Citrus Sinensis ID: 030832

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYIGCSYASECSDGSILCTCYQLYCYDFACCIS
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHccccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccHHHHHHHHccccEHEEccccccccHccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHccHHHHccccccccHHHccccccccccccHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEccHHEcc
Coil and Loop (DISEMBL)
mgkvfasnplslnvpdpafeswlrdsgylEILDtatttsanavttastketttaTTITHSLLHYLYTFISLLtvnpfaklttddfsaktpswTREFIGalgsysfpssphtlklRVHENVKRYARNYASLFILFFACSLYigcsyasecsdgsilctcyqlycydfaccis
Flexible Loop (DISEMBL)
mgkvfasnplslnvpdpAFESWLRDSGYLEILDTatttsanavttastketttaTTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYIGCSYASECSDGSILCTCYQLYCYDFACCIS
Low Complexity Region (SEG)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDtatttsanavttastketttattitHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYIGCSYASECSDGSILCTCYQLYCYDFACCIS
Disordered region (IsUnstruct)
*****************AFESWLRDSGYLEILDTA************************SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYIGCSYASECSDGSILCTCYQLYCYDFACCI*
Disordered Region (DISOPRED)
******SNPLSLNVPDPAFESWLRDSGYLEIL***************************SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSP*T**LRVHENVKRYARNYASLFILFFACSLYIGCSYASECSDGSILCTCYQLYCYDFACCIS
Disordered Region (DISEMBL)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYIGCSYASECSDGSILCTCYQLYCYDFACCIS
Disordered Region (DISPRO)
****FASNPLSLNVPDPAFESWLRDSGYLEILDT*********************TITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYIGCSYASECSDGSILCTCYQLYCYDFACCIS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYIGCSYASECSDGSILCTCYQLYCYDFACCIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q8LFP1	241	PRA1 family protein H OS=	yes	no	0.795	0.564	0.546	2e-36

>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 14/150 (9%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLY 140
             ++RVHEN+KR+ARNYA+LFI+FFAC+LY
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALY 152

May be involved in both secretory and endocytic intracellular trafficking in the endosomal/prevacuolar compartments.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
255584403	235	conserved hypothetical protein [Ricinus	0.801	0.582	0.606	1e-39
449456631	235	PREDICTED: PRA1 family protein H-like is	0.795	0.578	0.577	3e-37
449507067	235	PREDICTED: PRA1 family protein H-like is	0.795	0.578	0.577	4e-37
224128244	232	predicted protein [Populus trichocarpa]	0.801	0.590	0.619	9e-37
225461516	233	PREDICTED: PRA1 family protein H-like [V	0.812	0.596	0.551	4e-35
297799228	241	hypothetical protein ARALYDRAFT_492039 [	0.795	0.564	0.546	4e-35
18417012	241	PRA1-like protein H [Arabidopsis thalian	0.795	0.564	0.546	9e-35
302142972	231	unnamed protein product [Vitis vinifera]	0.789	0.584	0.560	1e-34
4469005	208	hypothetical protein [Arabidopsis thalia	0.795	0.653	0.546	2e-34
147844569	244	hypothetical protein VITISV_019028 [Viti	0.789	0.553	0.560	3e-34

>gi|255584403|ref|XP_002532934.1| conserved hypothetical protein [Ricinus communis] gi|223527298|gb|EEF29450.1| conserved hypothetical protein [Ricinus communis]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/145 (60%), Positives = 105/145 (72%), Gaps = 8/145 (5%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITH---- 59
           VF+SNPLSL+VPDPAFESWLRDSGYLE+LD  ++++A   T  +   + + T        
Sbjct: 2   VFSSNPLSLSVPDPAFESWLRDSGYLELLDHRSSSTAATSTPTTASTSNSTTATAATITG 61

Query: 60  ----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR 115
               SL  +  T ISL T+NP +KLTTDDFS +TPSWTR F G  GSYSFPS+    +LR
Sbjct: 62  GFFISLFSHFITLISLFTLNPLSKLTTDDFSGQTPSWTRVFFGDFGSYSFPSNADQARLR 121

Query: 116 VHENVKRYARNYASLFILFFACSLY 140
           VHENVKRYARNYASLFILFFAC+LY
Sbjct: 122 VHENVKRYARNYASLFILFFACTLY 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456631|ref|XP_004146052.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449456633|ref|XP_004146053.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 97/142 (68%), Gaps = 6/142 (4%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATT------TSANAVTTASTKETTTATTIT 58
           F+SNPLSL+VPD AF+SWLRDSGYLEILD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T+NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFVGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSLY 140
           N KRYARNYASLF+LFF C+LY
Sbjct: 123 NAKRYARNYASLFVLFFVCTLY 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507067|ref|XP_004162924.1| PREDICTED: PRA1 family protein H-like isoform 1 [Cucumis sativus] gi|449507071|ref|XP_004162925.1| PREDICTED: PRA1 family protein H-like isoform 2 [Cucumis sativus]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 82/142 (57%), Positives = 97/142 (68%), Gaps = 6/142 (4%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATT------TSANAVTTASTKETTTATTIT 58
           F+SNPLSL+VPD AF+SWLRDSGYLEILD  T+      ++A       T     AT   
Sbjct: 3   FSSNPLSLSVPDAAFDSWLRDSGYLEILDQRTSDLHRHSSAAPPARPTPTAAAPLATGFF 62

Query: 59  HSLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            SL   + T +S+ T+NPFAKL+  DFS  TPSWT  F+G   SYSFPSSP   +LRVHE
Sbjct: 63  ISLFSRIATLLSIFTLNPFAKLSAADFSGPTPSWTTGFLGFFESYSFPSSPAQARLRVHE 122

Query: 119 NVKRYARNYASLFILFFACSLY 140
           N KRYARNYASLF+LFF C+LY
Sbjct: 123 NAKRYARNYASLFVLFFVCTLY 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128244|ref|XP_002329116.1| predicted protein [Populus trichocarpa] gi|222869785|gb|EEF06916.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 106/142 (74%), Gaps = 5/142 (3%)

Query: 4   VFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITH---- 59
           VF+SNPLSL+VPD  F+SWLRDSGYLEILD  +++SA A    ++  T+T TT T     
Sbjct: 2   VFSSNPLSLSVPDTTFDSWLRDSGYLEILDQHSSSSAAAAPATTSTITSTTTTATATGLF 61

Query: 60  -SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHE 118
            S   ++ T +SL T+NPF+KLTTDDFS +TPSWTR F    GSYSFPS     +LRV+E
Sbjct: 62  ISFFSHILTLLSLFTLNPFSKLTTDDFSGQTPSWTRSFFADCGSYSFPSGSDQARLRVNE 121

Query: 119 NVKRYARNYASLFILFFACSLY 140
           NVKRYARNYASLFILFFAC+LY
Sbjct: 122 NVKRYARNYASLFILFFACTLY 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461516|ref|XP_002285129.1| PREDICTED: PRA1 family protein H-like [Vitis vinifera]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/145 (55%), Positives = 107/145 (73%), Gaps = 6/145 (4%)

Query: 1   MGKVFASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS 60
           M   F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S
Sbjct: 1   MPMAFSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNS 59

Query: 61  -----LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLR 115
                +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LR
Sbjct: 60  FFFVSILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLR 119

Query: 116 VHENVKRYARNYASLFILFFACSLY 140
           VHENVKRYARNYA+LFI+ FAC+LY
Sbjct: 120 VHENVKRYARNYATLFIICFACTLY 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799228|ref|XP_002867498.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata] gi|297313334|gb|EFH43757.1| hypothetical protein ARALYDRAFT_492039 [Arabidopsis lyrata subsp. lyrata]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 14/150 (9%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  TP WT  F G   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTPPWTTGFFGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLY 140
             ++RVHEN+KR+ARNYA+LFI+FFAC+LY
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALY 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417012|ref|NP_567776.1| PRA1-like protein H [Arabidopsis thaliana] gi|75155917|sp|Q8LFP1.1|PRA1H_ARATH RecName: Full=PRA1 family protein H; Short=AtPRA1.H gi|21536961|gb|AAM61302.1| unknown [Arabidopsis thaliana] gi|92856594|gb|ABE77405.1| At4g27540 [Arabidopsis thaliana] gi|332659955|gb|AEE85355.1| PRA1-like protein H [Arabidopsis thaliana]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 14/150 (9%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLY 140
             ++RVHEN+KR+ARNYA+LFI+FFAC+LY
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALY 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142972|emb|CBI20267.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 106/141 (75%), Gaps = 6/141 (4%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS---- 60
           F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S    
Sbjct: 3   FSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNSFFFV 61

Query: 61  -LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHEN 119
            +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY+FPSS    +LRVHEN
Sbjct: 62  SILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYTFPSSSSQARLRVHEN 121

Query: 120 VKRYARNYASLFILFFACSLY 140
           VKRYARNYA+LFI+ FAC+LY
Sbjct: 122 VKRYARNYATLFIICFACTLY 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4469005|emb|CAB38266.1| hypothetical protein [Arabidopsis thaliana] gi|7269608|emb|CAB81404.1| hypothetical protein [Arabidopsis thaliana]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 14/150 (9%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETT----------TA 54
           F+ NPLSL+VPDPAFESWLRDSGYLE+LD  T+ +A A +++++  ++            
Sbjct: 3   FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query: 55  TTITH----SLLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
           ++IT     SLL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct: 63  SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query: 111 TLKLRVHENVKRYARNYASLFILFFACSLY 140
             ++RVHEN+KR+ARNYA+LFI+FFAC+LY
Sbjct: 123 QARMRVHENIKRFARNYATLFIVFFACALY 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844569|emb|CAN80067.1| hypothetical protein VITISV_019028 [Vitis vinifera]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 104/141 (73%), Gaps = 6/141 (4%)

Query: 5   FASNPLSLNVPDPAFESWLRDSGYLEILDTATTTSANAVTTASTKETTTATTITHS---- 60
           F+SNPLSL+VPD AFE+WLRD+GYLE++D   T+  + +++     +TTA+  ++S    
Sbjct: 3   FSSNPLSLSVPDAAFETWLRDTGYLEVVDR-RTSDLHRLSSGGDSSSTTASIPSNSFFFV 61

Query: 61  -LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPHTLKLRVHEN 119
            +L +L T +SL T+NPF+KLT+DDFS  TPSWT  F+G   SY FPSS    +LRVHEN
Sbjct: 62  SILSHLGTLLSLFTLNPFSKLTSDDFSGPTPSWTLAFVGFCDSYXFPSSSSQARLRVHEN 121

Query: 120 VKRYARNYASLFILFFACSLY 140
           VKRYARNYA+LFI+ FAC LY
Sbjct: 122 VKRYARNYATLFIICFACXLY 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2137692	241	PRA1.H "AT4G27540" [Arabidopsi	0.795	0.564	0.513	2.8e-34

TAIR|locus:2137692 PRA1.H "AT4G27540" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 77/150 (51%), Positives = 90/150 (60%)

Query:     5 FASNPLSLNVPDPAFESWLRDSGYLEILDXXXXXXXXXXXXXXXXXXXXXXXXXHS---- 60
             F+ NPLSL+VPDPAFESWLRDSGYLE+LD                          S    
Sbjct:     3 FSPNPLSLSVPDPAFESWLRDSGYLELLDHRTSAAAAAASSSASVSSSAAATSAASDDVV 62

Query:    61 ----------LLHYLYTFISLLTVNPFAKLTTDDFSAKTPSWTREFIGALGSYSFPSSPH 110
                       LL  L T  SLLT+NPF+KL+ DDFS  T  WT  FIG   SYSFPSS  
Sbjct:    63 SSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSGDTTPWTTGFIGNCDSYSFPSSSQ 122

Query:   111 TLKLRVHENVKRYARNYASLFILFFACSLY 140
               ++RVHEN+KR+ARNYA+LFI+FFAC+LY
Sbjct:   123 QARMRVHENIKRFARNYATLFIVFFACALY 152


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       146   0.00079  103 3  11 22  0.39    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.45u 0.09s 13.54t   Elapsed:  00:00:00
  Total cpu time:  13.45u 0.09s 13.54t   Elapsed:  00:00:00
  Start:  Thu May  9 23:34:01 2013   End:  Thu May  9 23:34:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PF03208	153	PRA1: PRA1 family protein; InterPro: IPR004895 Thi	99.14
KOG3142	187	consensus Prenylated rab acceptor 1 [Intracellular	97.17
COG5130	169	YIP3 Prenylated rab acceptor 1 and related protein	88.23

>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1

Probab=99.14  E-value=4.3e-11  Score=90.78  Aligned_cols=54  Identities=31%  Similarity=0.559  Sum_probs=50.1

Q ss_pred             CCCCCCccceeeccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHhh
Q 030832           86 SAKTPSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFILFFACSLYI  141 (171)
Q Consensus        86 ~~~tpsWtreF~g~~~SYSfPss~~QarlRV~ENvkRYarNYa~L~ilfFAc~LY~  141 (171)
                      ..+..|| +||+ +.++|++|++..|++.|+.+|+.+|..||+.+++++++++|+.
T Consensus         5 ~~~~Rpw-~eF~-~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~   58 (153)
T PF03208_consen    5 LSPLRPW-REFF-DTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLT   58 (153)
T ss_pred             cCCCCCH-HHHh-CccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577899 9999 8899999999999999999999999999999999999988876

>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.00041  Score=57.91  Aligned_cols=50  Identities=26%  Similarity=0.487  Sum_probs=42.8

Q ss_pred             CCccceeeccCccccCCCChhhhhhhhhhhHHHHhhhhHHHH-HHHHHHHHhh
Q 030832           90 PSWTREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLF-ILFFACSLYI  141 (171)
Q Consensus        90 psWtreF~g~~~SYSfPss~~QarlRV~ENvkRYarNYa~L~-ilfFAc~LY~  141 (171)
                      .|| +||+- ..+-|.|++..+|..||--|+.+|--||+.++ +++|.+.+|+
T Consensus        38 RpW-~ef~d-~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~   88 (187)
T KOG3142|consen   38 RPW-SEFFD-RSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITH   88 (187)
T ss_pred             CCH-HHHHc-ccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            349 99984 46789999999999999999999999999876 4567777887

>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]

Probab=88.23  E-value=0.63  Score=38.95  Aligned_cols=48  Identities=31%  Similarity=0.526  Sum_probs=36.9

Q ss_pred             cceeeccCccccCCCChhhhhhhhhhhHHHHhhhhHHHHHH-HHHHHHhh
Q 030832           93 TREFIGALGSYSFPSSPHTLKLRVHENVKRYARNYASLFIL-FFACSLYI  141 (171)
Q Consensus        93 treF~g~~~SYSfPss~~QarlRV~ENvkRYarNYa~L~il-fFAc~LY~  141 (171)
                      +||||-. +--|-|....+|+.||--|.+|+--||.++..+ .---.||+
T Consensus        32 ~~eFfni-~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~n   80 (169)
T COG5130          32 TREFFNI-GRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYN   80 (169)
T ss_pred             HHHHhcc-ccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence            5899964 346889999999999999999999999876533 23334454

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
2eap_A	90	Lymphocyte cytosolic protein 2; cell-free protein	80.41

>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.41  E-value=0.84  Score=33.89  Aligned_cols=32  Identities=16%  Similarity=0.312  Sum_probs=22.7

Q ss_pred             CCcccCCCccccc---CchHHHHHhhhcCc--hhhhh
Q 030832            2 GKVFASNPLSLNV---PDPAFESWLRDSGY--LEILD   33 (171)
Q Consensus         2 gm~Fs~NPLSLSv---Pd~afe~WLRDsGy--LEilD   33 (171)
                      ||+|..=|.-..|   -..++..|||+.||  .|.+-
T Consensus         7 ~m~~~~~ps~seV~~Wsp~~VadWLkk~g~~~cd~lv   43 (90)
T 2eap_A            7 GMALRNVPFRSEVLGWDPDSLADYFKKLNYKDCEKAV   43 (90)
T ss_dssp             CSSTTCCCCHHHHTTCCTTTHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccCccccccCHHHHHHHHHHcCCchHHHHH
Confidence            7887765554443   35789999999999  55553

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00