abm_A           41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE   79 (79)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            456889999999999999999999999999999999985

>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B

Probab=98.54  E-value=1.4e-07  Score=63.63  Aligned_cols=34  Identities=47%  Similarity=0.806  Sum_probs=26.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 030827          100 RSYNVPDDIDEDELMGELDALEADMGMEDEAGVPSYLQ  137 (171)
Q Consensus       100 ~~~~~~~~~DedELe~EL~~Le~E~~~e~~~~~p~~~~  137 (171)
                      ++++++ ++||+||++||++|..|+..+.   +|||+.
T Consensus         1 rsy~~p-diDE~eL~aELdaL~~e~~~~~---~pSyL~   34 (69)
T 3uly_B            1 RSYGTP-ELDEDDLEAELDALGDELLADE---DSSYLD   34 (69)
T ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHHhccc---Ccchhh
Confidence            356776 6999999999999999987543   466663

>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A

Probab=86.42  E-value=0.15  Score=39.39  Aligned_cols=6  Identities=67%  Similarity=0.816  Sum_probs=0.0

Q ss_pred             CCCCCC
Q 030827          150 LPTAPS  155 (171)
Q Consensus       150 lp~~p~  155 (171)
                      ||++|+
T Consensus       173 l~~~P~  178 (179)
T 2gd5_A          173 LGKAPS  178 (179)
T ss_dssp             ------
T ss_pred             cccCCC
Confidence            455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00