Citrus Sinensis ID: 030840

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MGLIDKLTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Secondary Structure (PSIPRED)
cccHHHcccccccccEEEEcEEEEcHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEccccHEHEEEccEEEEcHHHHHHHHHHcccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mglidkltlgYCVCWFITLQVKVSNSALISAFMTelepdtpvtqrdydrlqlssspflERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKArkaageeplpeedpsnpifkpipepprlesFLIANRIANYCnqingvtgqSFSRLYLTKALHDN
Flexible Loop (DISEMBL)
MGLIDKLTLGYCVCWFITLQVKVSNSALISAFMTelepdtpvtqrDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKArkaageeplpeedpsnpiFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Low Complexity Region (SEG)
MGLIDKLTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Disordered region (IsUnstruct)
**LIDKLTLGYCVCWFITLQVKVSNSALISAFMTELE*********Y**L*****PFLERNMEFLIECMDDLSVEQQKFQFYYRSL***********************************************LESFLIANRIANYCNQINGVTGQSFSRLYLTK*****
Disordered Region (DISOPRED)
***I**LTLGYCVCWFITLQVKVSNSALISAFMTELEP*************LSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRS**********************************PSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKA****
Disordered Region (DISEMBL)
MGLIDKLTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSL*********************************PSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Disordered Region (DISPRO)
*GLIDKLTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLIDKLTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q9C5Z2	337	Eukaryotic translation in	yes	no	0.911	0.459	0.787	4e-66
A7SA47	332	Eukaryotic translation in	N/A	no	0.852	0.436	0.387	4e-27
B5RI54	344	Eukaryotic translation in	N/A	no	0.9	0.444	0.387	3e-22
Q9GV27	337	Eukaryotic translation in	N/A	no	0.941	0.474	0.380	5e-22
Q5PPY6	334	Eukaryotic translation in	N/A	no	0.864	0.440	0.375	2e-20
Q6P381	335	Eukaryotic translation in	yes	no	0.864	0.438	0.375	5e-20
Q7PVR3	334	Eukaryotic translation in	yes	no	0.941	0.479	0.337	6e-20
Q6AXJ2	335	Eukaryotic translation in	yes	no	0.858	0.435	0.391	3e-19
B5FY35	348	Eukaryotic translation in	yes	no	0.894	0.436	0.376	4e-19
A1D379	347	Eukaryotic translation in	N/A	no	0.882	0.432	0.329	4e-19

>sp|Q9C5Z2|EIF3H_ARATH Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2

 Score =  250 bits (638), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/155 (78%), Positives = 140/155 (90%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSAL+SAFMTELE DTPV+Q DYDRL  S++PFLE NMEFLI+CMDDLS+E
Sbjct: 183 FEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLHSSTTPFLENNMEFLIKCMDDLSME 242

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AGEEPLPEEDPSNPIFK IPEP RLE
Sbjct: 243 QQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAGEEPLPEEDPSNPIFKAIPEPSRLE 302

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           SFLI N+++N+C QINGV GQ+FSRLYLTKALHDN
Sbjct: 303 SFLITNQVSNFCGQINGVAGQNFSRLYLTKALHDN 337

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Arabidopsis thaliana (taxid: 3702)

>sp|A7SA47|EIF3H_NEMVE Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis GN=v1g168210 PE=3 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 98/147 (66%), Gaps = 2/147 (1%)

Query: 23  VSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFY 82
           + NS+L++  + EL+ +TP    D   L LS+  +LE+N+  L+E +D+L  +  K+  Y
Sbjct: 185 IKNSSLMNVLLCELDENTPTPSAD-QFLTLSTGSYLEKNVRVLMESVDELCQDSNKYHNY 243

Query: 83  YRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANR 142
            RS+ RQQ Q++++LQ+R+ EN++R   GE+PLP+ED S  +FKP+P P RL++ L++ +
Sbjct: 244 QRSVIRQQQQKENYLQRRQQENQSRIQRGEDPLPDEDLSK-MFKPLPVPSRLDNLLLSEQ 302

Query: 143 IANYCNQINGVTGQSFSRLYLTKALHD 169
           +  YC  ++  + QSF + +L +AL D
Sbjct: 303 VNTYCQHVHQFSTQSFGKFFLAQALQD 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Nematostella vectensis (taxid: 45351)

>sp|B5RI54|EIF3H_SALSA Eukaryotic translation initiation factor 3 subunit H OS=Salmo salar GN=eif3h PE=2 SV=1

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 97/155 (62%), Gaps = 2/155 (1%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + + + NS LI+  M ELE    V  + ++ L LSSS  LE++++ L++ +DD+S +
Sbjct: 190 FEEVPIVIKNSHLINVLMWELEEKCTVADK-HELLNLSSSNHLEKSLQLLMDRVDDMSQD 248

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
             K+  Y R+L++QQ Q+  + Q+R+ EN  R+  GE PLPEED S  +FKP   PPR++
Sbjct: 249 IVKYNTYSRNLSKQQQQKHQYTQRRQQENAQRQTRGETPLPEEDVSK-MFKPPQPPPRMD 307

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           + LIA +I NYC  +   T Q+  +L++ +AL  +
Sbjct: 308 TLLIAGQINNYCQNVKEFTSQNLGKLFMAEALQGH 342

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Salmo salar (taxid: 8030)

>sp|Q9GV27|EIF3H_BOMMO Eukaryotic translation initiation factor 3 subunit H OS=Bombyx mori PE=2 SV=1

 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 90/163 (55%), Gaps = 3/163 (1%)

Query: 7   LTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLI 66
           L +GY    FI + + + NS L +  ++EL    P  +     L L ++  LE  +  L+
Sbjct: 170 LKIGY-ENLFIEVPIVIRNSPLTNIMISELTEMIP-EEEGSKFLDLGTASVLEGQLRSLM 227

Query: 67  ECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFK 126
           E +D+L+ E  KF  Y + + RQQ  +  W+ KR  EN AR A  E PLPEED  N +FK
Sbjct: 228 ERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEED-VNKLFK 286

Query: 127 PIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
           P P PPRL   ++A +I  Y   I+    QS ++LYLT+AL +
Sbjct: 287 PHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLYLTQALQN 329

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Bombyx mori (taxid: 7091)

>sp|Q5PPY6|EIF3H_XENLA Eukaryotic translation initiation factor 3 subunit H OS=Xenopus laevis GN=eif3h PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 94/149 (63%), Gaps = 2/149 (1%)

Query: 21  VKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQ 80
           + + NS LI+  + EL+   PVT++ ++ L LSSS  LE++++ L++ +D++S +  K+ 
Sbjct: 185 IVIKNSHLINVLVWELDKKAPVTEK-HELLNLSSSNHLEKSLQLLMDRVDEMSQDIVKYN 243

Query: 81  FYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIA 140
            Y R++ +QQ Q+  + Q+++ EN  R + GE PLPEED  N +FKP   P R++  LIA
Sbjct: 244 TYQRNVGKQQQQKHQYTQRKQQENLQRLSRGETPLPEED-VNKMFKPPVTPSRMDPLLIA 302

Query: 141 NRIANYCNQINGVTGQSFSRLYLTKALHD 169
            +I  Y   I G T Q+  +L++ +AL D
Sbjct: 303 GQINTYIQHIKGFTSQNLGKLFMAEALQD 331

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus laevis (taxid: 8355)

>sp|Q6P381|EIF3H_XENTR Eukaryotic translation initiation factor 3 subunit H OS=Xenopus tropicalis GN=eif3h PE=2 SV=1

 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 94/149 (63%), Gaps = 2/149 (1%)

Query: 21  VKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQ 80
           + + NS LI+    EL+   PVT++ ++ L LSSS  LE++++ L++ +D+LS +  K+ 
Sbjct: 186 IIIKNSHLINVLAWELDKKAPVTEK-HELLNLSSSNHLEKSLQLLMDRVDELSQDIVKYN 244

Query: 81  FYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIA 140
            Y R++++QQ Q+  + Q+R+ EN  R++ GE  LPEED  N +FKP   P R++S LIA
Sbjct: 245 TYLRNISKQQQQKHQYTQRRQQENLQRQSRGETSLPEED-VNKLFKPPVPPSRMDSLLIA 303

Query: 141 NRIANYCNQINGVTGQSFSRLYLTKALHD 169
            +I  Y   I   T Q+  +L++ +A+ D
Sbjct: 304 GQINTYIQHIKEFTSQNLGKLFMAEAMQD 332

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Xenopus tropicalis (taxid: 8364)

>sp|Q7PVR3|EIF3H_ANOGA Eukaryotic translation initiation factor 3 subunit H OS=Anopheles gambiae GN=AGAP009204 PE=3 SV=3

 Score = 97.1 bits (240), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 7   LTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLI 66
           L +GY    FI + + + NSAL +  M+EL    P  +     L L ++  LE ++  ++
Sbjct: 169 LKVGY-ENLFIEIPIVIKNSALCNIMMSELTELVP-EEEGTHFLDLGTASVLENHLRCMM 226

Query: 67  ECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFK 126
           + +D+L+ E  KF  Y ++  RQ+ ++   L K   EN AR A GE+ +PEE+  N +F+
Sbjct: 227 DRVDELNHEATKFNKYQQAAIRQEQEKHRMLAKHAQENAARIAKGEQAVPEEE-VNKLFR 285

Query: 127 PIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
           PIP P RL   +++ +I  Y   I+    QS ++LY+T+AL +
Sbjct: 286 PIPVPTRLNPMIVSGQINTYAQHISQFCSQSLAKLYMTQALQN 328

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Anopheles gambiae (taxid: 7165)

>sp|Q6AXJ2|EI3HA_DANRE Eukaryotic translation initiation factor 3 subunit H-A OS=Danio rerio GN=eif3ha PE=2 SV=1

 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 96/148 (64%), Gaps = 2/148 (1%)

Query: 23  VSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFY 82
           + NS LI+  M +L+  + +  + ++ L LSSS  LE++++ L++ +DD+S +  K+  Y
Sbjct: 188 IKNSHLINVLMWDLQEKSTLADK-HELLNLSSSNHLEKSLQLLMDRVDDMSQDIVKYNTY 246

Query: 83  YRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANR 142
            R+L++QQ Q+Q + Q+R+ EN  R++ GE PLPEED S  +FK    PPR+++ LIA +
Sbjct: 247 CRNLSKQQQQKQQYQQRRQQENAQRQSRGEPPLPEEDISK-MFKAPQAPPRMDTLLIAGQ 305

Query: 143 IANYCNQINGVTGQSFSRLYLTKALHDN 170
           I NYC  I   T Q+  +L++ +AL  N
Sbjct: 306 INNYCQNIKEFTSQNLGKLFMAEALQSN 333

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Danio rerio (taxid: 7955)

>sp|B5FY35|EIF3H_TAEGU Eukaryotic translation initiation factor 3 subunit H OS=Taeniopygia guttata GN=EIF3H PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 96/154 (62%), Gaps = 2/154 (1%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + + + NS LI+  + ELE  + V  R ++ L L+SS  L ++++ L++ +D++S +
Sbjct: 194 FEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLSLASSNHLGKSLQLLMDRVDEMSQD 252

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
             K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE PLPEED  N +FKP   PPR+E
Sbjct: 253 IVKYNTYLRNVSKQQQQKHQYQQRRQQENIQRQSRGEPPLPEED-INKLFKPPQPPPRME 311

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
           S LIA +I  YC  I     Q+  +L++ +AL D
Sbjct: 312 SLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Taeniopygia guttata (taxid: 59729)

>sp|A1D379|EIF3H_NEOFI Eukaryotic translation initiation factor 3 subunit H OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_015650 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 23/173 (13%)

Query: 16  FITLQVKVSNSALISAFMTELE-PDTP---------------------VTQRDYDRLQLS 53
           F+ L V++ NS LI++F+ +L+ P+ P                     +   +YD L LS
Sbjct: 167 FVELPVEIHNSHLITSFIHQLQTPNIPAPTDLPPSLAALESGPFVKSSILAPNYDNLTLS 226

Query: 54  SSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEE 113
             PFLE+N + L++ ++    E   FQ+Y RSL R+Q +  +W QKR+ EN A +AA ++
Sbjct: 227 IDPFLEKNCDLLLDSIETHHTETNNFQYYQRSLAREQQRISAWQQKRKQEN-ATRAALKQ 285

Query: 114 PLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKA 166
           PL  ED    +FK   EP RLES L + ++  Y  QI+     +  +++  K 
Sbjct: 286 PLLPEDEWQRLFKLPQEPSRLESMLNSRQVDQYARQIDSFVSSTTGKMFAVKG 338

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
449468786	337	PREDICTED: eukaryotic translation initia	0.911	0.459	0.832	9e-68
356568923	337	PREDICTED: eukaryotic translation initia	0.911	0.459	0.832	5e-67
359806280	339	uncharacterized protein LOC100795273 [Gl	0.911	0.457	0.832	5e-67
118481029	341	unknown [Populus trichocarpa]	0.911	0.454	0.832	5e-67
224128852	333	predicted protein [Populus trichocarpa]	0.911	0.465	0.832	6e-67
225433688	337	PREDICTED: eukaryotic translation initia	0.911	0.459	0.806	1e-66
388498918	337	unknown [Lotus japonicus]	0.911	0.459	0.819	7e-66
357502831	339	Eukaryotic translation initiation factor	0.905	0.454	0.805	4e-65
224065052	340	predicted protein [Populus trichocarpa]	0.911	0.455	0.812	9e-65
18391211	337	translation initiation factor eIF-3 subu	0.911	0.459	0.787	2e-64

>gi|449468786|ref|XP_004152102.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Cucumis sativus] gi|449521699|ref|XP_004167867.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Cucumis sativus]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 129/155 (83%), Positives = 143/155 (92%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSALISAFMTELE D+PVTQ DYDRLQLS++PF+ERN+EFLIECMDDLSVE
Sbjct: 183 FEEIPIKVSNSALISAFMTELESDSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVE 242

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQFYYRSLTRQQAQQQSWLQKRR EN  RKAAGEEPLPEEDP+NPIFKP+PEP RL+
Sbjct: 243 QQKFQFYYRSLTRQQAQQQSWLQKRRAENMTRKAAGEEPLPEEDPTNPIFKPLPEPSRLD 302

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           S+LI N+IANYCNQINGV GQSF+RL+L KALHDN
Sbjct: 303 SYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568923|ref|XP_003552657.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Glycine max]

 Score =  258 bits (660), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 129/155 (83%), Positives = 143/155 (92%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSALISAFMTELEPDTPVTQ DYDRLQLS+S  +ERN EFLIECMDDLS+E
Sbjct: 183 FEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLE 242

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQFYYRSL+RQQAQQQ+WLQKRR EN ARKAAGEEPLPEEDPSNPIFKP+PEP RLE
Sbjct: 243 QQKFQFYYRSLSRQQAQQQAWLQKRRTENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLE 302

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           SFLI N+I+NYCNQINGV+GQSF+RLYL KALH++
Sbjct: 303 SFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806280|ref|NP_001240962.1| uncharacterized protein LOC100795273 [Glycine max] gi|255647702|gb|ACU24312.1| unknown [Glycine max]

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 129/155 (83%), Positives = 143/155 (92%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSALISAFMTELEPDTPVTQ DYDRLQLS+S  +ERN EFLIECMDDLS+E
Sbjct: 185 FEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLE 244

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQFYYRSL+RQQAQQQ+WLQKRR EN ARKAAGEEPLPEEDPSNPIFKP+PEP RLE
Sbjct: 245 QQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLE 304

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           SFLI N+I+NYCNQINGV+GQSF+RLYL KALH++
Sbjct: 305 SFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481029|gb|ABK92468.1| unknown [Populus trichocarpa]

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 129/155 (83%), Positives = 144/155 (92%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSALISAFMTELE DTPVTQ DYDRLQLS+SP+LERN+EFLIECMDDLS+E
Sbjct: 187 FEEIPIKVSNSALISAFMTELEDDTPVTQCDYDRLQLSTSPYLERNVEFLIECMDDLSME 246

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQ+YYR+L+RQQAQQQ+WLQKRR EN +RKAAGEEPLPEEDP NPIFKPIPEP RL+
Sbjct: 247 QQKFQYYYRNLSRQQAQQQAWLQKRRSENMSRKAAGEEPLPEEDPLNPIFKPIPEPSRLD 306

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           SFLI N+IANYCNQINGV+GQSFSRLYL KALH+N
Sbjct: 307 SFLITNQIANYCNQINGVSGQSFSRLYLMKALHEN 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128852|ref|XP_002320437.1| predicted protein [Populus trichocarpa] gi|222861210|gb|EEE98752.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (659), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 129/155 (83%), Positives = 144/155 (92%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSALISAFMTELE DTPVTQ DYDRLQLS+SP+LERN+EFLIECMDDLS+E
Sbjct: 179 FEEIPIKVSNSALISAFMTELEDDTPVTQCDYDRLQLSTSPYLERNVEFLIECMDDLSME 238

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQ+YYR+L+RQQAQQQ+WLQKRR EN +RKAAGEEPLPEEDP NPIFKPIPEP RL+
Sbjct: 239 QQKFQYYYRNLSRQQAQQQAWLQKRRSENMSRKAAGEEPLPEEDPLNPIFKPIPEPSRLD 298

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           SFLI N+IANYCNQINGV+GQSFSRLYL KALH+N
Sbjct: 299 SFLITNQIANYCNQINGVSGQSFSRLYLMKALHEN 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433688|ref|XP_002266909.1| PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera] gi|296089621|emb|CBI39440.3| unnamed protein product [Vitis vinifera]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/155 (80%), Positives = 142/155 (91%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSALISAFMTELE DTPVTQ DYDRLQLS++P++ERN+EFLIECMDDLS+E
Sbjct: 183 FEEIPIKVSNSALISAFMTELEADTPVTQCDYDRLQLSTNPYMERNLEFLIECMDDLSME 242

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQFYYR+L+RQQ QQQ+WLQKRR EN ARK AGE+PLPEEDP+NPIFKPIPEP RL+
Sbjct: 243 QQKFQFYYRNLSRQQGQQQAWLQKRRAENMARKTAGEDPLPEEDPANPIFKPIPEPSRLD 302

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           SFLI N+I+NYCNQINGV GQSFSRLYL KALH+N
Sbjct: 303 SFLITNQISNYCNQINGVAGQSFSRLYLMKALHEN 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498918|gb|AFK37525.1| unknown [Lotus japonicus]

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 127/155 (81%), Positives = 142/155 (91%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSALISAFMTELEPDTPVTQ DYDRLQLS+S  LERN E+LIECMDDLS+E
Sbjct: 183 FEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLLERNTEYLIECMDDLSLE 242

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQ +YRSL+RQQAQQQ+WLQKRR EN ARKAAGEEPLPEEDPSNPIFKP+PEP RLE
Sbjct: 243 QQKFQLHYRSLSRQQAQQQAWLQKRRTENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLE 302

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           SFLI N+I+NYCNQINGV+GQSF+RLYL KALH++
Sbjct: 303 SFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 337

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502831|ref|XP_003621704.1| Eukaryotic translation initiation factor 3 subunit [Medicago truncatula] gi|124360846|gb|ABN08818.1| Mov34-1 [Medicago truncatula] gi|355496719|gb|AES77922.1| Eukaryotic translation initiation factor 3 subunit [Medicago truncatula]

 Score =  252 bits (643), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 124/154 (80%), Positives = 141/154 (91%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSALISAFMTELEPDTPVTQ D+DRLQLS+S  +ERNMEFLIECMDDLS+E
Sbjct: 184 FEEIPIKVSNSALISAFMTELEPDTPVTQCDFDRLQLSTSSLMERNMEFLIECMDDLSIE 243

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQF+YRSL+RQQAQQQ+WLQKRR +N AR+AAGEEPLPEEDP+NPIFKP+ EP RLE
Sbjct: 244 QQKFQFHYRSLSRQQAQQQAWLQKRRADNMARRAAGEEPLPEEDPANPIFKPLAEPSRLE 303

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
           SFLI N+I+NYCNQINGV GQSF+RLYL KALH+
Sbjct: 304 SFLITNQISNYCNQINGVAGQSFNRLYLLKALHE 337

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065052|ref|XP_002301647.1| predicted protein [Populus trichocarpa] gi|222843373|gb|EEE80920.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (640), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 126/155 (81%), Positives = 140/155 (90%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSALISAFMT LE DTPVTQ DYDRLQLS+SP+LE N+EFLIECMDDLSVE
Sbjct: 186 FEEIPIKVSNSALISAFMTGLEADTPVTQCDYDRLQLSTSPYLESNVEFLIECMDDLSVE 245

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQ++YR+L+RQQAQQQ+WLQKRR EN  RKAAGEEPLPEEDPSNPIFKPIPEP RL 
Sbjct: 246 QQKFQYHYRNLSRQQAQQQAWLQKRRSENMTRKAAGEEPLPEEDPSNPIFKPIPEPSRLG 305

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           SFLI N++ANYCNQINGV+GQSFSRLYL KALH +
Sbjct: 306 SFLITNQMANYCNQINGVSGQSFSRLYLMKALHKD 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391211|ref|NP_563880.1| translation initiation factor eIF-3 subunit 3 [Arabidopsis thaliana] gi|23396619|sp|Q9C5Z2.2|EIF3H_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit H; Short=eIF3h; AltName: Full=Eukaryotic translation initiation factor 3 subunit 3; AltName: Full=eIF-3-gamma; AltName: Full=eIF3 p38 subunit gi|4874264|gb|AAD31329.1|AC007354_2 Similar to gb|U54559 eIF3-p40 subunit from Homo sapiens and is a member of the PF|01398 Mov34 family. ESTs gb|N96623 and gb|N07519 come from this gene [Arabidopsis thaliana] gi|15451122|gb|AAK96832.1| Unknown protein [Arabidopsis thaliana] gi|20148435|gb|AAM10108.1| unknown protein [Arabidopsis thaliana] gi|21592938|gb|AAM64888.1| putative translation initiation factor [Arabidopsis thaliana] gi|23397245|gb|AAN31904.1| putative translation initiation factor [Arabidopsis thaliana] gi|332190533|gb|AEE28654.1| translation initiation factor eIF-3 subunit 3 [Arabidopsis thaliana]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/155 (78%), Positives = 140/155 (90%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + +KVSNSAL+SAFMTELE DTPV+Q DYDRL  S++PFLE NMEFLI+CMDDLS+E
Sbjct: 183 FEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLHSSTTPFLENNMEFLIKCMDDLSME 242

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
           QQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AGEEPLPEEDPSNPIFK IPEP RLE
Sbjct: 243 QQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAGEEPLPEEDPSNPIFKAIPEPSRLE 302

Query: 136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
           SFLI N+++N+C QINGV GQ+FSRLYLTKALHDN
Sbjct: 303 SFLITNQVSNFCGQINGVAGQNFSRLYLTKALHDN 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2196469	337	TIF3H1 "AT1G10840" [Arabidopsi	0.911	0.459	0.787	2.3e-64
UNIPROTKB|B5RI54	344	eif3h "Eukaryotic translation	0.882	0.436	0.394	3.2e-26
ZFIN|ZDB-GENE-051030-42	333	eif3hb "eukaryotic translation	0.947	0.483	0.371	6.6e-26
ZFIN|ZDB-GENE-040808-19	335	eif3ha "eukaryotic translation	0.9	0.456	0.380	1.1e-25
UNIPROTKB|B5FY35	348	EIF3H "Eukaryotic translation	0.894	0.436	0.376	5.9e-25
UNIPROTKB|Q5ZLE6	348	EIF3H "Eukaryotic translation	0.888	0.433	0.380	1.2e-24
UNIPROTKB|B3KS98	366	EIF3S3 "Eukaryotic translation	0.888	0.412	0.380	1.2e-24
UNIPROTKB|O15372	352	EIF3H "Eukaryotic translation	0.888	0.428	0.380	1.2e-24
UNIPROTKB|Q5PPY6	334	eif3h "Eukaryotic translation	0.894	0.455	0.370	2e-24
UNIPROTKB|F1S1J9	327	EIF3H "Uncharacterized protein	0.894	0.464	0.370	3.3e-24

TAIR|locus:2196469 TIF3H1 "AT1G10840" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 122/155 (78%), Positives = 140/155 (90%)

Query:    16 FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
             F  + +KVSNSAL+SAFMTELE DTPV+Q DYDRL  S++PFLE NMEFLI+CMDDLS+E
Sbjct:   183 FEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLHSSTTPFLENNMEFLIKCMDDLSME 242

Query:    76 QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
             QQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AGEEPLPEEDPSNPIFK IPEP RLE
Sbjct:   243 QQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAGEEPLPEEDPSNPIFKAIPEPSRLE 302

Query:   136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
             SFLI N+++N+C QINGV GQ+FSRLYLTKALHDN
Sbjct:   303 SFLITNQVSNFCGQINGVAGQNFSRLYLTKALHDN 337

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

UNIPROTKB|B5RI54 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Salmo salar (taxid:8030)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 60/152 (39%), Positives = 96/152 (63%)

Query:    16 FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
             F  + + + NS LI+  M ELE    V  + ++ L LSSS  LE++++ L++ +DD+S +
Sbjct:   190 FEEVPIVIKNSHLINVLMWELEEKCTVADK-HELLNLSSSNHLEKSLQLLMDRVDDMSQD 248

Query:    76 QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
               K+  Y R+L++QQ Q+  + Q+R+ EN  R+  GE PLPEED S  +FKP   PPR++
Sbjct:   249 IVKYNTYSRNLSKQQQQKHQYTQRRQQENAQRQTRGETPLPEEDVSK-MFKPPQPPPRMD 307

Query:   136 SFLIANRIANYCNQINGVTGQSFSRLYLTKAL 167
             + LIA +I NYC  +   T Q+  +L++ +AL
Sbjct:   308 TLLIAGQINNYCQNVKEFTSQNLGKLFMAEAL 339

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

ZFIN|ZDB-GENE-051030-42 eif3hb "eukaryotic translation initiation factor 3, subunit H, b" [Danio rerio (taxid:7955)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 61/164 (37%), Positives = 104/164 (63%)

Query:     4 IDKLTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNME 63
             + K ++GY    F  + + + NS LI+  + ELE  +    + ++ L LSSS  LE++++
Sbjct:   168 LKKASVGY-EHMFEEVPIVIKNSHLINVLLWELEEKSTAADK-HELLSLSSSSHLEKSLQ 225

Query:    64 FLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNP 123
              L++ +DD+S +  K+  Y RSL++QQ Q+  ++Q+R+ EN  R++ GE PLPEED +  
Sbjct:   226 MLMDRVDDMSQDIVKYNNYSRSLSKQQQQKHQYVQRRQQENAQRQSRGEPPLPEEDLTK- 284

Query:   124 IFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSRLYLTKAL 167
             +FKP   PPR+++ LIA++I  YC  I   T Q+  +L++ +AL
Sbjct:   285 MFKPPQPPPRMDTLLIASQINTYCQTIKEFTSQNLGKLFMAEAL 328

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

ZFIN|ZDB-GENE-040808-19 eif3ha "eukaryotic translation initiation factor 3, subunit H, a" [Danio rerio (taxid:7955)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 59/155 (38%), Positives = 99/155 (63%)

Query:    16 FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
             F  + + + NS LI+  M +L+  + +  + ++ L LSSS  LE++++ L++ +DD+S +
Sbjct:   181 FEEVPIFIKNSHLINVLMWDLQEKSTLADK-HELLNLSSSNHLEKSLQLLMDRVDDMSQD 239

Query:    76 QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
               K+  Y R+L++QQ Q+Q + Q+R+ EN  R++ GE PLPEED S  +FK    PPR++
Sbjct:   240 IVKYNTYCRNLSKQQQQKQQYQQRRQQENAQRQSRGEPPLPEEDISK-MFKAPQAPPRMD 298

Query:   136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHDN 170
             + LIA +I NYC  I   T Q+  +L++ +AL  N
Sbjct:   299 TLLIAGQINNYCQNIKEFTSQNLGKLFMAEALQSN 333

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0048882 "lateral line development" evidence=IMP

GO:0001944 "vasculature development" evidence=IMP

UNIPROTKB|B5FY35 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Taeniopygia guttata (taxid:59729)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 58/154 (37%), Positives = 96/154 (62%)

Query:    16 FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
             F  + + + NS LI+  + ELE  + V  R ++ L L+SS  L ++++ L++ +D++S +
Sbjct:   194 FEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLSLASSNHLGKSLQLLMDRVDEMSQD 252

Query:    76 QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
               K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE PLPEED  N +FKP   PPR+E
Sbjct:   253 IVKYNTYLRNVSKQQQQKHQYQQRRQQENIQRQSRGEPPLPEED-INKLFKPPQPPPRME 311

Query:   136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
             S LIA +I  YC  I     Q+  +L++ +AL D
Sbjct:   312 SLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q5ZLE6 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 59/155 (38%), Positives = 98/155 (63%)

Query:    16 FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
             F  + + + NS LI+  + ELE  + V  R ++ L L+SS  L ++++ L++ +D++S +
Sbjct:   194 FEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLSLASSNHLGKSLQLLMDRVDEMSQD 252

Query:    76 QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPP-RL 134
               K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE PLPEED  N +FKP P+PP R+
Sbjct:   253 IVKYNTYLRNVSKQQQQKHQYQQRRQQENLQRQSRGEAPLPEED-INKLFKP-PQPPARM 310

Query:   135 ESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
             ES LIA +I  YC  I     Q+  +L++ +AL D
Sbjct:   311 ESLLIAGQINTYCQNIKEFNAQNLGKLFMAQALQD 345

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

UNIPROTKB|B3KS98 EIF3S3 "Eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 59/155 (38%), Positives = 98/155 (63%)

Query:    16 FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
             F  + + + NS LI+  M ELE  + V  + ++ L L+SS  L +N++ L++ +D++S +
Sbjct:   212 FEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKNLQLLMDRVDEMSQD 270

Query:    76 QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPP-RL 134
               K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S  +FKP P+PP R+
Sbjct:   271 IVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKP-PQPPARM 328

Query:   135 ESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
             +S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:   329 DSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 363

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|O15372 EIF3H "Eukaryotic translation initiation factor 3 subunit H" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 59/155 (38%), Positives = 98/155 (63%)

Query:    16 FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
             F  + + + NS LI+  M ELE  + V  + ++ L L+SS  L +N++ L++ +D++S +
Sbjct:   198 FEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKNLQLLMDRVDEMSQD 256

Query:    76 QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPP-RL 134
               K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S  +FKP P+PP R+
Sbjct:   257 IVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKP-PQPPARM 314

Query:   135 ESFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
             +S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:   315 DSLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 349

GO:0005515 "protein binding" evidence=IPI

GO:0006413 "translational initiation" evidence=IC;IDA;TAS

GO:0006446 "regulation of translational initiation" evidence=TAS

GO:0003743 "translation initiation factor activity" evidence=IC;IDA

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5PPY6 eif3h "Eukaryotic translation initiation factor 3 subunit H" [Xenopus laevis (taxid:8355)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 57/154 (37%), Positives = 96/154 (62%)

Query:    16 FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
             F  + + + NS LI+  + EL+   PVT++ ++ L LSSS  LE++++ L++ +D++S +
Sbjct:   180 FEEVPIVIKNSHLINVLVWELDKKAPVTEK-HELLNLSSSNHLEKSLQLLMDRVDEMSQD 238

Query:    76 QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
               K+  Y R++ +QQ Q+  + Q+++ EN  R + GE PLPEED  N +FKP   P R++
Sbjct:   239 IVKYNTYQRNVGKQQQQKHQYTQRKQQENLQRLSRGETPLPEEDV-NKMFKPPVTPSRMD 297

Query:   136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
               LIA +I  Y   I G T Q+  +L++ +AL D
Sbjct:   298 PLLIAGQINTYIQHIKGFTSQNLGKLFMAEALQD 331

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|F1S1J9 EIF3H "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 57/154 (37%), Positives = 95/154 (61%)

Query:    16 FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
             F  + + + NS LI+  M ELE  + V  + ++ L L+SS  L +N++ L++ +D++S +
Sbjct:   173 FEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKNLQLLMDRVDEMSQD 231

Query:    76 QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLE 135
               K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S  +FKP   P R++
Sbjct:   232 IVKYNTYLRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLSK-LFKPHQPPARMD 290

Query:   136 SFLIANRIANYCNQINGVTGQSFSRLYLTKALHD 169
             S LIA +I  YC  I   T Q+  +L++ +AL +
Sbjct:   291 SLLIAGQINTYCQNIKEFTAQNLGKLFMAQALQE 324

GO:0005852 "eukaryotic translation initiation factor 3 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5Z2	EIF3H_ARATH	No assigned EC number	0.7870	0.9117	0.4599	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
cd08065	266	cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN)	4e-44

>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

 Score =  146 bits (370), Expect = 4e-44
 Identities = 59/104 (56%), Positives = 79/104 (75%)

Query: 16  FITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVE 75
           F  + V + NS L++A ++ELE D+P +Q D+DRL LS++ FLE+N+E L+E +D+LS E
Sbjct: 163 FEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLDLSTNSFLEKNLELLMESVDELSQE 222

Query: 76  QQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 119
           Q KF +Y R+L RQQAQ Q WLQKR+ EN  R+A GEEPLPEED
Sbjct: 223 QGKFNYYQRNLARQQAQIQQWLQKRKAENAQREARGEEPLPEED 266

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, differentiation, and apoptosis, and EIF3h in patients with non-small cell lung cancer (NSCLC) improves survival if treated with the Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitor (EGFR-TKI), Gefitinib. Plant eIF3h is implicated in translation of specific mRNAs. Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG1560	339	consensus Translation initiation factor 3, subunit	100.0
cd08065	266	MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi	100.0
cd08069	268	MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal	92.98
cd08064	265	MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi	82.85

>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-54  Score=368.21  Aligned_cols=165  Identities=38%  Similarity=0.605  Sum_probs=156.6

Q ss_pred             cccccCccccccceEEecceEechHHHHHHHhhcC--CCCCCCcCcCcccCCCCChhHHHHHHHHHHhHHHhHHHHHHHH
Q 030840            3 LIDKLTLGYCVCWFITLQVKVSNSALISAFMTELE--PDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQ   80 (170)
Q Consensus         3 ~~~~~~~~~~~~IfeEiPI~I~NS~Lv~a~L~eL~--~~~~~~~~~~d~L~ls~~~~Lek~le~L~~~vD~l~~Eq~k~~   80 (170)
                      ..++++++| ++||+||||+||||||+|++|++|+  .+.++....+..|||++...|+|+++.||++||++++|+++++
T Consensus       170 alk~~nlty-enmfeElPIVIknS~L~nvlmseLs~~e~c~sdk~~~~~fdlgs~t~leknir~lme~vDEl~qe~~~l~  248 (339)
T KOG1560|consen  170 ALKSANLTY-ENMFEELPIVIKNSHLANVLMSELSEPEDCESDKPLHSNFDLGSGTRLEKNIRLLMERVDELHQEIVNLN  248 (339)
T ss_pred             HHHhcCCCH-HHHHhhcCeeeeccHHHHHHHHhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356889999 9999999999999999999999997  4445555568999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 030840           81 FYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTGQSFSR  160 (170)
Q Consensus        81 ~yqR~~~rqq~~~~q~~~kRk~EN~~R~~~Ge~pLPeed~~~~~fK~p~ePSRL~slL~s~Qi~~yc~qi~~~~~~~l~K  160 (170)
                      +|||+++|||++++||++||++||+.|+++|+||||||| |.|+||+|++|.|||++|+|+||+++|++|..||+++|+|
T Consensus       249 kyqr~~~rqq~~~~q~~aKrqaENa~R~argep~lP~dd-~kr~fk~pq~p~rLdslLiS~qint~aq~ike~tSqnl~K  327 (339)
T KOG1560|consen  249 KYQRQLARQQAKKHQWIAKRQAENANRAARGEPPLPEDD-WKRIFKPPQEPRRLDSLLISGQINTSAQQIKEFTSQNLSK  327 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChHH-HHHHhcCCCchhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988 9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhc
Q 030840          161 LYLTKALHD  169 (170)
Q Consensus       161 lfl~~~l~~  169 (170)
                      ||++++++.
T Consensus       328 lfiaea~~~  336 (339)
T KOG1560|consen  328 LFIAEALQE  336 (339)
T ss_pred             HHHHHHHHH
Confidence            999999985

>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h

Probab=100.00  E-value=2.5e-35  Score=250.27  Aligned_cols=114  Identities=53%  Similarity=0.863  Sum_probs=107.3

Q ss_pred             cccCccccccceEEecceEechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHhHHHhHHHHHHHHHHHH
Q 030840            5 DKLTLGYCVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYR   84 (170)
Q Consensus         5 ~~~~~~~~~~IfeEiPI~I~NS~Lv~a~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~le~L~~~vD~l~~Eq~k~~~yqR   84 (170)
                      +++++++ .+||+||||+|+||+|+++||++|.+..+.+.++|++|+|+++++|||+|+.|+++||+|++|++||++|||
T Consensus       153 ~~~~~~~-~~if~eiPv~i~n~~l~~~~L~~l~~~~~~~~~~~~~l~l~~~~~le~~l~~l~~~id~l~~e~~~~~~y~r  231 (266)
T cd08065         153 REANLTF-SNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLDLSTNSFLEKNLELLMESVDELSQEQGKFNYYQR  231 (266)
T ss_pred             HHhcCch-hcEEEEEEEEEEchHHHHHHHHhcccCCCcccCCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556776 999999999999999999999999877666556999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCC
Q 030840           85 SLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED  119 (170)
Q Consensus        85 ~~~rqq~~~~q~~~kRk~EN~~R~~~Ge~pLPeed  119 (170)
                      +++|||++++||++|||+||++|+++|++|||+||
T Consensus       232 ~~~~~~~~~~~~~~kr~~en~~r~~~~~~~lp~~~  266 (266)
T cd08065         232 NLARQQAQIQQWLQKRKAENAQREARGEEPLPEED  266 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCC
Confidence            99999999999999999999999999999999975

Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

Probab=92.98  E-value=0.12  Score=44.31  Aligned_cols=27  Identities=15%  Similarity=0.101  Sum_probs=25.0

Q ss_pred             cccceEEecceEechHHHHHHHhhcCC
Q 030840           12 CVCWFITLQVKVSNSALISAFMTELEP   38 (170)
Q Consensus        12 ~~~IfeEiPI~I~NS~Lv~a~L~eL~~   38 (170)
                      +.++|.||||.|+||+|.+++|..|..
T Consensus       175 ~~~~y~~l~i~~~~s~l~~~~L~~l~~  201 (268)
T cd08069         175 HNKQYYSLPIEYFKSSLDRKLLLNLWN  201 (268)
T ss_pred             hhcEEEEeeeEEecCHHHHHHHHHHHH
Confidence            389999999999999999999999854

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i

>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f

Probab=82.85  E-value=4  Score=34.73  Aligned_cols=66  Identities=14%  Similarity=0.146  Sum_probs=40.9

Q ss_pred             cccceEEecceEechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 030840           12 CVCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSL   86 (170)
Q Consensus        12 ~~~IfeEiPI~I~NS~Lv~a~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~le~L~~~vD~l~~Eq~k~~~yqR~~   86 (170)
                      +..+|+|||++|+|+.-=..-+.-+........         ....+..+++.+..++-.|..-......|-+.+
T Consensus       139 ~~~~F~~ip~~i~~~eaE~i~v~~l~~~~~~~~---------~~~~~~~~l~~~~~al~~L~~~l~~i~~Yl~~V  204 (265)
T cd08064         139 LGSMFVPIPLELLYSEAERVALDLLAKTLASPS---------RSAPLTSDLEQLEASLEKLQEMLDRVLRYVEDV  204 (265)
T ss_pred             cceEEEEcceeeecCcHHHHHHHHHHhhccCCc---------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            379999999999999876666666643221111         011133666666666666665555555555543

Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
4b4t_V	306	26S proteasome regulatory subunit RPN11; hydrolase	86.01

>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.01  E-value=1.3  Score=37.49  Aligned_cols=113  Identities=12%  Similarity=0.158  Sum_probs=58.9

Q ss_pred             ccceEEecceEechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Q 030840           13 VCWFITLQVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQ   92 (170)
Q Consensus        13 ~~IfeEiPI~I~NS~Lv~a~L~eL~~~~~~~~~~~d~L~ls~~~~Lek~le~L~~~vD~l~~Eq~k~~~yqR~~~rqq~~   92 (170)
                      .+.|.++||.++.|.|-..+|..|.....       .-.|+..++ .++.+...+++.++..   ....|.+.+..++..
T Consensus       193 ~~~yy~l~i~~~ks~le~~~L~~L~~~~w-------~~~l~~~~~-~~~~~~~~~~i~~m~~---~~~~y~k~v~~e~~~  261 (306)
T 4b4t_V          193 NRHYYSLNIDYHKTAKETKMLMNLHKEQW-------QSGLKMYDY-EEKEESNLAATKSMVK---IAEQYSKRIEEEKEL  261 (306)
T ss_dssp             ---CEEECSCCCCCSSCTHHHHHHHHC-----------------C-HHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHH
T ss_pred             cceEEEeeeEEEeCcHHHHHHHHHHhccc-------ccccccCcH-HHHHHHHHHHHHHHHH---HHHHHHHHHHccccC
Confidence            56799999999999999999988854321       112333333 3444544555555433   233455555544333


Q ss_pred             HHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhHH
Q 030840           93 QQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTG  155 (170)
Q Consensus        93 ~~q~~~kRk~EN~~R~~~Ge~pLPeed~~~~~fK~p~ePSRL~slL~s~Qi~~yc~qi~~~~~  155 (170)
                      -..++.        .+.     .+.-|+. +     .-....+.|+.++-++.+|-.|+.++.
T Consensus       262 ~~~~l~--------~~~-----vgk~dp~-~-----~l~~~~~~l~~~ni~~~l~~~~~~~~~  305 (306)
T 4b4t_V          262 TEEELK--------TRY-----VGRQDPK-K-----HLSETADETLENNIVSVLTAGVNSVAI  305 (306)
T ss_dssp             HHHHHH--------HTC-----SCSSCCS-S-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHH--------hhc-----cCccChH-H-----HHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            222211        011     1111210 0     012345889999999999999998764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00